diff --git a/BamMap/storage1.BamMap.dat b/BamMap/storage1.BamMap.dat index dc463be..9663c46 100644 --- a/BamMap/storage1.BamMap.dat +++ b/BamMap/storage1.BamMap.dat @@ -617,12 +617,8 @@ C3L-00104.RNA-Seq.chimeric.T.hg38 C3L-00104 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-00104.RNA-Seq.R1.T C3L-00104 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a140b753-b805-40f4-90c0-25f726357d04/171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4795357750 FASTQ NA a140b753-b805-40f4-90c0-25f726357d04 storage1 C3L-00104.RNA-Seq.R2.T C3L-00104 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebd6b26a-bbec-485a-9700-9a26cd0c2402/171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 5281943263 FASTQ NA ebd6b26a-bbec-485a-9700-9a26cd0c2402 storage1 C3L-00104.RNA-Seq.transcriptome.T.hg38 C3L-00104 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fccb593e-bb76-4223-b50e-2d4cf2dc8283/e86802b2-71d4-41e7-9698-ea5e0bc1a673.rna_seq.transcriptome.gdc_realn.bam 9652542224 BAM hg38 fccb593e-bb76-4223-b50e-2d4cf2dc8283 storage1 -C3L-00104.WGS.N C3L-00104 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73826e51-96a5-4216-aaf6-ae08fb5c3b49/CPT0093800002.WholeGenome.RP-1303.bam 66334077045 BAM hg19 73826e51-96a5-4216-aaf6-ae08fb5c3b49 storage1 C3L-00104.WGS.N.hg38 C3L-00104 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b671161a-35d8-41ec-af05-22e5d61df42a/27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wgs_gdc_realn.bam 96242353366 BAM hg38 b671161a-35d8-41ec-af05-22e5d61df42a storage1 -C3L-00104.WGS.T C3L-00104 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a14cdb3-fc86-4cdf-9a9f-0f38768cb4ef/CPT0092440009.WholeGenome.RP-1303.bam 60975481512 BAM hg19 1a14cdb3-fc86-4cdf-9a9f-0f38768cb4ef storage1 C3L-00104.WGS.T.hg38 C3L-00104 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1be16bb-3b12-40f2-ac23-99fabddc615a/d36cf415-f716-4e50-a949-a06459cd5277_wgs_gdc_realn.bam 86365683446 BAM hg38 d1be16bb-3b12-40f2-ac23-99fabddc615a storage1 -C3L-00104.WXS.N C3L-00104 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad5fe8fb-d478-4522-820f-4062170a3ce2/CPT0093800002.WholeExome.RP-1303.bam 31862370299 BAM hg19 ad5fe8fb-d478-4522-820f-4062170a3ce2 storage1 -C3L-00104.WXS.T C3L-00104 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae33607f-44c1-44b3-8e2a-fab785a71555/CPT0092440009.WholeExome.RP-1303.bam 41370405160 BAM hg19 ae33607f-44c1-44b3-8e2a-fab785a71555 storage1 C3L-00136.RNA-Seq.R1.T C3L-00136 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1553b506-f502-4b5b-a7c9-e40af087a0b2/20210714_P1_D8_WB7988_plate1_S44_R1_001.fastq.gz 6629829146 FASTQ NA 1553b506-f502-4b5b-a7c9-e40af087a0b2 storage1 C3L-00136.RNA-Seq.R1.T C3L-00136 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df0e2942-c702-4135-81a0-fbec4439d753/170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R1_001.fastq.gz 4224214315 FASTQ NA df0e2942-c702-4135-81a0-fbec4439d753 storage1 C3L-00136.RNA-Seq.R2.T C3L-00136 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e1ad404-4646-4828-91b9-e3c35a4ce505/170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R2_001.fastq.gz 4672327244 FASTQ NA 4e1ad404-4646-4828-91b9-e3c35a4ce505 storage1 @@ -781,12 +777,8 @@ C3L-00365.RNA-Seq.chimeric.T.hg38 C3L-00365 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-00365.RNA-Seq.R1.T C3L-00365 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c44ed7f2-1622-46de-804c-9611500c3fc0/170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R1_001.fastq.gz 4305229627 FASTQ NA c44ed7f2-1622-46de-804c-9611500c3fc0 storage1 C3L-00365.RNA-Seq.R2.T C3L-00365 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce/170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R2_001.fastq.gz 4633365552 FASTQ NA 1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce storage1 C3L-00365.RNA-Seq.transcriptome.T.hg38 C3L-00365 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe304d8-7715-4b45-8a50-396f7a3d3f3e/b44988b3-2906-455f-9a03-98e881ec0826.rna_seq.transcriptome.gdc_realn.bam 9245106889 BAM hg38 fbe304d8-7715-4b45-8a50-396f7a3d3f3e storage1 -C3L-00365.WGS.N C3L-00365 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68cf4fa0-f1a1-4a08-aeb8-793af612f3aa/CPT0004390002.WholeGenome.RP-1303.bam 84728590605 BAM hg19 68cf4fa0-f1a1-4a08-aeb8-793af612f3aa storage1 C3L-00365.WGS.N.hg38 C3L-00365 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d6b2cf2-0e59-4d7e-8189-7ce030358a1e/1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 125945749891 BAM hg38 4d6b2cf2-0e59-4d7e-8189-7ce030358a1e storage1 -C3L-00365.WGS.T C3L-00365 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6fd34ee-2604-4612-bcc9-eef132918cee/CPT0002410008.WholeGenome.RP-1303.bam 83399791975 BAM hg19 a6fd34ee-2604-4612-bcc9-eef132918cee storage1 C3L-00365.WGS.T.hg38 C3L-00365 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0976b529-4cf1-4ce0-9777-5700dc51cede/fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 120800504632 BAM hg38 0976b529-4cf1-4ce0-9777-5700dc51cede storage1 -C3L-00365.WXS.N C3L-00365 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5a53750-bc0a-488f-89f0-97aadc8fffc5/CPT0004390002.WholeExome.RP-1303.bam 28839874946 BAM hg19 b5a53750-bc0a-488f-89f0-97aadc8fffc5 storage1 -C3L-00365.WXS.T C3L-00365 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e2d402d-0216-4fe7-b758-a364bfc09808/CPT0002410008.WholeExome.RP-1303.bam 24302982536 BAM hg19 6e2d402d-0216-4fe7-b758-a364bfc09808 storage1 C3L-00368.RNA-Seq.R1.A C3L-00368 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc417a64-b28b-4b98-bceb-72290423edab/171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R1_001.fastq.gz 2812587486 FASTQ NA bc417a64-b28b-4b98-bceb-72290423edab storage1 C3L-00368.RNA-Seq.R1.T C3L-00368 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb8ea747-c1e3-4688-951e-2003f19d54ed/170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4191973381 FASTQ NA bb8ea747-c1e3-4688-951e-2003f19d54ed storage1 C3L-00368.RNA-Seq.R2.A C3L-00368 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2677613-eac0-454b-bae2-d617f4d4499d/171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R2_001.fastq.gz 2954299519 FASTQ NA d2677613-eac0-454b-bae2-d617f4d4499d storage1 @@ -1198,22 +1190,14 @@ C3L-00674.RNA-Seq.chimeric.T.hg38 C3L-00674 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-00674.RNA-Seq.R1.T C3L-00674 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e77417b-9b2c-4504-827c-af04a22624be/170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 4303463091 FASTQ NA 7e77417b-9b2c-4504-827c-af04a22624be storage1 C3L-00674.RNA-Seq.R2.T C3L-00674 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eaf91490-e4f5-470e-83fd-9df23bc5a93a/170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4600073376 FASTQ NA eaf91490-e4f5-470e-83fd-9df23bc5a93a storage1 C3L-00674.RNA-Seq.transcriptome.T.hg38 C3L-00674 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/371d5b1a-75c3-4174-865e-00cdb92de256/d4187670-64bc-48c5-9be9-3780bc7cd89e.rna_seq.transcriptome.gdc_realn.bam 9380961835 BAM hg38 371d5b1a-75c3-4174-865e-00cdb92de256 storage1 -C3L-00674.WGS.N C3L-00674 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb6ec959-77c9-4c70-8bbd-726817a98b17/CPT0066670002.WholeGenome.RP-1303.bam 78380437858 BAM hg19 eb6ec959-77c9-4c70-8bbd-726817a98b17 storage1 C3L-00674.WGS.N.hg38 C3L-00674 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8eb43b54-434f-4d96-884d-0f1d3a9cdc7b/7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 117728414212 BAM hg38 8eb43b54-434f-4d96-884d-0f1d3a9cdc7b storage1 -C3L-00674.WGS.T C3L-00674 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b33374e-f8d6-4233-8673-686df51e608c/CPT0064650009.WholeGenome.RP-1303.bam 64020468730 BAM hg19 3b33374e-f8d6-4233-8673-686df51e608c storage1 C3L-00674.WGS.T.hg38 C3L-00674 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c1b29a0-d802-44cc-8629-74050711a8fa/6d3bba42-a739-401a-b95c-44a01c7780c0_gdc_realn.bam 97182893414 BAM hg38 8c1b29a0-d802-44cc-8629-74050711a8fa storage1 -C3L-00674.WXS.N C3L-00674 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8e21a83-8e17-4c01-b242-f9381dddf432/CPT0066670002.WholeExome.RP-1303.bam 30945238520 BAM hg19 e8e21a83-8e17-4c01-b242-f9381dddf432 storage1 -C3L-00674.WXS.T C3L-00674 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd282c80-59d6-4c11-a2cf-5a5b4f88c7d7/CPT0064650009.WholeExome.RP-1303.bam 31295052178 BAM hg19 fd282c80-59d6-4c11-a2cf-5a5b4f88c7d7 storage1 C3L-00677.RNA-Seq.chimeric.T.hg38 C3L-00677 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4085f10-a6ff-4f78-a725-a6244eb07d80/0d1e2fdc-6246-4c05-a4af-967e338acec6.rna_seq.chimeric.gdc_realn.bam 49385665 BAM hg38 b4085f10-a6ff-4f78-a725-a6244eb07d80 storage1 C3L-00677.RNA-Seq.R1.T C3L-00677 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/304fea20-f8c8-4481-b569-d4f292f18ac7/170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R1_001.fastq.gz 4173547985 FASTQ NA 304fea20-f8c8-4481-b569-d4f292f18ac7 storage1 C3L-00677.RNA-Seq.R2.T C3L-00677 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/792f7658-8838-4de8-956f-b0680b8609eb/170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4396146449 FASTQ NA 792f7658-8838-4de8-956f-b0680b8609eb storage1 C3L-00677.RNA-Seq.transcriptome.T.hg38 C3L-00677 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e9a5052-903d-46eb-8c39-2ce8b0ff5988/0d1e2fdc-6246-4c05-a4af-967e338acec6.rna_seq.transcriptome.gdc_realn.bam 7859286177 BAM hg38 3e9a5052-903d-46eb-8c39-2ce8b0ff5988 storage1 -C3L-00677.WGS.N C3L-00677 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2bb7a42a-27a8-427d-98de-306a282eeabf/CPT0071960002.WholeGenome.RP-1303.bam 62320693548 BAM hg19 2bb7a42a-27a8-427d-98de-306a282eeabf storage1 C3L-00677.WGS.N.hg38 C3L-00677 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c36b7bb-4d3d-4702-94f1-4618d96cbe82/5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 94179524762 BAM hg38 3c36b7bb-4d3d-4702-94f1-4618d96cbe82 storage1 -C3L-00677.WGS.T C3L-00677 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d537bed-dd28-4e5e-9133-8b6a476120d2/CPT0071100006.WholeGenome.RP-1303.bam 70990599021 BAM hg19 3d537bed-dd28-4e5e-9133-8b6a476120d2 storage1 C3L-00677.WGS.T.hg38 C3L-00677 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9bbac005-ca4b-48ba-b0c5-2cfa573227e1/1d6c4f0f-09c4-4472-a19e-30ee7e0ecf64_gdc_realn.bam 104577851813 BAM hg38 9bbac005-ca4b-48ba-b0c5-2cfa573227e1 storage1 -C3L-00677.WXS.N C3L-00677 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27b62576-2c2e-4013-9183-a920444738b3/CPT0071960002.WholeExome.RP-1303.bam 43110731198 BAM hg19 27b62576-2c2e-4013-9183-a920444738b3 storage1 -C3L-00677.WXS.T C3L-00677 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4ae9b28-630b-4ab2-8110-e84f230b856c/CPT0071100006.WholeExome.RP-1303.bam 30353255153 BAM hg19 d4ae9b28-630b-4ab2-8110-e84f230b856c storage1 C3L-00765.RNA-Seq.R1.T C3L-00765 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d87a8aa1-7a2a-4637-9b19-543b5bc959b2/170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3650442725 FASTQ NA d87a8aa1-7a2a-4637-9b19-543b5bc959b2 storage1 C3L-00765.RNA-Seq.R2.T C3L-00765 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b56ffa0-2871-4d85-b663-d6c666343b72/170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4016717982 FASTQ NA 3b56ffa0-2871-4d85-b663-d6c666343b72 storage1 C3L-00765.WGS.N.hg38 C3L-00765 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2da471be-93f2-4674-82d7-93c868ab4faa/309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 100395994243 BAM hg38 2da471be-93f2-4674-82d7-93c868ab4faa storage1 @@ -1707,62 +1691,38 @@ C3L-01040.RNA-Seq.chimeric.T.hg38 C3L-01040 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-01040.RNA-Seq.R1.T C3L-01040 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8a6c392-49e3-4c4f-8713-3c6d44123580/180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3363074490 FASTQ NA c8a6c392-49e3-4c4f-8713-3c6d44123580 storage1 C3L-01040.RNA-Seq.R2.T C3L-01040 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff922fb1-2b12-4723-ad48-e33ab23fdbab/180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3630546908 FASTQ NA ff922fb1-2b12-4723-ad48-e33ab23fdbab storage1 C3L-01040.RNA-Seq.transcriptome.T.hg38 C3L-01040 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fcd4cb4-6a2c-42a4-acc8-cb25d4f674a5/ad329b33-b7cc-42fb-8daf-2096b91752fb.rna_seq.transcriptome.gdc_realn.bam 6990595728 BAM hg38 5fcd4cb4-6a2c-42a4-acc8-cb25d4f674a5 storage1 -C3L-01040.WGS.N C3L-01040 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aeedc25a-2e51-4a78-8ef3-f84eabeb3126/CPT0171540002.WholeGenome.RP-1303.bam 60117320334 BAM hg19 aeedc25a-2e51-4a78-8ef3-f84eabeb3126 storage1 C3L-01040.WGS.N.hg38 C3L-01040 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c45f433-c594-4e0f-90e0-e7533a606720/30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wgs_gdc_realn.bam 88428000831 BAM hg38 3c45f433-c594-4e0f-90e0-e7533a606720 storage1 -C3L-01040.WGS.T C3L-01040 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64826a79-9148-4509-9a22-1bf1b5867b92/CPT0171580011.WholeGenome.RP-1303.bam 69153051054 BAM hg19 64826a79-9148-4509-9a22-1bf1b5867b92 storage1 C3L-01040.WGS.T.hg38 C3L-01040 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ac3b5d9-b876-4575-80ac-d915973981de/82659d5a-a5f5-43bd-86ed-b64dcc4d4503_wgs_gdc_realn.bam 100556072773 BAM hg38 4ac3b5d9-b876-4575-80ac-d915973981de storage1 -C3L-01040.WXS.N C3L-01040 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03eb9141-6b98-49f3-a0e2-0697a80c96a4/CPT0171540002.WholeExome.RP-1303.bam 25395481075 BAM hg19 03eb9141-6b98-49f3-a0e2-0697a80c96a4 storage1 -C3L-01040.WXS.T C3L-01040 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c85bc39c-b252-4e73-8f4b-a3cc50f1d8ce/CPT0171580011.WholeExome.RP-1303.bam 44377338423 BAM hg19 c85bc39c-b252-4e73-8f4b-a3cc50f1d8ce storage1 C3L-01043.RNA-Seq.chimeric.T.hg38 C3L-01043 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3267bb03-c917-46e1-9b86-2beb130e3085/bcba586f-1f62-4816-b76b-ac2ebb5f8094.rna_seq.chimeric.gdc_realn.bam 137880966 BAM hg38 3267bb03-c917-46e1-9b86-2beb130e3085 storage1 C3L-01043.RNA-Seq.R1.T C3L-01043 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36ad73db-0ba7-4485-9c22-3ea0b8e4e6bf/180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R1_001.fastq.gz 3865603145 FASTQ NA 36ad73db-0ba7-4485-9c22-3ea0b8e4e6bf storage1 C3L-01043.RNA-Seq.R2.T C3L-01043 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac0dfa9c-403e-4bc5-a36a-e06c5504187a/180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R2_001.fastq.gz 4224633366 FASTQ NA ac0dfa9c-403e-4bc5-a36a-e06c5504187a storage1 C3L-01043.RNA-Seq.transcriptome.T.hg38 C3L-01043 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b6391db-b60c-4d1e-bf5a-c36aaef253a0/bcba586f-1f62-4816-b76b-ac2ebb5f8094.rna_seq.transcriptome.gdc_realn.bam 9295226882 BAM hg38 6b6391db-b60c-4d1e-bf5a-c36aaef253a0 storage1 -C3L-01043.WGS.N C3L-01043 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddb6b503-bdde-443e-b66a-d9c91e1b125c/CPT0128550002.WholeGenome.RP-1303.bam 63355745989 BAM hg19 ddb6b503-bdde-443e-b66a-d9c91e1b125c storage1 C3L-01043.WGS.N.hg38 C3L-01043 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44c2286d-e07c-4871-9f20-b4bcca0adba6/a79dbdd5-f75c-475d-9779-9b789365a607_wgs_gdc_realn.bam 92189444626 BAM hg38 44c2286d-e07c-4871-9f20-b4bcca0adba6 storage1 -C3L-01043.WGS.T C3L-01043 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b81e30d8-9983-4605-9066-22bb3ef50373/CPT0127420006.WholeGenome.RP-1303.bam 59583257286 BAM hg19 b81e30d8-9983-4605-9066-22bb3ef50373 storage1 C3L-01043.WGS.T.hg38 C3L-01043 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37242c27-ad2c-41eb-b802-26b0a5cdcd19/27e86e11-a91a-4a57-a421-e890ea7eced1_wgs_gdc_realn.bam 86215273880 BAM hg38 37242c27-ad2c-41eb-b802-26b0a5cdcd19 storage1 -C3L-01043.WXS.N C3L-01043 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3fc87b6d-21af-4960-bad5-a01a81b1e160/CPT0128550002.WholeExome.RP-1303.bam 22962039272 BAM hg19 3fc87b6d-21af-4960-bad5-a01a81b1e160 storage1 -C3L-01043.WXS.T C3L-01043 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6d57e50-b14e-42d8-8abc-53937dc20726/CPT0127420006.WholeExome.RP-1303.bam 25733223786 BAM hg19 c6d57e50-b14e-42d8-8abc-53937dc20726 storage1 C3L-01045.RNA-Seq.chimeric.T.hg38 C3L-01045 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2ea903b-2dcb-4fd3-b0d6-c719db7cf427/c1549287-1d21-4120-9660-bbf562cca5cf.rna_seq.chimeric.gdc_realn.bam 55866239 BAM hg38 c2ea903b-2dcb-4fd3-b0d6-c719db7cf427 storage1 C3L-01045.RNA-Seq.R1.T C3L-01045 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf9158dd-fc4c-494a-a933-1eb497bfa401/180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R1_001.fastq.gz 3756365950 FASTQ NA cf9158dd-fc4c-494a-a933-1eb497bfa401 storage1 C3L-01045.RNA-Seq.R2.T C3L-01045 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfc91f64-f77a-4aca-a218-bd14e6152eaa/180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R2_001.fastq.gz 3835368061 FASTQ NA bfc91f64-f77a-4aca-a218-bd14e6152eaa storage1 C3L-01045.RNA-Seq.transcriptome.T.hg38 C3L-01045 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc53772-e396-455c-b717-e58955640b79/c1549287-1d21-4120-9660-bbf562cca5cf.rna_seq.transcriptome.gdc_realn.bam 7768704216 BAM hg38 3cc53772-e396-455c-b717-e58955640b79 storage1 -C3L-01045.WGS.N C3L-01045 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8bf7a9c-6b7a-4139-9b31-9b6feedfe9b6/CPT0124830002.WholeGenome.RP-1303.bam 56031587983 BAM hg19 e8bf7a9c-6b7a-4139-9b31-9b6feedfe9b6 storage1 C3L-01045.WGS.N.hg38 C3L-01045 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18051194-5341-4e37-8c41-52ebb75a1c10/ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wgs_gdc_realn.bam 82160164266 BAM hg38 18051194-5341-4e37-8c41-52ebb75a1c10 storage1 -C3L-01045.WGS.T C3L-01045 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fa60afd-93ef-4252-9ce2-28fed207d6a5/CPT0123530009.WholeGenome.RP-1303.bam 57783207672 BAM hg19 8fa60afd-93ef-4252-9ce2-28fed207d6a5 storage1 C3L-01045.WGS.T.hg38 C3L-01045 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c2a03ad-4ae2-4b8c-9f29-38232d19a992/b9f6bf00-d9af-4281-a9a8-e3e734cf4497_wgs_gdc_realn.bam 83135673504 BAM hg38 0c2a03ad-4ae2-4b8c-9f29-38232d19a992 storage1 -C3L-01045.WXS.N C3L-01045 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e9e404a-0183-460b-af63-93c4670f297f/CPT0124830002.WholeExome.RP-1303.bam 27947335750 BAM hg19 7e9e404a-0183-460b-af63-93c4670f297f storage1 -C3L-01045.WXS.T C3L-01045 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7338bd83-083e-4100-9caf-f049ee5e6021/CPT0123530009.WholeExome.RP-1303.bam 26338867096 BAM hg19 7338bd83-083e-4100-9caf-f049ee5e6021 storage1 C3L-01046.RNA-Seq.chimeric.T.hg38 C3L-01046 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e0f2d49-a528-4cf7-a61f-8b24dc7261fa/5f6c699d-3dd1-4c1e-b772-71283cf32603.rna_seq.chimeric.gdc_realn.bam 103036845 BAM hg38 5e0f2d49-a528-4cf7-a61f-8b24dc7261fa storage1 C3L-01046.RNA-Seq.R1.T C3L-01046 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17f3f9f8-56ce-4669-bd4c-870295c951d5/180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R1_001.fastq.gz 3915392286 FASTQ NA 17f3f9f8-56ce-4669-bd4c-870295c951d5 storage1 C3L-01046.RNA-Seq.R2.T C3L-01046 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/430cad38-35cd-4fb6-b511-eac776b17c2a/180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R2_001.fastq.gz 4262863355 FASTQ NA 430cad38-35cd-4fb6-b511-eac776b17c2a storage1 C3L-01046.RNA-Seq.transcriptome.T.hg38 C3L-01046 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4264f51-a6eb-44da-bf6e-e6df00115b99/5f6c699d-3dd1-4c1e-b772-71283cf32603.rna_seq.transcriptome.gdc_realn.bam 9683212628 BAM hg38 a4264f51-a6eb-44da-bf6e-e6df00115b99 storage1 -C3L-01046.WGS.N C3L-01046 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a03caad0-1a0c-4bf8-8b59-02b55bb142e8/CPT0128570002.WholeGenome.RP-1303.bam 52816280424 BAM hg19 a03caad0-1a0c-4bf8-8b59-02b55bb142e8 storage1 C3L-01046.WGS.N.hg38 C3L-01046 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebb12c39-da23-41fa-a0a0-5acef3da13d2/1cd7030a-e45b-4933-a33a-8b9695c7f05d_wgs_gdc_realn.bam 77049093776 BAM hg38 ebb12c39-da23-41fa-a0a0-5acef3da13d2 storage1 -C3L-01046.WGS.T C3L-01046 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/518529a5-4df2-4645-a569-e7b9e0a44ad1/CPT0127480007.WholeGenome.RP-1303.bam 64313443905 BAM hg19 518529a5-4df2-4645-a569-e7b9e0a44ad1 storage1 C3L-01046.WGS.T.hg38 C3L-01046 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2472e1fe-6275-45b8-a0fa-d70d34f740df/dde307c7-34d6-4c40-8adb-ab3d526d3d1d_wgs_gdc_realn.bam 93632121974 BAM hg38 2472e1fe-6275-45b8-a0fa-d70d34f740df storage1 -C3L-01046.WXS.N C3L-01046 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/000f42f2-409f-4c1c-a1c4-4018044ada5e/CPT0128570002.WholeExome.RP-1303.bam 29967665044 BAM hg19 000f42f2-409f-4c1c-a1c4-4018044ada5e storage1 -C3L-01046.WXS.T C3L-01046 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cd98b30-13fa-4d6a-a371-f2bd8150994f/CPT0127480007.WholeExome.RP-1303.bam 26961608410 BAM hg19 3cd98b30-13fa-4d6a-a371-f2bd8150994f storage1 C3L-01048.RNA-Seq.chimeric.T.hg38 C3L-01048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b16b5693-a333-40fa-a8cf-6cf060db39fe/1ba88acd-951a-472f-b5be-b4e8cc4174ce.rna_seq.chimeric.gdc_realn.bam 41061687 BAM hg38 b16b5693-a333-40fa-a8cf-6cf060db39fe storage1 C3L-01048.RNA-Seq.R1.T C3L-01048 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/027d5266-ce0a-4a61-bcc4-5afd0b31ea6b/180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R1_001.fastq.gz 3999600510 FASTQ NA 027d5266-ce0a-4a61-bcc4-5afd0b31ea6b storage1 C3L-01048.RNA-Seq.R2.T C3L-01048 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c544c27-8c98-451e-9a9f-0027fda725f9/180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R2_001.fastq.gz 4137948301 FASTQ NA 1c544c27-8c98-451e-9a9f-0027fda725f9 storage1 C3L-01048.RNA-Seq.transcriptome.T.hg38 C3L-01048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/463e36ac-0de7-404f-bb53-50e783ac822b/1ba88acd-951a-472f-b5be-b4e8cc4174ce.rna_seq.transcriptome.gdc_realn.bam 8119972886 BAM hg38 463e36ac-0de7-404f-bb53-50e783ac822b storage1 -C3L-01048.WGS.N C3L-01048 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5de49997-9916-4e86-9452-e4b289b10023/CPT0220100002.WholeGenome.RP-1303.bam 64064878335 BAM hg19 5de49997-9916-4e86-9452-e4b289b10023 storage1 C3L-01048.WGS.N.hg38 C3L-01048 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db210706-5e05-4ef3-b3e7-9d61b6338696/9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wgs_gdc_realn.bam 91768712836 BAM hg38 db210706-5e05-4ef3-b3e7-9d61b6338696 storage1 -C3L-01048.WGS.T C3L-01048 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc0430d5-c213-4dea-83b1-edcb99d0fe95/CPT0217190006.WholeGenome.RP-1303.bam 51428571431 BAM hg19 dc0430d5-c213-4dea-83b1-edcb99d0fe95 storage1 C3L-01048.WGS.T.hg38 C3L-01048 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9963a8bd-a5d7-4fb2-b085-17c47001d415/b11600b7-18e3-46a2-9e8e-f3221be28d81_wgs_gdc_realn.bam 74059258955 BAM hg38 9963a8bd-a5d7-4fb2-b085-17c47001d415 storage1 -C3L-01048.WXS.N C3L-01048 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a5002e2-4867-4006-83f7-5930022cce8c/CPT0220100002.WholeExome.RP-1303.bam 37314648463 BAM hg19 7a5002e2-4867-4006-83f7-5930022cce8c storage1 -C3L-01048.WXS.T C3L-01048 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b4dce75-c83a-4965-b7cb-23e482788d8e/CPT0217190006.WholeExome.RP-1303.bam 29173769305 BAM hg19 3b4dce75-c83a-4965-b7cb-23e482788d8e storage1 C3L-01049.RNA-Seq.chimeric.T.hg38 C3L-01049 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8a745f7-8439-4681-a889-96098b35b2ae/b2296b87-e695-40e5-b8d7-d927c5b92259.rna_seq.chimeric.gdc_realn.bam 31315563 BAM hg38 f8a745f7-8439-4681-a889-96098b35b2ae storage1 C3L-01049.RNA-Seq.R1.T C3L-01049 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61ee058b-1a61-4d46-baf4-be7ade0664e7/180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R1_001.fastq.gz 3664572534 FASTQ NA 61ee058b-1a61-4d46-baf4-be7ade0664e7 storage1 C3L-01049.RNA-Seq.R2.T C3L-01049 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c72c7346-e3c9-48f2-be17-8a9c7fc649de/180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R2_001.fastq.gz 3808741372 FASTQ NA c72c7346-e3c9-48f2-be17-8a9c7fc649de storage1 C3L-01049.RNA-Seq.transcriptome.T.hg38 C3L-01049 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b16f0e01-90ac-4521-b8da-3a13f1d102b1/b2296b87-e695-40e5-b8d7-d927c5b92259.rna_seq.transcriptome.gdc_realn.bam 9542905755 BAM hg38 b16f0e01-90ac-4521-b8da-3a13f1d102b1 storage1 -C3L-01049.WGS.N C3L-01049 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d118e7e1-8e32-48d8-a87a-7a1a3e38247c/CPT0220120002.WholeGenome.RP-1303.bam 62955891917 BAM hg19 d118e7e1-8e32-48d8-a87a-7a1a3e38247c storage1 C3L-01049.WGS.N.hg38 C3L-01049 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8e3c1a8-998c-4c1e-a46d-a79800017fdb/6166ddc6-db74-45c1-a5cc-d3514c4ae107_wgs_gdc_realn.bam 90939929389 BAM hg38 c8e3c1a8-998c-4c1e-a46d-a79800017fdb storage1 -C3L-01049.WGS.T C3L-01049 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd745430-8d00-4f45-a932-fba22187db9e/CPT0217430011.WholeGenome.RP-1303.bam 69756927253 BAM hg19 cd745430-8d00-4f45-a932-fba22187db9e storage1 C3L-01049.WGS.T.hg38 C3L-01049 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b869642c-ccbd-4df0-aad7-73f165487f79/9ebeb445-d973-4f09-b7eb-4e09e0c05e63_wgs_gdc_realn.bam 101047614346 BAM hg38 b869642c-ccbd-4df0-aad7-73f165487f79 storage1 -C3L-01049.WXS.N C3L-01049 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acbdcbc5-ce0e-4fd9-a84c-0e6cff22a9cc/CPT0220120002.WholeExome.RP-1303.bam 25172472327 BAM hg19 acbdcbc5-ce0e-4fd9-a84c-0e6cff22a9cc storage1 -C3L-01049.WXS.T C3L-01049 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f83a67d-4cc1-4e37-9107-a216a7a37c39/CPT0217430011.WholeExome.RP-1303.bam 25768843041 BAM hg19 6f83a67d-4cc1-4e37-9107-a216a7a37c39 storage1 C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee4aa03a-9b77-4f3c-8d67-8170d314c7a7/9eb27fe9-4d8e-4403-a0d0-a4f088e67ec7.rna_seq.genomic.gdc_realn.bam 9010787385 BAM hg38 ee4aa03a-9b77-4f3c-8d67-8170d314c7a7 storage1 C3L-01051.RNA-Seq.R1.T C3L-01051 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebe96da7-8ff0-44df-972f-a39af48988fc/180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R1_001.fastq.gz 3851822716 FASTQ NA ebe96da7-8ff0-44df-972f-a39af48988fc storage1 C3L-01051.RNA-Seq.R2.T C3L-01051 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f960daa9-575a-4dbd-9361-7d39ac4d98ee/180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R2_001.fastq.gz 4221160862 FASTQ NA f960daa9-575a-4dbd-9361-7d39ac4d98ee storage1 @@ -1791,12 +1751,8 @@ C3L-01061.RNA-Seq.chimeric.T.hg38 C3L-01061 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-01061.RNA-Seq.R1.T C3L-01061 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffb5df03-6c34-4b8f-90cb-eb3acb1f5c5e/180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R1_001.fastq.gz 3999682712 FASTQ NA ffb5df03-6c34-4b8f-90cb-eb3acb1f5c5e storage1 C3L-01061.RNA-Seq.R2.T C3L-01061 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6dd7a62-bb7b-4b6d-b9c8-f4058ce4609e/180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R2_001.fastq.gz 4169173074 FASTQ NA b6dd7a62-bb7b-4b6d-b9c8-f4058ce4609e storage1 C3L-01061.RNA-Seq.transcriptome.T.hg38 C3L-01061 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/927a1bad-3f43-43c5-855a-3ef16a0d6656/fe4b8a46-657b-4565-86bc-4251f1c05208.rna_seq.transcriptome.gdc_realn.bam 9202754006 BAM hg38 927a1bad-3f43-43c5-855a-3ef16a0d6656 storage1 -C3L-01061.WGS.N C3L-01061 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8b8c72d-2e59-4139-9746-21a256a8b688/CPT0220160002.WholeGenome.RP-1303.bam 63410960366 BAM hg19 d8b8c72d-2e59-4139-9746-21a256a8b688 storage1 C3L-01061.WGS.N.hg38 C3L-01061 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5920915c-87e0-407e-a422-02d3f8803b68/a33bef57-71c4-434e-8a4c-24b1ed593dd1_wgs_gdc_realn.bam 90566363330 BAM hg38 5920915c-87e0-407e-a422-02d3f8803b68 storage1 -C3L-01061.WGS.T C3L-01061 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3a4cb2c-5618-442e-8b73-59784ec10c40/CPT0217710011.WholeGenome.RP-1303.bam 63493272955 BAM hg19 e3a4cb2c-5618-442e-8b73-59784ec10c40 storage1 C3L-01061.WGS.T.hg38 C3L-01061 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9ba1998-cf81-4dc5-afcc-a42c8dc3ab1f/dff6198d-3541-426b-b894-d26b18d87c23_wgs_gdc_realn.bam 91897409662 BAM hg38 c9ba1998-cf81-4dc5-afcc-a42c8dc3ab1f storage1 -C3L-01061.WXS.N C3L-01061 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/deff7591-9409-4f60-9f27-4ddd763fc8a8/CPT0220160002.WholeExome.RP-1303.bam 25898528106 BAM hg19 deff7591-9409-4f60-9f27-4ddd763fc8a8 storage1 -C3L-01061.WXS.T C3L-01061 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb28d084-86fb-40f1-91e8-f7db9e0e7fe0/CPT0217710011.WholeExome.RP-1303.bam 29621741414 BAM hg19 cb28d084-86fb-40f1-91e8-f7db9e0e7fe0 storage1 C3L-01064.RNA-Seq.R1.T C3L-01064 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28100153-4171-4e1e-91d2-b0ad0baef05c/181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3922335259 FASTQ NA 28100153-4171-4e1e-91d2-b0ad0baef05c storage1 C3L-01064.RNA-Seq.R1.T C3L-01064 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37632942-0a23-4d71-95cb-eabc0462d5b9/20210729_P3_D8_WB7988-Plate3_S44_R1_001.fastq.gz 6098681542 FASTQ NA 37632942-0a23-4d71-95cb-eabc0462d5b9 storage1 C3L-01064.RNA-Seq.R2.T C3L-01064 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66b69b3d-3ab0-4b3f-834d-4413c1321080/181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4254448836 FASTQ NA 66b69b3d-3ab0-4b3f-834d-4413c1321080 storage1 @@ -1841,72 +1797,44 @@ C3L-01142.RNA-Seq.chimeric.T.hg38 C3L-01142 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-01142.RNA-Seq.R1.T C3L-01142 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/715d946d-0833-4686-b27c-4328f177eb3a/180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R1_001.fastq.gz 3877177502 FASTQ NA 715d946d-0833-4686-b27c-4328f177eb3a storage1 C3L-01142.RNA-Seq.R2.T C3L-01142 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d99975d-30c1-4664-b97e-5fc047d1e034/180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R2_001.fastq.gz 3984707975 FASTQ NA 4d99975d-30c1-4664-b97e-5fc047d1e034 storage1 C3L-01142.RNA-Seq.transcriptome.T.hg38 C3L-01142 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3bcea76-fa22-4e8a-85e9-88ccb777f64b/26fc663f-bb74-4e48-9529-0298b81f19d3.rna_seq.transcriptome.gdc_realn.bam 8572688872 BAM hg38 e3bcea76-fa22-4e8a-85e9-88ccb777f64b storage1 -C3L-01142.WGS.N C3L-01142 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7263c993-9921-4057-ab49-fc22479b3e39/CPT0220250002.WholeGenome.RP-1303.bam 55787583476 BAM hg19 7263c993-9921-4057-ab49-fc22479b3e39 storage1 C3L-01142.WGS.N.hg38 C3L-01142 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d8c241d-0d89-43e9-b612-0b8ebd6f56d8/25d298e0-e9cb-4417-967b-e12bd47aed51_wgs_gdc_realn.bam 80145635598 BAM hg38 3d8c241d-0d89-43e9-b612-0b8ebd6f56d8 storage1 -C3L-01142.WGS.T C3L-01142 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ca24cd2-23ea-4fad-8a60-22f64db04e2b/CPT0218330007.WholeGenome.RP-1303.bam 56569499517 BAM hg19 4ca24cd2-23ea-4fad-8a60-22f64db04e2b storage1 C3L-01142.WGS.T.hg38 C3L-01142 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7b6229b-8f20-4369-b1f0-6f776c32066b/89c5f9a8-85a9-4834-8bd6-6d1150e76f5a_wgs_gdc_realn.bam 84862166502 BAM hg38 f7b6229b-8f20-4369-b1f0-6f776c32066b storage1 -C3L-01142.WXS.N C3L-01142 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5bb57ce-b8a7-4e9f-9232-5b4276e2996a/CPT0220250002.WholeExome.RP-1303.bam 23494813684 BAM hg19 b5bb57ce-b8a7-4e9f-9232-5b4276e2996a storage1 -C3L-01142.WXS.T C3L-01142 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2233662-d93b-484c-a3de-16565c079245/CPT0218330007.WholeExome.RP-1303.bam 22596567202 BAM hg19 a2233662-d93b-484c-a3de-16565c079245 storage1 C3L-01146.RNA-Seq.chimeric.T.hg38 C3L-01146 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b21f282-4923-4f6c-85d8-d019d3296577/158599ac-150d-455b-88f1-c710f19b8b85.rna_seq.chimeric.gdc_realn.bam 33082105 BAM hg38 4b21f282-4923-4f6c-85d8-d019d3296577 storage1 C3L-01146.RNA-Seq.R1.T C3L-01146 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ee15def-b3f5-4f9f-876a-d5b5d58db477/180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R1_001.fastq.gz 3810099551 FASTQ NA 7ee15def-b3f5-4f9f-876a-d5b5d58db477 storage1 C3L-01146.RNA-Seq.R2.T C3L-01146 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c23a61a-de61-41ba-99e8-23400a3f9234/180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R2_001.fastq.gz 3989925929 FASTQ NA 4c23a61a-de61-41ba-99e8-23400a3f9234 storage1 C3L-01146.RNA-Seq.transcriptome.T.hg38 C3L-01146 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f13f43c5-2d31-414c-a321-27ffc76bbf4b/158599ac-150d-455b-88f1-c710f19b8b85.rna_seq.transcriptome.gdc_realn.bam 9519734424 BAM hg38 f13f43c5-2d31-414c-a321-27ffc76bbf4b storage1 -C3L-01146.WGS.N C3L-01146 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c6b675e-92c2-45c4-9862-bc4ac9546252/CPT0220330002.WholeGenome.RP-1303.bam 56384831654 BAM hg19 3c6b675e-92c2-45c4-9862-bc4ac9546252 storage1 C3L-01146.WGS.N.hg38 C3L-01146 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a48a7d58-0369-4a39-afaf-8eefb1a4fcfb/222678a1-f4f8-4082-991a-ebd1f9181d29_wgs_gdc_realn.bam 80924153122 BAM hg38 a48a7d58-0369-4a39-afaf-8eefb1a4fcfb storage1 -C3L-01146.WGS.T C3L-01146 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d044ac6e-83b9-4442-953a-6c14e8171c5c/CPT0218690007.WholeGenome.RP-1303.bam 64115180365 BAM hg19 d044ac6e-83b9-4442-953a-6c14e8171c5c storage1 C3L-01146.WGS.T.hg38 C3L-01146 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/880f6e26-7395-485f-92f9-0a0e6feea3be/613b02e9-7089-4a69-b2c4-cd5914dc1882_wgs_gdc_realn.bam 92341306186 BAM hg38 880f6e26-7395-485f-92f9-0a0e6feea3be storage1 -C3L-01146.WXS.N C3L-01146 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a47bad9-ce3f-46ff-a351-cf38d6ca2ffd/CPT0220330002.WholeExome.RP-1303.bam 23907417802 BAM hg19 9a47bad9-ce3f-46ff-a351-cf38d6ca2ffd storage1 -C3L-01146.WXS.T C3L-01146 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6851536b-8fcc-45cb-ba33-77c2d940c3af/CPT0218690007.WholeExome.RP-1303.bam 39434517183 BAM hg19 6851536b-8fcc-45cb-ba33-77c2d940c3af storage1 C3L-01149.RNA-Seq.chimeric.T.hg38 C3L-01149 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57916a7a-fba1-40a1-8f8e-9850aa2a932b/7e3efd41-682a-4a9a-b521-adf5cbe06bb8.rna_seq.chimeric.gdc_realn.bam 38782788 BAM hg38 57916a7a-fba1-40a1-8f8e-9850aa2a932b storage1 C3L-01149.RNA-Seq.R1.T C3L-01149 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c930cce-77e8-4ebd-b0bd-bc7cfa4473be/180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R1_001.fastq.gz 3863346811 FASTQ NA 0c930cce-77e8-4ebd-b0bd-bc7cfa4473be storage1 C3L-01149.RNA-Seq.R2.T C3L-01149 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c28cab64-66d0-4d12-a7d3-d7005c4886ef/180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R2_001.fastq.gz 3971137906 FASTQ NA c28cab64-66d0-4d12-a7d3-d7005c4886ef storage1 C3L-01149.RNA-Seq.transcriptome.T.hg38 C3L-01149 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/024a0f4c-fe94-4733-8a71-f3b0129d2ad9/7e3efd41-682a-4a9a-b521-adf5cbe06bb8.rna_seq.transcriptome.gdc_realn.bam 7371590117 BAM hg38 024a0f4c-fe94-4733-8a71-f3b0129d2ad9 storage1 -C3L-01149.WGS.N C3L-01149 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09a8205e-ea2b-4465-aa6f-747e5dcbf078/CPT0220350002.WholeGenome.RP-1303.bam 69210422044 BAM hg19 09a8205e-ea2b-4465-aa6f-747e5dcbf078 storage1 C3L-01149.WGS.N.hg38 C3L-01149 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f432dfa-d7d8-4d94-a885-2a60769ebcc4/28c09c40-a98f-4641-af84-2405ce473f60_wgs_gdc_realn.bam 99593736756 BAM hg38 9f432dfa-d7d8-4d94-a885-2a60769ebcc4 storage1 -C3L-01149.WGS.T C3L-01149 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19aa4ef2-396a-4bf7-9f4a-83937de473cb/CPT0218770006.WholeGenome.RP-1303.bam 50872173628 BAM hg19 19aa4ef2-396a-4bf7-9f4a-83937de473cb storage1 C3L-01149.WGS.T.hg38 C3L-01149 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbe70dd2-1790-40e6-b036-5088f864cea6/30ae1a29-cd48-4ee5-81be-215510402651_wgs_gdc_realn.bam 74660152817 BAM hg38 bbe70dd2-1790-40e6-b036-5088f864cea6 storage1 -C3L-01149.WXS.N C3L-01149 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/523337f3-bae4-4369-b1aa-bd18dfad6168/CPT0220350002.WholeExome.RP-1303.bam 29203566040 BAM hg19 523337f3-bae4-4369-b1aa-bd18dfad6168 storage1 -C3L-01149.WXS.T C3L-01149 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3035caa4-5ba7-446f-8a3e-d1d290e4ee4a/CPT0218770006.WholeExome.RP-1303.bam 21953723039 BAM hg19 3035caa4-5ba7-446f-8a3e-d1d290e4ee4a storage1 C3L-01154.RNA-Seq.chimeric.T.hg38 C3L-01154 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae5d67b4-8980-456a-8233-d089e939614d/e3545ede-34ae-4d36-9ddb-5e02e8a92680.rna_seq.chimeric.gdc_realn.bam 36824248 BAM hg38 ae5d67b4-8980-456a-8233-d089e939614d storage1 C3L-01154.RNA-Seq.R1.T C3L-01154 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60583fa7-45f0-40c0-97db-2d5320e7decf/180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R1_001.fastq.gz 4182412620 FASTQ NA 60583fa7-45f0-40c0-97db-2d5320e7decf storage1 C3L-01154.RNA-Seq.R2.T C3L-01154 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5832bc32-dfa3-484e-b142-cfdf7230220d/180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R2_001.fastq.gz 4348545918 FASTQ NA 5832bc32-dfa3-484e-b142-cfdf7230220d storage1 C3L-01154.RNA-Seq.transcriptome.T.hg38 C3L-01154 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52c7351f-0379-4583-b5d7-aa094019c93a/e3545ede-34ae-4d36-9ddb-5e02e8a92680.rna_seq.transcriptome.gdc_realn.bam 9852886988 BAM hg38 52c7351f-0379-4583-b5d7-aa094019c93a storage1 -C3L-01154.WGS.N C3L-01154 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7267ba6-8f3b-438d-a26a-509a259829a5/CPT0220370002.WholeGenome.RP-1303.bam 54192901483 BAM hg19 b7267ba6-8f3b-438d-a26a-509a259829a5 storage1 C3L-01154.WGS.N.hg38 C3L-01154 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c073a2bc-7cd9-47f2-a35f-bc52103a704c/c3419dee-0a62-41b8-934c-b713bc7f713b_wgs_gdc_realn.bam 77363570233 BAM hg38 c073a2bc-7cd9-47f2-a35f-bc52103a704c storage1 -C3L-01154.WGS.T C3L-01154 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49f75696-a836-4833-bf5c-8f8e3ac2f4c6/CPT0218830007.WholeGenome.RP-1303.bam 65854263311 BAM hg19 49f75696-a836-4833-bf5c-8f8e3ac2f4c6 storage1 C3L-01154.WGS.T.hg38 C3L-01154 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20c6e2a4-6efe-4671-81e6-f8d9e1b4d393/484d1154-cec5-4f8d-8e15-9de7e69d5d22_wgs_gdc_realn.bam 96740046225 BAM hg38 20c6e2a4-6efe-4671-81e6-f8d9e1b4d393 storage1 -C3L-01154.WXS.N C3L-01154 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2277f162-dd70-41c4-971e-f2a07e4da2d2/CPT0220370002.WholeExome.RP-1303.bam 27568043796 BAM hg19 2277f162-dd70-41c4-971e-f2a07e4da2d2 storage1 -C3L-01154.WXS.T C3L-01154 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/897dae8d-bfee-41bf-8a11-f30a70e02333/CPT0218830007.WholeExome.RP-1303.bam 30811232723 BAM hg19 897dae8d-bfee-41bf-8a11-f30a70e02333 storage1 C3L-01155.RNA-Seq.chimeric.T.hg38 C3L-01155 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99b98187-788f-4590-a5fd-adc44d632877/d6696d2a-713e-42a6-9d9c-f11b2ac188e6.rna_seq.chimeric.gdc_realn.bam 31003872 BAM hg38 99b98187-788f-4590-a5fd-adc44d632877 storage1 C3L-01155.RNA-Seq.R1.T C3L-01155 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d71d8418-991d-4703-927e-878e1ea001f6/180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R1_001.fastq.gz 3502370250 FASTQ NA d71d8418-991d-4703-927e-878e1ea001f6 storage1 C3L-01155.RNA-Seq.R2.T C3L-01155 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0720488-9d71-4fea-94a6-9cc46b89a41c/180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R2_001.fastq.gz 3655076132 FASTQ NA e0720488-9d71-4fea-94a6-9cc46b89a41c storage1 C3L-01155.RNA-Seq.transcriptome.T.hg38 C3L-01155 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00d195b7-a243-4b5c-97db-a647ef5a186f/d6696d2a-713e-42a6-9d9c-f11b2ac188e6.rna_seq.transcriptome.gdc_realn.bam 8063291695 BAM hg38 00d195b7-a243-4b5c-97db-a647ef5a186f storage1 -C3L-01155.WGS.N C3L-01155 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20d670db-fa04-4af2-a354-c8dc2e617f57/CPT0220390002.WholeGenome.RP-1303.bam 56404646991 BAM hg19 20d670db-fa04-4af2-a354-c8dc2e617f57 storage1 C3L-01155.WGS.N.hg38 C3L-01155 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4bced1d-cb6c-4837-b4eb-dad1507de56a/48de787e-f39f-4052-920f-45a36255ba7b_wgs_gdc_realn.bam 81369207898 BAM hg38 c4bced1d-cb6c-4837-b4eb-dad1507de56a storage1 -C3L-01155.WGS.T C3L-01155 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/707e72e0-9e98-415d-858f-2cd9e7f8a010/CPT0218890007.WholeGenome.RP-1303.bam 58325560961 BAM hg19 707e72e0-9e98-415d-858f-2cd9e7f8a010 storage1 C3L-01155.WGS.T.hg38 C3L-01155 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/896fec72-4491-44f1-b185-b216dcb77b5a/5edb7cc0-ff25-4b38-b386-cb8815496b27_wgs_gdc_realn.bam 84867521223 BAM hg38 896fec72-4491-44f1-b185-b216dcb77b5a storage1 -C3L-01155.WXS.N C3L-01155 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ef2d5a1-b304-4dce-bf5a-99be7b42eb79/CPT0220390002.WholeExome.RP-1303.bam 23280404211 BAM hg19 9ef2d5a1-b304-4dce-bf5a-99be7b42eb79 storage1 -C3L-01155.WXS.T C3L-01155 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b3af174-d7f3-40a9-ac37-50fcb73c5a7b/CPT0218890007.WholeExome.RP-1303.bam 25791767177 BAM hg19 4b3af174-d7f3-40a9-ac37-50fcb73c5a7b storage1 C3L-01156.RNA-Seq.chimeric.T.hg38 C3L-01156 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ccd4c80-07b4-4b61-bc1c-029afbc80523/f8ea68be-2fa6-4431-8a4d-2c098600aeca.rna_seq.chimeric.gdc_realn.bam 35401307 BAM hg38 6ccd4c80-07b4-4b61-bc1c-029afbc80523 storage1 C3L-01156.RNA-Seq.R1.T C3L-01156 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8f2ee66-29ac-4764-aa67-7e2ecd91ce3a/180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R1_001.fastq.gz 3528330279 FASTQ NA c8f2ee66-29ac-4764-aa67-7e2ecd91ce3a storage1 C3L-01156.RNA-Seq.R2.T C3L-01156 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/052af4e4-ac86-48ea-8da0-a47bc581918f/180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R2_001.fastq.gz 3828609242 FASTQ NA 052af4e4-ac86-48ea-8da0-a47bc581918f storage1 C3L-01156.RNA-Seq.transcriptome.T.hg38 C3L-01156 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a776628-c576-4b8b-9751-5d9587315f13/f8ea68be-2fa6-4431-8a4d-2c098600aeca.rna_seq.transcriptome.gdc_realn.bam 8143233695 BAM hg38 6a776628-c576-4b8b-9751-5d9587315f13 storage1 -C3L-01156.WGS.N C3L-01156 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbc10dd1-8fc4-4ad6-a0bc-aaf15a1fe21b/CPT0220410002.WholeGenome.RP-1303.bam 53662836231 BAM hg19 bbc10dd1-8fc4-4ad6-a0bc-aaf15a1fe21b storage1 C3L-01156.WGS.N.hg38 C3L-01156 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9c7d2a9-08af-4b2c-b473-cbd25a09e5d8/27f1a6ae-b936-4581-8779-c3fa551c1650_wgs_gdc_realn.bam 76810545077 BAM hg38 f9c7d2a9-08af-4b2c-b473-cbd25a09e5d8 storage1 -C3L-01156.WGS.T C3L-01156 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4e5e78d-0515-493b-bfa1-07a4a0dfb7d4/CPT0218960006.WholeGenome.RP-1303.bam 54646620934 BAM hg19 b4e5e78d-0515-493b-bfa1-07a4a0dfb7d4 storage1 C3L-01156.WGS.T.hg38 C3L-01156 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/659dfe0f-91c9-4100-b133-c90d2658ed50/e098b073-e9cc-4344-a7b7-fe7cf5ecc7c3_wgs_gdc_realn.bam 78332236781 BAM hg38 659dfe0f-91c9-4100-b133-c90d2658ed50 storage1 -C3L-01156.WXS.N C3L-01156 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ed7bea2-2056-4944-bb33-069102c8b545/CPT0220410002.WholeExome.RP-1303.bam 25688978138 BAM hg19 9ed7bea2-2056-4944-bb33-069102c8b545 storage1 -C3L-01156.WXS.T C3L-01156 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d25eadf2-462e-4fb4-a306-6b29d6147cbd/CPT0218960006.WholeExome.RP-1303.bam 26758612392 BAM hg19 d25eadf2-462e-4fb4-a306-6b29d6147cbd storage1 C3L-01157.RNA-Seq.chimeric.T.hg38 C3L-01157 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2f80b57-6520-432f-9d3d-ce3bbaff6248/fc26dfae-cbce-4128-aa1f-74fce4e0db0a.rna_seq.chimeric.gdc_realn.bam 138928048 BAM hg38 d2f80b57-6520-432f-9d3d-ce3bbaff6248 storage1 C3L-01157.RNA-Seq.R1.T C3L-01157 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e17f145-b0f4-4db5-8739-87119b0d9500/181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R1_001.fastq.gz 2746501963 FASTQ NA 7e17f145-b0f4-4db5-8739-87119b0d9500 storage1 C3L-01157.RNA-Seq.R2.T C3L-01157 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9a967f9-6406-40e3-8843-662f83c5f38d/181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ NA f9a967f9-6406-40e3-8843-662f83c5f38d storage1 C3L-01157.RNA-Seq.transcriptome.T.hg38 C3L-01157 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/106ab42e-4006-43a3-b5c7-e42274bfc72e/fc26dfae-cbce-4128-aa1f-74fce4e0db0a.rna_seq.transcriptome.gdc_realn.bam 5573127653 BAM hg38 106ab42e-4006-43a3-b5c7-e42274bfc72e storage1 -C3L-01157.WGS.N C3L-01157 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/285ca7b1-1d00-43db-a2cf-62c62859b02b/CPT0200400002.WholeGenome.RP-1303.bam 62002874799 BAM hg19 285ca7b1-1d00-43db-a2cf-62c62859b02b storage1 C3L-01157.WGS.N.hg38 C3L-01157 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/656415e5-82ea-4184-8840-8dfb1cfa8c75/c3b0e158-5c09-4c05-9fb8-32f6b08c8b63_wgs_gdc_realn.bam 87977564481 BAM hg38 656415e5-82ea-4184-8840-8dfb1cfa8c75 storage1 -C3L-01157.WGS.T C3L-01157 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0d6f247-4deb-4b78-8769-9d0180bf4769/CPT0199770006.WholeGenome.RP-1303.bam 71598419519 BAM hg19 a0d6f247-4deb-4b78-8769-9d0180bf4769 storage1 C3L-01157.WGS.T.hg38 C3L-01157 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ce52428-a149-4c44-bf49-49b978eed662/05f468bf-e2ce-480d-ad81-68644619e4ee_wgs_gdc_realn.bam 103506832881 BAM hg38 3ce52428-a149-4c44-bf49-49b978eed662 storage1 -C3L-01157.WXS.N C3L-01157 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f2ff738-0f87-4e29-afca-e835c35e53a0/CPT0200400002.WholeExome.RP-1303.bam 22487358946 BAM hg19 6f2ff738-0f87-4e29-afca-e835c35e53a0 storage1 -C3L-01157.WXS.T C3L-01157 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ce3e40c-e135-4c00-84eb-01bc70835751/CPT0199770006.WholeExome.RP-1303.bam 28639693248 BAM hg19 2ce3e40c-e135-4c00-84eb-01bc70835751 storage1 C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7890766-18d3-427d-a2c8-2277f4ea91ed/8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.genomic.gdc_realn.bam 12188572936 BAM hg38 d7890766-18d3-427d-a2c8-2277f4ea91ed storage1 C3L-01158.RNA-Seq.R1.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ece270eb-efc7-440c-9a45-8c8000ba796c/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ NA ece270eb-efc7-440c-9a45-8c8000ba796c storage1 C3L-01158.RNA-Seq.R2.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc148b01-aa6a-40cf-ac6c-75d6bbedd59b/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ NA cc148b01-aa6a-40cf-ac6c-75d6bbedd59b storage1 @@ -1955,13 +1883,9 @@ C3L-01232.RNA-Seq.R1.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-01232.RNA-Seq.R1.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b412bf7-dfe6-46ce-8351-540dfc2698d5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ NA 1b412bf7-dfe6-46ce-8351-540dfc2698d5 storage1 C3L-01232.RNA-Seq.R2.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64276f84-695c-4a6a-bde8-0b0378f17656/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ NA 64276f84-695c-4a6a-bde8-0b0378f17656 storage1 C3L-01232.RNA-Seq.R2.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64276f84-695c-4a6a-bde8-0b0378f17656/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ NA 64276f84-695c-4a6a-bde8-0b0378f17656 storage1 -C3L-01232.WGS.N C3L-01232 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3630728-631d-4c32-b3b8-4d764a9edc96/CPT0240430002.WholeGenome.RP-2158.bam 23484726875 BAM hg19 c3630728-631d-4c32-b3b8-4d764a9edc96 storage1 C3L-01232.WGS.N.hg38 C3L-01232 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7777e0c-2447-4d47-aa47-e65bed9a8e47/54352f31-de32-4a52-b0c0-1ab882496fc3_wgs_gdc_realn.bam 67565943172 BAM hg38 c7777e0c-2447-4d47-aa47-e65bed9a8e47 storage1 -C3L-01232.WGS.T C3L-01232 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62c0cb54-b429-4b6d-b1ef-4f0217a50eb0/CPT0239440006.WholeGenome.RP-2158.bam 25689260792 BAM hg19 62c0cb54-b429-4b6d-b1ef-4f0217a50eb0 storage1 C3L-01232.WGS.T.hg38 C3L-01232 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7794e4ec-ebc2-40ca-9e51-a0a869ecc2be/218349a8-16e2-4bcd-9c9a-690bc5152441_wgs_gdc_realn.bam 74541963072 BAM hg38 7794e4ec-ebc2-40ca-9e51-a0a869ecc2be storage1 -C3L-01232.WXS.N C3L-01232 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/543de157-2e71-4709-9fec-91f43bd4cc9e/CPT0240430002.WholeExome.RP-1303.bam 32725473162 BAM hg19 543de157-2e71-4709-9fec-91f43bd4cc9e storage1 C3L-01232.WXS.N.hg38 C3L-01232 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a65f1db8-170a-4ec2-a20b-e6deff964e2c/54352f31-de32-4a52-b0c0-1ab882496fc3_wxs_gdc_realn.bam 45532138913 BAM hg38 a65f1db8-170a-4ec2-a20b-e6deff964e2c storage1 -C3L-01232.WXS.T C3L-01232 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9983b071-cda4-4712-8dea-9f1a086c30a4/CPT0239440006.WholeExome.RP-1303.bam 22882723649 BAM hg19 9983b071-cda4-4712-8dea-9f1a086c30a4 storage1 C3L-01232.WXS.T.hg38 C3L-01232 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6da28b7b-b148-4c49-97ee-d4587b058a46/218349a8-16e2-4bcd-9c9a-690bc5152441_wxs_gdc_realn.bam 32795800931 BAM hg38 6da28b7b-b148-4c49-97ee-d4587b058a46 storage1 C3L-01237.RNA-Seq.R1.A C3L-01237 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba80215c-4900-4015-9279-3f316050e22e/190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R1_001.fastq.gz 3867848237 FASTQ NA ba80215c-4900-4015-9279-3f316050e22e storage1 C3L-01237.RNA-Seq.R1.T C3L-01237 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ea19e8e-ebfc-490f-beac-c742feca0bfc/20210714_P1_F9_WB7988_plate1_S69_R1_001.fastq.gz 6419510492 FASTQ NA 5ea19e8e-ebfc-490f-beac-c742feca0bfc storage1 @@ -2175,12 +2099,8 @@ C3L-01327.RNA-Seq.chimeric.T.hg38 C3L-01327 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-01327.RNA-Seq.R1.T C3L-01327 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a69a48b-eeeb-473c-9ff9-9ea09cb43090/170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3051942729 FASTQ NA 2a69a48b-eeeb-473c-9ff9-9ea09cb43090 storage1 C3L-01327.RNA-Seq.R2.T C3L-01327 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00d4635f-27ee-4351-a39c-230ebb366fd7/170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3385695454 FASTQ NA 00d4635f-27ee-4351-a39c-230ebb366fd7 storage1 C3L-01327.RNA-Seq.transcriptome.T.hg38 C3L-01327 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84ae0dde-4387-49b1-acdc-735bb4261071/c384ac16-e8e5-4fe9-868a-0c09c4d46f07.rna_seq.transcriptome.gdc_realn.bam 6350855193 BAM hg38 84ae0dde-4387-49b1-acdc-735bb4261071 storage1 -C3L-01327.WGS.N C3L-01327 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8c9db7c-5839-4683-9f24-281ca8833824/CPT0066690002.WholeGenome.RP-1303.bam 82382827555 BAM hg19 d8c9db7c-5839-4683-9f24-281ca8833824 storage1 C3L-01327.WGS.N.hg38 C3L-01327 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbe76591-1276-49d4-a0d5-22878b05c8f9/d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 125494357631 BAM hg38 dbe76591-1276-49d4-a0d5-22878b05c8f9 storage1 -C3L-01327.WGS.T C3L-01327 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae894eaf-82cb-4156-9586-f3f6c45b7963/CPT0064890009.WholeGenome.RP-1303.bam 65492288640 BAM hg19 ae894eaf-82cb-4156-9586-f3f6c45b7963 storage1 C3L-01327.WGS.T.hg38 C3L-01327 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f573ff27-2c76-4d3a-92fa-050676487f52/3b2c4984-e1ca-4748-bb09-e62be4918bae_gdc_realn.bam 98566544991 BAM hg38 f573ff27-2c76-4d3a-92fa-050676487f52 storage1 -C3L-01327.WXS.N C3L-01327 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8343af23-a3e6-4286-8508-2520ed91a050/CPT0066690002.WholeExome.RP-1303.bam 27511617665 BAM hg19 8343af23-a3e6-4286-8508-2520ed91a050 storage1 -C3L-01327.WXS.T C3L-01327 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3a8cd87-24fe-454c-ad24-03efd48adf1a/CPT0064890009.WholeExome.RP-1303.bam 30037298440 BAM hg19 e3a8cd87-24fe-454c-ad24-03efd48adf1a storage1 C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77b18d72-f08c-47ec-a786-d7a2ecb5c1b6/f1274a56-b5b2-4316-999f-5de0211fcf37.rna_seq.genomic.gdc_realn.bam 11353910760 BAM hg38 77b18d72-f08c-47ec-a786-d7a2ecb5c1b6 storage1 C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3da74dc6-380b-4de0-8f9e-221a3cf79a4a/51a03355-1437-48f7-ac14-2c09f83cd89c.rna_seq.genomic.gdc_realn.bam 9451583241 BAM hg38 3da74dc6-380b-4de0-8f9e-221a3cf79a4a storage1 C3L-01328.RNA-Seq.R1.A C3L-01328 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/140c920a-1034-4bd0-b3ae-cda59eaf729d/180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4773594378 FASTQ NA 140c920a-1034-4bd0-b3ae-cda59eaf729d storage1 @@ -2535,10 +2455,7 @@ C3L-01834.RNA-Seq.chimeric.T.hg38 C3L-01834 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-01834.RNA-Seq.R1.T C3L-01834 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bddce258-f479-4064-a83d-48bd5125aa0b/180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4205998241 FASTQ NA bddce258-f479-4064-a83d-48bd5125aa0b storage1 C3L-01834.RNA-Seq.R2.T C3L-01834 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ee9ed9c-5178-49a5-b72c-b8ca17b7f496/180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4708620005 FASTQ NA 0ee9ed9c-5178-49a5-b72c-b8ca17b7f496 storage1 C3L-01834.RNA-Seq.transcriptome.T.hg38 C3L-01834 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5afef067-5da7-4570-a70a-9d252b72cb9e/0bd61f0c-5023-49e8-978d-758d69e12e07.rna_seq.transcriptome.gdc_realn.bam 9387694402 BAM hg38 5afef067-5da7-4570-a70a-9d252b72cb9e storage1 -C3L-01834.WGS.N C3L-01834 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f48150ec-f2a3-40a2-9d9b-52193cfb7574/CPT0105090002.WholeGenome.RP-1303.bam 58510830219 BAM hg19 f48150ec-f2a3-40a2-9d9b-52193cfb7574 storage1 C3L-01834.WGS.N.hg38 C3L-01834 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/758f901a-f6be-4f59-bc5d-50185c78a336/7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wgs_gdc_realn.bam 85614011228 BAM hg38 758f901a-f6be-4f59-bc5d-50185c78a336 storage1 -C3L-01834.WXS.N C3L-01834 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9844e3be-cc8e-4838-91a7-c7792ae4970d/CPT0105090002.WholeExome.RP-1303.bam 34684127259 BAM hg19 9844e3be-cc8e-4838-91a7-c7792ae4970d storage1 -C3L-01834.WXS.T.ADNA_vyGzBM C3L-01834 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd78ec3d-c033-4257-b250-2b90eeea5bca/CPT0104220010.WholeExome.RP-1303.bam 22939639897 BAM hg19 bd78ec3d-c033-4257-b250-2b90eeea5bca storage1 C3L-01836.RNA-Seq.R1.A C3L-01836 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2aeeecab-38f1-4ac1-b075-46ae5151bd1a/171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ NA 2aeeecab-38f1-4ac1-b075-46ae5151bd1a storage1 C3L-01836.RNA-Seq.R1.T C3L-01836 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3e2839a-6453-485b-9a7d-e085f009d98a/171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ NA a3e2839a-6453-485b-9a7d-e085f009d98a storage1 C3L-01836.RNA-Seq.R1.T.HET_oly41Y C3L-01836 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/768aa7e6-69e3-4feb-8b45-1c6858776a7d/200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ NA 768aa7e6-69e3-4feb-8b45-1c6858776a7d storage1 @@ -2627,12 +2544,8 @@ C3L-01887.RNA-Seq.chimeric.T.hg38 C3L-01887 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-01887.RNA-Seq.R1.T C3L-01887 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c22860-6d90-470c-afbb-b47b75db5f09/171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R1_001.fastq.gz 3752130477 FASTQ NA d3c22860-6d90-470c-afbb-b47b75db5f09 storage1 C3L-01887.RNA-Seq.R2.T C3L-01887 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d80520b-a0a8-4768-a8c0-2b23b35b0341/171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R2_001.fastq.gz 3825927354 FASTQ NA 7d80520b-a0a8-4768-a8c0-2b23b35b0341 storage1 C3L-01887.RNA-Seq.transcriptome.T.hg38 C3L-01887 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/328ffde4-e06c-44df-98e9-bdb7c61aef69/ecdfe25c-9d03-449b-9c2d-22081e956c18.rna_seq.transcriptome.gdc_realn.bam 7497227309 BAM hg38 328ffde4-e06c-44df-98e9-bdb7c61aef69 storage1 -C3L-01887.WGS.N C3L-01887 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b7726df-2f6c-4db6-a780-cdd80ecce462/CPT0105110002.WholeGenome.RP-1303.bam 55815489246 BAM hg19 5b7726df-2f6c-4db6-a780-cdd80ecce462 storage1 C3L-01887.WGS.N.hg38 C3L-01887 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f992d65-6bb5-473e-a664-1a817a7eec2e/030a80ff-6a29-4599-b87a-c0811c028057_wgs_gdc_realn.bam 83145630508 BAM hg38 9f992d65-6bb5-473e-a664-1a817a7eec2e storage1 -C3L-01887.WGS.T C3L-01887 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee9f7819-83f0-462f-9ff4-969da6ea9409/CPT0104330009.WholeGenome.RP-1303.bam 78887252807 BAM hg19 ee9f7819-83f0-462f-9ff4-969da6ea9409 storage1 C3L-01887.WGS.T.hg38 C3L-01887 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59e0b276-24b6-4bf5-80fc-ff074f3eba57/e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wgs_gdc_realn.bam 116396076820 BAM hg38 59e0b276-24b6-4bf5-80fc-ff074f3eba57 storage1 -C3L-01887.WXS.N C3L-01887 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a486528c-3b8e-43a6-b2b0-afb801c4f80b/CPT0105110002.WholeExome.RP-1303.bam 30407460834 BAM hg19 a486528c-3b8e-43a6-b2b0-afb801c4f80b storage1 -C3L-01887.WXS.T C3L-01887 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16b7f8c5-3428-4d6c-ac01-2f00a50abe76/CPT0104330009.WholeExome.RP-1303.bam 55248086562 BAM hg19 16b7f8c5-3428-4d6c-ac01-2f00a50abe76 storage1 C3L-01889.RNA-Seq.R1.A C3L-01889 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b451f11f-f844-4236-9ba0-116e8a60eb8e/171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R1_001.fastq.gz 2593602299 FASTQ NA b451f11f-f844-4236-9ba0-116e8a60eb8e storage1 C3L-01889.RNA-Seq.R1.T C3L-01889 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82fdf3eb-3eb7-4306-b018-0301e1a5d687/171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 4426449980 FASTQ NA 82fdf3eb-3eb7-4306-b018-0301e1a5d687 storage1 C3L-01889.RNA-Seq.R2.A C3L-01889 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/682eb12d-02fc-48e0-b83e-fb4dbeac16a6/171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R2_001.fastq.gz 2825476482 FASTQ NA 682eb12d-02fc-48e0-b83e-fb4dbeac16a6 storage1 @@ -2742,12 +2655,8 @@ C3L-02041.RNA-Seq.chimeric.T.hg38 C3L-02041 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02041.RNA-Seq.R1.T C3L-02041 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1da7dff2-8bad-4a10-9b89-de71e20efb67/180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R1_001.fastq.gz 3831582154 FASTQ NA 1da7dff2-8bad-4a10-9b89-de71e20efb67 storage1 C3L-02041.RNA-Seq.R2.T C3L-02041 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5bb2b2d1-b7a2-4028-84bd-0b8603028e4b/180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R2_001.fastq.gz 4207462558 FASTQ NA 5bb2b2d1-b7a2-4028-84bd-0b8603028e4b storage1 C3L-02041.RNA-Seq.transcriptome.T.hg38 C3L-02041 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7dc808a-ad7c-4ce9-8ade-c972ad4c9fc1/75774427-0141-4f32-a16b-88e39ca26928.rna_seq.transcriptome.gdc_realn.bam 7292240460 BAM hg38 e7dc808a-ad7c-4ce9-8ade-c972ad4c9fc1 storage1 -C3L-02041.WGS.N C3L-02041 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/985fcf02-2005-4781-afb7-fbe2e5c0ed20/CPT0124240002.WholeGenome.RP-1303.bam 56509025370 BAM hg19 985fcf02-2005-4781-afb7-fbe2e5c0ed20 storage1 C3L-02041.WGS.N.hg38 C3L-02041 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e4208c9-c462-4b08-8e72-a5842dae8f86/413408c0-fdd9-4e15-85da-132bfe999cb2_wgs_gdc_realn.bam 82504136941 BAM hg38 5e4208c9-c462-4b08-8e72-a5842dae8f86 storage1 -C3L-02041.WGS.T C3L-02041 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/919c7df1-4f22-414e-a282-be607f711f01/CPT0125510009.WholeGenome.RP-1303.bam 66143376831 BAM hg19 919c7df1-4f22-414e-a282-be607f711f01 storage1 C3L-02041.WGS.T.hg38 C3L-02041 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5a9cb82-9dba-4166-ac51-13c08ab9bb23/e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wgs_gdc_realn.bam 96364360840 BAM hg38 b5a9cb82-9dba-4166-ac51-13c08ab9bb23 storage1 -C3L-02041.WXS.N C3L-02041 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6efe144-59e9-4b34-ae37-a40b15756890/CPT0124240002.WholeExome.RP-1303.bam 32194046670 BAM hg19 b6efe144-59e9-4b34-ae37-a40b15756890 storage1 -C3L-02041.WXS.T C3L-02041 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc28db96-ebdf-4abd-b7ef-eae25253aa77/CPT0125510009.WholeExome.RP-1303.bam 40627967636 BAM hg19 bc28db96-ebdf-4abd-b7ef-eae25253aa77 storage1 C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a/5ba4631a-55a0-4e2e-a28c-10c1c30aeabf.rna_seq.genomic.gdc_realn.bam 7203899740 BAM hg38 1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a storage1 C3L-02109.RNA-Seq.R1.T C3L-02109 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0143fe73-deea-484e-8fd5-6bdf9fd73640/180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R1_001.fastq.gz 3150820705 FASTQ NA 0143fe73-deea-484e-8fd5-6bdf9fd73640 storage1 C3L-02109.RNA-Seq.R2.T C3L-02109 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02819eb9-c422-4438-a0b7-44bbfbb1bec0/180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R2_001.fastq.gz 3461729862 FASTQ NA 02819eb9-c422-4438-a0b7-44bbfbb1bec0 storage1 @@ -3148,12 +3057,8 @@ C3L-02465.RNA-Seq.chimeric.T.hg38 C3L-02465 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02465.RNA-Seq.R1.T C3L-02465 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac4f58b0-4652-4aba-bba6-62f1cd4660f4/180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R1_001.fastq.gz 4650716263 FASTQ NA ac4f58b0-4652-4aba-bba6-62f1cd4660f4 storage1 C3L-02465.RNA-Seq.R2.T C3L-02465 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/806543ec-69d2-4461-8a3f-bbd40a94ddb2/180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R2_001.fastq.gz 4773241781 FASTQ NA 806543ec-69d2-4461-8a3f-bbd40a94ddb2 storage1 C3L-02465.RNA-Seq.transcriptome.T.hg38 C3L-02465 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7ffa91f-bb41-4b2e-a7ac-9e5bfb8c2625/7df4a1c0-38a7-4a70-b6b7-000f7cc05e3f.rna_seq.transcriptome.gdc_realn.bam 10765192717 BAM hg38 d7ffa91f-bb41-4b2e-a7ac-9e5bfb8c2625 storage1 -C3L-02465.WGS.N C3L-02465 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9555383-4d63-4ec0-ac43-9fe6f82783a2/CPT0124250002.WholeGenome.RP-1303.bam 68413640457 BAM hg19 b9555383-4d63-4ec0-ac43-9fe6f82783a2 storage1 C3L-02465.WGS.N.hg38 C3L-02465 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28431047-9ed6-4c05-85be-cca99883ae97/f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wgs_gdc_realn.bam 100401110014 BAM hg38 28431047-9ed6-4c05-85be-cca99883ae97 storage1 -C3L-02465.WGS.T C3L-02465 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a462e70f-701b-4d8a-b014-8e3e6e75c068/CPT0125570009.WholeGenome.RP-1303.bam 55547769252 BAM hg19 a462e70f-701b-4d8a-b014-8e3e6e75c068 storage1 C3L-02465.WGS.T.hg38 C3L-02465 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e919b6c7-d76f-44c1-a86f-7c732fce8858/953ddd78-016b-47f4-8708-054f23481a45_wgs_gdc_realn.bam 80756863359 BAM hg38 e919b6c7-d76f-44c1-a86f-7c732fce8858 storage1 -C3L-02465.WXS.N C3L-02465 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/393ed771-7f85-49a7-9dbe-112f33630e26/CPT0124250002.WholeExome.RP-1303.bam 25403229812 BAM hg19 393ed771-7f85-49a7-9dbe-112f33630e26 storage1 -C3L-02465.WXS.T C3L-02465 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35065904-4c09-4bd5-91e0-1be879f75827/CPT0125570009.WholeExome.RP-1303.bam 24485468319 BAM hg19 35065904-4c09-4bd5-91e0-1be879f75827 storage1 C3L-02468.RNA-Seq.R1.A C3L-02468 UCEC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58ab7a47-f657-44d3-b62b-41bf5f3810c3/190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R1_001.fastq.gz 4057572434 FASTQ NA 58ab7a47-f657-44d3-b62b-41bf5f3810c3 storage1 C3L-02468.RNA-Seq.R1.T C3L-02468 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03e743a3-9e1d-4b19-876d-8aca16db36a6/181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3538324955 FASTQ NA 03e743a3-9e1d-4b19-876d-8aca16db36a6 storage1 C3L-02468.RNA-Seq.R1.T C3L-02468 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d845a2c-7ceb-4d1d-9b29-11cf261142fc/20210714_P1_B6_WB7988_plate1_S18_R1_001.fastq.gz 8099689554 FASTQ NA 0d845a2c-7ceb-4d1d-9b29-11cf261142fc storage1 @@ -3167,12 +3072,8 @@ C3L-02504.RNA-Seq.chimeric.T.hg38 C3L-02504 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02504.RNA-Seq.R1.T C3L-02504 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/610f16a0-bf50-479f-879e-175a725fbca8/180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R1_001.fastq.gz 3824763022 FASTQ NA 610f16a0-bf50-479f-879e-175a725fbca8 storage1 C3L-02504.RNA-Seq.R2.T C3L-02504 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03bfaa3f-e68a-46a5-90e3-5af109ded101/180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R2_001.fastq.gz 4331599960 FASTQ NA 03bfaa3f-e68a-46a5-90e3-5af109ded101 storage1 C3L-02504.RNA-Seq.transcriptome.T.hg38 C3L-02504 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ca5d39b-0d60-4104-8cc5-c09317387036/71f3dcab-b871-4e7f-b68a-43d27e5840e1.rna_seq.transcriptome.gdc_realn.bam 8478849181 BAM hg38 2ca5d39b-0d60-4104-8cc5-c09317387036 storage1 -C3L-02504.WGS.N C3L-02504 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2d58309-c05c-4593-8ce5-a71a291680d3/CPT0175520002.WholeGenome.RP-1303.bam 64059792273 BAM hg19 f2d58309-c05c-4593-8ce5-a71a291680d3 storage1 C3L-02504.WGS.N.hg38 C3L-02504 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4ff5445-c045-4bd0-80da-bbfb01175a2b/40f6448c-51b7-499e-8c86-300966f87b99_wgs_gdc_realn.bam 91176818503 BAM hg38 d4ff5445-c045-4bd0-80da-bbfb01175a2b storage1 -C3L-02504.WGS.T C3L-02504 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00aad068-846d-4e56-8a4d-c7459f41aa19/CPT0175060006.WholeGenome.RP-1303.bam 62356913341 BAM hg19 00aad068-846d-4e56-8a4d-c7459f41aa19 storage1 C3L-02504.WGS.T.hg38 C3L-02504 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffa548b6-0285-432c-bb41-fd5d5df3b546/df794db3-ed91-4798-a664-49ff826f1131_wgs_gdc_realn.bam 90359529343 BAM hg38 ffa548b6-0285-432c-bb41-fd5d5df3b546 storage1 -C3L-02504.WXS.N C3L-02504 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09677176-e18a-43c9-b505-e452a53f1fc6/CPT0175520002.WholeExome.RP-1303.bam 28884093069 BAM hg19 09677176-e18a-43c9-b505-e452a53f1fc6 storage1 -C3L-02504.WXS.T C3L-02504 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3cca691-ea08-4a2b-9a55-301b3b44543f/CPT0175060006.WholeExome.RP-1303.bam 24975223263 BAM hg19 e3cca691-ea08-4a2b-9a55-301b3b44543f storage1 C3L-02508.RNA-Seq.R1.A C3L-02508 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/754e4fa4-7970-4f97-927b-c5554a581b1f/171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R1_001.fastq.gz 4226756178 FASTQ NA 754e4fa4-7970-4f97-927b-c5554a581b1f storage1 C3L-02508.RNA-Seq.R1.T C3L-02508 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/051c1a4d-3903-4116-96b0-2b43064c545a/171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 3978809521 FASTQ NA 051c1a4d-3903-4116-96b0-2b43064c545a storage1 C3L-02508.RNA-Seq.R2.A C3L-02508 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c62c71c6-583b-4436-a075-f79dc12be2ff/171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R2_001.fastq.gz 4225613884 FASTQ NA c62c71c6-583b-4436-a075-f79dc12be2ff storage1 @@ -3196,12 +3097,8 @@ C3L-02542.RNA-Seq.chimeric.T.hg38 C3L-02542 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02542.RNA-Seq.R1.T C3L-02542 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/148dde8b-7f53-4016-9aef-da06c36753a1/180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3905074445 FASTQ NA 148dde8b-7f53-4016-9aef-da06c36753a1 storage1 C3L-02542.RNA-Seq.R2.T C3L-02542 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6009fd4-a604-4924-a56b-4894e2db69d1/180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 4239373564 FASTQ NA d6009fd4-a604-4924-a56b-4894e2db69d1 storage1 C3L-02542.RNA-Seq.transcriptome.T.hg38 C3L-02542 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66c6070f-00bf-4a63-a92f-41f196252618/5d9c5c93-6e90-4703-a956-0c1127804984.rna_seq.transcriptome.gdc_realn.bam 8386509096 BAM hg38 66c6070f-00bf-4a63-a92f-41f196252618 storage1 -C3L-02542.WGS.N C3L-02542 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e24da890-be79-4367-acf3-4460e864ecfe/CPT0162540002.WholeGenome.RP-1303.bam 53592597788 BAM hg19 e24da890-be79-4367-acf3-4460e864ecfe storage1 C3L-02542.WGS.N.hg38 C3L-02542 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5daa535-65cf-4f16-9101-9694dbe04250/daa74a11-fa31-4edd-9735-67188296ef8a_wgs_gdc_realn.bam 77449398479 BAM hg38 b5daa535-65cf-4f16-9101-9694dbe04250 storage1 -C3L-02542.WGS.T C3L-02542 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea21c3cd-3461-4a36-81ec-c124016a85ac/CPT0161730006.WholeGenome.RP-1303.bam 65997826276 BAM hg19 ea21c3cd-3461-4a36-81ec-c124016a85ac storage1 C3L-02542.WGS.T.hg38 C3L-02542 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25c37631-c529-48a3-936d-cc1d4e9d507e/ebd8c827-69e4-4261-a40b-05acc7a4ae5f_wgs_gdc_realn.bam 96691082498 BAM hg38 25c37631-c529-48a3-936d-cc1d4e9d507e storage1 -C3L-02542.WXS.N C3L-02542 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8eff7af2-6b0f-4f30-b44b-30184c86416f/CPT0162540002.WholeExome.RP-1303.bam 37304589615 BAM hg19 8eff7af2-6b0f-4f30-b44b-30184c86416f storage1 -C3L-02542.WXS.T C3L-02542 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bb5089a-a9b5-4d53-912d-e45b9e2d11c7/CPT0161730006.WholeExome.RP-1303.bam 27924046819 BAM hg19 8bb5089a-a9b5-4d53-912d-e45b9e2d11c7 storage1 C3L-02544.RNA-Seq.R1.A C3L-02544 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c7eb3e8-82ba-4343-a042-072fcc3794ff/190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R1_001.fastq.gz 3997638933 FASTQ NA 1c7eb3e8-82ba-4343-a042-072fcc3794ff storage1 C3L-02544.RNA-Seq.R1.T C3L-02544 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4cfc0a2-2492-41cb-9568-a4f46275642a/181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3471671038 FASTQ NA d4cfc0a2-2492-41cb-9568-a4f46275642a storage1 C3L-02544.RNA-Seq.R2.A C3L-02544 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f526c9ce-0d0f-4a65-869d-2706062c141e/190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R2_001.fastq.gz 4220000969 FASTQ NA f526c9ce-0d0f-4a65-869d-2706062c141e storage1 @@ -3397,12 +3294,8 @@ C3L-02642.RNA-Seq.chimeric.T.hg38 C3L-02642 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02642.RNA-Seq.R1.T C3L-02642 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4334c783-04ef-40ab-9904-68713ce55e58/180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3672568158 FASTQ NA 4334c783-04ef-40ab-9904-68713ce55e58 storage1 C3L-02642.RNA-Seq.R2.T C3L-02642 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7cc72175-22fd-41bc-a316-523ce9741ad2/180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3778707964 FASTQ NA 7cc72175-22fd-41bc-a316-523ce9741ad2 storage1 C3L-02642.RNA-Seq.transcriptome.T.hg38 C3L-02642 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cac8b5c-46b0-481e-b39d-0fbdaa0ff99b/71d3f3ec-6a82-4497-895c-86cd6b27ea44.rna_seq.transcriptome.gdc_realn.bam 7928274711 BAM hg38 5cac8b5c-46b0-481e-b39d-0fbdaa0ff99b storage1 -C3L-02642.WGS.N C3L-02642 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/771c1507-2100-4447-b0f0-626321e4e281/CPT0201790002.WholeGenome.RP-1303.bam 67862526661 BAM hg19 771c1507-2100-4447-b0f0-626321e4e281 storage1 C3L-02642.WGS.N.hg38 C3L-02642 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a033ca3-1a89-4818-9753-e11146c7efa7/e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wgs_gdc_realn.bam 99147007103 BAM hg38 6a033ca3-1a89-4818-9753-e11146c7efa7 storage1 -C3L-02642.WGS.T C3L-02642 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c77de080-567b-46ff-807a-7b2690986d5b/CPT0201710006.WholeGenome.RP-1303.bam 57205910103 BAM hg19 c77de080-567b-46ff-807a-7b2690986d5b storage1 C3L-02642.WGS.T.hg38 C3L-02642 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f184872-61e0-4f80-8648-06a2250657ec/0e2478b9-f3b8-4b16-a88a-60fb7ebd30db_wgs_gdc_realn.bam 84095405766 BAM hg38 7f184872-61e0-4f80-8648-06a2250657ec storage1 -C3L-02642.WXS.N C3L-02642 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9497a007-0744-4012-9340-6e72469a3b90/CPT0201790002.WholeExome.RP-1303.bam 22664492576 BAM hg19 9497a007-0744-4012-9340-6e72469a3b90 storage1 -C3L-02642.WXS.T C3L-02642 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4cedea4-c592-48c5-9704-03117b4f0ac8/CPT0201710006.WholeExome.RP-1303.bam 33972712303 BAM hg19 f4cedea4-c592-48c5-9704-03117b4f0ac8 storage1 C3L-02643.RNA-Seq.R1.A C3L-02643 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6383ee73-3338-4b7e-8969-1df003fb8f2a/190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R1_001.fastq.gz 4036861909 FASTQ NA 6383ee73-3338-4b7e-8969-1df003fb8f2a storage1 C3L-02643.RNA-Seq.R1.T C3L-02643 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34430823-5630-4f94-80ed-4191d1abd67d/190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R1_001.fastq.gz 3293591724 FASTQ NA 34430823-5630-4f94-80ed-4191d1abd67d storage1 C3L-02643.RNA-Seq.R2.A C3L-02643 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92f0abf9-21bf-4dd3-a3ad-83c13df95348/190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R2_001.fastq.gz 4514638201 FASTQ NA 92f0abf9-21bf-4dd3-a3ad-83c13df95348 storage1 @@ -3413,13 +3306,9 @@ C3L-02644.RNA-Seq.R1.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-02644.RNA-Seq.R1.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7a4ea3c-9561-401b-9378-7ec621b038ea/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R1_001.fastq.gz 3584181669 FASTQ NA e7a4ea3c-9561-401b-9378-7ec621b038ea storage1 C3L-02644.RNA-Seq.R2.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10aec24b-bc0f-4ee3-9179-a94b8da520f4/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ NA 10aec24b-bc0f-4ee3-9179-a94b8da520f4 storage1 C3L-02644.RNA-Seq.R2.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10aec24b-bc0f-4ee3-9179-a94b8da520f4/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ NA 10aec24b-bc0f-4ee3-9179-a94b8da520f4 storage1 -C3L-02644.WGS.N C3L-02644 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91b131b2-0290-462e-b311-60d4e39aba78/CPT0227900002.WholeGenome.RP-2158.bam 26226631010 BAM hg19 91b131b2-0290-462e-b311-60d4e39aba78 storage1 C3L-02644.WGS.N.hg38 C3L-02644 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45a5b3d6-b371-4bf2-8477-3e06f8b6cb56/6cdbd613-0752-40a2-9347-582356daf34f_wgs_gdc_realn.bam 76860325745 BAM hg38 45a5b3d6-b371-4bf2-8477-3e06f8b6cb56 storage1 -C3L-02644.WGS.T C3L-02644 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a13b5822-be39-4ba1-9f54-902e9df06f95/CPT0227810007.WholeGenome.RP-2158.bam 27527064714 BAM hg19 a13b5822-be39-4ba1-9f54-902e9df06f95 storage1 C3L-02644.WGS.T.hg38 C3L-02644 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fac8453c-2278-4a7a-8cca-571fb949d33e/46bef5ac-320b-47da-8f0b-ba57db403534_wgs_gdc_realn.bam 83884571975 BAM hg38 fac8453c-2278-4a7a-8cca-571fb949d33e storage1 -C3L-02644.WXS.N C3L-02644 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc2e0bde-e7ba-4acb-8f99-eebdbb532cda/CPT0227900002.WholeExome.RP-1303.bam 27011094237 BAM hg19 fc2e0bde-e7ba-4acb-8f99-eebdbb532cda storage1 C3L-02644.WXS.N.hg38 C3L-02644 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d691a770-edf9-435f-9288-c9139d4c9f4c/6cdbd613-0752-40a2-9347-582356daf34f_wxs_gdc_realn.bam 37600543856 BAM hg38 d691a770-edf9-435f-9288-c9139d4c9f4c storage1 -C3L-02644.WXS.T C3L-02644 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64803679-490c-4aa5-8cb4-dc077cf3c19a/CPT0227810007.WholeExome.RP-1303.bam 16766796957 BAM hg19 64803679-490c-4aa5-8cb4-dc077cf3c19a storage1 C3L-02644.WXS.T.hg38 C3L-02644 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e996952c-e610-4e7e-af08-31671e9e9d7b/46bef5ac-320b-47da-8f0b-ba57db403534_wxs_gdc_realn.bam 23551420409 BAM hg38 e996952c-e610-4e7e-af08-31671e9e9d7b storage1 C3L-02646.RNA-Seq.R1.T C3L-02646 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36760be8-bc8c-4f1f-bbb5-e7666c6d80ac/190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R1_001.fastq.gz 3114636179 FASTQ NA 36760be8-bc8c-4f1f-bbb5-e7666c6d80ac storage1 C3L-02646.RNA-Seq.R2.T C3L-02646 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d90d060a-db2c-4010-bb49-fb57929dd7f9/190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R2_001.fastq.gz 3369137067 FASTQ NA d90d060a-db2c-4010-bb49-fb57929dd7f9 storage1 @@ -3476,13 +3365,9 @@ C3L-02662.RNA-Seq.R1.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-02662.RNA-Seq.R1.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/356afdb9-db72-4527-92b6-80619daf6746/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R1_001.fastq.gz 2651283628 FASTQ NA 356afdb9-db72-4527-92b6-80619daf6746 storage1 C3L-02662.RNA-Seq.R2.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45e95154-6823-4405-a610-9a42d4bc5f10/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ NA 45e95154-6823-4405-a610-9a42d4bc5f10 storage1 C3L-02662.RNA-Seq.R2.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45e95154-6823-4405-a610-9a42d4bc5f10/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ NA 45e95154-6823-4405-a610-9a42d4bc5f10 storage1 -C3L-02662.WGS.N C3L-02662 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cc40b60-9b11-429c-8f10-f679c36a10fc/CPT0267300002.WholeGenome.RP-2158.bam 27090249079 BAM hg19 6cc40b60-9b11-429c-8f10-f679c36a10fc storage1 C3L-02662.WGS.N.hg38 C3L-02662 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfb3b98e-daac-48dc-bd69-85c8886a45c5/ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wgs_gdc_realn.bam 81374312262 BAM hg38 bfb3b98e-daac-48dc-bd69-85c8886a45c5 storage1 -C3L-02662.WGS.T C3L-02662 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8af676a8-afcb-4679-81a6-934725ebdbdb/CPT0267260007.WholeGenome.RP-2158.bam 27579170879 BAM hg19 8af676a8-afcb-4679-81a6-934725ebdbdb storage1 C3L-02662.WGS.T.hg38 C3L-02662 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3462153-48c2-4ced-9b84-4179b0f08cb3/48a74119-daeb-4577-9c10-649d7d71f72e_wgs_gdc_realn.bam 81794446548 BAM hg38 c3462153-48c2-4ced-9b84-4179b0f08cb3 storage1 -C3L-02662.WXS.N C3L-02662 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11e768f6-702e-4217-9405-d7e2e8b3549a/CPT0267300002.WholeExome.RP-1303.bam 32172440712 BAM hg19 11e768f6-702e-4217-9405-d7e2e8b3549a storage1 C3L-02662.WXS.N.hg38 C3L-02662 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/483ee610-f803-4aa9-953c-6d1a197e0e8e/ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wxs_gdc_realn.bam 43541229598 BAM hg38 483ee610-f803-4aa9-953c-6d1a197e0e8e storage1 -C3L-02662.WXS.T C3L-02662 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/548aa728-a7c4-4fd3-b9a1-56debfc0fb08/CPT0267260007.WholeExome.RP-1303.bam 18842860859 BAM hg19 548aa728-a7c4-4fd3-b9a1-56debfc0fb08 storage1 C3L-02662.WXS.T.hg38 C3L-02662 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77333b37-7fa5-4ebf-b262-6d92a3d5aef3/48a74119-daeb-4577-9c10-649d7d71f72e_wxs_gdc_realn.bam 26349424274 BAM hg38 77333b37-7fa5-4ebf-b262-6d92a3d5aef3 storage1 C3L-02665.RNA-Seq.R1.A C3L-02665 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f8d52cb-6616-49c1-8335-2b70f90ecbb8/190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R1_001.fastq.gz 4523020406 FASTQ NA 4f8d52cb-6616-49c1-8335-2b70f90ecbb8 storage1 C3L-02665.RNA-Seq.R1.T C3L-02665 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/911034e6-d213-4670-aa95-42621a8126b8/190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4358670008 FASTQ NA 911034e6-d213-4670-aa95-42621a8126b8 storage1 @@ -3507,22 +3392,14 @@ C3L-02704.RNA-Seq.chimeric.T.hg38 C3L-02704 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02704.RNA-Seq.R1.T C3L-02704 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3d39428-6703-4d2b-b5d7-246b40fbf69a/181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 2928245025 FASTQ NA a3d39428-6703-4d2b-b5d7-246b40fbf69a storage1 C3L-02704.RNA-Seq.R2.T C3L-02704 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba57ec8b-f0e7-4a29-be8c-069fe59c0721/181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3086328739 FASTQ NA ba57ec8b-f0e7-4a29-be8c-069fe59c0721 storage1 C3L-02704.RNA-Seq.transcriptome.T.hg38 C3L-02704 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08738bc8-183e-468e-9917-d81f72299f97/315aafd7-94b8-463c-9fc1-7f05dc43b395.rna_seq.transcriptome.gdc_realn.bam 6605174852 BAM hg38 08738bc8-183e-468e-9917-d81f72299f97 storage1 -C3L-02704.WGS.N C3L-02704 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88268abe-703d-4b4d-bd40-fa3a225b9c64/CPT0190660002.WholeGenome.RP-1303.bam 71105654131 BAM hg19 88268abe-703d-4b4d-bd40-fa3a225b9c64 storage1 C3L-02704.WGS.N.hg38 C3L-02704 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c528b0b-1718-40ef-9a3d-a5380193191c/1c6e61d2-277c-4f6a-be33-abc32bc1ab3e_wgs_gdc_realn.bam 101670983024 BAM hg38 7c528b0b-1718-40ef-9a3d-a5380193191c storage1 -C3L-02704.WGS.T C3L-02704 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30757d38-bd1a-42cd-a079-c0d257a3dcc6/CPT0189750007.WholeGenome.RP-1303.bam 63184966428 BAM hg19 30757d38-bd1a-42cd-a079-c0d257a3dcc6 storage1 C3L-02704.WGS.T.hg38 C3L-02704 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e26c1848-6bd1-4b4b-8bd0-791b69f45900/8e4b5a6a-fdac-4c85-aa19-e5bb3b250c03_wgs_gdc_realn.bam 91618904423 BAM hg38 e26c1848-6bd1-4b4b-8bd0-791b69f45900 storage1 -C3L-02704.WXS.N C3L-02704 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20cce083-7185-42df-8b2f-ece9e01b513f/CPT0190660002.WholeExome.RP-1303.bam 20791123513 BAM hg19 20cce083-7185-42df-8b2f-ece9e01b513f storage1 -C3L-02704.WXS.T C3L-02704 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eaa249e0-0391-430a-b739-50c189e6a950/CPT0189750007.WholeExome.RP-1303.bam 20935431504 BAM hg19 eaa249e0-0391-430a-b739-50c189e6a950 storage1 C3L-02705.RNA-Seq.chimeric.T.hg38 C3L-02705 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa5c705b-012b-404d-b5c7-3e63640a81a3/ebbf2f51-93d0-43f4-bee0-fa52858127eb.rna_seq.chimeric.gdc_realn.bam 100517839 BAM hg38 fa5c705b-012b-404d-b5c7-3e63640a81a3 storage1 C3L-02705.RNA-Seq.R1.T C3L-02705 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31ad97f9-8f0a-4939-9b27-aeecc345925d/181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3323782301 FASTQ NA 31ad97f9-8f0a-4939-9b27-aeecc345925d storage1 C3L-02705.RNA-Seq.R2.T C3L-02705 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/593ce048-3cf6-4a27-8c02-e81b2b48d95f/181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3599944937 FASTQ NA 593ce048-3cf6-4a27-8c02-e81b2b48d95f storage1 C3L-02705.RNA-Seq.transcriptome.T.hg38 C3L-02705 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60a89a72-d423-4eef-89d0-acee416cc7e0/ebbf2f51-93d0-43f4-bee0-fa52858127eb.rna_seq.transcriptome.gdc_realn.bam 7149920268 BAM hg38 60a89a72-d423-4eef-89d0-acee416cc7e0 storage1 -C3L-02705.WGS.N C3L-02705 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6218ca2a-3ec4-4ef6-83a3-ae00c9d83d12/CPT0190640002.WholeGenome.RP-1303.bam 55336589099 BAM hg19 6218ca2a-3ec4-4ef6-83a3-ae00c9d83d12 storage1 C3L-02705.WGS.N.hg38 C3L-02705 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54197100-227c-4760-9df9-5c9f6e7df598/a820c7e7-180a-47e8-ad00-12e32236bbdf_wgs_gdc_realn.bam 80337375536 BAM hg38 54197100-227c-4760-9df9-5c9f6e7df598 storage1 -C3L-02705.WGS.T C3L-02705 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9127722a-7be2-446a-8639-7759914ab1f2/CPT0189650007.WholeGenome.RP-1303.bam 62119934828 BAM hg19 9127722a-7be2-446a-8639-7759914ab1f2 storage1 C3L-02705.WGS.T.hg38 C3L-02705 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b07e964-cdcf-4556-a369-372532307df2/07ff70d4-4e47-4ed0-8f19-32be9fe53cf1_wgs_gdc_realn.bam 89834325696 BAM hg38 5b07e964-cdcf-4556-a369-372532307df2 storage1 -C3L-02705.WXS.N C3L-02705 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ace72054-6526-4d3a-9533-911155e4464e/CPT0190640002.WholeExome.RP-1303.bam 23921223199 BAM hg19 ace72054-6526-4d3a-9533-911155e4464e storage1 -C3L-02705.WXS.T C3L-02705 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9f72d80-1d36-4c66-9e10-739c0bb00d26/CPT0189650007.WholeExome.RP-1303.bam 24686699586 BAM hg19 c9f72d80-1d36-4c66-9e10-739c0bb00d26 storage1 C3L-02706.RNA-Seq.R1.T C3L-02706 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89b695ac-d4e9-4449-9e46-18dd3b95dd2f/190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3577817850 FASTQ NA 89b695ac-d4e9-4449-9e46-18dd3b95dd2f storage1 C3L-02706.RNA-Seq.R2.T C3L-02706 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b7ebdc9-1b68-4257-b5d8-6c53874971c7/190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3658901575 FASTQ NA 4b7ebdc9-1b68-4257-b5d8-6c53874971c7 storage1 C3L-02706.WGS.N.hg38 C3L-02706 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5864910a-3263-423a-ad31-5d2638cac474/755e756f-026d-41db-b701-7dee13a7f30a_wgs_gdc_realn.bam 95185893534 BAM hg38 5864910a-3263-423a-ad31-5d2638cac474 storage1 @@ -3531,22 +3408,14 @@ C3L-02707.RNA-Seq.chimeric.T.hg38 C3L-02707 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02707.RNA-Seq.R1.T C3L-02707 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86aa2222-5a98-4edf-a4a1-4b1b2cebc0d8/181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3065849813 FASTQ NA 86aa2222-5a98-4edf-a4a1-4b1b2cebc0d8 storage1 C3L-02707.RNA-Seq.R2.T C3L-02707 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c3ce60e-8c59-48b3-b7bf-64d8d7316fbc/181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 3352987257 FASTQ NA 5c3ce60e-8c59-48b3-b7bf-64d8d7316fbc storage1 C3L-02707.RNA-Seq.transcriptome.T.hg38 C3L-02707 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91891f5e-345f-4b52-a8b6-5721883efd81/33a6bb0f-d5a4-4c8a-85fd-d65f457e3df8.rna_seq.transcriptome.gdc_realn.bam 5728171342 BAM hg38 91891f5e-345f-4b52-a8b6-5721883efd81 storage1 -C3L-02707.WGS.N C3L-02707 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0aca9d3-1392-4671-baa1-d81c3cacbaf1/CPT0190680002.WholeGenome.RP-1303.bam 60440234641 BAM hg19 e0aca9d3-1392-4671-baa1-d81c3cacbaf1 storage1 C3L-02707.WGS.N.hg38 C3L-02707 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7baf3007-3a7a-4baf-86c0-95e2232f4291/5d4b375a-b83e-417f-b1f4-c4abe77a2ace_wgs_gdc_realn.bam 88170424738 BAM hg38 7baf3007-3a7a-4baf-86c0-95e2232f4291 storage1 -C3L-02707.WGS.T C3L-02707 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d060077c-46e6-40af-8587-f7962ef68d51/CPT0189850007.WholeGenome.RP-1303.bam 57357982445 BAM hg19 d060077c-46e6-40af-8587-f7962ef68d51 storage1 C3L-02707.WGS.T.hg38 C3L-02707 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be571f73-e5d0-4922-965e-bc6c5f7d3d1e/a6b4f8b7-1b47-4773-9ffe-e9392779cd57_wgs_gdc_realn.bam 84148083314 BAM hg38 be571f73-e5d0-4922-965e-bc6c5f7d3d1e storage1 -C3L-02707.WXS.N C3L-02707 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc867051-b17d-49be-893c-e3f463d40a6d/CPT0190680002.WholeExome.RP-1303.bam 27534432017 BAM hg19 bc867051-b17d-49be-893c-e3f463d40a6d storage1 -C3L-02707.WXS.T C3L-02707 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d00ef43-3e90-4448-992d-0abdb37a469f/CPT0189850007.WholeExome.RP-1303.bam 22992307854 BAM hg19 9d00ef43-3e90-4448-992d-0abdb37a469f storage1 C3L-02708.RNA-Seq.chimeric.T.hg38 C3L-02708 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d874a0af-fe06-40dc-bd8b-99104158e1a4/a3a08d90-62f5-4097-b289-9e5470a921bb.rna_seq.chimeric.gdc_realn.bam 150266374 BAM hg38 d874a0af-fe06-40dc-bd8b-99104158e1a4 storage1 C3L-02708.RNA-Seq.R1.T C3L-02708 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/096c41c4-c85b-4617-9334-4d1c4501e59d/181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 4345690373 FASTQ NA 096c41c4-c85b-4617-9334-4d1c4501e59d storage1 C3L-02708.RNA-Seq.R2.T C3L-02708 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cd8f085-f849-4d31-88f5-dca6ffae2523/181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4718587824 FASTQ NA 5cd8f085-f849-4d31-88f5-dca6ffae2523 storage1 C3L-02708.RNA-Seq.transcriptome.T.hg38 C3L-02708 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09cbc0e4-d1ed-4609-b153-7512480ca774/a3a08d90-62f5-4097-b289-9e5470a921bb.rna_seq.transcriptome.gdc_realn.bam 7931472499 BAM hg38 09cbc0e4-d1ed-4609-b153-7512480ca774 storage1 -C3L-02708.WGS.N C3L-02708 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a92fa05a-311a-4552-8b0b-e0f34bf47cfa/CPT0190620002.WholeGenome.RP-1303.bam 65812188063 BAM hg19 a92fa05a-311a-4552-8b0b-e0f34bf47cfa storage1 C3L-02708.WGS.N.hg38 C3L-02708 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2c47d0e-a53e-49e9-b3ed-f22d8804ca29/2425979c-83fa-4c6b-a510-2efbadb018aa_wgs_gdc_realn.bam 95071768833 BAM hg38 f2c47d0e-a53e-49e9-b3ed-f22d8804ca29 storage1 -C3L-02708.WGS.T C3L-02708 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b69de777-11cb-48e1-b14f-980cdffa29a6/CPT0189570007.WholeGenome.RP-1303.bam 58008736343 BAM hg19 b69de777-11cb-48e1-b14f-980cdffa29a6 storage1 C3L-02708.WGS.T.hg38 C3L-02708 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87dbd50f-3269-44f5-af60-29c0a6e39b6e/15a8ff7c-4a6d-4c89-ba29-1ddc51583f5c_wgs_gdc_realn.bam 82438224320 BAM hg38 87dbd50f-3269-44f5-af60-29c0a6e39b6e storage1 -C3L-02708.WXS.N C3L-02708 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd571367-4faa-484a-b3af-831860e9654e/CPT0190620002.WholeExome.RP-1303.bam 27463502847 BAM hg19 cd571367-4faa-484a-b3af-831860e9654e storage1 -C3L-02708.WXS.T C3L-02708 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ce9d9c2-99f5-4e0f-8110-9a1dc7c5f967/CPT0189570007.WholeExome.RP-1303.bam 31507578969 BAM hg19 1ce9d9c2-99f5-4e0f-8110-9a1dc7c5f967 storage1 C3L-02741.RNA-Seq.R1.T C3L-02741 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b6df366-157d-44c2-ac01-ce3f4dfc59ce/190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R1_001.fastq.gz 3407301989 FASTQ NA 8b6df366-157d-44c2-ac01-ce3f4dfc59ce storage1 C3L-02741.RNA-Seq.R1.T C3L-02741 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fea63445-8062-4de8-b135-3bc8abb87038/20210729_P3_C9_WB7988-Plate3_S33_R1_001.fastq.gz 7289862853 FASTQ NA fea63445-8062-4de8-b135-3bc8abb87038 storage1 C3L-02741.RNA-Seq.R2.T C3L-02741 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a0d4a66-5975-440b-97bf-4fb195a27398/20210729_P3_C9_WB7988-Plate3_S33_R2_001.fastq.gz 7675178438 FASTQ NA 2a0d4a66-5975-440b-97bf-4fb195a27398 storage1 @@ -3681,12 +3550,8 @@ C3L-02900.RNA-Seq.chimeric.T.hg38 C3L-02900 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02900.RNA-Seq.R1.T C3L-02900 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ce9d64d7-7245-43fc-b9c3-83b8099af70c/180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R1_001.fastq.gz 3747926637 FASTQ NA ce9d64d7-7245-43fc-b9c3-83b8099af70c storage1 C3L-02900.RNA-Seq.R2.T C3L-02900 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed8d7108-a0fc-4c05-88c7-b36c2a46344f/180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R2_001.fastq.gz 3922660448 FASTQ NA ed8d7108-a0fc-4c05-88c7-b36c2a46344f storage1 C3L-02900.RNA-Seq.transcriptome.T.hg38 C3L-02900 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0141eda0-eb36-4366-8ef9-1f1e7d4c243a/19731962-7807-4792-a519-8f93504900d5.rna_seq.transcriptome.gdc_realn.bam 8415243299 BAM hg38 0141eda0-eb36-4366-8ef9-1f1e7d4c243a storage1 -C3L-02900.WGS.N C3L-02900 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57efdbaa-b7f4-4402-8a43-11053f1b6b91/CPT0219910002.WholeGenome.RP-1303.bam 65972536465 BAM hg19 57efdbaa-b7f4-4402-8a43-11053f1b6b91 storage1 C3L-02900.WGS.N.hg38 C3L-02900 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ac20d11-64f1-4a61-9d85-5b7463206ccd/6264f251-942e-4eb8-a787-58c3a28a6d66_wgs_gdc_realn.bam 95457873554 BAM hg38 6ac20d11-64f1-4a61-9d85-5b7463206ccd storage1 -C3L-02900.WGS.T C3L-02900 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a7fd2377-4d75-4538-9da4-f6e11de7edf7/CPT0218670006.WholeGenome.RP-1303.bam 64537343313 BAM hg19 a7fd2377-4d75-4538-9da4-f6e11de7edf7 storage1 C3L-02900.WGS.T.hg38 C3L-02900 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abca7dea-8322-4871-b75c-51642cccd475/31973fc9-0507-456d-be4a-1a696ea3cf34_wgs_gdc_realn.bam 94007884048 BAM hg38 abca7dea-8322-4871-b75c-51642cccd475 storage1 -C3L-02900.WXS.N C3L-02900 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61deac03-1e86-452f-b3d8-3fb09b54e40f/CPT0219910002.WholeExome.RP-1303.bam 23770184168 BAM hg19 61deac03-1e86-452f-b3d8-3fb09b54e40f storage1 -C3L-02900.WXS.T C3L-02900 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27b62d6d-444b-4dee-9afd-eacb6a77ea09/CPT0218670006.WholeExome.RP-1303.bam 20935138758 BAM hg19 27b62d6d-444b-4dee-9afd-eacb6a77ea09 storage1 C3L-02951.RNA-Seq.R1.A C3L-02951 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52ed1a7a-21a2-4723-9c10-f9ab61ebded1/180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R1_001.fastq.gz 3733021017 FASTQ NA 52ed1a7a-21a2-4723-9c10-f9ab61ebded1 storage1 C3L-02951.RNA-Seq.R1.T C3L-02951 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/516c640a-c178-4bd0-87e8-203ae1af4ff3/181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R1_001.fastq.gz 3824514385 FASTQ NA 516c640a-c178-4bd0-87e8-203ae1af4ff3 storage1 C3L-02951.RNA-Seq.R2.A C3L-02951 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdbb3ee9-6312-4094-913d-ad95d73301b0/180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R2_001.fastq.gz 3719756463 FASTQ NA fdbb3ee9-6312-4094-913d-ad95d73301b0 storage1 @@ -3710,12 +3575,8 @@ C3L-02955.RNA-Seq.chimeric.T.hg38 C3L-02955 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02955.RNA-Seq.R1.T C3L-02955 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7789396-db2e-4d22-834a-b310021a57ee/181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R1_001.fastq.gz 4173598325 FASTQ NA e7789396-db2e-4d22-834a-b310021a57ee storage1 C3L-02955.RNA-Seq.R2.T C3L-02955 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe6a58b1-0a07-44f2-b4c1-606ea06a5158/181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R2_001.fastq.gz 4407032916 FASTQ NA fe6a58b1-0a07-44f2-b4c1-606ea06a5158 storage1 C3L-02955.RNA-Seq.transcriptome.T.hg38 C3L-02955 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b46197a4-3c8b-4050-baca-a9a4b297f35d/17bad412-a9a3-4b33-b5ee-82f689996b4e.rna_seq.transcriptome.gdc_realn.bam 11066521717 BAM hg38 b46197a4-3c8b-4050-baca-a9a4b297f35d storage1 -C3L-02955.WGS.N C3L-02955 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16388570-a5b3-4e44-a7e8-02c20921bc71/CPT0197750002.WholeGenome.RP-1303.bam 76394448497 BAM hg19 16388570-a5b3-4e44-a7e8-02c20921bc71 storage1 C3L-02955.WGS.N.hg38 C3L-02955 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4926ea1-e97c-4cdd-a27f-720fdb5e33f2/abef83c1-3c22-4357-9f48-a52ead2d1c6a_wgs_gdc_realn.bam 109886067285 BAM hg38 f4926ea1-e97c-4cdd-a27f-720fdb5e33f2 storage1 -C3L-02955.WGS.T C3L-02955 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2ff5ad9-b91d-46d0-8e54-9519f4668fd1/CPT0196850009.WholeGenome.RP-1303.bam 55020546674 BAM hg19 a2ff5ad9-b91d-46d0-8e54-9519f4668fd1 storage1 C3L-02955.WGS.T.hg38 C3L-02955 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6269ec0f-cd4d-49a9-8819-2ce342e3ea13/7258c996-c299-4b53-93bf-85df20425431_wgs_gdc_realn.bam 80028595525 BAM hg38 6269ec0f-cd4d-49a9-8819-2ce342e3ea13 storage1 -C3L-02955.WXS.N C3L-02955 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c32f2b0-f25b-47b3-bd21-19c0bcd6b297/CPT0197750002.WholeExome.RP-1303.bam 44694030957 BAM hg19 7c32f2b0-f25b-47b3-bd21-19c0bcd6b297 storage1 -C3L-02955.WXS.T C3L-02955 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/478ed93d-e81d-4ee1-af82-d3fa85ce933a/CPT0196850009.WholeExome.RP-1303.bam 23009684162 BAM hg19 478ed93d-e81d-4ee1-af82-d3fa85ce933a storage1 C3L-02956.RNA-Seq.R1.A C3L-02956 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3fa608a8-5123-4c13-83a6-ac19c44a8c6f/220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R1_001.fastq.gz 3365077576 FASTQ NA 3fa608a8-5123-4c13-83a6-ac19c44a8c6f storage1 C3L-02956.RNA-Seq.R1.T.BIOTEXT_NQOjom C3L-02956 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a392860-e58e-418e-b55f-a3bf63e70609/200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R1_001.fastq.gz 3329611166 FASTQ NA 0a392860-e58e-418e-b55f-a3bf63e70609 storage1 C3L-02956.RNA-Seq.R1.T C3L-02956 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/362ffe9e-e45c-46c4-a6a9-f2e069be19aa/220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R1_001.fastq.gz 3942741206 FASTQ NA 362ffe9e-e45c-46c4-a6a9-f2e069be19aa storage1 @@ -3783,22 +3644,14 @@ C3L-02970.RNA-Seq.chimeric.T.hg38 C3L-02970 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02970.RNA-Seq.R1.T C3L-02970 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0575a3ab-ff1b-430d-b198-d5fcbec93b3d/190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3532091453 FASTQ NA 0575a3ab-ff1b-430d-b198-d5fcbec93b3d storage1 C3L-02970.RNA-Seq.R2.T C3L-02970 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f099332e-d453-47ee-a342-6e94fde94579/190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4011276075 FASTQ NA f099332e-d453-47ee-a342-6e94fde94579 storage1 C3L-02970.RNA-Seq.transcriptome.T.hg38 C3L-02970 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98635230-4659-4ec3-9ec9-80e961c7b7fb/215ee23f-0bee-4208-a70d-f188b8d73b79.rna_seq.transcriptome.gdc_realn.bam 7338970743 BAM hg38 98635230-4659-4ec3-9ec9-80e961c7b7fb storage1 -C3L-02970.WGS.N C3L-02970 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b88503d-132d-4d1e-bc97-11b3050a469c/CPT0219880002.WholeGenome.RP-1303.bam 60078628961 BAM hg19 6b88503d-132d-4d1e-bc97-11b3050a469c storage1 C3L-02970.WGS.N.hg38 C3L-02970 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e191426-5a5f-4ae1-8f35-4abfe09561ca/61b7727d-fa5b-4787-8df0-c1c0e0662f06_wgs_gdc_realn.bam 88065989978 BAM hg38 6e191426-5a5f-4ae1-8f35-4abfe09561ca storage1 -C3L-02970.WGS.T C3L-02970 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/317146df-ce2c-4d46-9b22-91ccef66e6c9/CPT0217880006.WholeGenome.RP-1303.bam 57695348223 BAM hg19 317146df-ce2c-4d46-9b22-91ccef66e6c9 storage1 C3L-02970.WGS.T.hg38 C3L-02970 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ff31d83-efad-4f1c-becc-9139d5cd9ad6/425c32f8-8376-440c-9f44-e53deebcf65c_wgs_gdc_realn.bam 83131595971 BAM hg38 8ff31d83-efad-4f1c-becc-9139d5cd9ad6 storage1 -C3L-02970.WXS.N C3L-02970 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8410df92-98cf-44d2-a8ca-8fa3225e6a52/CPT0219880002.WholeExome.RP-1303.bam 21081532319 BAM hg19 8410df92-98cf-44d2-a8ca-8fa3225e6a52 storage1 -C3L-02970.WXS.T C3L-02970 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57745292-4b18-458c-88ca-e6d042997f29/CPT0217880006.WholeExome.RP-1303.bam 23397201110 BAM hg19 57745292-4b18-458c-88ca-e6d042997f29 storage1 C3L-02984.RNA-Seq.chimeric.T.hg38 C3L-02984 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84e4abbd-d3d2-4827-a3e6-ec9a3ab12ed4/65609314-dde5-44f7-a431-67a46b213605.rna_seq.chimeric.gdc_realn.bam 178252565 BAM hg38 84e4abbd-d3d2-4827-a3e6-ec9a3ab12ed4 storage1 C3L-02984.RNA-Seq.R1.T C3L-02984 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76f376b0-2060-4210-91a5-7a9c455f5a06/181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 2810736021 FASTQ NA 76f376b0-2060-4210-91a5-7a9c455f5a06 storage1 C3L-02984.RNA-Seq.R2.T C3L-02984 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11d1d3d7-9d95-4062-8f5f-87972e664b99/181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 2953074405 FASTQ NA 11d1d3d7-9d95-4062-8f5f-87972e664b99 storage1 C3L-02984.RNA-Seq.transcriptome.T.hg38 C3L-02984 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4aff9f8a-1024-43ea-bbae-1493b01deb8b/65609314-dde5-44f7-a431-67a46b213605.rna_seq.transcriptome.gdc_realn.bam 4792713051 BAM hg38 4aff9f8a-1024-43ea-bbae-1493b01deb8b storage1 -C3L-02984.WGS.N C3L-02984 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b9254f-e641-45c7-8f6d-2efc182f471f/CPT0191140002.WholeGenome.RP-1303.bam 54115104663 BAM hg19 65b9254f-e641-45c7-8f6d-2efc182f471f storage1 C3L-02984.WGS.N.hg38 C3L-02984 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5818d333-beab-43be-82c1-0dd0d4b9dc2b/e5ddf63e-02bd-4bdc-b9ce-a6a7f6a7f918_wgs_gdc_realn.bam 79654917121 BAM hg38 5818d333-beab-43be-82c1-0dd0d4b9dc2b storage1 -C3L-02984.WGS.T C3L-02984 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29dfa34a-203b-4e91-ae2a-1a3cdd03a0a1/CPT0190240007.WholeGenome.RP-1303.bam 54669566821 BAM hg19 29dfa34a-203b-4e91-ae2a-1a3cdd03a0a1 storage1 C3L-02984.WGS.T.hg38 C3L-02984 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/298fcf17-cd78-4194-8336-640ea15e3758/37514624-b499-4178-817a-435023a8082b_wgs_gdc_realn.bam 80406133029 BAM hg38 298fcf17-cd78-4194-8336-640ea15e3758 storage1 -C3L-02984.WXS.N C3L-02984 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2971dcce-672a-42e0-a04d-b7f9ec9449aa/CPT0191140002.WholeExome.RP-1303.bam 23964872836 BAM hg19 2971dcce-672a-42e0-a04d-b7f9ec9449aa storage1 -C3L-02984.WXS.T C3L-02984 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cc19be6-36bb-4cc7-9327-0a93f8ee8369/CPT0190240007.WholeExome.RP-1303.bam 25077428993 BAM hg19 9cc19be6-36bb-4cc7-9327-0a93f8ee8369 storage1 C3L-02990.RNA-Seq.R1.T C3L-02990 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33933da7-f679-46b2-9cb5-c536aeb6055b/190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 4088077320 FASTQ NA 33933da7-f679-46b2-9cb5-c536aeb6055b storage1 C3L-02990.RNA-Seq.R1.T C3L-02990 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bce9e6d3-d5d8-4c66-9e6b-c2878e51ac9e/20210729_P3_A11_WB7988-Plate3_S11_R1_001.fastq.gz 11919349405 FASTQ NA bce9e6d3-d5d8-4c66-9e6b-c2878e51ac9e storage1 C3L-02990.RNA-Seq.R2.T C3L-02990 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44c9ddbe-7efd-4020-8dd3-ee0c609c99dd/20210729_P3_A11_WB7988-Plate3_S11_R2_001.fastq.gz 12243951613 FASTQ NA 44c9ddbe-7efd-4020-8dd3-ee0c609c99dd storage1 @@ -3835,12 +3688,8 @@ C3L-03260.RNA-Seq.chimeric.T.hg38 C3L-03260 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03260.RNA-Seq.R1.T C3L-03260 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5abdb618-d893-4beb-b3cd-274c0b41fe38/181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R1_001.fastq.gz 3783047594 FASTQ NA 5abdb618-d893-4beb-b3cd-274c0b41fe38 storage1 C3L-03260.RNA-Seq.R2.T C3L-03260 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2ed3a7a-ad2e-4277-87a1-35487339dcaa/181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R2_001.fastq.gz 4064400209 FASTQ NA f2ed3a7a-ad2e-4277-87a1-35487339dcaa storage1 C3L-03260.RNA-Seq.transcriptome.T.hg38 C3L-03260 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57c51431-8ed6-4eed-83db-54dded8be839/057d49be-0d96-4a77-863d-ddf44cc46ae8.rna_seq.transcriptome.gdc_realn.bam 8366817677 BAM hg38 57c51431-8ed6-4eed-83db-54dded8be839 storage1 -C3L-03260.WGS.N C3L-03260 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cbb8c3a-9a3b-4859-abab-b66a92d587d7/CPT0190200002.WholeGenome.RP-1303.bam 58748641881 BAM hg19 6cbb8c3a-9a3b-4859-abab-b66a92d587d7 storage1 C3L-03260.WGS.N.hg38 C3L-03260 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e38e44be-6fcf-4507-9438-e015dcd8aed1/6a194913-6f77-46e2-8eb6-19fe1ff78405_wgs_gdc_realn.bam 84625597942 BAM hg38 e38e44be-6fcf-4507-9438-e015dcd8aed1 storage1 -C3L-03260.WGS.T C3L-03260 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61f46131-6963-4c81-8a89-dd9952629e53/CPT0189250006.WholeGenome.RP-1303.bam 70357795761 BAM hg19 61f46131-6963-4c81-8a89-dd9952629e53 storage1 C3L-03260.WGS.T.hg38 C3L-03260 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/63a9920c-6299-4fd3-adc6-82d67426d4ff/a3156b22-4743-4eb4-9d13-0d5be60ef996_wgs_gdc_realn.bam 104119641036 BAM hg38 63a9920c-6299-4fd3-adc6-82d67426d4ff storage1 -C3L-03260.WXS.N C3L-03260 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37bbad93-8750-4669-93b2-1336ec00d890/CPT0190200002.WholeExome.RP-1303.bam 28833002601 BAM hg19 37bbad93-8750-4669-93b2-1336ec00d890 storage1 -C3L-03260.WXS.T C3L-03260 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb0180f7-3827-4044-b73a-7572616e1dac/CPT0189250006.WholeExome.RP-1303.bam 30927408831 BAM hg19 eb0180f7-3827-4044-b73a-7572616e1dac storage1 C3L-03262.RNA-Seq.R1.A C3L-03262 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a08b93b-d972-417f-9eb4-1bb0938b540a/190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3840371385 FASTQ NA 5a08b93b-d972-417f-9eb4-1bb0938b540a storage1 C3L-03262.RNA-Seq.R1.T C3L-03262 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c370f76-baed-452e-af24-0b557400ea8b/190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R1_001.fastq.gz 3070816096 FASTQ NA 3c370f76-baed-452e-af24-0b557400ea8b storage1 C3L-03262.RNA-Seq.R2.A C3L-03262 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db3a60ba-b8b9-4c8b-a49e-234c1640f018/190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4273435058 FASTQ NA db3a60ba-b8b9-4c8b-a49e-234c1640f018 storage1 @@ -3857,12 +3706,8 @@ C3L-03266.RNA-Seq.chimeric.T.hg38 C3L-03266 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03266.RNA-Seq.R1.T C3L-03266 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f21763d0-27de-4280-9b52-0ed9b74804de/181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3455029772 FASTQ NA f21763d0-27de-4280-9b52-0ed9b74804de storage1 C3L-03266.RNA-Seq.R2.T C3L-03266 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe6554ca-64ab-4ad1-a3de-c87835c34fc0/181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3674883650 FASTQ NA fe6554ca-64ab-4ad1-a3de-c87835c34fc0 storage1 C3L-03266.RNA-Seq.transcriptome.T.hg38 C3L-03266 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1227d9bc-703a-4b9a-8d2a-c7d79b583852/2e0c7789-b8ff-4a1f-a360-a77fb1ef0468.rna_seq.transcriptome.gdc_realn.bam 7723639490 BAM hg38 1227d9bc-703a-4b9a-8d2a-c7d79b583852 storage1 -C3L-03266.WGS.N C3L-03266 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/016ad426-e103-4ec3-8a81-b6eab664922e/CPT0190220002.WholeGenome.RP-1303.bam 60060309110 BAM hg19 016ad426-e103-4ec3-8a81-b6eab664922e storage1 C3L-03266.WGS.N.hg38 C3L-03266 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f29969cc-8a9e-417b-b2fd-440773b088f9/8c46cc2e-aa9c-432b-9955-cfc461c71921_wgs_gdc_realn.bam 87485615811 BAM hg38 f29969cc-8a9e-417b-b2fd-440773b088f9 storage1 -C3L-03266.WGS.T C3L-03266 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddabb765-cc52-4dec-989d-93d4075268b2/CPT0189460006.WholeGenome.RP-1303.bam 54351022135 BAM hg19 ddabb765-cc52-4dec-989d-93d4075268b2 storage1 C3L-03266.WGS.T.hg38 C3L-03266 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6f0c65f-b2ac-4875-a94a-46eb3494da28/93e3b8f0-4da0-4bf0-92f6-e1ce3cf9cd2e_wgs_gdc_realn.bam 80672086264 BAM hg38 f6f0c65f-b2ac-4875-a94a-46eb3494da28 storage1 -C3L-03266.WXS.N C3L-03266 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f179cedb-cf5d-40a8-a4a5-a9fe1396241d/CPT0190220002.WholeExome.RP-1303.bam 20829629921 BAM hg19 f179cedb-cf5d-40a8-a4a5-a9fe1396241d storage1 -C3L-03266.WXS.T C3L-03266 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f8a2ced-a32e-4280-ad8b-01a16c529149/CPT0189460006.WholeExome.RP-1303.bam 19587221339 BAM hg19 8f8a2ced-a32e-4280-ad8b-01a16c529149 storage1 C3L-03268.RNA-Seq.R1.A C3L-03268 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d49d2b1-e748-45eb-a127-3462adc294de/190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R1_001.fastq.gz 3624790822 FASTQ NA 3d49d2b1-e748-45eb-a127-3462adc294de storage1 C3L-03268.RNA-Seq.R1.T C3L-03268 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/322fd04f-febc-43d3-bbb8-ddaf962a08d6/190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R1_001.fastq.gz 4220987078 FASTQ NA 322fd04f-febc-43d3-bbb8-ddaf962a08d6 storage1 C3L-03268.RNA-Seq.R2.A C3L-03268 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3763de5-eccb-463a-9975-dc31fcd7b991/190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R2_001.fastq.gz 4059327152 FASTQ NA f3763de5-eccb-463a-9975-dc31fcd7b991 storage1 @@ -3919,13 +3764,9 @@ C3L-03372.RNA-Seq.R1.T C3L-03372 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-03372.RNA-Seq.R1.T C3L-03372 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8109363c-1835-4a99-92e2-e83b25a6b90f/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R1_001.fastq.gz 3400877684 FASTQ NA 8109363c-1835-4a99-92e2-e83b25a6b90f storage1 C3L-03372.RNA-Seq.R2.T C3L-03372 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/650b80e4-de52-493d-98b9-8ba98fbf901b/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ NA 650b80e4-de52-493d-98b9-8ba98fbf901b storage1 C3L-03372.RNA-Seq.R2.T C3L-03372 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/650b80e4-de52-493d-98b9-8ba98fbf901b/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ NA 650b80e4-de52-493d-98b9-8ba98fbf901b storage1 -C3L-03372.WGS.N C3L-03372 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31a89f6d-8060-4ffa-b67c-ee7de92e385b/CPT0265940002.WholeGenome.RP-2158.bam 30822237663 BAM hg19 31a89f6d-8060-4ffa-b67c-ee7de92e385b storage1 C3L-03372.WGS.N.hg38 C3L-03372 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e93293ef-83a7-4e72-8e5d-632a9ae6fb51/69294b54-61df-4d78-a0da-7e5f1420368c_wgs_gdc_realn.bam 90435302917 BAM hg38 e93293ef-83a7-4e72-8e5d-632a9ae6fb51 storage1 -C3L-03372.WGS.T C3L-03372 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3768276d-ccd5-42ab-a4ed-ef40990aa5b0/CPT0275960006.WholeGenome.RP-2158.bam 21511353026 BAM hg19 3768276d-ccd5-42ab-a4ed-ef40990aa5b0 storage1 C3L-03372.WGS.T.hg38 C3L-03372 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fe1828b-c264-4376-b62e-0625433cb229/0f606cd0-59c7-4da4-be52-58226d2b3cd5_wgs_gdc_realn.bam 62585754770 BAM hg38 4fe1828b-c264-4376-b62e-0625433cb229 storage1 -C3L-03372.WXS.N C3L-03372 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a23c514-da2a-4366-bd23-dd31907fbc9f/CPT0265940002.WholeExome.RP-1303.bam 21429808831 BAM hg19 5a23c514-da2a-4366-bd23-dd31907fbc9f storage1 C3L-03372.WXS.N.hg38 C3L-03372 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/232df735-b856-4f31-840a-0e28d746748a/69294b54-61df-4d78-a0da-7e5f1420368c_wxs_gdc_realn.bam 29617153769 BAM hg38 232df735-b856-4f31-840a-0e28d746748a storage1 -C3L-03372.WXS.T C3L-03372 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ffb97bc-1694-49bb-aa91-9bdccd83d539/CPT0275960006.WholeExome.RP-1303.bam 20594156903 BAM hg19 7ffb97bc-1694-49bb-aa91-9bdccd83d539 storage1 C3L-03372.WXS.T.hg38 C3L-03372 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0dd34017-3bea-4078-bfb6-359d08615f12/0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM hg38 0dd34017-3bea-4078-bfb6-359d08615f12 storage1 C3L-03378.RNA-Seq.R1.A C3L-03378 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77b18098-8d38-4e5e-8131-07fb0109099f/190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 3654791322 FASTQ NA 77b18098-8d38-4e5e-8131-07fb0109099f storage1 C3L-03378.RNA-Seq.R1.T C3L-03378 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e149408-a843-40d0-9aa8-9ecd461a1e30/20210723_P2_H1_WB7988-plate2_S85_R1_001.fastq.gz 6737442394 FASTQ NA 2e149408-a843-40d0-9aa8-9ecd461a1e30 storage1 @@ -3939,24 +3780,16 @@ C3L-03385.RNA-Seq.R1.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-03385.RNA-Seq.R1.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ NA fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 storage1 C3L-03385.RNA-Seq.R2.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bad51e82-edda-4dae-9ae2-a378a2c50866/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ NA bad51e82-edda-4dae-9ae2-a378a2c50866 storage1 C3L-03385.RNA-Seq.R2.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bad51e82-edda-4dae-9ae2-a378a2c50866/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ NA bad51e82-edda-4dae-9ae2-a378a2c50866 storage1 -C3L-03385.WGS.N C3L-03385 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/347cc10e-8a2e-464b-95a8-46c9bf006c10/CPT0240540002.WholeGenome.RP-2158.bam 24847212386 BAM hg19 347cc10e-8a2e-464b-95a8-46c9bf006c10 storage1 C3L-03385.WGS.N.hg38 C3L-03385 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ddf2838-9c6e-46f8-a6fe-7df5a229e159/f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wgs_gdc_realn.bam 70348014229 BAM hg38 9ddf2838-9c6e-46f8-a6fe-7df5a229e159 storage1 -C3L-03385.WGS.T C3L-03385 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e239e5f5-1111-4506-9c6f-45dde5665e7a/CPT0239860006.WholeGenome.RP-2158.bam 23002457535 BAM hg19 e239e5f5-1111-4506-9c6f-45dde5665e7a storage1 C3L-03385.WGS.T.hg38 C3L-03385 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1247c8ff-9ca8-448b-9a6b-fcf0385dde94/d623559b-eaeb-4754-ad9a-9884f01c60a7_wgs_gdc_realn.bam 68019906430 BAM hg38 1247c8ff-9ca8-448b-9a6b-fcf0385dde94 storage1 -C3L-03385.WXS.N C3L-03385 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a89fc2e-3585-46d6-8832-3ac8e1b618ef/CPT0240540002.WholeExome.RP-1303.bam 23859008288 BAM hg19 7a89fc2e-3585-46d6-8832-3ac8e1b618ef storage1 C3L-03385.WXS.N.hg38 C3L-03385 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5b5aae5-cc1e-4644-87d0-d21324604e2a/f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wxs_gdc_realn.bam 33622502874 BAM hg38 c5b5aae5-cc1e-4644-87d0-d21324604e2a storage1 -C3L-03385.WXS.T C3L-03385 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2240b4a0-874d-40e3-b446-d018f18f318d/CPT0239860006.WholeExome.RP-1303.bam 18539111036 BAM hg19 2240b4a0-874d-40e3-b446-d018f18f318d storage1 C3L-03385.WXS.T.hg38 C3L-03385 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/faa8ff85-2285-4533-9a3c-3e04b16f0a2e/d623559b-eaeb-4754-ad9a-9884f01c60a7_wxs_gdc_realn.bam 26146677855 BAM hg38 faa8ff85-2285-4533-9a3c-3e04b16f0a2e storage1 C3L-03387.RNA-Seq.chimeric.T.hg38 C3L-03387 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d7e9088-3ed5-474a-ae49-27d2e0103e65/ba588a83-d39f-43c3-bd8a-0688aa076825.rna_seq.chimeric.gdc_realn.bam 43471080 BAM hg38 1d7e9088-3ed5-474a-ae49-27d2e0103e65 storage1 C3L-03387.RNA-Seq.R1.T C3L-03387 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/441a47fe-4c5f-4806-953e-859958409898/190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R1_001.fastq.gz 4290080477 FASTQ NA 441a47fe-4c5f-4806-953e-859958409898 storage1 C3L-03387.RNA-Seq.R2.T C3L-03387 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/843aca93-5c65-4532-8c3e-4281ae000aff/190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R2_001.fastq.gz 4709248929 FASTQ NA 843aca93-5c65-4532-8c3e-4281ae000aff storage1 C3L-03387.RNA-Seq.transcriptome.T.hg38 C3L-03387 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b2526ea-8a7c-419a-b83d-59f9e46a1411/ba588a83-d39f-43c3-bd8a-0688aa076825.rna_seq.transcriptome.gdc_realn.bam 8816080949 BAM hg38 1b2526ea-8a7c-419a-b83d-59f9e46a1411 storage1 -C3L-03387.WGS.N C3L-03387 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4addfa6-16cd-4ed4-abfc-20ada9fd1470/CPT0226180002.WholeGenome.RP-1303.bam 50305187419 BAM hg19 a4addfa6-16cd-4ed4-abfc-20ada9fd1470 storage1 C3L-03387.WGS.N.hg38 C3L-03387 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765/4a22b011-e87f-4787-95a6-344797bb400c_wgs_gdc_realn.bam 72900382309 BAM hg38 9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765 storage1 -C3L-03387.WGS.T C3L-03387 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0b229ff-afac-4d69-9603-86693aa65dd5/CPT0224330009.WholeGenome.RP-1303.bam 78260181663 BAM hg19 f0b229ff-afac-4d69-9603-86693aa65dd5 storage1 C3L-03387.WGS.T.hg38 C3L-03387 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ceb11e0-157a-4cdb-8392-db452c4e04b6/8899e630-70e4-4c89-865a-ccb799e2fe2e_wgs_gdc_realn.bam 114493276339 BAM hg38 8ceb11e0-157a-4cdb-8392-db452c4e04b6 storage1 -C3L-03387.WXS.N C3L-03387 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5776e90a-cfe5-4884-81a3-b441678f1a68/CPT0226180002.WholeExome.RP-1303.bam 20960602102 BAM hg19 5776e90a-cfe5-4884-81a3-b441678f1a68 storage1 -C3L-03387.WXS.T C3L-03387 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9323f4e3-8e20-4c3d-9497-1bd5e752a65b/CPT0224330009.WholeExome.RP-1303.bam 22898239054 BAM hg19 9323f4e3-8e20-4c3d-9497-1bd5e752a65b storage1 C3L-03388.RNA-Seq.genomic.T.hg38 C3L-03388 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/296907e7-a60d-4668-b7ec-13a264939445/2abe9248-23a3-40e8-9d57-de266eaf6b65.rna_seq.genomic.gdc_realn.bam 7971957323 BAM hg38 296907e7-a60d-4668-b7ec-13a264939445 storage1 C3L-03388.RNA-Seq.R1.T C3L-03388 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1924850-236c-4907-9300-b2171ab11e5d/190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R1_001.fastq.gz 3579047573 FASTQ NA a1924850-236c-4907-9300-b2171ab11e5d storage1 C3L-03388.RNA-Seq.R2.T C3L-03388 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64d5bbe7-888e-4aba-bf57-85cc0d91d9bd/190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R2_001.fastq.gz 4044364470 FASTQ NA 64d5bbe7-888e-4aba-bf57-85cc0d91d9bd storage1 @@ -3966,22 +3799,14 @@ C3L-03390.RNA-Seq.chimeric.T.hg38 C3L-03390 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03390.RNA-Seq.R1.T C3L-03390 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14b78975-bb11-45e4-bf3a-6231ae15c533/190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R1_001.fastq.gz 4863781844 FASTQ NA 14b78975-bb11-45e4-bf3a-6231ae15c533 storage1 C3L-03390.RNA-Seq.R2.T C3L-03390 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f30d4502-0e7e-4f11-9f7d-0c329004b5a0/190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R2_001.fastq.gz 5588208336 FASTQ NA f30d4502-0e7e-4f11-9f7d-0c329004b5a0 storage1 C3L-03390.RNA-Seq.transcriptome.T.hg38 C3L-03390 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5578a05c-2b5d-4780-bc4d-f55f6461ea98/1f778bb2-89f1-43e3-85ec-bc412a76a1ab.rna_seq.transcriptome.gdc_realn.bam 10579748810 BAM hg38 5578a05c-2b5d-4780-bc4d-f55f6461ea98 storage1 -C3L-03390.WGS.N C3L-03390 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7880621-0431-45f0-a58a-746bdbdeb8b1/CPT0226190002.WholeGenome.RP-1303.bam 56285195181 BAM hg19 e7880621-0431-45f0-a58a-746bdbdeb8b1 storage1 C3L-03390.WGS.N.hg38 C3L-03390 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9ce8457-208f-4107-99f2-3497084cfb8c/d9097320-6595-429e-8660-e663f114d0ee_wgs_gdc_realn.bam 83351438529 BAM hg38 a9ce8457-208f-4107-99f2-3497084cfb8c storage1 -C3L-03390.WGS.T C3L-03390 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1fc03b5-8c96-4381-a6aa-3fe89a894f9d/CPT0224390011.WholeGenome.RP-1303.bam 78665301242 BAM hg19 f1fc03b5-8c96-4381-a6aa-3fe89a894f9d storage1 C3L-03390.WGS.T.hg38 C3L-03390 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d3e0c03-13dd-4a5e-971a-b3b3c731ac1f/90326737-c1a1-4276-aebc-450fe0e46dfa_wgs_gdc_realn.bam 115355123029 BAM hg38 8d3e0c03-13dd-4a5e-971a-b3b3c731ac1f storage1 -C3L-03390.WXS.N C3L-03390 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fe56c94-0283-4d67-81e4-e016c56c72bf/CPT0226190002.WholeExome.RP-1303.bam 37906602852 BAM hg19 1fe56c94-0283-4d67-81e4-e016c56c72bf storage1 -C3L-03390.WXS.T C3L-03390 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3beaf56a-a3c2-4fe7-9796-709d2bc26178/CPT0224390011.WholeExome.RP-1303.bam 28518710275 BAM hg19 3beaf56a-a3c2-4fe7-9796-709d2bc26178 storage1 C3L-03392.RNA-Seq.chimeric.T.hg38 C3L-03392 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81c0d221-7b9b-44e3-b040-50ad56c1b7fb/a235bb49-63bf-43da-a325-2b0bf23529dc.rna_seq.chimeric.gdc_realn.bam 32300803 BAM hg38 81c0d221-7b9b-44e3-b040-50ad56c1b7fb storage1 C3L-03392.RNA-Seq.R1.T C3L-03392 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dd441ec-fb27-41f5-80b9-816dbeab8275/180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R1_001.fastq.gz 3680900354 FASTQ NA 6dd441ec-fb27-41f5-80b9-816dbeab8275 storage1 C3L-03392.RNA-Seq.R2.T C3L-03392 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1335ed53-57d6-463c-82aa-af700b3b1553/180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R2_001.fastq.gz 3910349127 FASTQ NA 1335ed53-57d6-463c-82aa-af700b3b1553 storage1 C3L-03392.RNA-Seq.transcriptome.T.hg38 C3L-03392 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/261e8ef0-b493-4433-96ec-57b14a6f515a/a235bb49-63bf-43da-a325-2b0bf23529dc.rna_seq.transcriptome.gdc_realn.bam 10017463239 BAM hg38 261e8ef0-b493-4433-96ec-57b14a6f515a storage1 -C3L-03392.WGS.N C3L-03392 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31374716-6c9e-44bd-9cf7-26b9b6759f2e/CPT0220450002.WholeGenome.RP-1303.bam 63771051310 BAM hg19 31374716-6c9e-44bd-9cf7-26b9b6759f2e storage1 C3L-03392.WGS.N.hg38 C3L-03392 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/015f04c9-ea83-461e-b589-16d23a1373f5/5d4b78a2-4914-4360-afee-3b4972851627_wgs_gdc_realn.bam 91133707316 BAM hg38 015f04c9-ea83-461e-b589-16d23a1373f5 storage1 -C3L-03392.WGS.T C3L-03392 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f548d6aa-d69d-479d-95b8-8af58e310b5a/CPT0219080007.WholeGenome.RP-1303.bam 59830116648 BAM hg19 f548d6aa-d69d-479d-95b8-8af58e310b5a storage1 C3L-03392.WGS.T.hg38 C3L-03392 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00dabba2-edbc-4787-ab50-7d8d7aa7a959/cf4c95bb-37e5-424b-b1bc-e4de8f4a81cd_wgs_gdc_realn.bam 86338605963 BAM hg38 00dabba2-edbc-4787-ab50-7d8d7aa7a959 storage1 -C3L-03392.WXS.N C3L-03392 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e193928f-e27d-429d-817e-c6b43f96f87d/CPT0220450002.WholeExome.RP-1303.bam 22863749107 BAM hg19 e193928f-e27d-429d-817e-c6b43f96f87d storage1 -C3L-03392.WXS.T C3L-03392 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1032b46-3610-4409-9aa7-6519a2781c67/CPT0219080007.WholeExome.RP-1303.bam 25067481514 BAM hg19 f1032b46-3610-4409-9aa7-6519a2781c67 storage1 C3L-03394.RNA-Seq.genomic.T.hg38 C3L-03394 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40e9b175-a77e-4fd3-92b6-4bbfc626b387/a8b1647b-678d-4205-a897-542e9499dbcc.rna_seq.genomic.gdc_realn.bam 11917773461 BAM hg38 40e9b175-a77e-4fd3-92b6-4bbfc626b387 storage1 C3L-03394.RNA-Seq.R1.T C3L-03394 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3888b98-9e02-4ba8-a9c3-9f0997c579fe/190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R1_001.fastq.gz 4407192011 FASTQ NA e3888b98-9e02-4ba8-a9c3-9f0997c579fe storage1 C3L-03394.RNA-Seq.R2.T C3L-03394 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e23e4e4c-16a8-4696-acd6-4b60cda0de5f/190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R2_001.fastq.gz 4500709300 FASTQ NA e23e4e4c-16a8-4696-acd6-4b60cda0de5f storage1 @@ -3996,32 +3821,20 @@ C3L-03400.RNA-Seq.chimeric.T.hg38 C3L-03400 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03400.RNA-Seq.R1.T C3L-03400 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70531ebf-08c9-4f56-aa0a-52c009c298f4/190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R1_001.fastq.gz 3706034638 FASTQ NA 70531ebf-08c9-4f56-aa0a-52c009c298f4 storage1 C3L-03400.RNA-Seq.R2.T C3L-03400 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/642ffec8-e51b-42da-a88f-a3db6ad879e2/190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R2_001.fastq.gz 4240652850 FASTQ NA 642ffec8-e51b-42da-a88f-a3db6ad879e2 storage1 C3L-03400.RNA-Seq.transcriptome.T.hg38 C3L-03400 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e81eadb5-5722-4615-ab14-397a93732a0d/6a2d78b2-951e-4cf8-9b83-2651f2ff9929.rna_seq.transcriptome.gdc_realn.bam 9049224504 BAM hg38 e81eadb5-5722-4615-ab14-397a93732a0d storage1 -C3L-03400.WGS.N C3L-03400 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04360ecd-5fed-445e-9c1c-0964f8355df9/CPT0226220002.WholeGenome.RP-1303.bam 67662788509 BAM hg19 04360ecd-5fed-445e-9c1c-0964f8355df9 storage1 C3L-03400.WGS.N.hg38 C3L-03400 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27ef4fff-c92d-461f-aaf5-ab3f31c0a342/8fe75c1a-636f-4248-b8d3-63ece1e9c2fb_wgs_gdc_realn.bam 98876232389 BAM hg38 27ef4fff-c92d-461f-aaf5-ab3f31c0a342 storage1 -C3L-03400.WGS.T C3L-03400 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9af3bff-a099-4bf8-b76f-8481a157bc55/CPT0224540010.WholeGenome.RP-1303.bam 56562722769 BAM hg19 e9af3bff-a099-4bf8-b76f-8481a157bc55 storage1 C3L-03400.WGS.T.hg38 C3L-03400 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84dde002-3ddb-47de-a3c0-9b10942e48e2/6e089e91-8946-4c41-9a59-c97549e0435c_wgs_gdc_realn.bam 81513667612 BAM hg38 84dde002-3ddb-47de-a3c0-9b10942e48e2 storage1 -C3L-03400.WXS.N C3L-03400 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1502bd8-87a5-4a24-86ea-78dc52e4e8b7/CPT0226220002.WholeExome.RP-1303.bam 35425436835 BAM hg19 a1502bd8-87a5-4a24-86ea-78dc52e4e8b7 storage1 -C3L-03400.WXS.T C3L-03400 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac4dc844-e6d2-4338-8ab9-f665c7fcc403/CPT0224540010.WholeExome.RP-1303.bam 29226244296 BAM hg19 ac4dc844-e6d2-4338-8ab9-f665c7fcc403 storage1 C3L-03405.RNA-Seq.chimeric.T.hg38 C3L-03405 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0dfa2358-cb0a-4001-abe3-77fee2168339/76dee45a-6193-4811-b224-6b3bb37db946.rna_seq.chimeric.gdc_realn.bam 40836751 BAM hg38 0dfa2358-cb0a-4001-abe3-77fee2168339 storage1 C3L-03405.RNA-Seq.R1.T C3L-03405 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cac0fc4-002c-49e6-b009-08e3a79f147a/190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R1_001.fastq.gz 4225515484 FASTQ NA 9cac0fc4-002c-49e6-b009-08e3a79f147a storage1 C3L-03405.RNA-Seq.R2.T C3L-03405 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e72bfb7-d0de-4f03-821d-673d90b9eb8c/190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R2_001.fastq.gz 4668539169 FASTQ NA 6e72bfb7-d0de-4f03-821d-673d90b9eb8c storage1 C3L-03405.RNA-Seq.transcriptome.T.hg38 C3L-03405 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95880be3-d923-482d-8c42-291c4d1d4767/76dee45a-6193-4811-b224-6b3bb37db946.rna_seq.transcriptome.gdc_realn.bam 8439677841 BAM hg38 95880be3-d923-482d-8c42-291c4d1d4767 storage1 -C3L-03405.WGS.N C3L-03405 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24756334-9a9c-4858-a1cd-7ee5372a812e/CPT0226240002.WholeGenome.RP-1303.bam 68922224835 BAM hg19 24756334-9a9c-4858-a1cd-7ee5372a812e storage1 C3L-03405.WGS.N.hg38 C3L-03405 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b380a40e-9f97-46f5-b417-ab8df4fbacb5/403a82f6-1996-4dc4-807e-60dfeb23d36c_wgs_gdc_realn.bam 100015884430 BAM hg38 b380a40e-9f97-46f5-b417-ab8df4fbacb5 storage1 -C3L-03405.WGS.T C3L-03405 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0eeb8b2a-70bb-472c-a048-fdeda1bdaf3a/CPT0224600009.WholeGenome.RP-1303.bam 64505884561 BAM hg19 0eeb8b2a-70bb-472c-a048-fdeda1bdaf3a storage1 C3L-03405.WGS.T.hg38 C3L-03405 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ff96dc5-e933-4c93-a2f2-878cc1920047/91d5eca6-731f-4bf2-9e06-c0985c9a7d05_wgs_gdc_realn.bam 93470200145 BAM hg38 7ff96dc5-e933-4c93-a2f2-878cc1920047 storage1 -C3L-03405.WXS.N C3L-03405 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abaa12a2-462c-4114-bfdf-7eac1046fc08/CPT0226240002.WholeExome.RP-1303.bam 24907172659 BAM hg19 abaa12a2-462c-4114-bfdf-7eac1046fc08 storage1 -C3L-03405.WXS.T C3L-03405 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/891c04b6-c846-4e3a-b218-b27846610713/CPT0224600009.WholeExome.RP-1303.bam 21839114465 BAM hg19 891c04b6-c846-4e3a-b218-b27846610713 storage1 C3L-03407.RNA-Seq.chimeric.T.hg38 C3L-03407 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c32e7316-0700-43ed-8180-b90c2422ff4c/0963c60e-64c0-4423-8483-25a35620f59e.rna_seq.chimeric.gdc_realn.bam 237015727 BAM hg38 c32e7316-0700-43ed-8180-b90c2422ff4c storage1 C3L-03407.RNA-Seq.R1.T C3L-03407 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8078474f-74ce-4a21-a1c6-28c2f33c7b82/190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R1_001.fastq.gz 3311998605 FASTQ NA 8078474f-74ce-4a21-a1c6-28c2f33c7b82 storage1 C3L-03407.RNA-Seq.R2.T C3L-03407 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00ca5043-9ebf-4436-a321-bb9576d0723c/190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R2_001.fastq.gz 3485263834 FASTQ NA 00ca5043-9ebf-4436-a321-bb9576d0723c storage1 C3L-03407.RNA-Seq.transcriptome.T.hg38 C3L-03407 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e220d1c-3c00-4163-a8a0-f79ccba93968/0963c60e-64c0-4423-8483-25a35620f59e.rna_seq.transcriptome.gdc_realn.bam 8244589292 BAM hg38 3e220d1c-3c00-4163-a8a0-f79ccba93968 storage1 -C3L-03407.WGS.N C3L-03407 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/975f974b-9217-4ab9-b951-3ceb455d88bc/CPT0191160002.WholeGenome.RP-1303.bam 64750280441 BAM hg19 975f974b-9217-4ab9-b951-3ceb455d88bc storage1 C3L-03407.WGS.N.hg38 C3L-03407 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fda424ce-c105-499d-b8c1-f90fee8971ac/4f757bbc-1252-4331-aad8-a2a73e7fd008_wgs_gdc_realn.bam 92980568150 BAM hg38 fda424ce-c105-499d-b8c1-f90fee8971ac storage1 -C3L-03407.WGS.T C3L-03407 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7617d968-d289-458b-b1e6-52e8f8312d92/CPT0190360007.WholeGenome.RP-1303.bam 74377876565 BAM hg19 7617d968-d289-458b-b1e6-52e8f8312d92 storage1 C3L-03407.WGS.T.hg38 C3L-03407 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c12fdcd8-7fc6-44ea-b03c-772bf07d85b8/03da8212-cc53-424c-9b84-3669bd1e1d25_wgs_gdc_realn.bam 112888620419 BAM hg38 c12fdcd8-7fc6-44ea-b03c-772bf07d85b8 storage1 -C3L-03407.WXS.N C3L-03407 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdba9014-198b-42e5-87d4-a9dbab9b64f4/CPT0191160002.WholeExome.RP-1303.bam 23952138429 BAM hg19 bdba9014-198b-42e5-87d4-a9dbab9b64f4 storage1 -C3L-03407.WXS.T C3L-03407 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb2ca344-1b8c-4932-b446-351a68535363/CPT0190360007.WholeExome.RP-1303.bam 21798160503 BAM hg19 eb2ca344-1b8c-4932-b446-351a68535363 storage1 C3L-03462.RNA-Seq.R1.A C3L-03462 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08f42aaf-e92e-4cdb-8cad-cf7ba704a416/190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R1_001.fastq.gz 5609424626 FASTQ NA 08f42aaf-e92e-4cdb-8cad-cf7ba704a416 storage1 C3L-03462.RNA-Seq.R1.T C3L-03462 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea36bf78-e9fe-46b3-90a2-9d279423087b/190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R1_001.fastq.gz 4816010569 FASTQ NA ea36bf78-e9fe-46b3-90a2-9d279423087b storage1 C3L-03462.RNA-Seq.R2.A C3L-03462 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a7e6797e-a229-4708-9d39-2b9a48c52c94/190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R2_001.fastq.gz 6122059962 FASTQ NA a7e6797e-a229-4708-9d39-2b9a48c52c94 storage1 @@ -4155,12 +3968,8 @@ C3L-03681.RNA-Seq.chimeric.T.hg38 C3L-03681 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03681.RNA-Seq.R1.T C3L-03681 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2962ecc7-2fe8-4e9e-89d3-b617340d0432/180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R1_001.fastq.gz 4328253999 FASTQ NA 2962ecc7-2fe8-4e9e-89d3-b617340d0432 storage1 C3L-03681.RNA-Seq.R2.T C3L-03681 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9bb1f2aa-64c9-4c92-b826-ee22bb21f2a0/180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R2_001.fastq.gz 4631403009 FASTQ NA 9bb1f2aa-64c9-4c92-b826-ee22bb21f2a0 storage1 C3L-03681.RNA-Seq.transcriptome.T.hg38 C3L-03681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85fca1a1-64ea-4bd0-ac70-96abea0f9d14/b13b944c-cbb8-4400-8e6c-4ebdeac56021.rna_seq.transcriptome.gdc_realn.bam 10575951377 BAM hg38 85fca1a1-64ea-4bd0-ac70-96abea0f9d14 storage1 -C3L-03681.WGS.N C3L-03681 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08f9bd71-2fa5-41b2-88c2-5014a14fb0f9/CPT0220510002.WholeGenome.RP-1303.bam 60596705995 BAM hg19 08f9bd71-2fa5-41b2-88c2-5014a14fb0f9 storage1 C3L-03681.WGS.N.hg38 C3L-03681 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f3b8669-1552-4554-8f61-7471a0ba9abc/62fc896c-d0c5-4885-b546-4b024f96b1e7_wgs_gdc_realn.bam 87428465300 BAM hg38 7f3b8669-1552-4554-8f61-7471a0ba9abc storage1 -C3L-03681.WGS.T C3L-03681 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8d69033-1a00-4e38-ab8f-7fd5a316ed57/CPT0221180005.WholeGenome.RP-1303.bam 66863164893 BAM hg19 d8d69033-1a00-4e38-ab8f-7fd5a316ed57 storage1 C3L-03681.WGS.T.hg38 C3L-03681 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad4153c7-62a9-4e3a-8ed1-e381392867b3/d262fa4d-cd40-4d6d-962b-0a484e6e124f_wgs_gdc_realn.bam 95992233101 BAM hg38 ad4153c7-62a9-4e3a-8ed1-e381392867b3 storage1 -C3L-03681.WXS.N C3L-03681 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a78890a-81a5-46e2-a006-29e43a5ed46e/CPT0220510002.WholeExome.RP-1303.bam 26983951722 BAM hg19 7a78890a-81a5-46e2-a006-29e43a5ed46e storage1 -C3L-03681.WXS.T C3L-03681 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c80218c-45da-4287-98e1-6fca91cff83c/CPT0221180005.WholeExome.RP-1303.bam 21830967650 BAM hg19 5c80218c-45da-4287-98e1-6fca91cff83c storage1 C3L-03717.RNA-Seq.R1.A C3L-03717 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65e9b9a7-b693-46c7-8ba1-3f71ca129fb5/190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R1_001.fastq.gz 4011200395 FASTQ NA 65e9b9a7-b693-46c7-8ba1-3f71ca129fb5 storage1 C3L-03717.RNA-Seq.R1.T C3L-03717 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b09d3d82-e1d8-41d5-8a0d-803946d44c18/190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R1_001.fastq.gz 4558899664 FASTQ NA b09d3d82-e1d8-41d5-8a0d-803946d44c18 storage1 C3L-03717.RNA-Seq.R2.A C3L-03717 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b1346f1-9e3f-4f66-b4fc-5febd7a88009/190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R2_001.fastq.gz 4121879476 FASTQ NA 5b1346f1-9e3f-4f66-b4fc-5febd7a88009 storage1 @@ -4183,55 +3992,35 @@ C3L-03727.RNA-Seq.chimeric.T.hg38 C3L-03727 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03727.RNA-Seq.R1.T C3L-03727 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b526132b-252b-4f64-a2ca-38cc2054e315/190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R1_001.fastq.gz 4340578448 FASTQ NA b526132b-252b-4f64-a2ca-38cc2054e315 storage1 C3L-03727.RNA-Seq.R2.T C3L-03727 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f9a8462-d332-440b-829b-cb89534d53ac/190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ NA 7f9a8462-d332-440b-829b-cb89534d53ac storage1 C3L-03727.RNA-Seq.transcriptome.T.hg38 C3L-03727 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b265a4da-40c2-4cd1-a523-1269a3a72366/0a4a687c-44de-4a5e-b416-ce00741b3bf3.rna_seq.transcriptome.gdc_realn.bam 9622624187 BAM hg38 b265a4da-40c2-4cd1-a523-1269a3a72366 storage1 -C3L-03727.WGS.N C3L-03727 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dabeaec9-1bd1-438c-96d8-4563576a1313/CPT0226070002.WholeGenome.RP-1303.bam 57874549766 BAM hg19 dabeaec9-1bd1-438c-96d8-4563576a1313 storage1 C3L-03727.WGS.N.hg38 C3L-03727 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7247fffc-8e61-4aaf-9730-d778464a2102/c9645e62-b3e4-4624-90e1-dfb6cec6a2e1_wgs_gdc_realn.bam 83183578779 BAM hg38 7247fffc-8e61-4aaf-9730-d778464a2102 storage1 -C3L-03727.WGS.T C3L-03727 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68e0af99-c50e-4e2a-a646-41cbbd818126/CPT0225730006.WholeGenome.RP-1303.bam 60652599834 BAM hg19 68e0af99-c50e-4e2a-a646-41cbbd818126 storage1 C3L-03727.WGS.T.hg38 C3L-03727 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc8a6281-297a-47a7-a5a5-9ac5562091f8/af5e5eeb-1d07-479b-902c-a8c807108148_wgs_gdc_realn.bam 88839794751 BAM hg38 fc8a6281-297a-47a7-a5a5-9ac5562091f8 storage1 -C3L-03727.WXS.N C3L-03727 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ced2166a-2169-4cce-8d33-65767036ca35/CPT0226070002.WholeExome.RP-1303.bam 25440364596 BAM hg19 ced2166a-2169-4cce-8d33-65767036ca35 storage1 -C3L-03727.WXS.T C3L-03727 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/914ba8fe-bd54-4251-8ae5-6cfbc2dcfe39/CPT0225730006.WholeExome.RP-1303.bam 21777053944 BAM hg19 914ba8fe-bd54-4251-8ae5-6cfbc2dcfe39 storage1 C3L-03728.RNA-Seq.chimeric.T.hg38 C3L-03728 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f28d00d-7640-46b0-a5a7-a6c4dd99cdc8/31e6d792-d209-48dd-97c7-4271d8533d12.rna_seq.chimeric.gdc_realn.bam 95702337 BAM hg38 6f28d00d-7640-46b0-a5a7-a6c4dd99cdc8 storage1 C3L-03728.RNA-Seq.R1.T C3L-03728 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4baf937-60b5-42f9-a33e-1209aa16242b/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ NA b4baf937-60b5-42f9-a33e-1209aa16242b storage1 C3L-03728.RNA-Seq.R2.T C3L-03728 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c99ba97-600a-4b1f-8896-eaa03fcb0372/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ NA 1c99ba97-600a-4b1f-8896-eaa03fcb0372 storage1 C3L-03728.RNA-Seq.transcriptome.T.hg38 C3L-03728 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5bdfa5e-f71f-4eff-af2a-8ada1205e557/31e6d792-d209-48dd-97c7-4271d8533d12.rna_seq.transcriptome.gdc_realn.bam 8683090174 BAM hg38 e5bdfa5e-f71f-4eff-af2a-8ada1205e557 storage1 -C3L-03728.WGS.N C3L-03728 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2307c4bb-6f8e-4223-96dd-2506f0c1bc72/CPT0226080002.WholeGenome.RP-1303.bam 57921937659 BAM hg19 2307c4bb-6f8e-4223-96dd-2506f0c1bc72 storage1 C3L-03728.WGS.N.hg38 C3L-03728 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a08af25b-9aed-42e8-9bb2-e32873fe5874/97ec897b-c7b9-4ccb-8bd0-caa209d71254_wgs_gdc_realn.bam 83720461591 BAM hg38 a08af25b-9aed-42e8-9bb2-e32873fe5874 storage1 -C3L-03728.WGS.T C3L-03728 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42bac2f7-191c-45f7-aa29-ca3375844664/CPT0225760006.WholeGenome.RP-1303.bam 56031768687 BAM hg19 42bac2f7-191c-45f7-aa29-ca3375844664 storage1 C3L-03728.WGS.T.hg38 C3L-03728 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85e6d6ce-fd69-4897-a631-d7ba1c5affd6/269ffccf-de74-4303-8d2f-0b737598d9f9_wgs_gdc_realn.bam 80472595369 BAM hg38 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 storage1 -C3L-03728.WXS.N C3L-03728 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65fc79b0-c28c-4652-8d28-155eb23f10e6/CPT0226080002.WholeExome.RP-1303.bam 27682972484 BAM hg19 65fc79b0-c28c-4652-8d28-155eb23f10e6 storage1 -C3L-03728.WXS.T C3L-03728 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2addcd8-750b-4cca-a7dc-2d575e954e2d/CPT0225760006.WholeExome.RP-1303.bam 26317526083 BAM hg19 c2addcd8-750b-4cca-a7dc-2d575e954e2d storage1 C3L-03733.RNA-Seq.R1.T C3L-03733 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c8b80a-f15c-47ad-927e-96483a71a4ac/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ NA d3c8b80a-f15c-47ad-927e-96483a71a4ac storage1 C3L-03733.RNA-Seq.R2.T C3L-03733 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d68a3a3f-d8d9-488f-b581-3eb6bf3c545f/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ NA d68a3a3f-d8d9-488f-b581-3eb6bf3c545f storage1 -C3L-03733.WGS.N C3L-03733 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd628747-fd76-4da6-97cb-6e20282d4b6a/CPT0388900002.WholeGenome.RP-2158.bam 25383296813 BAM hg19 cd628747-fd76-4da6-97cb-6e20282d4b6a storage1 C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b5cd4a1-6a8d-4d03-a714-0d819779e047/b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 73835643752 BAM hg38 4b5cd4a1-6a8d-4d03-a714-0d819779e047 storage1 -C3L-03733.WGS.T C3L-03733 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/085c2ec3-e073-4e33-b105-b7a31acfd571/CPT0388870006.WholeGenome.RP-2158.bam 21210221177 BAM hg19 085c2ec3-e073-4e33-b105-b7a31acfd571 storage1 C3L-03733.WGS.T.hg38 C3L-03733 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3670c996-27b9-48ba-ba81-9f8129b1d722/bfb2401e-4a92-4242-92bb-d01ecb08d14d_wgs_gdc_realn.bam 61788693098 BAM hg38 3670c996-27b9-48ba-ba81-9f8129b1d722 storage1 -C3L-03733.WXS.N C3L-03733 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/899e62b6-5d45-429c-b1a8-1de6e24057c5/CPT0388900002.WholeExome.RP-1303.bam 25281066656 BAM hg19 899e62b6-5d45-429c-b1a8-1de6e24057c5 storage1 C3L-03733.WXS.N.hg38 C3L-03733 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25d1bdb6-0d99-4a7d-92b6-85eef9854759/b5c33706-5e86-42f3-9fd2-ab09c7614d05_wxs_gdc_realn.bam 35376963378 BAM hg38 25d1bdb6-0d99-4a7d-92b6-85eef9854759 storage1 -C3L-03733.WXS.T C3L-03733 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f09db89-5fb9-43ab-9858-a6958bfff22b/CPT0388870006.WholeExome.RP-1303.bam 26953591550 BAM hg19 9f09db89-5fb9-43ab-9858-a6958bfff22b storage1 C3L-03733.WXS.T.hg38 C3L-03733 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33ac154f-1767-4f9b-8075-a12172189894/bfb2401e-4a92-4242-92bb-d01ecb08d14d_wxs_gdc_realn.bam 36743064043 BAM hg38 33ac154f-1767-4f9b-8075-a12172189894 storage1 C3L-03735.RNA-Seq.R1.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ NA fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 storage1 C3L-03735.RNA-Seq.R1.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ NA fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 storage1 C3L-03735.RNA-Seq.R2.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0552d99d-65f1-45ec-8a79-41d6de621a90/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ NA 0552d99d-65f1-45ec-8a79-41d6de621a90 storage1 C3L-03735.RNA-Seq.R2.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0552d99d-65f1-45ec-8a79-41d6de621a90/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ NA 0552d99d-65f1-45ec-8a79-41d6de621a90 storage1 -C3L-03735.WGS.N C3L-03735 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/15654810-dd84-4d60-b564-a09430083c09/CPT0265770002.WholeGenome.RP-2158.bam 30302599855 BAM hg19 15654810-dd84-4d60-b564-a09430083c09 storage1 C3L-03735.WGS.N.hg38 C3L-03735 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12fe818c-9d4e-47ea-b5d5-b697846bbecb/e7d56953-30f9-417c-9e40-1462762bea4f_wgs_gdc_realn.bam 90921510968 BAM hg38 12fe818c-9d4e-47ea-b5d5-b697846bbecb storage1 -C3L-03735.WGS.T C3L-03735 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/528458ab-ac6e-401f-8f36-1d58b1412a89/CPT0264120006.WholeGenome.RP-2158.bam 25957361172 BAM hg19 528458ab-ac6e-401f-8f36-1d58b1412a89 storage1 C3L-03735.WGS.T.hg38 C3L-03735 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2273e09f-c959-4216-b55b-8f39dd971741/8cf70493-a5d8-4a66-af1d-89028cb10621_wgs_gdc_realn.bam 74067454129 BAM hg38 2273e09f-c959-4216-b55b-8f39dd971741 storage1 -C3L-03735.WXS.N C3L-03735 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dc827d0-5da2-424f-be7e-b5d6b07b51b1/CPT0265770002.WholeExome.RP-1303.bam 24103085523 BAM hg19 1dc827d0-5da2-424f-be7e-b5d6b07b51b1 storage1 C3L-03735.WXS.N.hg38 C3L-03735 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3e2c432-ec42-4d5c-848b-f53a31f5b494/e7d56953-30f9-417c-9e40-1462762bea4f_wxs_gdc_realn.bam 33186095115 BAM hg38 e3e2c432-ec42-4d5c-848b-f53a31f5b494 storage1 -C3L-03735.WXS.T C3L-03735 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a452dd6-c235-40bc-91b7-9102ecf5bd95/CPT0264120006.WholeExome.RP-1303.bam 24321593437 BAM hg19 1a452dd6-c235-40bc-91b7-9102ecf5bd95 storage1 C3L-03735.WXS.T.hg38 C3L-03735 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b74b0bb2-b174-4779-9e16-0933e2fdbc02/8cf70493-a5d8-4a66-af1d-89028cb10621_wxs_gdc_realn.bam 34460901803 BAM hg38 b74b0bb2-b174-4779-9e16-0933e2fdbc02 storage1 C3L-03740.RNA-Seq.R1.T C3L-03740 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/545a4b63-a08b-42bf-93f8-6b9faa29e42d/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ NA 545a4b63-a08b-42bf-93f8-6b9faa29e42d storage1 C3L-03740.RNA-Seq.R1.T C3L-03740 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/545a4b63-a08b-42bf-93f8-6b9faa29e42d/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ NA 545a4b63-a08b-42bf-93f8-6b9faa29e42d storage1 C3L-03740.RNA-Seq.R2.T C3L-03740 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04802ae4-6a8a-400d-87e5-2822568997c5/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ NA 04802ae4-6a8a-400d-87e5-2822568997c5 storage1 C3L-03740.RNA-Seq.R2.T C3L-03740 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04802ae4-6a8a-400d-87e5-2822568997c5/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ NA 04802ae4-6a8a-400d-87e5-2822568997c5 storage1 -C3L-03740.WGS.N C3L-03740 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c47ab067-c1c5-42b1-9e33-e4dc928e1a81/CPT0250420002.WholeGenome.RP-2158.bam 21405427914 BAM hg19 c47ab067-c1c5-42b1-9e33-e4dc928e1a81 storage1 C3L-03740.WGS.N.hg38 C3L-03740 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75913059-161e-4163-8bcd-7682c8b705bd/6983e835-2ae6-468a-adac-ec0464461c65_wgs_gdc_realn.bam 64109908623 BAM hg38 75913059-161e-4163-8bcd-7682c8b705bd storage1 -C3L-03740.WGS.T C3L-03740 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2143c8e9-b69d-4741-be28-b2d942baae88/CPT0249420006.WholeGenome.RP-2158.bam 29989797887 BAM hg19 2143c8e9-b69d-4741-be28-b2d942baae88 storage1 C3L-03740.WGS.T.hg38 C3L-03740 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1408af83-c51f-4a85-9ea5-0890c2678fce/5f411427-6a95-49fe-be0c-950f30692337_wgs_gdc_realn.bam 87814571471 BAM hg38 1408af83-c51f-4a85-9ea5-0890c2678fce storage1 -C3L-03740.WXS.N C3L-03740 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74cd737d-4e4e-48a0-83b1-824bb3b13135/CPT0250420002.WholeExome.RP-1303.bam 22690999931 BAM hg19 74cd737d-4e4e-48a0-83b1-824bb3b13135 storage1 C3L-03740.WXS.N.hg38 C3L-03740 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3bbcc78-a7c4-4c55-99f3-829d3d394087/6983e835-2ae6-468a-adac-ec0464461c65_wxs_gdc_realn.bam 31150698203 BAM hg38 b3bbcc78-a7c4-4c55-99f3-829d3d394087 storage1 -C3L-03740.WXS.T C3L-03740 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fe3a81b-3274-4ef3-86a8-7957912a7c87/CPT0249420006.WholeExome.RP-1303.bam 19873227788 BAM hg19 4fe3a81b-3274-4ef3-86a8-7957912a7c87 storage1 C3L-03740.WXS.T.hg38 C3L-03740 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51b302f1-783a-421a-8abb-b6fbc2d8aa0f/5f411427-6a95-49fe-be0c-950f30692337_wxs_gdc_realn.bam 27684153748 BAM hg38 51b302f1-783a-421a-8abb-b6fbc2d8aa0f storage1 C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1da42751-ac08-44d3-be4a-079c3cad256d/2917532a-84e2-478f-8002-2cdc0933731a.rna_seq.genomic.gdc_realn.bam 7946127775 BAM hg38 1da42751-ac08-44d3-be4a-079c3cad256d storage1 C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a76c9ea-2bc2-4934-93c5-317308f8fbf6/a6c74427-1eb0-4d26-ae53-0ba9a33e9734.rna_seq.genomic.gdc_realn.bam 8947757265 BAM hg38 9a76c9ea-2bc2-4934-93c5-317308f8fbf6 storage1 @@ -4245,12 +4034,8 @@ C3L-03744.RNA-Seq.chimeric.T.hg38 C3L-03744 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03744.RNA-Seq.R1.T C3L-03744 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/035f8110-bb22-4229-9d3b-0dd4da238606/190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4858139330 FASTQ NA 035f8110-bb22-4229-9d3b-0dd4da238606 storage1 C3L-03744.RNA-Seq.R2.T C3L-03744 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42993232-1d7f-4def-9b3a-811428825733/190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 5409623564 FASTQ NA 42993232-1d7f-4def-9b3a-811428825733 storage1 C3L-03744.RNA-Seq.transcriptome.T.hg38 C3L-03744 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf25c460-eff3-4441-a637-ab9c4c4fecab/2923f52c-a269-4e4b-ba3c-1b005eee2066.rna_seq.transcriptome.gdc_realn.bam 10095010838 BAM hg38 cf25c460-eff3-4441-a637-ab9c4c4fecab storage1 -C3L-03744.WGS.N C3L-03744 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14d128b3-9403-40f4-870a-38bcad05e52d/CPT0217940002.WholeGenome.RP-1303.bam 52411466113 BAM hg19 14d128b3-9403-40f4-870a-38bcad05e52d storage1 C3L-03744.WGS.N.hg38 C3L-03744 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28786672-2983-417e-9c3f-32b2a8e7e114/3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wgs_gdc_realn.bam 76421878020 BAM hg38 28786672-2983-417e-9c3f-32b2a8e7e114 storage1 -C3L-03744.WGS.T C3L-03744 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e602e2df-7f77-4fa9-8c60-ece16deea396/CPT0216920011.WholeGenome.RP-1303.bam 67876448704 BAM hg19 e602e2df-7f77-4fa9-8c60-ece16deea396 storage1 C3L-03744.WGS.T.hg38 C3L-03744 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/603495d3-0a81-4668-a1c8-74a5bbbe8c6b/b291d9bd-e99f-427c-a1d9-730d69d55a57_wgs_gdc_realn.bam 101148486261 BAM hg38 603495d3-0a81-4668-a1c8-74a5bbbe8c6b storage1 -C3L-03744.WXS.N C3L-03744 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2b4c5ad-f6f0-4027-b378-8e4115e9b6a9/CPT0217940002.WholeExome.RP-1303.bam 22729890191 BAM hg19 b2b4c5ad-f6f0-4027-b378-8e4115e9b6a9 storage1 -C3L-03744.WXS.T C3L-03744 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/227d0648-896b-4b18-82e7-1f38ba950fd9/CPT0216920011.WholeExome.RP-1303.bam 26906470146 BAM hg19 227d0648-896b-4b18-82e7-1f38ba950fd9 storage1 C3L-03747.RNA-Seq.R1.T C3L-03747 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a901792d-b393-486f-bc02-850fb27a7f25/180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R1_001.fastq.gz 3582139637 FASTQ NA a901792d-b393-486f-bc02-850fb27a7f25 storage1 C3L-03747.RNA-Seq.R2.T C3L-03747 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/883fce4d-a898-4223-9001-b7d58f416fbc/180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R2_001.fastq.gz 3910029087 FASTQ NA 883fce4d-a898-4223-9001-b7d58f416fbc storage1 C3L-03747.WGS.N.hg38 C3L-03747 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f060af66-6986-4c8b-be4f-29950061dabb/388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wgs_gdc_realn.bam 84283984691 BAM hg38 f060af66-6986-4c8b-be4f-29950061dabb storage1 @@ -4259,12 +4044,8 @@ C3L-03748.RNA-Seq.chimeric.T.hg38 C3L-03748 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03748.RNA-Seq.R1.T C3L-03748 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f45eae70-fb91-4be8-b800-b75f57fad8c5/180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R1_001.fastq.gz 3796424609 FASTQ NA f45eae70-fb91-4be8-b800-b75f57fad8c5 storage1 C3L-03748.RNA-Seq.R2.T C3L-03748 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d3fcaa-2a96-4d16-b3c8-7c95b195ea82/180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R2_001.fastq.gz 3969682675 FASTQ NA 02d3fcaa-2a96-4d16-b3c8-7c95b195ea82 storage1 C3L-03748.RNA-Seq.transcriptome.T.hg38 C3L-03748 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e76c7c0-bdc5-44a7-9f0d-ceccb9eb7a7c/f9eb1a8f-7812-44d5-a19d-22350c1f5145.rna_seq.transcriptome.gdc_realn.bam 10310258777 BAM hg38 6e76c7c0-bdc5-44a7-9f0d-ceccb9eb7a7c storage1 -C3L-03748.WGS.N C3L-03748 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/970c43de-36e6-416f-ba5d-86278b80511c/CPT0218000002.WholeGenome.RP-1303.bam 57762347417 BAM hg19 970c43de-36e6-416f-ba5d-86278b80511c storage1 C3L-03748.WGS.N.hg38 C3L-03748 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad507579-6e47-4698-aa55-5d47304df7dd/cedd1569-11a3-49f4-a54c-36f18c88e15b_wgs_gdc_realn.bam 83504601495 BAM hg38 ad507579-6e47-4698-aa55-5d47304df7dd storage1 -C3L-03748.WGS.T C3L-03748 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8645169e-b3b8-4fa6-9df6-e6297edaa00e/CPT0217060006.WholeGenome.RP-1303.bam 54717459819 BAM hg19 8645169e-b3b8-4fa6-9df6-e6297edaa00e storage1 C3L-03748.WGS.T.hg38 C3L-03748 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/330758b2-97f5-4111-a2b1-b80145713d3c/9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wgs_gdc_realn.bam 79848899956 BAM hg38 330758b2-97f5-4111-a2b1-b80145713d3c storage1 -C3L-03748.WXS.N C3L-03748 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b30d60d8-a7fd-4c86-b014-89ecbea963bb/CPT0218000002.WholeExome.RP-1303.bam 29923040072 BAM hg19 b30d60d8-a7fd-4c86-b014-89ecbea963bb storage1 -C3L-03748.WXS.T C3L-03748 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b61146b2-df6a-446f-90c6-88c5bcf452a2/CPT0217060006.WholeExome.RP-1303.bam 21251285282 BAM hg19 b61146b2-df6a-446f-90c6-88c5bcf452a2 storage1 C3L-03961.RNA-Seq.R1.A C3L-03961 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f05b42a3-d863-44c6-977b-2b06cd34fc19/190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 4461119091 FASTQ NA f05b42a3-d863-44c6-977b-2b06cd34fc19 storage1 C3L-03961.RNA-Seq.R1.T.deprecated C3L-03961 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fb41a04-a113-43f8-bf41-3ebfeaa16b15/190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R1_001.fastq.gz 4028566384 FASTQ NA 0fb41a04-a113-43f8-bf41-3ebfeaa16b15 storage1 C3L-03961.RNA-Seq.R1.T.RRNA_rk5RkXK C3L-03961 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba4d2ef4-56f6-4f5b-a4b8-994751624d3d/190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R1_001.fastq.gz 3927636537 FASTQ NA ba4d2ef4-56f6-4f5b-a4b8-994751624d3d storage1 @@ -4295,12 +4076,8 @@ C3L-03968.RNA-Seq.chimeric.T.hg38 C3L-03968 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03968.RNA-Seq.R1.T C3L-03968 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6017d4a-a185-48b3-be09-6924aebbd163/190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R1_001.fastq.gz 4636196096 FASTQ NA b6017d4a-a185-48b3-be09-6924aebbd163 storage1 C3L-03968.RNA-Seq.R2.T C3L-03968 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/caa46304-d90c-4d2f-b172-b917ea44d003/190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R2_001.fastq.gz 4944644409 FASTQ NA caa46304-d90c-4d2f-b172-b917ea44d003 storage1 C3L-03968.RNA-Seq.transcriptome.T.hg38 C3L-03968 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2965b6ed-aa86-4091-85c4-5f4451d15b3e/b9da1e14-7929-46ba-8e1d-c25682ba7df5.rna_seq.transcriptome.gdc_realn.bam 8363388866 BAM hg38 2965b6ed-aa86-4091-85c4-5f4451d15b3e storage1 -C3L-03968.WGS.N C3L-03968 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9efb45b1-b5e0-48b5-86cb-660f2dafa2e8/CPT0228320002.WholeGenome.RP-1303.bam 51775732268 BAM hg19 9efb45b1-b5e0-48b5-86cb-660f2dafa2e8 storage1 C3L-03968.WGS.N.hg38 C3L-03968 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b49821e-bb58-4201-ae96-cb252e209018/8b735522-06d1-4074-adb7-0f326c2842b4_wgs_gdc_realn.bam 75690377017 BAM hg38 1b49821e-bb58-4201-ae96-cb252e209018 storage1 -C3L-03968.WGS.T C3L-03968 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8caecb2c-3677-4732-9297-62c2e37d5ff3/CPT0228220006.WholeGenome.RP-1303.bam 61251194504 BAM hg19 8caecb2c-3677-4732-9297-62c2e37d5ff3 storage1 C3L-03968.WGS.T.hg38 C3L-03968 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/150b83ed-69d5-4474-b11c-d3def690a707/9616e8d2-5da6-4585-877b-be3056794e29_wgs_gdc_realn.bam 88956331568 BAM hg38 150b83ed-69d5-4474-b11c-d3def690a707 storage1 -C3L-03968.WXS.N C3L-03968 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ace4bb1f-f3a7-4ad4-a78b-ee6336a220ff/CPT0228320002.WholeExome.RP-1303.bam 25548039141 BAM hg19 ace4bb1f-f3a7-4ad4-a78b-ee6336a220ff storage1 -C3L-03968.WXS.T C3L-03968 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/117ba2db-8177-4f3a-9f0f-1512fbcf3ac5/CPT0228220006.WholeExome.RP-1303.bam 27157559453 BAM hg19 117ba2db-8177-4f3a-9f0f-1512fbcf3ac5 storage1 C3L-03969.RNA-Seq.R1.A C3L-03969 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a354b39-5529-48f4-96a9-4d98d5bd3158/190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R1_001.fastq.gz 3773757903 FASTQ NA 8a354b39-5529-48f4-96a9-4d98d5bd3158 storage1 C3L-03969.RNA-Seq.R1.T C3L-03969 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43507f31-8ecf-4b74-b825-91d2d500e1c8/190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R1_001.fastq.gz 3781375419 FASTQ NA 43507f31-8ecf-4b74-b825-91d2d500e1c8 storage1 C3L-03969.RNA-Seq.R2.A C3L-03969 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0592d378-f99e-40d6-814e-0d8a72167e96/190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R2_001.fastq.gz 4112110859 FASTQ NA 0592d378-f99e-40d6-814e-0d8a72167e96 storage1 @@ -4379,13 +4156,9 @@ C3L-04036.RNA-Seq.R1.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04036.RNA-Seq.R1.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ad5e390-ef2e-4370-a0fa-de8d0c112f8b/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ NA 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b storage1 C3L-04036.RNA-Seq.R2.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/180a4380-addf-4a1a-98bd-e75a7b5982da/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ NA 180a4380-addf-4a1a-98bd-e75a7b5982da storage1 C3L-04036.RNA-Seq.R2.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/180a4380-addf-4a1a-98bd-e75a7b5982da/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ NA 180a4380-addf-4a1a-98bd-e75a7b5982da storage1 -C3L-04036.WGS.N C3L-04036 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4614d7be-dcff-4e9a-b51a-2a14ca2a0707/CPT0228200002.WholeGenome.RP-2158.bam 27954573868 BAM hg19 4614d7be-dcff-4e9a-b51a-2a14ca2a0707 storage1 C3L-04036.WGS.N.hg38 C3L-04036 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cc05bff-59ba-46d5-a94b-f2ce494057d0/d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wgs_gdc_realn.bam 84600612482 BAM hg38 5cc05bff-59ba-46d5-a94b-f2ce494057d0 storage1 -C3L-04036.WGS.T C3L-04036 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea0a6535-4d05-4a3f-b835-1431971ebd4d/CPT0228100006.WholeGenome.RP-2158.bam 26788664741 BAM hg19 ea0a6535-4d05-4a3f-b835-1431971ebd4d storage1 C3L-04036.WGS.T.hg38 C3L-04036 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38dbe442-1dc6-4904-a03f-2d4d7fd6a845/cf7c8668-776a-401c-8507-aeb41e890b44_wgs_gdc_realn.bam 78770530553 BAM hg38 38dbe442-1dc6-4904-a03f-2d4d7fd6a845 storage1 -C3L-04036.WXS.N C3L-04036 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ceb21f60-93ac-4f7e-a303-770b73fbc591/CPT0228200002.WholeExome.RP-1303.bam 24314988168 BAM hg19 ceb21f60-93ac-4f7e-a303-770b73fbc591 storage1 C3L-04036.WXS.N.hg38 C3L-04036 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af95917f-66d4-4f45-a029-744682ad5cfd/d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wxs_gdc_realn.bam 32993694360 BAM hg38 af95917f-66d4-4f45-a029-744682ad5cfd storage1 -C3L-04036.WXS.T C3L-04036 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e451386b-5d46-4f36-ab71-9e929e867659/CPT0228100006.WholeExome.RP-1303.bam 22411527930 BAM hg19 e451386b-5d46-4f36-ab71-9e929e867659 storage1 C3L-04036.WXS.T.hg38 C3L-04036 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/494a854e-4132-41ed-a5a9-4ccdeda2fb59/cf7c8668-776a-401c-8507-aeb41e890b44_wxs_gdc_realn.bam 31650565850 BAM hg38 494a854e-4132-41ed-a5a9-4ccdeda2fb59 storage1 C3L-04037.RNA-Seq.R1.A C3L-04037 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4b5d44d-2940-459d-9c29-ed2e26f03a5f/190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R1_001.fastq.gz 3456382054 FASTQ NA f4b5d44d-2940-459d-9c29-ed2e26f03a5f storage1 C3L-04037.RNA-Seq.R1.T C3L-04037 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20ce4060-9f88-4c4a-8cd6-1686f5924208/190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R1_001.fastq.gz 4443614863 FASTQ NA 20ce4060-9f88-4c4a-8cd6-1686f5924208 storage1 @@ -4397,13 +4170,9 @@ C3L-04038.RNA-Seq.R1.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04038.RNA-Seq.R1.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b1047c2-0ebd-425a-bbb5-558034d20ee0/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ NA 4b1047c2-0ebd-425a-bbb5-558034d20ee0 storage1 C3L-04038.RNA-Seq.R2.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/432fbf58-dc9c-45c4-aad4-ccb291b8c512/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ NA 432fbf58-dc9c-45c4-aad4-ccb291b8c512 storage1 C3L-04038.RNA-Seq.R2.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/432fbf58-dc9c-45c4-aad4-ccb291b8c512/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ NA 432fbf58-dc9c-45c4-aad4-ccb291b8c512 storage1 -C3L-04038.WGS.N C3L-04038 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e05914be-d79b-4d2a-943d-e2ffa3f8f761/CPT0256820002.WholeGenome.RP-2158.bam 25899155371 BAM hg19 e05914be-d79b-4d2a-943d-e2ffa3f8f761 storage1 C3L-04038.WGS.N.hg38 C3L-04038 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21d14944-67f4-4d0c-bfd5-ab7986f4c4c5/e5fa0684-79a6-4278-a7cf-29880b9ce537_wgs_gdc_realn.bam 78286150186 BAM hg38 21d14944-67f4-4d0c-bfd5-ab7986f4c4c5 storage1 -C3L-04038.WGS.T C3L-04038 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80ca3087-4bf6-4b8c-8f8e-58e43b23a65a/CPT0256720007.WholeGenome.RP-2158.bam 28044770829 BAM hg19 80ca3087-4bf6-4b8c-8f8e-58e43b23a65a storage1 C3L-04038.WGS.T.hg38 C3L-04038 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b5bfea2-570b-4285-85db-df3e57f7fbf6/17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wgs_gdc_realn.bam 82873631851 BAM hg38 9b5bfea2-570b-4285-85db-df3e57f7fbf6 storage1 -C3L-04038.WXS.N C3L-04038 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d431b988-27da-45a1-b85a-7e412e19f42a/CPT0256820002.WholeExome.RP-1303.bam 26276419705 BAM hg19 d431b988-27da-45a1-b85a-7e412e19f42a storage1 C3L-04038.WXS.N.hg38 C3L-04038 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d68ef551-045b-4c28-991c-54176b2ef8b2/e5fa0684-79a6-4278-a7cf-29880b9ce537_wxs_gdc_realn.bam 36239960295 BAM hg38 d68ef551-045b-4c28-991c-54176b2ef8b2 storage1 -C3L-04038.WXS.T C3L-04038 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/249c70cd-cfd6-49b5-9c77-33b54ab3004e/CPT0256720007.WholeExome.RP-1303.bam 20717451239 BAM hg19 249c70cd-cfd6-49b5-9c77-33b54ab3004e storage1 C3L-04038.WXS.T.hg38 C3L-04038 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/593cbb4d-9753-427f-9bca-da27067a715b/17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wxs_gdc_realn.bam 29805069310 BAM hg38 593cbb4d-9753-427f-9bca-da27067a715b storage1 C3L-04040.RNA-Seq.R1.T C3L-04040 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff/190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R1_001.fastq.gz 4182858994 FASTQ NA 03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff storage1 C3L-04040.RNA-Seq.R2.T C3L-04040 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a047da7-59a1-41f5-9ec1-728f230c506b/190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R2_001.fastq.gz 4821163674 FASTQ NA 5a047da7-59a1-41f5-9ec1-728f230c506b storage1 @@ -4447,55 +4216,35 @@ C3L-04081.WXS.N C3L-04081 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Acti C3L-04081.WXS.T C3L-04081 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b3b6248-df80-4767-9b6a-3d11bd2cc5b4/CPT0265510008.WholeExome.RP-1303.bam 27007068396 BAM hg19 2b3b6248-df80-4767-9b6a-3d11bd2cc5b4 storage1 C3L-04082.RNA-Seq.R1.T C3L-04082 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec4c1755-cc9a-44e5-a27e-f2dfb20759aa/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R1_001.fastq.gz 4248024679 FASTQ NA ec4c1755-cc9a-44e5-a27e-f2dfb20759aa storage1 C3L-04082.RNA-Seq.R2.T C3L-04082 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f246b0c-555f-40f6-8164-cb5299028ec0/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ NA 5f246b0c-555f-40f6-8164-cb5299028ec0 storage1 -C3L-04082.WGS.N C3L-04082 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f9d4fab-3a95-41ba-8cb8-70de60482272/CPT0264080002.WholeGenome.RP-2158.bam 23128977215 BAM hg19 1f9d4fab-3a95-41ba-8cb8-70de60482272 storage1 C3L-04082.WGS.N.hg38 C3L-04082 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59832d48-68b8-4628-8d69-7508a94d58a8/bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 67786654929 BAM hg38 59832d48-68b8-4628-8d69-7508a94d58a8 storage1 -C3L-04082.WGS.T C3L-04082 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a83e225-07c0-4a15-a08f-b287f7e00006/CPT0265570007.WholeGenome.RP-2158.bam 30408005969 BAM hg19 1a83e225-07c0-4a15-a08f-b287f7e00006 storage1 C3L-04082.WGS.T.hg38 C3L-04082 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80a90602-d5bb-4aa3-bcbf-2911f481b8f3/55106539-3a36-4192-9e5c-0e548beee398_wgs_gdc_realn.bam 88159863449 BAM hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 storage1 -C3L-04082.WXS.N C3L-04082 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3da9c6d0-81b1-4747-ab34-b6204f43eea0/CPT0264080002.WholeExome.RP-1303.bam 24080895568 BAM hg19 3da9c6d0-81b1-4747-ab34-b6204f43eea0 storage1 C3L-04082.WXS.N.hg38 C3L-04082 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d9f84bd-a6e9-4678-99b9-b92e116bd990/bb8cccdb-ed81-4577-985c-bb7a2fa25615_wxs_gdc_realn.bam 33980020985 BAM hg38 5d9f84bd-a6e9-4678-99b9-b92e116bd990 storage1 -C3L-04082.WXS.T C3L-04082 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/defd4a05-6b63-4c8e-9b64-de81577bc0f0/CPT0265570007.WholeExome.RP-1303.bam 18573057471 BAM hg19 defd4a05-6b63-4c8e-9b64-de81577bc0f0 storage1 C3L-04082.WXS.T.hg38 C3L-04082 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f87237fb-ad70-43ed-af55-79837baed1a4/55106539-3a36-4192-9e5c-0e548beee398_wxs_gdc_realn.bam 26661775311 BAM hg38 f87237fb-ad70-43ed-af55-79837baed1a4 storage1 C3L-04083.RNA-Seq.R1.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5549791b-5875-433f-a85e-980a44bb3310/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ NA 5549791b-5875-433f-a85e-980a44bb3310 storage1 C3L-04083.RNA-Seq.R1.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5549791b-5875-433f-a85e-980a44bb3310/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ NA 5549791b-5875-433f-a85e-980a44bb3310 storage1 C3L-04083.RNA-Seq.R2.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21ee205d-ff01-4791-82f7-e4b0f801a099/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ NA 21ee205d-ff01-4791-82f7-e4b0f801a099 storage1 C3L-04083.RNA-Seq.R2.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21ee205d-ff01-4791-82f7-e4b0f801a099/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ NA 21ee205d-ff01-4791-82f7-e4b0f801a099 storage1 -C3L-04083.WGS.N C3L-04083 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9c2a88b-947b-4b4e-94b1-6b877ae9b7c6/CPT0243420002.WholeGenome.RP-2158.bam 25713668352 BAM hg19 a9c2a88b-947b-4b4e-94b1-6b877ae9b7c6 storage1 C3L-04083.WGS.N.hg38 C3L-04083 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f0a473f-e05f-4b30-988f-a4456e458e19/d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wgs_gdc_realn.bam 76815969296 BAM hg38 8f0a473f-e05f-4b30-988f-a4456e458e19 storage1 -C3L-04083.WGS.T C3L-04083 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/058118a9-ec62-4f35-9758-e4701373868f/CPT0242430007.WholeGenome.RP-2158.bam 24095585977 BAM hg19 058118a9-ec62-4f35-9758-e4701373868f storage1 C3L-04083.WGS.T.hg38 C3L-04083 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a76bbc4e-73d6-452c-8993-b8b3c830587b/c66bf4aa-16ce-43f4-a353-8244577bf31a_wgs_gdc_realn.bam 71762265713 BAM hg38 a76bbc4e-73d6-452c-8993-b8b3c830587b storage1 -C3L-04083.WXS.N C3L-04083 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1bf5e1d1-526e-4246-868c-4999e8ed252f/CPT0243420002.WholeExome.RP-1303.bam 21584884315 BAM hg19 1bf5e1d1-526e-4246-868c-4999e8ed252f storage1 C3L-04083.WXS.N.hg38 C3L-04083 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc4f43a8-3da1-4df6-94d3-48d461e679a2/d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wxs_gdc_realn.bam 29729626446 BAM hg38 cc4f43a8-3da1-4df6-94d3-48d461e679a2 storage1 -C3L-04083.WXS.T C3L-04083 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c90b0f71-da42-434e-a69f-a96bfd274fdf/CPT0242430007.WholeExome.RP-1303.bam 19954045723 BAM hg19 c90b0f71-da42-434e-a69f-a96bfd274fdf storage1 C3L-04083.WXS.T.hg38 C3L-04083 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502835bd-e7db-4616-8f28-dca0053b4397/c66bf4aa-16ce-43f4-a353-8244577bf31a_wxs_gdc_realn.bam 28832541743 BAM hg38 502835bd-e7db-4616-8f28-dca0053b4397 storage1 C3L-04084.RNA-Seq.chimeric.T.hg38 C3L-04084 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7376c08c-6e29-4f9e-b0d7-3aa83fa02cea/4a44e047-294c-41ac-8fbe-68fef0c3144a.rna_seq.chimeric.gdc_realn.bam 121675997 BAM hg38 7376c08c-6e29-4f9e-b0d7-3aa83fa02cea storage1 C3L-04084.RNA-Seq.R1.T C3L-04084 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c130ea-b93b-4fa3-9d65-ec453849df62/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ NA b2c130ea-b93b-4fa3-9d65-ec453849df62 storage1 C3L-04084.RNA-Seq.R2.T C3L-04084 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5862426d-2acc-420a-92be-9a0bbfca35d4/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ NA 5862426d-2acc-420a-92be-9a0bbfca35d4 storage1 C3L-04084.RNA-Seq.transcriptome.T.hg38 C3L-04084 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b716fc6-942b-4460-9222-d3a7bce01d8c/4a44e047-294c-41ac-8fbe-68fef0c3144a.rna_seq.transcriptome.gdc_realn.bam 9104583220 BAM hg38 2b716fc6-942b-4460-9222-d3a7bce01d8c storage1 -C3L-04084.WGS.N C3L-04084 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5682d807-fda5-4e8c-9a39-4ca8e38df754/CPT0218020002.WholeGenome.RP-1303.bam 53676724410 BAM hg19 5682d807-fda5-4e8c-9a39-4ca8e38df754 storage1 C3L-04084.WGS.N.hg38 C3L-04084 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b481775-6b55-4ac6-811e-30d61f8628a9/2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wgs_gdc_realn.bam 77845598765 BAM hg38 5b481775-6b55-4ac6-811e-30d61f8628a9 storage1 -C3L-04084.WGS.T C3L-04084 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b568706-c1f6-47aa-a0da-73d9c6709f98/CPT0217100006.WholeGenome.RP-1303.bam 60903190480 BAM hg19 6b568706-c1f6-47aa-a0da-73d9c6709f98 storage1 C3L-04084.WGS.T.hg38 C3L-04084 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b387bac-d0d0-477d-a0d2-b93d22100e1a/a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wgs_gdc_realn.bam 89876705074 BAM hg38 9b387bac-d0d0-477d-a0d2-b93d22100e1a storage1 -C3L-04084.WXS.N C3L-04084 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90cf816c-31bb-4c98-a055-e9a16bd34df3/CPT0218020002.WholeExome.RP-1303.bam 26256467143 BAM hg19 90cf816c-31bb-4c98-a055-e9a16bd34df3 storage1 -C3L-04084.WXS.T C3L-04084 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd388923-0a5f-417f-992b-30d6e0352443/CPT0217100006.WholeExome.RP-1303.bam 28674645437 BAM hg19 dd388923-0a5f-417f-992b-30d6e0352443 storage1 C3L-04085.RNA-Seq.R1.T C3L-04085 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25f5bea4-fef4-4378-9ccb-8a5befebf88a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ NA 25f5bea4-fef4-4378-9ccb-8a5befebf88a storage1 C3L-04085.RNA-Seq.R2.T C3L-04085 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0486b67-d5ff-4ae5-97ff-218d95b1e496/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ NA f0486b67-d5ff-4ae5-97ff-218d95b1e496 storage1 -C3L-04085.WGS.N C3L-04085 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01ee3659-ba85-44ef-b3f6-0af789f0ac5f/CPT0243440002.WholeGenome.RP-2158.bam 22966209999 BAM hg19 01ee3659-ba85-44ef-b3f6-0af789f0ac5f storage1 C3L-04085.WGS.N.hg38 C3L-04085 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71b6faf7-a10b-4bc5-b997-e075c6806937/a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 68911988155 BAM hg38 71b6faf7-a10b-4bc5-b997-e075c6806937 storage1 -C3L-04085.WGS.T C3L-04085 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc6a67f7-5b0c-428b-875e-8a1443af63f5/CPT0242520007.WholeGenome.RP-2158.bam 22101856002 BAM hg19 fc6a67f7-5b0c-428b-875e-8a1443af63f5 storage1 C3L-04085.WGS.T.hg38 C3L-04085 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c2f1712-0980-4d6f-9dda-6c10a459d864/c775700c-9771-4aba-ae72-32627a2c70e2_wgs_gdc_realn.bam 67958029587 BAM hg38 7c2f1712-0980-4d6f-9dda-6c10a459d864 storage1 -C3L-04085.WXS.N C3L-04085 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f09d693-58d4-4604-920f-69d7385f0be8/CPT0243440002.WholeExome.RP-1303.bam 21928962196 BAM hg19 1f09d693-58d4-4604-920f-69d7385f0be8 storage1 C3L-04085.WXS.N.hg38 C3L-04085 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d44c795-adb4-4675-be59-17570b206f0c/a70f4fe0-29b6-40d6-877a-4754cb2270cf_wxs_gdc_realn.bam 30775678379 BAM hg38 2d44c795-adb4-4675-be59-17570b206f0c storage1 -C3L-04085.WXS.T C3L-04085 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac44b834-57a0-4a5e-99aa-f58c500d1c8c/CPT0242520007.WholeExome.RP-1303.bam 26495108597 BAM hg19 ac44b834-57a0-4a5e-99aa-f58c500d1c8c storage1 C3L-04085.WXS.T.hg38 C3L-04085 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2d7379c-8a42-42f2-90eb-2121d85516b5/c775700c-9771-4aba-ae72-32627a2c70e2_wxs_gdc_realn.bam 35779081908 BAM hg38 d2d7379c-8a42-42f2-90eb-2121d85516b5 storage1 C3L-04090.RNA-Seq.R1.T C3L-04090 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a8aec46-4acd-4c73-96c3-ab521a638114/200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R1_001.fastq.gz 4945213572 FASTQ NA 9a8aec46-4acd-4c73-96c3-ab521a638114 storage1 C3L-04090.RNA-Seq.R2.T C3L-04090 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3e5d01b-6efa-4a68-9f27-d3d6955b01e5/200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R2_001.fastq.gz 5597226556 FASTQ NA c3e5d01b-6efa-4a68-9f27-d3d6955b01e5 storage1 -C3L-04090.WGS.N C3L-04090 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38c663ab-d41b-4605-80f4-21334e899a9f/CPT0264100002.WholeGenome.RP-2158.bam 28096864252 BAM hg19 38c663ab-d41b-4605-80f4-21334e899a9f storage1 C3L-04090.WGS.N.hg38 C3L-04090 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b005d5ce-da55-4484-b85f-33250d2f2f93/cd982953-0066-4729-91e5-ccf5800c6287_wgs_gdc_realn.bam 83572926292 BAM hg38 b005d5ce-da55-4484-b85f-33250d2f2f93 storage1 -C3L-04090.WGS.T C3L-04090 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/281321cf-ff95-40ef-973a-1cdd931c914e/CPT0265630007.WholeGenome.RP-2158.bam 31570550494 BAM hg19 281321cf-ff95-40ef-973a-1cdd931c914e storage1 C3L-04090.WGS.T.hg38 C3L-04090 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3ab0336-b7dc-4739-a99c-faf95f70764c/0dc0882f-2967-4268-afaa-eff7fa83e921_wgs_gdc_realn.bam 92533479255 BAM hg38 c3ab0336-b7dc-4739-a99c-faf95f70764c storage1 -C3L-04090.WXS.N C3L-04090 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5750679-d8a2-4b5e-be9e-6663efc7225c/CPT0264100002.WholeExome.RP-1303.bam 24947982395 BAM hg19 f5750679-d8a2-4b5e-be9e-6663efc7225c storage1 C3L-04090.WXS.N.hg38 C3L-04090 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb068c31-d894-43ba-b308-3b1f97d8c15e/cd982953-0066-4729-91e5-ccf5800c6287_wxs_gdc_realn.bam 34156625605 BAM hg38 cb068c31-d894-43ba-b308-3b1f97d8c15e storage1 -C3L-04090.WXS.T C3L-04090 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/494ab4e9-c16b-4840-8abd-fd9e5e21cb99/CPT0265630007.WholeExome.RP-1303.bam 20161190594 BAM hg19 494ab4e9-c16b-4840-8abd-fd9e5e21cb99 storage1 C3L-04090.WXS.T.hg38 C3L-04090 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b65e8bd-213a-4815-b2cc-ff4733cccf2d/0dc0882f-2967-4268-afaa-eff7fa83e921_wxs_gdc_realn.bam 28215868388 BAM hg38 6b65e8bd-213a-4815-b2cc-ff4733cccf2d storage1 C3L-04197.RNA-Seq.R1.T C3L-04197 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b6ff914-fe0c-458a-8759-26b379dc0fcb/20210729_P3_G12_WB7988-Plate3_S84_R1_001.fastq.gz 3321276793 FASTQ NA 1b6ff914-fe0c-458a-8759-26b379dc0fcb storage1 C3L-04197.RNA-Seq.R2.T C3L-04197 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74b58e38-46bc-4fa0-a7ec-53e2db01d100/20210729_P3_G12_WB7988-Plate3_S84_R2_001.fastq.gz 3565568028 FASTQ NA 74b58e38-46bc-4fa0-a7ec-53e2db01d100 storage1 @@ -4507,13 +4256,9 @@ C3L-04213.RNA-Seq.R1.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04213.RNA-Seq.R1.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a18317d-3520-42dc-8003-f9561853b8dc/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ NA 3a18317d-3520-42dc-8003-f9561853b8dc storage1 C3L-04213.RNA-Seq.R2.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb64ce39-84ad-40df-801d-f1e1146356a0/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ NA fb64ce39-84ad-40df-801d-f1e1146356a0 storage1 C3L-04213.RNA-Seq.R2.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb64ce39-84ad-40df-801d-f1e1146356a0/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ NA fb64ce39-84ad-40df-801d-f1e1146356a0 storage1 -C3L-04213.WGS.N C3L-04213 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9016f6fc-f3f7-4ef3-b81e-f8d54cc931f2/CPT0277280002.WholeGenome.RP-2158.bam 27307720953 BAM hg19 9016f6fc-f3f7-4ef3-b81e-f8d54cc931f2 storage1 C3L-04213.WGS.N.hg38 C3L-04213 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4a20d36-782a-4b14-a985-15b48497ff4e/1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wgs_gdc_realn.bam 79615801627 BAM hg38 e4a20d36-782a-4b14-a985-15b48497ff4e storage1 -C3L-04213.WGS.T C3L-04213 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa0facad-8fbc-4a5d-96c2-8411703567db/CPT0277180006.WholeGenome.RP-2158.bam 21897875310 BAM hg19 fa0facad-8fbc-4a5d-96c2-8411703567db storage1 C3L-04213.WGS.T.hg38 C3L-04213 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb4472a3-b931-436b-a6f2-028f0e236229/c7af6007-1e13-438f-a4fe-d011d96669e3_wgs_gdc_realn.bam 65721149462 BAM hg38 bb4472a3-b931-436b-a6f2-028f0e236229 storage1 -C3L-04213.WXS.N C3L-04213 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac9dc9ca-abc7-466b-b437-6c0ad01f54a8/CPT0277280002.WholeExome.RP-1303.bam 22097690328 BAM hg19 ac9dc9ca-abc7-466b-b437-6c0ad01f54a8 storage1 C3L-04213.WXS.N.hg38 C3L-04213 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc11d4a-5a91-438c-9143-57a046ea5a10/1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wxs_gdc_realn.bam 30102627292 BAM hg38 3cc11d4a-5a91-438c-9143-57a046ea5a10 storage1 -C3L-04213.WXS.T C3L-04213 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37eee658-03bf-40a1-9326-cf26d313e317/CPT0277180006.WholeExome.RP-1303.bam 18647890722 BAM hg19 37eee658-03bf-40a1-9326-cf26d313e317 storage1 C3L-04213.WXS.T.hg38 C3L-04213 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c9986e7-ede7-4495-974b-2095f534a7f6/c7af6007-1e13-438f-a4fe-d011d96669e3_wxs_gdc_realn.bam 26312189759 BAM hg38 7c9986e7-ede7-4495-974b-2095f534a7f6 storage1 C3L-04216.RNA-Seq.R1.T C3L-04216 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b801f00-6d57-4304-b6f0-b622e817a416/200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R1_001.fastq.gz 3391145613 FASTQ NA 2b801f00-6d57-4304-b6f0-b622e817a416 storage1 C3L-04216.RNA-Seq.R2.T C3L-04216 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56e142e2-4864-49a1-ad2e-475bf798ac98/200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R2_001.fastq.gz 3498782473 FASTQ NA 56e142e2-4864-49a1-ad2e-475bf798ac98 storage1 @@ -4582,13 +4327,9 @@ C3L-04339.RNA-Seq.R1.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04339.RNA-Seq.R1.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6a9244a-4ab2-4f78-be63-b74401e4b903/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ NA c6a9244a-4ab2-4f78-be63-b74401e4b903 storage1 C3L-04339.RNA-Seq.R2.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ad6b56f-857b-4e87-ba96-77141a60b898/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ NA 1ad6b56f-857b-4e87-ba96-77141a60b898 storage1 C3L-04339.RNA-Seq.R2.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ad6b56f-857b-4e87-ba96-77141a60b898/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ NA 1ad6b56f-857b-4e87-ba96-77141a60b898 storage1 -C3L-04339.WGS.N C3L-04339 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1afa5fa1-59fe-4184-8c5e-e6d57323443d/CPT0258190002.WholeGenome.RP-2158.bam 25848841555 BAM hg19 1afa5fa1-59fe-4184-8c5e-e6d57323443d storage1 C3L-04339.WGS.N.hg38 C3L-04339 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a78992b6-5d44-4e49-ba64-f99c06d9700e/33f46088-32c6-48b4-8a6b-2290453f2095_wgs_gdc_realn.bam 76854036007 BAM hg38 a78992b6-5d44-4e49-ba64-f99c06d9700e storage1 -C3L-04339.WGS.T C3L-04339 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48351d83-cc2f-4826-8731-0830df0aa09c/CPT0258090006.WholeGenome.RP-2158.bam 27146278918 BAM hg19 48351d83-cc2f-4826-8731-0830df0aa09c storage1 C3L-04339.WGS.T.hg38 C3L-04339 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3dfe2c34-88ce-41e9-b6ab-88aac3b761a2/ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wgs_gdc_realn.bam 80406894411 BAM hg38 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 storage1 -C3L-04339.WXS.N C3L-04339 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/909af21e-8e05-49c8-b296-9dd8a03ebe9f/CPT0258190002.WholeExome.RP-1303.bam 20907651385 BAM hg19 909af21e-8e05-49c8-b296-9dd8a03ebe9f storage1 C3L-04339.WXS.N.hg38 C3L-04339 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/210f66ea-881d-49ae-b32c-3d39ddac7941/33f46088-32c6-48b4-8a6b-2290453f2095_wxs_gdc_realn.bam 28408035993 BAM hg38 210f66ea-881d-49ae-b32c-3d39ddac7941 storage1 -C3L-04339.WXS.T C3L-04339 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e3ea70c-2461-4d72-9a04-9e06088513c4/CPT0258090006.WholeExome.RP-1303.bam 22723005441 BAM hg19 8e3ea70c-2461-4d72-9a04-9e06088513c4 storage1 C3L-04339.WXS.T.hg38 C3L-04339 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d105a1df-c44b-46eb-aba8-6bd7b2a87af5/ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wxs_gdc_realn.bam 32992537997 BAM hg38 d105a1df-c44b-46eb-aba8-6bd7b2a87af5 storage1 C3L-04354.RNA-Seq.R1.A C3L-04354 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e239027f-e025-487d-abcc-ff9de8e34f80/190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R1_001.fastq.gz 3584955086 FASTQ NA e239027f-e025-487d-abcc-ff9de8e34f80 storage1 C3L-04354.RNA-Seq.R1.T C3L-04354 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/509c74b9-0387-4e6e-9a34-df82a0e21c15/190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ NA 509c74b9-0387-4e6e-9a34-df82a0e21c15 storage1 @@ -4600,13 +4341,9 @@ C3L-04359.RNA-Seq.R1.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04359.RNA-Seq.R1.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b42d0852-cae1-4758-a678-bc012f13aea9/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ NA b42d0852-cae1-4758-a678-bc012f13aea9 storage1 C3L-04359.RNA-Seq.R2.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88640d20-f2e8-42d8-a9aa-eb03821c31f7/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ NA 88640d20-f2e8-42d8-a9aa-eb03821c31f7 storage1 C3L-04359.RNA-Seq.R2.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88640d20-f2e8-42d8-a9aa-eb03821c31f7/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ NA 88640d20-f2e8-42d8-a9aa-eb03821c31f7 storage1 -C3L-04359.WGS.N C3L-04359 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b4ed69a-9a13-44a2-b07e-e2ee7b686d46/CPT0243350002.WholeGenome.RP-2158.bam 25332896750 BAM hg19 5b4ed69a-9a13-44a2-b07e-e2ee7b686d46 storage1 C3L-04359.WGS.N.hg38 C3L-04359 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a64412f1-74c9-486b-98a7-9eba8d21f9fb/d7706205-c0e2-4a84-a0d3-5496598cbf10_wgs_gdc_realn.bam 73863141089 BAM hg38 a64412f1-74c9-486b-98a7-9eba8d21f9fb storage1 -C3L-04359.WGS.T C3L-04359 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ed53d0f-a2e7-4652-bbe9-776bc915a317/CPT0243280006.WholeGenome.RP-2158.bam 23903590429 BAM hg19 8ed53d0f-a2e7-4652-bbe9-776bc915a317 storage1 C3L-04359.WGS.T.hg38 C3L-04359 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7d2db0a-f513-4241-9a62-c47f70046392/7dbf52e5-6cf7-44bf-b211-2941a5917899_wgs_gdc_realn.bam 70650337535 BAM hg38 d7d2db0a-f513-4241-9a62-c47f70046392 storage1 -C3L-04359.WXS.N C3L-04359 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10b4ba0a-fec2-41f2-936d-4dffb4bddd33/CPT0243350002.WholeExome.RP-1303.bam 32069118972 BAM hg19 10b4ba0a-fec2-41f2-936d-4dffb4bddd33 storage1 C3L-04359.WXS.N.hg38 C3L-04359 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a9ab409-f15c-49f9-b566-0c21bbedb03d/d7706205-c0e2-4a84-a0d3-5496598cbf10_wxs_gdc_realn.bam 43853685171 BAM hg38 0a9ab409-f15c-49f9-b566-0c21bbedb03d storage1 -C3L-04359.WXS.T C3L-04359 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24e7e71e-5588-4fb1-8837-044df6abd811/CPT0243280006.WholeExome.RP-1303.bam 29459091783 BAM hg19 24e7e71e-5588-4fb1-8837-044df6abd811 storage1 C3L-04359.WXS.T.hg38 C3L-04359 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5308095c-11ed-4bf5-a175-0a632a0a250a/7dbf52e5-6cf7-44bf-b211-2941a5917899_wxs_gdc_realn.bam 40884138168 BAM hg38 5308095c-11ed-4bf5-a175-0a632a0a250a storage1 C3L-04361.RNA-Seq.R1.A C3L-04361 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36a67212-56b0-4ecc-a9e5-3f1399f8df22/200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R1_001.fastq.gz 3528552695 FASTQ NA 36a67212-56b0-4ecc-a9e5-3f1399f8df22 storage1 C3L-04361.RNA-Seq.R1.T C3L-04361 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4319f038-f4b4-4273-8fa2-ee5269adce7c/200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R1_001.fastq.gz 3669104306 FASTQ NA 4319f038-f4b4-4273-8fa2-ee5269adce7c storage1 @@ -4618,13 +4355,9 @@ C3L-04362.RNA-Seq.R1.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04362.RNA-Seq.R1.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ NA 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c storage1 C3L-04362.RNA-Seq.R2.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/710ec59e-1735-4dd5-ba70-ce35329cac5c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ NA 710ec59e-1735-4dd5-ba70-ce35329cac5c storage1 C3L-04362.RNA-Seq.R2.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/710ec59e-1735-4dd5-ba70-ce35329cac5c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ NA 710ec59e-1735-4dd5-ba70-ce35329cac5c storage1 -C3L-04362.WGS.N C3L-04362 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48b7e473-ab3c-4dd1-85a5-170e3044b384/CPT0233870002.WholeGenome.RP-2158.bam 21818987189 BAM hg19 48b7e473-ab3c-4dd1-85a5-170e3044b384 storage1 C3L-04362.WGS.N.hg38 C3L-04362 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ac3d361-eef2-4263-85c2-f8748a9379cf/6b29a573-c2f6-4614-9f25-14c918babfa8_wgs_gdc_realn.bam 62812379070 BAM hg38 1ac3d361-eef2-4263-85c2-f8748a9379cf storage1 -C3L-04362.WGS.T C3L-04362 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83bea774-1862-4ec9-8f58-e724421f7f1f/CPT0233810006.WholeGenome.RP-2158.bam 25430839932 BAM hg19 83bea774-1862-4ec9-8f58-e724421f7f1f storage1 C3L-04362.WGS.T.hg38 C3L-04362 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dddd8326-8131-4431-8f69-3bb571ce57e9/54bcff95-090d-41c1-92c6-66140f4b3ab9_wgs_gdc_realn.bam 73951272849 BAM hg38 dddd8326-8131-4431-8f69-3bb571ce57e9 storage1 -C3L-04362.WXS.N C3L-04362 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c1fda25-6db9-4fef-abce-0bd6d84af2c5/CPT0233870002.WholeExome.RP-1303.bam 34607798389 BAM hg19 8c1fda25-6db9-4fef-abce-0bd6d84af2c5 storage1 C3L-04362.WXS.N.hg38 C3L-04362 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39a56545-fb06-4f46-bec5-44025a89bc72/6b29a573-c2f6-4614-9f25-14c918babfa8_wxs_gdc_realn.bam 47074453455 BAM hg38 39a56545-fb06-4f46-bec5-44025a89bc72 storage1 -C3L-04362.WXS.T C3L-04362 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f329c74e-37e8-4d8b-b491-2cce7ee8954b/CPT0233810006.WholeExome.RP-1303.bam 22808134674 BAM hg19 f329c74e-37e8-4d8b-b491-2cce7ee8954b storage1 C3L-04362.WXS.T.hg38 C3L-04362 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9777e76d-b1b6-4f1d-b8d7-592e2e538b4b/54bcff95-090d-41c1-92c6-66140f4b3ab9_wxs_gdc_realn.bam 32536843115 BAM hg38 9777e76d-b1b6-4f1d-b8d7-592e2e538b4b storage1 C3L-04365.RNA-Seq.R1.A C3L-04365 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc53dff1-6948-4f36-9950-acd8af23606b/190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 5996872719 FASTQ NA bc53dff1-6948-4f36-9950-acd8af23606b storage1 C3L-04365.RNA-Seq.R1.T C3L-04365 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4bfca38-143c-4f88-b32c-7e398e7bfa49/190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R1_001.fastq.gz 4657284691 FASTQ NA c4bfca38-143c-4f88-b32c-7e398e7bfa49 storage1 @@ -4658,13 +4391,9 @@ C3L-04391.WGS.N.hg38 C3L-04391 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-04391.WGS.T.hg38 C3L-04391 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0693edc4-6418-4abd-a114-d378f88dd700/a52caf88-af54-482a-adcc-5c303877aa1b_wgs_gdc_realn.bam 81007262049 BAM hg38 0693edc4-6418-4abd-a114-d378f88dd700 storage1 C3L-04392.RNA-Seq.R1.T C3L-04392 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d815c7ac-1edc-4e57-a53b-947849bdb025/201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ NA d815c7ac-1edc-4e57-a53b-947849bdb025 storage1 C3L-04392.RNA-Seq.R2.T C3L-04392 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65353cb8-0cb1-4747-a95d-b11ff0bc7361/201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ NA 65353cb8-0cb1-4747-a95d-b11ff0bc7361 storage1 -C3L-04392.WGS.N C3L-04392 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f243bcd7-9195-4d38-817f-618977fb28eb/CPT0392370002.WholeGenome.RP-2158.bam 24049436111 BAM hg19 f243bcd7-9195-4d38-817f-618977fb28eb storage1 C3L-04392.WGS.N.hg38 C3L-04392 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/322aa7fa-fc71-4c68-9bc9-72cc87cfb567/ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 71169654491 BAM hg38 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 storage1 -C3L-04392.WGS.T C3L-04392 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35aee152-5492-4664-8706-ca92247a2a81/CPT0393310006.WholeGenome.RP-2158.bam 25106387064 BAM hg19 35aee152-5492-4664-8706-ca92247a2a81 storage1 C3L-04392.WGS.T.hg38 C3L-04392 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa97d6a5-ecfe-4536-8f34-dc07208769eb/156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wgs_gdc_realn.bam 78098439529 BAM hg38 aa97d6a5-ecfe-4536-8f34-dc07208769eb storage1 -C3L-04392.WXS.N C3L-04392 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/097aa948-f10b-46c4-b757-6cdb889edd9a/CPT0392370002.WholeExome.RP-1303.bam 29321820408 BAM hg19 097aa948-f10b-46c4-b757-6cdb889edd9a storage1 C3L-04392.WXS.N.hg38 C3L-04392 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad13323f-754b-4392-8a91-3cc76915b63c/ff58cfa7-a42b-4c49-81b2-a55b9d871181_wxs_gdc_realn.bam 40870259415 BAM hg38 ad13323f-754b-4392-8a91-3cc76915b63c storage1 -C3L-04392.WXS.T C3L-04392 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c050abe1-2236-4049-91c5-97cfb29cf143/CPT0393310006.WholeExome.RP-1303.bam 23350456251 BAM hg19 c050abe1-2236-4049-91c5-97cfb29cf143 storage1 C3L-04392.WXS.T.hg38 C3L-04392 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96e5a83a-8889-43f6-abe3-2ce778568d80/156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wxs_gdc_realn.bam 32227999506 BAM hg38 96e5a83a-8889-43f6-abe3-2ce778568d80 storage1 C3L-04402.RNA-Seq.R1.T C3L-04402 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd64d4c2-e55f-4b11-8b79-424993ec283f/200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R1_001.fastq.gz 3116262455 FASTQ NA fd64d4c2-e55f-4b11-8b79-424993ec283f storage1 C3L-04402.RNA-Seq.R2.T C3L-04402 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fcae66d9-1278-4d7a-85c1-0f8151392c0c/200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R2_001.fastq.gz 3434270972 FASTQ NA fcae66d9-1278-4d7a-85c1-0f8151392c0c storage1 @@ -4742,25 +4471,17 @@ C3L-04537.RNA-Seq.R1.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04537.RNA-Seq.R1.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adf59d70-7072-4025-8eba-01d2dcd6e667/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ NA adf59d70-7072-4025-8eba-01d2dcd6e667 storage1 C3L-04537.RNA-Seq.R2.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd035eaf-a77f-4b9b-af7d-f4c0af78fac7/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ NA cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 storage1 C3L-04537.RNA-Seq.R2.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd035eaf-a77f-4b9b-af7d-f4c0af78fac7/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ NA cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 storage1 -C3L-04537.WGS.N C3L-04537 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c3e04d4-4e57-430d-9ed0-3ba74a599c96/CPT0265790002.WholeGenome.RP-2158.bam 28393863499 BAM hg19 4c3e04d4-4e57-430d-9ed0-3ba74a599c96 storage1 C3L-04537.WGS.N.hg38 C3L-04537 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90c46761-ce1b-43f8-ae6a-af25020697fe/b2eb19a2-f110-438f-b16c-26dc0f691c14_wgs_gdc_realn.bam 84679557904 BAM hg38 90c46761-ce1b-43f8-ae6a-af25020697fe storage1 -C3L-04537.WGS.T C3L-04537 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7552f3d-2324-4f5d-a10d-aa1a3b3520df/CPT0264330006.WholeGenome.RP-2158.bam 35253805632 BAM hg19 b7552f3d-2324-4f5d-a10d-aa1a3b3520df storage1 C3L-04537.WGS.T.hg38 C3L-04537 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14a5f061-baa1-413d-a21d-4a266877dc04/20533eda-81e3-40c8-842b-40b3e338127c_wgs_gdc_realn.bam 105840080534 BAM hg38 14a5f061-baa1-413d-a21d-4a266877dc04 storage1 -C3L-04537.WXS.N C3L-04537 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/084de537-e6d0-47bb-b803-18328837cf04/CPT0265790002.WholeExome.RP-1303.bam 18886184900 BAM hg19 084de537-e6d0-47bb-b803-18328837cf04 storage1 C3L-04537.WXS.N.hg38 C3L-04537 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84320c1f-226b-431c-8240-fe28ad4a4894/b2eb19a2-f110-438f-b16c-26dc0f691c14_wxs_gdc_realn.bam 25476423801 BAM hg38 84320c1f-226b-431c-8240-fe28ad4a4894 storage1 -C3L-04537.WXS.T C3L-04537 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d94de8f2-a9d7-4bcc-a5ca-7fcf6dc65790/CPT0264330006.WholeExome.RP-1303.bam 16941472007 BAM hg19 d94de8f2-a9d7-4bcc-a5ca-7fcf6dc65790 storage1 C3L-04537.WXS.T.hg38 C3L-04537 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2ea7a2e-737f-4704-8731-492f2cd1c8e9/20533eda-81e3-40c8-842b-40b3e338127c_wxs_gdc_realn.bam 24973995963 BAM hg38 d2ea7a2e-737f-4704-8731-492f2cd1c8e9 storage1 C3L-04539.RNA-Seq.R1.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b56e66a-4850-46ec-b519-5379c91aa066/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ NA 9b56e66a-4850-46ec-b519-5379c91aa066 storage1 C3L-04539.RNA-Seq.R1.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b56e66a-4850-46ec-b519-5379c91aa066/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ NA 9b56e66a-4850-46ec-b519-5379c91aa066 storage1 C3L-04539.RNA-Seq.R2.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a856d4a-bb70-45dc-af41-53ec656ffc10/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ NA 5a856d4a-bb70-45dc-af41-53ec656ffc10 storage1 C3L-04539.RNA-Seq.R2.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a856d4a-bb70-45dc-af41-53ec656ffc10/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ NA 5a856d4a-bb70-45dc-af41-53ec656ffc10 storage1 -C3L-04539.WGS.N C3L-04539 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de26b2e4-b960-4ff2-bdb0-ef982fa91c77/CPT0265800002.WholeGenome.RP-2158.bam 35537633707 BAM hg19 de26b2e4-b960-4ff2-bdb0-ef982fa91c77 storage1 C3L-04539.WGS.N.hg38 C3L-04539 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35697bb3-4b0e-498e-86b8-045a3b37c481/56cd7cd6-c6e0-4a44-90df-b10abcd38233_wgs_gdc_realn.bam 106937786996 BAM hg38 35697bb3-4b0e-498e-86b8-045a3b37c481 storage1 -C3L-04539.WGS.T C3L-04539 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fe4e777-e8ff-4089-9f15-42ca3ac3d0e7/CPT0264350006.WholeGenome.RP-2158.bam 25110093183 BAM hg19 9fe4e777-e8ff-4089-9f15-42ca3ac3d0e7 storage1 C3L-04539.WGS.T.hg38 C3L-04539 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/340ee94a-a5d8-4417-b332-3d171f38544c/db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wgs_gdc_realn.bam 73888912902 BAM hg38 340ee94a-a5d8-4417-b332-3d171f38544c storage1 -C3L-04539.WXS.N C3L-04539 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ec1ce3e-b174-4d8c-b4a6-df52f55f7fbd/CPT0265800002.WholeExome.RP-1303.bam 22916690436 BAM hg19 7ec1ce3e-b174-4d8c-b4a6-df52f55f7fbd storage1 C3L-04539.WXS.N.hg38 C3L-04539 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b6bf6d8-1ba8-40f2-b72c-7209488eb46d/56cd7cd6-c6e0-4a44-90df-b10abcd38233_wxs_gdc_realn.bam 32221310803 BAM hg38 5b6bf6d8-1ba8-40f2-b72c-7209488eb46d storage1 -C3L-04539.WXS.T C3L-04539 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3a91aa6-8512-457b-8e07-7495071ebab8/CPT0264350006.WholeExome.RP-1303.bam 18379018263 BAM hg19 c3a91aa6-8512-457b-8e07-7495071ebab8 storage1 C3L-04539.WXS.T.hg38 C3L-04539 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44d32def-ea17-4d6a-97a9-4326d8d2d45b/db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wxs_gdc_realn.bam 25583695395 BAM hg38 44d32def-ea17-4d6a-97a9-4326d8d2d45b storage1 C3L-04728.RNA-Seq.R1.T C3L-04728 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53da8d54-81eb-4038-88b2-3196cb814a69/200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R1_001.fastq.gz 5549023600 FASTQ NA 53da8d54-81eb-4038-88b2-3196cb814a69 storage1 C3L-04728.RNA-Seq.R2.T C3L-04728 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/872ca10d-39ab-43d2-a514-281d77055d1e/200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R2_001.fastq.gz 5848132575 FASTQ NA 872ca10d-39ab-43d2-a514-281d77055d1e storage1 @@ -4770,13 +4491,9 @@ C3L-04731.RNA-Seq.R1.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04731.RNA-Seq.R1.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdcc07bb-3566-4ad0-b8af-832168038559/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ NA fdcc07bb-3566-4ad0-b8af-832168038559 storage1 C3L-04731.RNA-Seq.R2.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d82e8a6e-aaca-4d9d-b26e-96046b568d10/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ NA d82e8a6e-aaca-4d9d-b26e-96046b568d10 storage1 C3L-04731.RNA-Seq.R2.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d82e8a6e-aaca-4d9d-b26e-96046b568d10/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ NA d82e8a6e-aaca-4d9d-b26e-96046b568d10 storage1 -C3L-04731.WGS.N C3L-04731 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5bf7f78d-ac65-472b-b155-cc53b9de62b7/CPT0258420002.WholeGenome.RP-2158.bam 24023306337 BAM hg19 5bf7f78d-ac65-472b-b155-cc53b9de62b7 storage1 C3L-04731.WGS.N.hg38 C3L-04731 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1a5f165-da82-4896-bd87-83d56f133baa/580da526-9175-4120-8b85-febc8c389b31_wgs_gdc_realn.bam 72428099741 BAM hg38 d1a5f165-da82-4896-bd87-83d56f133baa storage1 -C3L-04731.WGS.T C3L-04731 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c18a3425-ebed-4e66-8bab-35f8bf4fcb29/CPT0258360006.WholeGenome.RP-2158.bam 25501382330 BAM hg19 c18a3425-ebed-4e66-8bab-35f8bf4fcb29 storage1 C3L-04731.WGS.T.hg38 C3L-04731 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/487eb7fd-571b-4593-b357-bbb90037e3c8/b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wgs_gdc_realn.bam 73442457570 BAM hg38 487eb7fd-571b-4593-b357-bbb90037e3c8 storage1 -C3L-04731.WXS.N C3L-04731 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42c91ebd-2a1f-4930-8383-b5e60d40a502/CPT0258420002.WholeExome.RP-1303.bam 35813867996 BAM hg19 42c91ebd-2a1f-4930-8383-b5e60d40a502 storage1 C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fbd34a9-fc9d-4c2c-ba3b-96ffed456256/580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM hg38 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 storage1 -C3L-04731.WXS.T C3L-04731 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4fe1c9a-c8ad-4d80-9f4e-f046c886dae5/CPT0258360006.WholeExome.RP-1303.bam 19673439486 BAM hg19 c4fe1c9a-c8ad-4d80-9f4e-f046c886dae5 storage1 C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b265dc17-8180-4962-8576-87cfde01f80d/b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM hg38 b265dc17-8180-4962-8576-87cfde01f80d storage1 C3L-04746.RNA-Seq.R1.A C3L-04746 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fa7166d-8384-4103-8c9f-7f5088af16d5/200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R1_001.fastq.gz 3452803753 FASTQ NA 6fa7166d-8384-4103-8c9f-7f5088af16d5 storage1 C3L-04746.RNA-Seq.R1.T C3L-04746 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eff0d265-610e-4573-9937-6ce7611a7551/200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R1_001.fastq.gz 3686471434 FASTQ NA eff0d265-610e-4573-9937-6ce7611a7551 storage1 @@ -4849,13 +4566,9 @@ C3L-04795.RNA-Seq.R1.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04795.RNA-Seq.R1.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ff10436-30c0-4571-a5f1-db72929506b8/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ NA 0ff10436-30c0-4571-a5f1-db72929506b8 storage1 C3L-04795.RNA-Seq.R2.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c4c707-2ecb-44db-9c2b-04a6f624d67f/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ NA d3c4c707-2ecb-44db-9c2b-04a6f624d67f storage1 C3L-04795.RNA-Seq.R2.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c4c707-2ecb-44db-9c2b-04a6f624d67f/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ NA d3c4c707-2ecb-44db-9c2b-04a6f624d67f storage1 -C3L-04795.WGS.N C3L-04795 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5594591-b0be-46d5-a50b-687a1116392c/CPT0257730002.WholeGenome.RP-2158.bam 21078681011 BAM hg19 d5594591-b0be-46d5-a50b-687a1116392c storage1 C3L-04795.WGS.N.hg38 C3L-04795 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2cabdf1-f980-49c4-b2bf-e877bcd84a37/66331f85-ba28-4eb8-9df1-60a3cd38d91a_wgs_gdc_realn.bam 59840869093 BAM hg38 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 storage1 -C3L-04795.WGS.T C3L-04795 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a47b409b-7dcf-4b2a-b0b0-d101f0883464/CPT0257640006.WholeGenome.RP-2158.bam 29876299653 BAM hg19 a47b409b-7dcf-4b2a-b0b0-d101f0883464 storage1 C3L-04795.WGS.T.hg38 C3L-04795 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10d0d280-5380-4979-84b9-54470cf8aae8/376e0e57-4948-421b-a670-e310f4072910_wgs_gdc_realn.bam 88596718616 BAM hg38 10d0d280-5380-4979-84b9-54470cf8aae8 storage1 -C3L-04795.WXS.N C3L-04795 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/26d444b9-7835-4344-9f0c-2ad18b4c93e1/CPT0257730002.WholeExome.RP-1303.bam 28990985033 BAM hg19 26d444b9-7835-4344-9f0c-2ad18b4c93e1 storage1 C3L-04795.WXS.N.hg38 C3L-04795 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bba78a37-3fd2-4f10-bd89-b298362fed0e/66331f85-ba28-4eb8-9df1-60a3cd38d91a_wxs_gdc_realn.bam 39013789635 BAM hg38 bba78a37-3fd2-4f10-bd89-b298362fed0e storage1 -C3L-04795.WXS.T C3L-04795 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b0cbbdb-5519-478f-8a0d-0ae8ed08c3d2/CPT0257640006.WholeExome.RP-1303.bam 22044187706 BAM hg19 1b0cbbdb-5519-478f-8a0d-0ae8ed08c3d2 storage1 C3L-04795.WXS.T.hg38 C3L-04795 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/281e34f3-b97d-4b82-93a2-12421209116a/376e0e57-4948-421b-a670-e310f4072910_wxs_gdc_realn.bam 30536537645 BAM hg38 281e34f3-b97d-4b82-93a2-12421209116a storage1 C3L-04804.RNA-Seq.R1.A C3L-04804 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dc0c8e5-af32-494f-87ce-addfc5172591/200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R1_001.fastq.gz 3954974557 FASTQ NA 1dc0c8e5-af32-494f-87ce-addfc5172591 storage1 C3L-04804.RNA-Seq.R1.T C3L-04804 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f1df38c-a08a-4163-9c6f-040406b7c08b/200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R1_001.fastq.gz 3630606497 FASTQ NA 8f1df38c-a08a-4163-9c6f-040406b7c08b storage1 @@ -5079,13 +4792,9 @@ C3L-05225.WGS.N.hg38 C3L-05225 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-05225.WGS.T.hg38 C3L-05225 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03956b75-1a7a-4dda-aec7-6efa70957bc1/81cdcf02-73f2-42cc-9306-818c9c6869ae_wgs_gdc_realn.bam 72293079183 BAM hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 storage1 C3L-05239.RNA-Seq.R1.T C3L-05239 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8161f3a1-1b1a-442f-aaf3-faabd976c99a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ NA 8161f3a1-1b1a-442f-aaf3-faabd976c99a storage1 C3L-05239.RNA-Seq.R2.T C3L-05239 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2cc1d59-536e-4c59-89df-f6808282e91f/201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ NA b2cc1d59-536e-4c59-89df-f6808282e91f storage1 -C3L-05239.WGS.N C3L-05239 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f50882a9-ba11-46d8-8ae1-b3db9fe73ca6/CPT0346770002.WholeGenome.RP-2158.bam 24306484177 BAM hg19 f50882a9-ba11-46d8-8ae1-b3db9fe73ca6 storage1 C3L-05239.WGS.N.hg38 C3L-05239 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74558bd0-2f33-412a-acc6-0274e7abf989/445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 69573503614 BAM hg38 74558bd0-2f33-412a-acc6-0274e7abf989 storage1 -C3L-05239.WGS.T C3L-05239 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f728e2a-492a-4fd8-b33a-3cfd30bba9cf/CPT0346710006.WholeGenome.RP-2158.bam 23404612085 BAM hg19 5f728e2a-492a-4fd8-b33a-3cfd30bba9cf storage1 C3L-05239.WGS.T.hg38 C3L-05239 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec7424a2-cc70-4745-8abf-830399c53864/7afb0ddf-9395-4033-a349-4d98081ffbe8_wgs_gdc_realn.bam 68789425438 BAM hg38 ec7424a2-cc70-4745-8abf-830399c53864 storage1 -C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8806b58-3c7b-4542-bba9-fb85d3bcd231/CPT0346770002.WholeExome.RP-1303.bam 19041494244 BAM hg19 e8806b58-3c7b-4542-bba9-fb85d3bcd231 storage1 C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14ce0eec-58af-472c-bae3-fdc1f9a2d1eb/445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM hg38 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb storage1 -C3L-05239.WXS.T C3L-05239 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12ae1706-4063-446f-931a-67559587801f/CPT0346710006.WholeExome.RP-1303.bam 18743445741 BAM hg19 12ae1706-4063-446f-931a-67559587801f storage1 C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73dcd24f-0fde-46b2-a48b-11f402c43c99/7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM hg38 73dcd24f-0fde-46b2-a48b-11f402c43c99 storage1 C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9da0a924-2012-45f6-a2ec-f58170dd4a24/f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM hg38 9da0a924-2012-45f6-a2ec-f58170dd4a24 storage1 C3L-05313.RNA-Seq.R1.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88212c9f-4a92-44be-acaa-3ff7e515ee07/210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R1_001.fastq.gz 4426516378 FASTQ NA 88212c9f-4a92-44be-acaa-3ff7e515ee07 storage1 @@ -6352,42 +6061,26 @@ C3N-00661.RNA-Seq.chimeric.T.hg38 C3N-00661 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-00661.RNA-Seq.R1.T C3N-00661 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f21d54f-4e17-4dd1-8e30-aa61b33dfa23/171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4280820344 FASTQ NA 0f21d54f-4e17-4dd1-8e30-aa61b33dfa23 storage1 C3N-00661.RNA-Seq.R2.T C3N-00661 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb42cdf1-e194-4a1b-8bc8-64238ecc880b/171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4715271403 FASTQ NA cb42cdf1-e194-4a1b-8bc8-64238ecc880b storage1 C3N-00661.RNA-Seq.transcriptome.T.hg38 C3N-00661 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/067bbb65-a504-44d4-8c1c-f4338669306a/b260219c-c945-48ed-8b9f-288a773bd1bb.rna_seq.transcriptome.gdc_realn.bam 9055178451 BAM hg38 067bbb65-a504-44d4-8c1c-f4338669306a storage1 -C3N-00661.WGS.N C3N-00661 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29a5aa8b-57bf-45d6-ba8a-f780e31af35d/CPT0087650002.WholeGenome.RP-1303.bam 61808855431 BAM hg19 29a5aa8b-57bf-45d6-ba8a-f780e31af35d storage1 C3N-00661.WGS.N.hg38 C3N-00661 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f/e997aa99-cb00-4512-ba9d-89c014720977_wgs_gdc_realn.bam 91546572846 BAM hg38 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f storage1 -C3N-00661.WGS.T C3N-00661 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dee44719-4644-4e07-abe3-c2c4a2328696/CPT0087570009.WholeGenome.RP-1303.bam 66764756872 BAM hg19 dee44719-4644-4e07-abe3-c2c4a2328696 storage1 C3N-00661.WGS.T.hg38 C3N-00661 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fed7e32-d8c9-46cf-8ace-368ede492a80/3bce098d-2249-4ea7-8832-b1a436035810_wgs_gdc_realn.bam 98029268406 BAM hg38 2fed7e32-d8c9-46cf-8ace-368ede492a80 storage1 -C3N-00661.WXS.N C3N-00661 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1d9d4bb-d5e6-40d9-bd29-315747bfa0a3/CPT0087650002.WholeExome.RP-1303.bam 40035642416 BAM hg19 c1d9d4bb-d5e6-40d9-bd29-315747bfa0a3 storage1 -C3N-00661.WXS.T C3N-00661 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2bf53bfc-b3a0-4a39-ac8f-97f38f3ef39e/CPT0087570009.WholeExome.RP-1303.bam 33966809743 BAM hg19 2bf53bfc-b3a0-4a39-ac8f-97f38f3ef39e storage1 C3N-00662.RNA-Seq.chimeric.T.hg38 C3N-00662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a98f9d50-9175-4a4e-aeb0-482032ef7535/7ecb1fa8-f5c1-40b6-8909-8a6232ae461f.rna_seq.chimeric.gdc_realn.bam 38679363 BAM hg38 a98f9d50-9175-4a4e-aeb0-482032ef7535 storage1 C3N-00662.RNA-Seq.R1.T C3N-00662 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe0a5bd8-4326-43e3-83ec-db254421bb70/171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3857129343 FASTQ NA fe0a5bd8-4326-43e3-83ec-db254421bb70 storage1 C3N-00662.RNA-Seq.R2.T C3N-00662 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/661d6dae-cc63-4161-81eb-b7347bf223d0/171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4284638564 FASTQ NA 661d6dae-cc63-4161-81eb-b7347bf223d0 storage1 C3N-00662.RNA-Seq.transcriptome.T.hg38 C3N-00662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/caa0a2cb-e6ef-42a7-a86c-7ab237d78bf1/7ecb1fa8-f5c1-40b6-8909-8a6232ae461f.rna_seq.transcriptome.gdc_realn.bam 7440177034 BAM hg38 caa0a2cb-e6ef-42a7-a86c-7ab237d78bf1 storage1 -C3N-00662.WGS.N C3N-00662 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83b1d3cf-b33a-4011-88e5-41f602fc0922/CPT0087720002.WholeGenome.RP-1303.bam 58036535017 BAM hg19 83b1d3cf-b33a-4011-88e5-41f602fc0922 storage1 C3N-00662.WGS.N.hg38 C3N-00662 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd1e269b-54b0-4731-a58e-dd1c5f87c097/8c165614-a7de-4661-b701-726d28c8ac3a_wgs_gdc_realn.bam 84160516593 BAM hg38 dd1e269b-54b0-4731-a58e-dd1c5f87c097 storage1 -C3N-00662.WGS.T C3N-00662 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/199a7bf3-052f-40d6-992e-80bebd989097/CPT0087680009.WholeGenome.RP-1303.bam 68144530031 BAM hg19 199a7bf3-052f-40d6-992e-80bebd989097 storage1 C3N-00662.WGS.T.hg38 C3N-00662 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/071aca22-1581-46de-b6d5-7b64afeb0d85/8ef2e973-1a92-476d-b73a-10a37332e9d7_wgs_gdc_realn.bam 100057036877 BAM hg38 071aca22-1581-46de-b6d5-7b64afeb0d85 storage1 -C3N-00662.WXS.N C3N-00662 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa384ceb-b4f7-4186-8356-b20a2c65629c/CPT0087720002.WholeExome.RP-1303.bam 26184955817 BAM hg19 fa384ceb-b4f7-4186-8356-b20a2c65629c storage1 -C3N-00662.WXS.T C3N-00662 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da42d8ec-b586-4aa9-ad85-8bd7a6e88627/CPT0087680009.WholeExome.RP-1303.bam 33349723248 BAM hg19 da42d8ec-b586-4aa9-ad85-8bd7a6e88627 storage1 C3N-00663.RNA-Seq.chimeric.T.hg38 C3N-00663 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b0b8575-1dde-406d-b7e0-2ec1b6336e10/959a2a16-9b32-473f-84ac-9dc9f81d5ec2.rna_seq.chimeric.gdc_realn.bam 54147653 BAM hg38 1b0b8575-1dde-406d-b7e0-2ec1b6336e10 storage1 C3N-00663.RNA-Seq.R1.T C3N-00663 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a81c70bb-e641-4704-9927-70d093da191b/171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R1_001.fastq.gz 4133457611 FASTQ NA a81c70bb-e641-4704-9927-70d093da191b storage1 C3N-00663.RNA-Seq.R2.T C3N-00663 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88fd4df9-3f7e-43df-8e34-e5a2f62d60a9/171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R2_001.fastq.gz 4624075046 FASTQ NA 88fd4df9-3f7e-43df-8e34-e5a2f62d60a9 storage1 C3N-00663.RNA-Seq.transcriptome.T.hg38 C3N-00663 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53b9d4b4-c7d4-4d9e-b4b2-45b2282c3585/959a2a16-9b32-473f-84ac-9dc9f81d5ec2.rna_seq.transcriptome.gdc_realn.bam 7516681142 BAM hg38 53b9d4b4-c7d4-4d9e-b4b2-45b2282c3585 storage1 -C3N-00663.WGS.N C3N-00663 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f2be79d-4860-47bb-b2b9-4f8259146a54/CPT0087810002.WholeGenome.RP-1303.bam 78686804838 BAM hg19 1f2be79d-4860-47bb-b2b9-4f8259146a54 storage1 C3N-00663.WGS.N.hg38 C3N-00663 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6582bf3-3f98-46b1-a149-7997f5009bda/a1aa3a23-f590-48d2-b559-2340afcb3e6c_wgs_gdc_realn.bam 115995719987 BAM hg38 d6582bf3-3f98-46b1-a149-7997f5009bda storage1 -C3N-00663.WGS.T C3N-00663 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a87c0259-852a-488c-981a-1f3b5f1b0845/CPT0087730009.WholeGenome.RP-1303.bam 61829567029 BAM hg19 a87c0259-852a-488c-981a-1f3b5f1b0845 storage1 C3N-00663.WGS.T.hg38 C3N-00663 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65c5d898-e316-4071-87cd-f1341762fd48/cd98c349-930d-4cd6-a2db-5bb1a7f4951b_wgs_gdc_realn.bam 91452960453 BAM hg38 65c5d898-e316-4071-87cd-f1341762fd48 storage1 -C3N-00663.WXS.N C3N-00663 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a24a0411-72bf-42bb-a1d1-5c9eb58beee9/CPT0087810002.WholeExome.RP-1303.bam 43233180120 BAM hg19 a24a0411-72bf-42bb-a1d1-5c9eb58beee9 storage1 -C3N-00663.WXS.T C3N-00663 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/920252da-957b-4e94-b282-a63fc773ef5b/CPT0087730009.WholeExome.RP-1303.bam 32454101537 BAM hg19 920252da-957b-4e94-b282-a63fc773ef5b storage1 C3N-00665.RNA-Seq.chimeric.T.hg38 C3N-00665 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3251b2a4-b1fd-4cd0-a5cb-9953ce08b597/48d1a5e8-481e-4b3f-94ac-6c297f0e3ef5.rna_seq.chimeric.gdc_realn.bam 34990594 BAM hg38 3251b2a4-b1fd-4cd0-a5cb-9953ce08b597 storage1 C3N-00665.RNA-Seq.R1.T C3N-00665 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/949887f9-0e80-4e58-a463-e2f4eca6f344/171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R1_001.fastq.gz 4574550613 FASTQ NA 949887f9-0e80-4e58-a463-e2f4eca6f344 storage1 C3N-00665.RNA-Seq.R2.T C3N-00665 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cdd04b9-24fd-4cd0-adda-92fff85b4f2e/171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R2_001.fastq.gz 4836725837 FASTQ NA 3cdd04b9-24fd-4cd0-adda-92fff85b4f2e storage1 C3N-00665.RNA-Seq.transcriptome.T.hg38 C3N-00665 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4fbbe94-f99a-4dfb-abc3-35971fe83bde/48d1a5e8-481e-4b3f-94ac-6c297f0e3ef5.rna_seq.transcriptome.gdc_realn.bam 10659390306 BAM hg38 f4fbbe94-f99a-4dfb-abc3-35971fe83bde storage1 -C3N-00665.WGS.N C3N-00665 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f8c7efb-9174-46e4-b8b9-0586934226bb/CPT0093440002.WholeGenome.RP-1303.bam 67576983440 BAM hg19 3f8c7efb-9174-46e4-b8b9-0586934226bb storage1 C3N-00665.WGS.N.hg38 C3N-00665 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/394b7faf-cc03-4e59-a36c-01fbfba7449c/847e2c7e-5327-4064-a364-9e8c65bfd949_wgs_gdc_realn.bam 99580079735 BAM hg38 394b7faf-cc03-4e59-a36c-01fbfba7449c storage1 -C3N-00665.WGS.T C3N-00665 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69ceb9c4-4258-4cd9-951e-a96bc888884d/CPT0093360009.WholeGenome.RP-1303.bam 67337583453 BAM hg19 69ceb9c4-4258-4cd9-951e-a96bc888884d storage1 C3N-00665.WGS.T.hg38 C3N-00665 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aabf00cc-4646-4c76-ba85-e71a9918937b/f2365384-0941-41c2-8356-e5cb86183369_wgs_gdc_realn.bam 97209041208 BAM hg38 aabf00cc-4646-4c76-ba85-e71a9918937b storage1 -C3N-00665.WXS.N C3N-00665 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3233ebf-f9d2-419a-a562-63500f31290f/CPT0093440002.WholeExome.RP-1303.bam 32202336964 BAM hg19 b3233ebf-f9d2-419a-a562-63500f31290f storage1 -C3N-00665.WXS.T C3N-00665 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b4a3812-3b88-48ba-b208-c16036cdc7e4/CPT0093360009.WholeExome.RP-1303.bam 57914023552 BAM hg19 8b4a3812-3b88-48ba-b208-c16036cdc7e4 storage1 C3N-00681.RNA-Seq.R1.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182da2bf-ecc4-4df0-b857-d68da45b9a93/210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ NA 182da2bf-ecc4-4df0-b857-d68da45b9a93 storage1 C3N-00681.RNA-Seq.R2.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/670183c6-3c04-4e18-b129-3d104c270b33/210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ NA 670183c6-3c04-4e18-b129-3d104c270b33 storage1 C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f61a341-a3ba-4900-9e2a-4263c82bb97e/d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM hg38 6f61a341-a3ba-4900-9e2a-4263c82bb97e storage1 @@ -6966,12 +6659,8 @@ C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01192.RNA-Seq.R1.T C3N-01192 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8586880b-19f8-43da-a85b-7ffc96dcfe6e/171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R1_001.fastq.gz 4559078143 FASTQ NA 8586880b-19f8-43da-a85b-7ffc96dcfe6e storage1 C3N-01192.RNA-Seq.R2.T C3N-01192 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/400ea065-5905-41ba-86de-b5986720714d/171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R2_001.fastq.gz 5032932202 FASTQ NA 400ea065-5905-41ba-86de-b5986720714d storage1 C3N-01192.RNA-Seq.transcriptome.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b344fe26-5979-4b53-8d6a-1e13540fb7dd/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.transcriptome.gdc_realn.bam 10892346070 BAM hg38 b344fe26-5979-4b53-8d6a-1e13540fb7dd storage1 -C3N-01192.WGS.N C3N-01192 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8316a058-3015-4a6f-858e-7d3958f255ec/CPT0087980002.WholeGenome.RP-1303.bam 69705723979 BAM hg19 8316a058-3015-4a6f-858e-7d3958f255ec storage1 C3N-01192.WGS.N.hg38 C3N-01192 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff0b98e8-93b8-4492-91ee-259293a5571a/300522b0-ac2f-4ec7-a5ae-cd55519df19c_wgs_gdc_realn.bam 102084073930 BAM hg38 ff0b98e8-93b8-4492-91ee-259293a5571a storage1 -C3N-01192.WGS.T C3N-01192 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b796c09-8256-4eae-9ddd-be685b35924d/CPT0087950009.WholeGenome.RP-1303.bam 66980928033 BAM hg19 9b796c09-8256-4eae-9ddd-be685b35924d storage1 C3N-01192.WGS.T.hg38 C3N-01192 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71abf089-0d4a-4f62-9691-f10844c265d1/b4dc9536-147b-46cf-b704-dc9244cb3980_wgs_gdc_realn.bam 99753558206 BAM hg38 71abf089-0d4a-4f62-9691-f10844c265d1 storage1 -C3N-01192.WXS.N C3N-01192 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c99b783-d1ee-40c2-81b4-f6083f05943b/CPT0087980002.WholeExome.RP-1303.bam 55467664484 BAM hg19 2c99b783-d1ee-40c2-81b4-f6083f05943b storage1 -C3N-01192.WXS.T C3N-01192 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1c25fd3-847b-40a1-9f40-d34f29ad3d53/CPT0087950009.WholeExome.RP-1303.bam 48554466558 BAM hg19 e1c25fd3-847b-40a1-9f40-d34f29ad3d53 storage1 C3N-01194.RNA-Seq.R1.A C3N-01194 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8f80524-a45c-47de-9262-48c781488318/180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4284636321 FASTQ NA c8f80524-a45c-47de-9262-48c781488318 storage1 C3N-01194.RNA-Seq.R1.T C3N-01194 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfc915d2-984c-466f-85e0-12a68f0413ad/170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 3917404062 FASTQ NA dfc915d2-984c-466f-85e0-12a68f0413ad storage1 C3N-01194.RNA-Seq.R2.A C3N-01194 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ca5e4b2-d3bf-47b9-893c-35b8caf13fca/180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4679137235 FASTQ NA 5ca5e4b2-d3bf-47b9-893c-35b8caf13fca storage1 @@ -6983,25 +6672,18 @@ C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01196.RNA-Seq.R1.T C3N-01196 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cf704de-fe0f-426b-8067-eece3a94120e/170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ NA 9cf704de-fe0f-426b-8067-eece3a94120e storage1 C3N-01196.RNA-Seq.R2.T C3N-01196 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0149b324-0f53-4425-aed2-1d785545cce6/170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ NA 0149b324-0f53-4425-aed2-1d785545cce6 storage1 C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0735aac-d346-43ba-81c1-4054b7c906c3/1a4dcfe0-7950-4957-ba2d-a52e74c3eac7.rna_seq.transcriptome.gdc_realn.bam 7190041368 BAM hg38 a0735aac-d346-43ba-81c1-4054b7c906c3 storage1 -C3N-01196.WGS.N C3N-01196 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb8193c9-0f40-4226-876c-7b72f711dc20/CPT0078600002.WholeGenome.RP-1303.bam 71018786399 BAM hg19 cb8193c9-0f40-4226-876c-7b72f711dc20 storage1 C3N-01196.WGS.N.hg38 C3N-01196 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f1c0db8-a938-444a-a1b7-d92ead28e401/2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 109344171761 BAM hg38 1f1c0db8-a938-444a-a1b7-d92ead28e401 storage1 -C3N-01196.WGS.T C3N-01196 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/310215da-2316-478f-8fb2-1019b95b06ec/CPT0078580006.WholeGenome.RP-1303.bam 68162180374 BAM hg19 310215da-2316-478f-8fb2-1019b95b06ec storage1 C3N-01196.WGS.T.hg38 C3N-01196 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27/f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 102911297394 BAM hg38 478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27 storage1 -C3N-01196.WXS.N C3N-01196 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2acbdf4b-c9a6-4c95-8fdc-52c519f9530a/CPT0078600002.WholeExome.RP-1303.bam 30617793152 BAM hg19 2acbdf4b-c9a6-4c95-8fdc-52c519f9530a storage1 -C3N-01196.WXS.T C3N-01196 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb79c6b2-9c6b-4219-97e3-414ef4eb9e1b/CPT0078580006.WholeExome.RP-1303.bam 31188011031 BAM hg19 fb79c6b2-9c6b-4219-97e3-414ef4eb9e1b storage1 C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 C3N-01197.RNA-Seq.R1.T C3N-01197 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75e83f5d-ad37-4018-ae11-bc247d76bf0a/170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3932675598 FASTQ NA 75e83f5d-ad37-4018-ae11-bc247d76bf0a storage1 C3N-01197.RNA-Seq.R2.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3746a172-d4af-4f52-9dd9-01e6db58f3d7/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ NA 3746a172-d4af-4f52-9dd9-01e6db58f3d7 storage1 C3N-01197.RNA-Seq.R2.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3746a172-d4af-4f52-9dd9-01e6db58f3d7/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ NA 3746a172-d4af-4f52-9dd9-01e6db58f3d7 storage1 C3N-01197.RNA-Seq.R2.T C3N-01197 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7704b4c6-fc08-4876-9071-7b027ecc807e/170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4335422641 FASTQ NA 7704b4c6-fc08-4876-9071-7b027ecc807e storage1 -C3N-01197.WGS.N C3N-01197 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06bad4e8-1b97-41ad-bbe3-e053c16fca3f/CPT0078500002.WholeGenome.RP-1303.bam 66772005182 BAM hg19 06bad4e8-1b97-41ad-bbe3-e053c16fca3f storage1 C3N-01197.WGS.N.hg38 C3N-01197 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d103cd5-b6ba-499c-b86d-ee90e7722972/ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 101210139062 BAM hg38 8d103cd5-b6ba-499c-b86d-ee90e7722972 storage1 -C3N-01197.WGS.T C3N-01197 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8a24121-4eb7-4d42-8835-62bf38c27b67/CPT0078480013.WholeGenome.RP-1303.bam 78605674127 BAM hg19 c8a24121-4eb7-4d42-8835-62bf38c27b67 storage1 C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69bc2a10-0aee-46d4-8974-e138bea74760/8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 119236219494 BAM hg38 69bc2a10-0aee-46d4-8974-e138bea74760 storage1 C3N-01197.WXS.A C3N-01197 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d74445a1-60a3-4d33-a053-cb9ef300db97/CPT0402600013.WholeExome.RP-1303.bam 17913496431 BAM hg19 d74445a1-60a3-4d33-a053-cb9ef300db97 storage1 C3N-01197.WXS.N C3N-01197 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e853e58-065a-4a19-b3cf-1066f8d7dddb/CPT0078500002.WholeExome.RP-1303.bam 27122734221 BAM hg19 2e853e58-065a-4a19-b3cf-1066f8d7dddb storage1 -C3N-01197.WXS.T C3N-01197 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/742678c4-a327-4aef-be8d-38b26605cb19/CPT0078480013.WholeExome.RP-1303.bam 31119460682 BAM hg19 742678c4-a327-4aef-be8d-38b26605cb19 storage1 C3N-01200.RNA-Seq.R1.A C3N-01200 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3622b01d-1aed-4d4c-bf81-6f3d3208683f/171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R1_001.fastq.gz 3995140615 FASTQ NA 3622b01d-1aed-4d4c-bf81-6f3d3208683f storage1 C3N-01200.RNA-Seq.R1.T C3N-01200 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb2e9eb7-49a1-4810-ad31-58b4411cdd05/170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R1_001.fastq.gz 3917366988 FASTQ NA fb2e9eb7-49a1-4810-ad31-58b4411cdd05 storage1 C3N-01200.RNA-Seq.R1.T.HET_rv0Emw C3N-01200 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30628661-05d5-4fe1-be42-ee30dce69ec0/200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R1_001.fastq.gz 4438109303 FASTQ NA 30628661-05d5-4fe1-be42-ee30dce69ec0 storage1 @@ -7101,12 +6783,8 @@ C3N-01334.RNA-Seq.chimeric.T.hg38 C3N-01334 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01334.RNA-Seq.R1.T C3N-01334 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc957f8-1cd0-4197-96b8-30bd1a5cc776/180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R1_001.fastq.gz 3964104440 FASTQ NA 3cc957f8-1cd0-4197-96b8-30bd1a5cc776 storage1 C3N-01334.RNA-Seq.R2.T C3N-01334 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6823ef4-4fb2-4188-8214-4de92ce913a2/180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R2_001.fastq.gz 4396759449 FASTQ NA a6823ef4-4fb2-4188-8214-4de92ce913a2 storage1 C3N-01334.RNA-Seq.transcriptome.T.hg38 C3N-01334 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/876554f1-7d5f-47d8-9f50-ac4d65f5facc/5df0c6c8-8eba-4338-8d89-b17e7850409e.rna_seq.transcriptome.gdc_realn.bam 8008207859 BAM hg38 876554f1-7d5f-47d8-9f50-ac4d65f5facc storage1 -C3N-01334.WGS.N C3N-01334 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/998a823c-24d7-41ec-865a-62c9ee65a71b/CPT0125250002.WholeGenome.RP-1303.bam 62961118881 BAM hg19 998a823c-24d7-41ec-865a-62c9ee65a71b storage1 C3N-01334.WGS.N.hg38 C3N-01334 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5980d118-12c4-440c-ba3d-3edfa259658a/1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wgs_gdc_realn.bam 90333471413 BAM hg38 5980d118-12c4-440c-ba3d-3edfa259658a storage1 -C3N-01334.WGS.T C3N-01334 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/655943fb-8990-4690-8bd0-1586f06b911e/CPT0125220006.WholeGenome.RP-1303.bam 62455774887 BAM hg19 655943fb-8990-4690-8bd0-1586f06b911e storage1 C3N-01334.WGS.T.hg38 C3N-01334 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d674d610-4fa5-4838-a145-4f60c956c43d/db1b4053-ac2a-4da7-b360-488978fbf6c4_wgs_gdc_realn.bam 92894519288 BAM hg38 d674d610-4fa5-4838-a145-4f60c956c43d storage1 -C3N-01334.WXS.N C3N-01334 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7dfcb865-a511-4589-8533-c8bc5d788102/CPT0125250002.WholeExome.RP-1303.bam 26822439471 BAM hg19 7dfcb865-a511-4589-8533-c8bc5d788102 storage1 -C3N-01334.WXS.T C3N-01334 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b77dd43-97e5-409a-bd45-72c30fba641e/CPT0125220006.WholeExome.RP-1303.bam 36570438445 BAM hg19 8b77dd43-97e5-409a-bd45-72c30fba641e storage1 C3N-01337.RNA-Seq.R1.A C3N-01337 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9/180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 2503193362 FASTQ NA d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9 storage1 C3N-01337.RNA-Seq.R1.T C3N-01337 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20270207-1151-4641-b428-6b42171dd34b/20210723_P2_E1_WB7988-plate2_S49_R1_001.fastq.gz 5846796128 FASTQ NA 20270207-1151-4641-b428-6b42171dd34b storage1 C3N-01337.RNA-Seq.R1.T C3N-01337 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea84dfa7-362e-41bd-af0a-9183260cee41/171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4788972008 FASTQ NA ea84dfa7-362e-41bd-af0a-9183260cee41 storage1 @@ -7181,12 +6859,8 @@ C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01364.RNA-Seq.R1.T C3N-01364 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1a8bc5a-1fee-467d-bd74-2f300eaca110/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R1_001.fastq.gz 4080118644 FASTQ NA d1a8bc5a-1fee-467d-bd74-2f300eaca110 storage1 C3N-01364.RNA-Seq.R2.T C3N-01364 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d374973-7198-49c6-a491-e98ca9a8232c/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R2_001.fastq.gz 4324767117 FASTQ NA 8d374973-7198-49c6-a491-e98ca9a8232c storage1 C3N-01364.RNA-Seq.transcriptome.T.hg38 C3N-01364 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9c26957-61d6-40d8-b44a-babbb4768b13/a0e8a67a-dbd0-48f5-909b-3be648f0b277.rna_seq.transcriptome.gdc_realn.bam 9148519699 BAM hg38 c9c26957-61d6-40d8-b44a-babbb4768b13 storage1 -C3N-01364.WGS.N C3N-01364 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd2bde11-33a6-4e77-b8d5-a0962ecc287a/CPT0093490002.WholeGenome.RP-1303.bam 61440378579 BAM hg19 cd2bde11-33a6-4e77-b8d5-a0962ecc287a storage1 C3N-01364.WGS.N.hg38 C3N-01364 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e78972e-d40d-49c7-9dea-80a2ae300520/49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wgs_gdc_realn.bam 90233355921 BAM hg38 2e78972e-d40d-49c7-9dea-80a2ae300520 storage1 -C3N-01364.WGS.T C3N-01364 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbcb9196-153f-45ed-9918-064f813fabea/CPT0093450009.WholeGenome.RP-1303.bam 62683113569 BAM hg19 cbcb9196-153f-45ed-9918-064f813fabea storage1 C3N-01364.WGS.T.hg38 C3N-01364 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44b98b50-87ea-491b-bd05-5fa6650a8350/5f6180da-9f43-41a4-ac5b-816dd3297285_wgs_gdc_realn.bam 91034187503 BAM hg38 44b98b50-87ea-491b-bd05-5fa6650a8350 storage1 -C3N-01364.WXS.N C3N-01364 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a56dce4b-3468-4126-a23b-156d3a3894ec/CPT0093490002.WholeExome.RP-1303.bam 59543952160 BAM hg19 a56dce4b-3468-4126-a23b-156d3a3894ec storage1 -C3N-01364.WXS.T C3N-01364 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/137a00f2-9c00-4a8c-ac49-ee36b85905ac/CPT0093450009.WholeExome.RP-1303.bam 36944728175 BAM hg19 137a00f2-9c00-4a8c-ac49-ee36b85905ac storage1 C3N-01365.RNA-Seq.R1.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9936d4a4-b553-40fc-9739-16e57a11ecee/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ NA 9936d4a4-b553-40fc-9739-16e57a11ecee storage1 C3N-01365.RNA-Seq.R1.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9936d4a4-b553-40fc-9739-16e57a11ecee/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ NA 9936d4a4-b553-40fc-9739-16e57a11ecee storage1 C3N-01365.RNA-Seq.R2.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10b7380d-90bc-47db-8580-ec64ccc6dea6/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ NA 10b7380d-90bc-47db-8580-ec64ccc6dea6 storage1 @@ -7197,42 +6871,26 @@ C3N-01366.RNA-Seq.chimeric.T.hg38 C3N-01366 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01366.RNA-Seq.R1.T C3N-01366 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2473c3e8-c5b3-4cd7-badc-e7451a85bcd0/171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R1_001.fastq.gz 3842996129 FASTQ NA 2473c3e8-c5b3-4cd7-badc-e7451a85bcd0 storage1 C3N-01366.RNA-Seq.R2.T C3N-01366 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/117c36a0-7e93-4b90-b819-0d8db6787d03/171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R2_001.fastq.gz 4130353029 FASTQ NA 117c36a0-7e93-4b90-b819-0d8db6787d03 storage1 C3N-01366.RNA-Seq.transcriptome.T.hg38 C3N-01366 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f03d2fff-5440-4eb5-b2d5-941cd38e48eb/825b7a02-a331-4c5b-9801-1e1e7c8901ec.rna_seq.transcriptome.gdc_realn.bam 9691013755 BAM hg38 f03d2fff-5440-4eb5-b2d5-941cd38e48eb storage1 -C3N-01366.WGS.N C3N-01366 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fa37f8f-a8ab-49fd-bbf9-baf2fed74d57/CPT0093540002.WholeGenome.RP-1303.bam 68247624433 BAM hg19 4fa37f8f-a8ab-49fd-bbf9-baf2fed74d57 storage1 C3N-01366.WGS.N.hg38 C3N-01366 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64768550-ac2f-4b5c-84ea-37014a8c1af4/dc744f87-3e3b-4eb1-b7de-ab743ef63880_wgs_gdc_realn.bam 101811273944 BAM hg38 64768550-ac2f-4b5c-84ea-37014a8c1af4 storage1 -C3N-01366.WGS.T C3N-01366 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67083540-a965-4bc5-824d-240e220aa788/CPT0093510009.WholeGenome.RP-1303.bam 69760247843 BAM hg19 67083540-a965-4bc5-824d-240e220aa788 storage1 C3N-01366.WGS.T.hg38 C3N-01366 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aedd51d0-330d-4780-b6fc-9ba566274980/bf7d406f-320d-4fc8-ba31-5d5779b11a18_wgs_gdc_realn.bam 104729974826 BAM hg38 aedd51d0-330d-4780-b6fc-9ba566274980 storage1 -C3N-01366.WXS.N C3N-01366 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e3ad518-68b7-448b-8bd0-a07c351a8e87/CPT0093540002.WholeExome.RP-1303.bam 32338666677 BAM hg19 0e3ad518-68b7-448b-8bd0-a07c351a8e87 storage1 -C3N-01366.WXS.T C3N-01366 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dbaa507-8f20-4fef-b71b-b129177ae85f/CPT0093510009.WholeExome.RP-1303.bam 35753489535 BAM hg19 5dbaa507-8f20-4fef-b71b-b129177ae85f storage1 C3N-01367.RNA-Seq.chimeric.T.hg38 C3N-01367 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ff584c5-7b0c-4bc7-ad98-0e20eec1d69b/1ae50000-ca3d-4923-a7ea-f5ed3afdd5dd.rna_seq.chimeric.gdc_realn.bam 30847899 BAM hg38 2ff584c5-7b0c-4bc7-ad98-0e20eec1d69b storage1 C3N-01367.RNA-Seq.R1.T C3N-01367 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/922258c7-88bc-4d03-8018-5070f9061da4/171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R1_001.fastq.gz 3870494330 FASTQ NA 922258c7-88bc-4d03-8018-5070f9061da4 storage1 C3N-01367.RNA-Seq.R2.T C3N-01367 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/884c747b-7ece-4152-89ed-018009adab0f/171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R2_001.fastq.gz 4185337784 FASTQ NA 884c747b-7ece-4152-89ed-018009adab0f storage1 C3N-01367.RNA-Seq.transcriptome.T.hg38 C3N-01367 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29cc5497-7cd4-4ada-b3a3-db6b5cd74ac7/1ae50000-ca3d-4923-a7ea-f5ed3afdd5dd.rna_seq.transcriptome.gdc_realn.bam 8120483710 BAM hg38 29cc5497-7cd4-4ada-b3a3-db6b5cd74ac7 storage1 -C3N-01367.WGS.N C3N-01367 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c41ed2c-df2c-4cb8-b485-91f91839a69e/CPT0093570002.WholeGenome.RP-1303.bam 77949245810 BAM hg19 1c41ed2c-df2c-4cb8-b485-91f91839a69e storage1 C3N-01367.WGS.N.hg38 C3N-01367 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd8825ce-40b7-4842-b8f5-227d168734d8/48c74137-31a5-45dc-a63f-026614b79af0_wgs_gdc_realn.bam 116424006952 BAM hg38 cd8825ce-40b7-4842-b8f5-227d168734d8 storage1 -C3N-01367.WGS.T C3N-01367 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cec9a38a-8a61-433a-a8db-32ee55be862e/CPT0093550012.WholeGenome.RP-1303.bam 59568704641 BAM hg19 cec9a38a-8a61-433a-a8db-32ee55be862e storage1 C3N-01367.WGS.T.hg38 C3N-01367 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc340836-b124-4f46-b854-676386877c08/cf8b37ba-cabe-4e3b-9c0d-086725757e17_wgs_gdc_realn.bam 86693276819 BAM hg38 fc340836-b124-4f46-b854-676386877c08 storage1 -C3N-01367.WXS.N C3N-01367 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac02dca8-2b07-4a9a-91ab-c6be9ec1c43f/CPT0093570002.WholeExome.RP-1303.bam 61387633105 BAM hg19 ac02dca8-2b07-4a9a-91ab-c6be9ec1c43f storage1 -C3N-01367.WXS.T C3N-01367 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1034e18a-de73-4000-bc07-771f83086ff3/CPT0093550012.WholeExome.RP-1303.bam 33246788530 BAM hg19 1034e18a-de73-4000-bc07-771f83086ff3 storage1 C3N-01368.RNA-Seq.chimeric.T.hg38 C3N-01368 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21ab4772-06e9-4fca-b1ac-0df79814ba2e/cb31907f-5c8e-44e6-995e-ac2e1ee72dd0.rna_seq.chimeric.gdc_realn.bam 41738483 BAM hg38 21ab4772-06e9-4fca-b1ac-0df79814ba2e storage1 C3N-01368.RNA-Seq.R1.T C3N-01368 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f630fa32-ae23-4686-a8ae-a15d6db483cd/171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R1_001.fastq.gz 4328230752 FASTQ NA f630fa32-ae23-4686-a8ae-a15d6db483cd storage1 C3N-01368.RNA-Seq.R2.T C3N-01368 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46c53c9c-5e19-4deb-ac15-14e198cb6031/171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R2_001.fastq.gz 4620982138 FASTQ NA 46c53c9c-5e19-4deb-ac15-14e198cb6031 storage1 C3N-01368.RNA-Seq.transcriptome.T.hg38 C3N-01368 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa65181c-eeb9-4f7a-8a5a-2ae7c2251ecf/cb31907f-5c8e-44e6-995e-ac2e1ee72dd0.rna_seq.transcriptome.gdc_realn.bam 9251255296 BAM hg38 fa65181c-eeb9-4f7a-8a5a-2ae7c2251ecf storage1 -C3N-01368.WGS.N C3N-01368 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f02a74f7-a975-43d2-8466-61e3464fec10/CPT0093620002.WholeGenome.RP-1303.bam 66354102976 BAM hg19 f02a74f7-a975-43d2-8466-61e3464fec10 storage1 C3N-01368.WGS.N.hg38 C3N-01368 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac39fb69-64aa-44e4-b308-e41df3a974eb/6d5370f7-a363-4450-bf90-ade4abfee224_wgs_gdc_realn.bam 98468146967 BAM hg38 ac39fb69-64aa-44e4-b308-e41df3a974eb storage1 -C3N-01368.WGS.T C3N-01368 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/122929ea-36ce-4e70-aa5a-6e02eb0c0205/CPT0093590009.WholeGenome.RP-1303.bam 56590210185 BAM hg19 122929ea-36ce-4e70-aa5a-6e02eb0c0205 storage1 C3N-01368.WGS.T.hg38 C3N-01368 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf41df48-ba05-4af3-8835-3c17bbd5236e/c2ed3978-37c5-4c6b-b61e-91ab4856698a_wgs_gdc_realn.bam 83200402994 BAM hg38 bf41df48-ba05-4af3-8835-3c17bbd5236e storage1 -C3N-01368.WXS.N C3N-01368 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e42a39c-9fc4-402e-bff6-213d72ac764b/CPT0093620002.WholeExome.RP-1303.bam 37977814163 BAM hg19 0e42a39c-9fc4-402e-bff6-213d72ac764b storage1 -C3N-01368.WXS.T C3N-01368 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd6d1d94-86c8-41ee-a889-0af85f093810/CPT0093590009.WholeExome.RP-1303.bam 29671786944 BAM hg19 bd6d1d94-86c8-41ee-a889-0af85f093810 storage1 C3N-01369.RNA-Seq.chimeric.T.hg38 C3N-01369 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65dfe97d-b808-4523-ab4c-92cc4567e81a/413052c7-0d49-4515-be9c-75492747b3ee.rna_seq.chimeric.gdc_realn.bam 130490485 BAM hg38 65dfe97d-b808-4523-ab4c-92cc4567e81a storage1 C3N-01369.RNA-Seq.R1.T C3N-01369 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ef18597-3dc6-4368-9843-ca003ca75acf/180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 3010240413 FASTQ NA 3ef18597-3dc6-4368-9843-ca003ca75acf storage1 C3N-01369.RNA-Seq.R2.T C3N-01369 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e35295e-8294-4252-9d2b-be82bacc86ba/180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 3290785428 FASTQ NA 3e35295e-8294-4252-9d2b-be82bacc86ba storage1 C3N-01369.RNA-Seq.transcriptome.T.hg38 C3N-01369 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3d24fab-be98-48e5-8302-361c596ded27/413052c7-0d49-4515-be9c-75492747b3ee.rna_seq.transcriptome.gdc_realn.bam 7764716621 BAM hg38 a3d24fab-be98-48e5-8302-361c596ded27 storage1 -C3N-01369.WGS.N C3N-01369 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c17f1af8-b88f-427a-8c11-d2fdc267ff83/CPT0162040002.WholeGenome.RP-1303.bam 63101405834 BAM hg19 c17f1af8-b88f-427a-8c11-d2fdc267ff83 storage1 C3N-01369.WGS.N.hg38 C3N-01369 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00a6c8d6-d21a-47d0-860b-af54979354bf/72e8c076-6bc4-4274-b90c-188820d472a1_wgs_gdc_realn.bam 92159766724 BAM hg38 00a6c8d6-d21a-47d0-860b-af54979354bf storage1 -C3N-01369.WGS.T C3N-01369 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ca8ece8-2ec1-4c98-a705-85d47cf7e70f/CPT0162020006.WholeGenome.RP-1303.bam 64549937121 BAM hg19 6ca8ece8-2ec1-4c98-a705-85d47cf7e70f storage1 C3N-01369.WGS.T.hg38 C3N-01369 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b65a532f-36d7-43e2-b46d-dc4f9d6ebade/b97f843a-68a7-430f-b277-93c55b7f4b76_wgs_gdc_realn.bam 93697537744 BAM hg38 b65a532f-36d7-43e2-b46d-dc4f9d6ebade storage1 -C3N-01369.WXS.N C3N-01369 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51ebf434-8a15-4a7c-92d0-e41f92f9f5c2/CPT0162040002.WholeExome.RP-1303.bam 28457151997 BAM hg19 51ebf434-8a15-4a7c-92d0-e41f92f9f5c2 storage1 -C3N-01369.WXS.T C3N-01369 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b020ef3e-ebf5-4a61-bfd6-b9fa78bd3455/CPT0162020006.WholeExome.RP-1303.bam 18141477488 BAM hg19 b020ef3e-ebf5-4a61-bfd6-b9fa78bd3455 storage1 C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08ae1a2f-7690-4442-9540-24453fcbf4da/298b81f7-eb41-43cd-a438-1c9c168ba4e4.rna_seq.genomic.gdc_realn.bam 7815912943 BAM hg38 08ae1a2f-7690-4442-9540-24453fcbf4da storage1 C3N-01375.RNA-Seq.R1.T C3N-01375 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d647436f-5e41-4bef-a100-5c5cf00a282d/171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R1_001.fastq.gz 4079792609 FASTQ NA d647436f-5e41-4bef-a100-5c5cf00a282d storage1 C3N-01375.RNA-Seq.R2.T C3N-01375 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33825407-09bb-4634-9037-685c0f893fc2/171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R2_001.fastq.gz 4393615083 FASTQ NA 33825407-09bb-4634-9037-685c0f893fc2 storage1 @@ -7399,12 +7057,8 @@ C3N-01505.RNA-Seq.chimeric.T.hg38 C3N-01505 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01505.RNA-Seq.R1.T C3N-01505 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae912b64-4bdb-4a13-8b73-87bb12c0b91d/171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R1_001.fastq.gz 4394536669 FASTQ NA ae912b64-4bdb-4a13-8b73-87bb12c0b91d storage1 C3N-01505.RNA-Seq.R2.T C3N-01505 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e6967824-e7b5-4e93-b0d9-d83a178cb330/171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R2_001.fastq.gz 4755808924 FASTQ NA e6967824-e7b5-4e93-b0d9-d83a178cb330 storage1 C3N-01505.RNA-Seq.transcriptome.T.hg38 C3N-01505 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c9d3a0d-f995-4a56-8e5d-c148e72ec95a/a4998e9e-e3f9-4ba3-9cfd-fd3f67f68382.rna_seq.transcriptome.gdc_realn.bam 9872289243 BAM hg38 8c9d3a0d-f995-4a56-8e5d-c148e72ec95a storage1 -C3N-01505.WGS.N C3N-01505 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ef1a4d2-22e3-439a-ac88-8d8d98417c92/CPT0091300002.WholeGenome.RP-1303.bam 70461521289 BAM hg19 2ef1a4d2-22e3-439a-ac88-8d8d98417c92 storage1 C3N-01505.WGS.N.hg38 C3N-01505 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c49660d-60b1-40a4-9669-3aabc6c5ced2/087bdb48-d63e-46d0-96d1-1915276d5fb6_wgs_gdc_realn.bam 103578718945 BAM hg38 4c49660d-60b1-40a4-9669-3aabc6c5ced2 storage1 -C3N-01505.WGS.T C3N-01505 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3fecf492-3f49-4863-82c4-fe0e1f3e99ac/CPT0089150009.WholeGenome.RP-1303.bam 76929538614 BAM hg19 3fecf492-3f49-4863-82c4-fe0e1f3e99ac storage1 C3N-01505.WGS.T.hg38 C3N-01505 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46030a49-3f35-442f-865c-2d7f298344ee/c51f48fb-4a71-430b-8492-cecd49c158d4_wgs_gdc_realn.bam 112049041549 BAM hg38 46030a49-3f35-442f-865c-2d7f298344ee storage1 -C3N-01505.WXS.N C3N-01505 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5074c7bc-8589-444f-b3dd-62836a7be360/CPT0091300002.WholeExome.RP-1303.bam 33488019775 BAM hg19 5074c7bc-8589-444f-b3dd-62836a7be360 storage1 -C3N-01505.WXS.T C3N-01505 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc3e327f-d888-441f-a8b4-c12ae3259554/CPT0089150009.WholeExome.RP-1303.bam 43202073680 BAM hg19 bc3e327f-d888-441f-a8b4-c12ae3259554 storage1 C3N-01510.RNA-Seq.R1.T C3N-01510 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c598e26-c32b-4405-af2a-c560941fb81a/170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3423529925 FASTQ NA 9c598e26-c32b-4405-af2a-c560941fb81a storage1 C3N-01510.RNA-Seq.R1.T C3N-01510 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e197a317-1251-4521-ad3e-f646cb1983c7/20210714_P1_A4_WB7988_plate1_S4_R1_001.fastq.gz 3792530392 FASTQ NA e197a317-1251-4521-ad3e-f646cb1983c7 storage1 C3N-01510.RNA-Seq.R2.T C3N-01510 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/086afb47-3e44-4075-900f-c9efeb622959/170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 3668937274 FASTQ NA 086afb47-3e44-4075-900f-c9efeb622959 storage1 @@ -7415,32 +7069,20 @@ C3N-01515.RNA-Seq.chimeric.T.hg38 C3N-01515 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01515.RNA-Seq.R1.T C3N-01515 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4af57b23-c496-487d-868a-0c09c5e20ea4/171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R1_001.fastq.gz 3931183389 FASTQ NA 4af57b23-c496-487d-868a-0c09c5e20ea4 storage1 C3N-01515.RNA-Seq.R2.T C3N-01515 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da0a144a-f03c-46e9-b35c-14b0b1a9a40c/171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R2_001.fastq.gz 4328111545 FASTQ NA da0a144a-f03c-46e9-b35c-14b0b1a9a40c storage1 C3N-01515.RNA-Seq.transcriptome.T.hg38 C3N-01515 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ef0e5e7-ffa5-47c6-9419-11fc35721697/3eca3ff3-8621-4e8b-9a74-074e23c5f755.rna_seq.transcriptome.gdc_realn.bam 9024936082 BAM hg38 8ef0e5e7-ffa5-47c6-9419-11fc35721697 storage1 -C3N-01515.WGS.N.ADNA_kPL1jE C3N-01515 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4755647c-2207-4dca-9a9c-6fe483da66c5/CPT0080730002.WholeGenome.RP-1303.bam 52207974955 BAM hg19 4755647c-2207-4dca-9a9c-6fe483da66c5 storage1 C3N-01515.WGS.N.ADNA_kPL1jE.hg38 C3N-01515 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f97f390b-0bb3-499c-b6bd-00b1afce849b/474dfea4-f2db-44d5-9f00-98c85f07f20b_wgs_gdc_realn.bam 75868489857 BAM hg38 f97f390b-0bb3-499c-b6bd-00b1afce849b storage1 -C3N-01515.WGS.T C3N-01515 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/26a06e1a-93b6-4f62-b833-c306df9a077c/CPT0079790009.WholeGenome.RP-1303.bam 63947622118 BAM hg19 26a06e1a-93b6-4f62-b833-c306df9a077c storage1 C3N-01515.WGS.T.hg38 C3N-01515 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a677c0b-d4b6-48c3-8cb1-f0450487c8e1/d4205a17-5d31-4f86-9a43-4631df1263ab_wgs_gdc_realn.bam 94688322512 BAM hg38 0a677c0b-d4b6-48c3-8cb1-f0450487c8e1 storage1 -C3N-01515.WXS.N.ADNA_kPL1jE C3N-01515 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f2264d8-4724-47d2-8dce-5ffbfeacbc29/CPT0080730002.WholeExome.RP-1303.bam 30433178668 BAM hg19 3f2264d8-4724-47d2-8dce-5ffbfeacbc29 storage1 -C3N-01515.WXS.T C3N-01515 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6711ebe4-8aee-4b9a-9343-8b808ef2f55d/CPT0079790009.WholeExome.RP-1303.bam 37935476804 BAM hg19 6711ebe4-8aee-4b9a-9343-8b808ef2f55d storage1 C3N-01517.RNA-Seq.chimeric.T.hg38 C3N-01517 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c669f616-6df5-4d08-8a18-ec83b0d7e5b3/f36cbc5e-efc0-4f59-9297-72aacc496954.rna_seq.chimeric.gdc_realn.bam 27442692 BAM hg38 c669f616-6df5-4d08-8a18-ec83b0d7e5b3 storage1 C3N-01517.RNA-Seq.R1.T C3N-01517 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a90c04b-6626-4980-82b7-ecbd0efbbedf/180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3618364620 FASTQ NA 6a90c04b-6626-4980-82b7-ecbd0efbbedf storage1 C3N-01517.RNA-Seq.R2.T C3N-01517 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0cad2950-450a-41ad-9c84-42c8a152b18d/180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3779835090 FASTQ NA 0cad2950-450a-41ad-9c84-42c8a152b18d storage1 C3N-01517.RNA-Seq.transcriptome.T.hg38 C3N-01517 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e8bf8fb-c97e-410d-83df-69e7aba90292/f36cbc5e-efc0-4f59-9297-72aacc496954.rna_seq.transcriptome.gdc_realn.bam 8386397007 BAM hg38 6e8bf8fb-c97e-410d-83df-69e7aba90292 storage1 -C3N-01517.WGS.N C3N-01517 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a5f9098-6a49-4b60-be2d-2e2b86d1f208/CPT0167590002.WholeGenome.RP-1303.bam 66236518222 BAM hg19 8a5f9098-6a49-4b60-be2d-2e2b86d1f208 storage1 C3N-01517.WGS.N.hg38 C3N-01517 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99114da3-f483-48a9-bdad-c734fa942f52/c5532f02-56c1-4f58-8b21-238146948cf5_wgs_gdc_realn.bam 95893216700 BAM hg38 99114da3-f483-48a9-bdad-c734fa942f52 storage1 -C3N-01517.WGS.T C3N-01517 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ec6fa98-38f1-4f9b-8d1a-44c17497dc1c/CPT0167530006.WholeGenome.RP-1303.bam 52528939852 BAM hg19 9ec6fa98-38f1-4f9b-8d1a-44c17497dc1c storage1 C3N-01517.WGS.T.hg38 C3N-01517 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/693f85ac-183b-4e68-817e-e2c16c0b874b/17b3d2e1-0d12-438c-88ec-a8e7acf2f565_wgs_gdc_realn.bam 77834799761 BAM hg38 693f85ac-183b-4e68-817e-e2c16c0b874b storage1 -C3N-01517.WXS.N C3N-01517 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ea63211-d49f-4de4-ae5f-78b5aaba5791/CPT0167590002.WholeExome.RP-1303.bam 26810182420 BAM hg19 6ea63211-d49f-4de4-ae5f-78b5aaba5791 storage1 -C3N-01517.WXS.T C3N-01517 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dedabfd7-8876-4390-95fb-88641d141e20/CPT0167530006.WholeExome.RP-1303.bam 28507736551 BAM hg19 dedabfd7-8876-4390-95fb-88641d141e20 storage1 C3N-01518.RNA-Seq.chimeric.T.hg38 C3N-01518 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eca6f561-422b-4fb2-9406-72dc4c61a1c1/2b172463-876d-4f5c-abdf-136d461af026.rna_seq.chimeric.gdc_realn.bam 35670126 BAM hg38 eca6f561-422b-4fb2-9406-72dc4c61a1c1 storage1 C3N-01518.RNA-Seq.R1.T C3N-01518 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2aafa3a-4775-467c-80bd-ab1e0fb066cd/180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4361775821 FASTQ NA b2aafa3a-4775-467c-80bd-ab1e0fb066cd storage1 C3N-01518.RNA-Seq.R2.T C3N-01518 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/172af382-b92b-46ec-a3a0-e64df197f327/180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4673953394 FASTQ NA 172af382-b92b-46ec-a3a0-e64df197f327 storage1 C3N-01518.RNA-Seq.transcriptome.T.hg38 C3N-01518 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b436fbc0-e822-4ec9-94f0-19d4fa5cfef9/2b172463-876d-4f5c-abdf-136d461af026.rna_seq.transcriptome.gdc_realn.bam 10536762091 BAM hg38 b436fbc0-e822-4ec9-94f0-19d4fa5cfef9 storage1 -C3N-01518.WGS.N C3N-01518 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37fc6d5e-dd8d-4455-9b59-79bc87e2560c/CPT0167700002.WholeGenome.RP-1303.bam 61669542373 BAM hg19 37fc6d5e-dd8d-4455-9b59-79bc87e2560c storage1 C3N-01518.WGS.N.hg38 C3N-01518 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94e28d29-60d0-4731-9cc1-a406c71c384d/c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wgs_gdc_realn.bam 90499823103 BAM hg38 94e28d29-60d0-4731-9cc1-a406c71c384d storage1 -C3N-01518.WGS.T C3N-01518 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc5bd435-771c-44ce-8d4a-7163ba815452/CPT0167640006.WholeGenome.RP-1303.bam 64171774463 BAM hg19 cc5bd435-771c-44ce-8d4a-7163ba815452 storage1 C3N-01518.WGS.T.hg38 C3N-01518 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254d09e0-182a-492d-934c-764c730d57a8/9ea35a6a-671b-47cc-95fa-53b5f461bc11_wgs_gdc_realn.bam 93619406656 BAM hg38 254d09e0-182a-492d-934c-764c730d57a8 storage1 -C3N-01518.WXS.N C3N-01518 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6658ac2d-9ec8-4a54-aadc-6710fd4ce32e/CPT0167700002.WholeExome.RP-1303.bam 21593910203 BAM hg19 6658ac2d-9ec8-4a54-aadc-6710fd4ce32e storage1 -C3N-01518.WXS.T C3N-01518 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e22e367a-73a6-4d5a-abce-9fd2c6539727/CPT0167640006.WholeExome.RP-1303.bam 30316298337 BAM hg19 e22e367a-73a6-4d5a-abce-9fd2c6539727 storage1 C3N-01520.RNA-Seq.R1.T C3N-01520 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c4ae450-999f-451c-a337-9d2065d27a6a/20210714_P1_A5_WB7988_plate1_S5_R1_001.fastq.gz 9890179819 FASTQ NA 0c4ae450-999f-451c-a337-9d2065d27a6a storage1 C3N-01520.RNA-Seq.R1.T C3N-01520 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a43b1b15-3b59-4e11-b589-8d89b7e63209/170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R1_001.fastq.gz 4667458627 FASTQ NA a43b1b15-3b59-4e11-b589-8d89b7e63209 storage1 C3N-01520.RNA-Seq.R2.T C3N-01520 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3135f8c-5c50-41a8-ae39-a427c93a993f/170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R2_001.fastq.gz 5031406044 FASTQ NA b3135f8c-5c50-41a8-ae39-a427c93a993f storage1 @@ -7737,12 +7379,8 @@ C3N-01798.RNA-Seq.chimeric.T.hg38 C3N-01798 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01798.RNA-Seq.R1.T C3N-01798 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/005e5a7c-4809-472d-8819-a25f7833a631/180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 4180544485 FASTQ NA 005e5a7c-4809-472d-8819-a25f7833a631 storage1 C3N-01798.RNA-Seq.R2.T C3N-01798 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbf5b3a8-d267-4999-8a95-583d264a55d8/180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4540740441 FASTQ NA bbf5b3a8-d267-4999-8a95-583d264a55d8 storage1 C3N-01798.RNA-Seq.transcriptome.T.hg38 C3N-01798 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca6c0ada-86f7-44ef-a0e0-a1ba0bea4972/ea4e4620-f51f-4725-bc5e-1fd95b55f774.rna_seq.transcriptome.gdc_realn.bam 9770218745 BAM hg38 ca6c0ada-86f7-44ef-a0e0-a1ba0bea4972 storage1 -C3N-01798.WGS.N C3N-01798 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/842ab574-e778-41d8-9999-5f5bdbf239dc/CPT0167810002.WholeGenome.RP-1303.bam 67516152886 BAM hg19 842ab574-e778-41d8-9999-5f5bdbf239dc storage1 C3N-01798.WGS.N.hg38 C3N-01798 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eabb8aaa-0339-4d65-828a-4c144da9442d/3fe573bd-7595-4c87-8006-ae55bfb46f6d_wgs_gdc_realn.bam 97251429797 BAM hg38 eabb8aaa-0339-4d65-828a-4c144da9442d storage1 -C3N-01798.WGS.T C3N-01798 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ec21406-e51f-4958-a0aa-583cd64a81d2/CPT0167750007.WholeGenome.RP-1303.bam 67719339828 BAM hg19 0ec21406-e51f-4958-a0aa-583cd64a81d2 storage1 C3N-01798.WGS.T.hg38 C3N-01798 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0f9efa7-91ee-4fb1-b03a-5472c3eb6957/6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wgs_gdc_realn.bam 99552056200 BAM hg38 b0f9efa7-91ee-4fb1-b03a-5472c3eb6957 storage1 -C3N-01798.WXS.N C3N-01798 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1acc44e-f580-46a3-b5f9-41bd4b323a43/CPT0167810002.WholeExome.RP-1303.bam 23810090159 BAM hg19 a1acc44e-f580-46a3-b5f9-41bd4b323a43 storage1 -C3N-01798.WXS.T C3N-01798 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5af3f567-b24e-4751-9348-df114ca852c2/CPT0167750007.WholeExome.RP-1303.bam 20526333458 BAM hg19 5af3f567-b24e-4751-9348-df114ca852c2 storage1 C3N-01799.RNA-Seq.R1.A C3N-01799 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c879f0f-6ff0-4ec4-a046-e7dbfae29568/171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4265498706 FASTQ NA 8c879f0f-6ff0-4ec4-a046-e7dbfae29568 storage1 C3N-01799.RNA-Seq.R1.T C3N-01799 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e828388-091a-4362-a141-d6849d21224b/171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R1_001.fastq.gz 4278461848 FASTQ NA 2e828388-091a-4362-a141-d6849d21224b storage1 C3N-01799.RNA-Seq.R2.A C3N-01799 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84d28597-e5a3-45b9-84cc-7b365728175a/171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4393858109 FASTQ NA 84d28597-e5a3-45b9-84cc-7b365728175a storage1 @@ -7780,42 +7418,26 @@ C3N-01814.RNA-Seq.chimeric.T.hg38 C3N-01814 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01814.RNA-Seq.R1.T C3N-01814 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e1afdd8-fa3d-4cd2-a8f9-1b1206045082/180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3257766189 FASTQ NA 6e1afdd8-fa3d-4cd2-a8f9-1b1206045082 storage1 C3N-01814.RNA-Seq.R2.T C3N-01814 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf1337a9-d5ba-4ed0-a2d3-851e9dd52394/180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 3528721336 FASTQ NA bf1337a9-d5ba-4ed0-a2d3-851e9dd52394 storage1 C3N-01814.RNA-Seq.transcriptome.T.hg38 C3N-01814 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bfbfd59-0180-43d6-bc44-88095b79213c/ecc7fef4-78d0-4900-8fb0-3216b60ec1be.rna_seq.transcriptome.gdc_realn.bam 7765286060 BAM hg38 3bfbfd59-0180-43d6-bc44-88095b79213c storage1 -C3N-01814.WGS.N C3N-01814 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f71568a-9f40-4fc8-9e40-4792ea5434e4/CPT0167920004.WholeGenome.RP-1303.bam 53609130596 BAM hg19 6f71568a-9f40-4fc8-9e40-4792ea5434e4 storage1 C3N-01814.WGS.N.hg38 C3N-01814 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7f7509e-0375-4e1c-a22c-b5ba92fa02cd/05e1c388-5dbe-44bd-8309-474ce6854f2a_wgs_gdc_realn.bam 76750989332 BAM hg38 e7f7509e-0375-4e1c-a22c-b5ba92fa02cd storage1 -C3N-01814.WGS.T C3N-01814 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/419840c0-0d43-4a90-820d-b7fc05c71d1d/CPT0167860007.WholeGenome.RP-1303.bam 58970002690 BAM hg19 419840c0-0d43-4a90-820d-b7fc05c71d1d storage1 C3N-01814.WGS.T.hg38 C3N-01814 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50aea80d-b1ca-4f31-b402-4df5b9474d46/89c71c22-206b-4f62-b69e-093b180053e2_wgs_gdc_realn.bam 87522260665 BAM hg38 50aea80d-b1ca-4f31-b402-4df5b9474d46 storage1 -C3N-01814.WXS.N C3N-01814 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be118832-2b34-4991-bd03-a1a24f2cd429/CPT0167920004.WholeExome.RP-1303.bam 28538450595 BAM hg19 be118832-2b34-4991-bd03-a1a24f2cd429 storage1 -C3N-01814.WXS.T C3N-01814 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2f9f2af-b739-4b51-8f47-8ccb0469ebf3/CPT0167860007.WholeExome.RP-1303.bam 26372291681 BAM hg19 e2f9f2af-b739-4b51-8f47-8ccb0469ebf3 storage1 C3N-01815.RNA-Seq.chimeric.T.hg38 C3N-01815 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2972b66-1492-4e9c-8759-82b0627a602a/483a0839-2b99-420d-94b0-e8aa7a089737.rna_seq.chimeric.gdc_realn.bam 31126172 BAM hg38 f2972b66-1492-4e9c-8759-82b0627a602a storage1 C3N-01815.RNA-Seq.R1.T C3N-01815 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44da4b86-b09e-49fc-a36a-e2651a289532/180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 4365117694 FASTQ NA 44da4b86-b09e-49fc-a36a-e2651a289532 storage1 C3N-01815.RNA-Seq.R2.T C3N-01815 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e0cc165-8e13-4d78-949d-51cd14172790/180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4718126134 FASTQ NA 4e0cc165-8e13-4d78-949d-51cd14172790 storage1 C3N-01815.RNA-Seq.transcriptome.T.hg38 C3N-01815 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ee76b8c-9058-4d1c-9c80-9c3eb72cfd29/483a0839-2b99-420d-94b0-e8aa7a089737.rna_seq.transcriptome.gdc_realn.bam 10676308743 BAM hg38 0ee76b8c-9058-4d1c-9c80-9c3eb72cfd29 storage1 -C3N-01815.WGS.N C3N-01815 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef61a326-08b5-435b-b40f-6d5b25c5fd95/CPT0168030004.WholeGenome.RP-1303.bam 58495170426 BAM hg19 ef61a326-08b5-435b-b40f-6d5b25c5fd95 storage1 C3N-01815.WGS.N.hg38 C3N-01815 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3871bd67-8f7f-4779-836f-244104dcfd7d/f3005199-2091-4c0e-9eb7-003fc235563b_wgs_gdc_realn.bam 85488812992 BAM hg38 3871bd67-8f7f-4779-836f-244104dcfd7d storage1 -C3N-01815.WGS.T C3N-01815 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1674650c-f516-4593-bb34-f6c363e3ee5c/CPT0167970006.WholeGenome.RP-1303.bam 55488853216 BAM hg19 1674650c-f516-4593-bb34-f6c363e3ee5c storage1 C3N-01815.WGS.T.hg38 C3N-01815 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d597492d-0529-40e6-8ab6-b1899eca94c0/25a378f9-10f1-4864-b062-ef5d66d0c06b_wgs_gdc_realn.bam 82315464227 BAM hg38 d597492d-0529-40e6-8ab6-b1899eca94c0 storage1 -C3N-01815.WXS.N C3N-01815 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/851ff1e7-7d35-42e3-a003-943009dae111/CPT0168030004.WholeExome.RP-1303.bam 37714522298 BAM hg19 851ff1e7-7d35-42e3-a003-943009dae111 storage1 -C3N-01815.WXS.T C3N-01815 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1bcbab3b-580a-4faa-b109-c8da4c317c91/CPT0167970006.WholeExome.RP-1303.bam 29110103979 BAM hg19 1bcbab3b-580a-4faa-b109-c8da4c317c91 storage1 C3N-01816.RNA-Seq.chimeric.T.hg38 C3N-01816 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5edeefdd-ffa4-4754-acb9-14aea1388ae4/10763311-cf6a-47d9-9777-39867a9ffd00.rna_seq.chimeric.gdc_realn.bam 29200017 BAM hg38 5edeefdd-ffa4-4754-acb9-14aea1388ae4 storage1 C3N-01816.RNA-Seq.R1.T C3N-01816 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4c2e7c6-bb6b-485e-8d1e-08fe07af549c/180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4266443871 FASTQ NA d4c2e7c6-bb6b-485e-8d1e-08fe07af549c storage1 C3N-01816.RNA-Seq.R2.T C3N-01816 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c37234b3-f608-4174-a9fd-a03511073262/180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4629196221 FASTQ NA c37234b3-f608-4174-a9fd-a03511073262 storage1 C3N-01816.RNA-Seq.transcriptome.T.hg38 C3N-01816 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f01eeaa-6b83-47f2-a3c8-de4d66a1d273/10763311-cf6a-47d9-9777-39867a9ffd00.rna_seq.transcriptome.gdc_realn.bam 11300019868 BAM hg38 6f01eeaa-6b83-47f2-a3c8-de4d66a1d273 storage1 -C3N-01816.WGS.N C3N-01816 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0301404e-c1d2-44f0-a649-ae43d93119e1/CPT0168120002.WholeGenome.RP-1303.bam 62511736580 BAM hg19 0301404e-c1d2-44f0-a649-ae43d93119e1 storage1 C3N-01816.WGS.N.hg38 C3N-01816 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96df1f35-0652-480a-90cf-9b4e184b5fa3/0582feca-5f76-4ca8-99a1-2183174f62a9_wgs_gdc_realn.bam 91027023070 BAM hg38 96df1f35-0652-480a-90cf-9b4e184b5fa3 storage1 -C3N-01816.WGS.T C3N-01816 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c33aa02f-33e0-45db-97a8-85b741b55b51/CPT0168080006.WholeGenome.RP-1303.bam 56381322083 BAM hg19 c33aa02f-33e0-45db-97a8-85b741b55b51 storage1 C3N-01816.WGS.T.hg38 C3N-01816 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69488b60-9ff2-4702-bc91-b13dea8a99c4/1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wgs_gdc_realn.bam 81855660238 BAM hg38 69488b60-9ff2-4702-bc91-b13dea8a99c4 storage1 -C3N-01816.WXS.N C3N-01816 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90aa4b6b-d831-44b7-9718-ccd6db62b930/CPT0168120002.WholeExome.RP-1303.bam 27771808577 BAM hg19 90aa4b6b-d831-44b7-9718-ccd6db62b930 storage1 -C3N-01816.WXS.T C3N-01816 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db517266-de6d-4709-924d-0fe55c20fdcc/CPT0168080006.WholeExome.RP-1303.bam 21121946020 BAM hg19 db517266-de6d-4709-924d-0fe55c20fdcc storage1 C3N-01818.RNA-Seq.chimeric.T.hg38 C3N-01818 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1637997b-b847-41f2-a426-efec01bec40c/64db4d73-f3fb-4997-93f8-71a98cd6b732.rna_seq.chimeric.gdc_realn.bam 28882035 BAM hg38 1637997b-b847-41f2-a426-efec01bec40c storage1 C3N-01818.RNA-Seq.R1.T C3N-01818 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0e38c05-ac09-4c1c-bb1d-b548599b093b/180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3317624857 FASTQ NA b0e38c05-ac09-4c1c-bb1d-b548599b093b storage1 C3N-01818.RNA-Seq.R2.T C3N-01818 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71ab0297-dec9-45f2-a48a-37d19aa41426/180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3421335754 FASTQ NA 71ab0297-dec9-45f2-a48a-37d19aa41426 storage1 C3N-01818.RNA-Seq.transcriptome.T.hg38 C3N-01818 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf5f4669-aeae-49c5-b016-24bb97896647/64db4d73-f3fb-4997-93f8-71a98cd6b732.rna_seq.transcriptome.gdc_realn.bam 9000329548 BAM hg38 cf5f4669-aeae-49c5-b016-24bb97896647 storage1 -C3N-01818.WGS.N C3N-01818 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42569fa7-e7fe-4002-bd5f-9ed5af859700/CPT0168320002.WholeGenome.RP-1303.bam 58347178726 BAM hg19 42569fa7-e7fe-4002-bd5f-9ed5af859700 storage1 C3N-01818.WGS.N.hg38 C3N-01818 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/177f02b8-d8fc-4da9-9619-411582a25cd7/bd504223-27b1-4c70-af68-6985b7e5d23b_wgs_gdc_realn.bam 85455169092 BAM hg38 177f02b8-d8fc-4da9-9619-411582a25cd7 storage1 -C3N-01818.WGS.T C3N-01818 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50e010ce-650a-4c51-98bc-c3e971461052/CPT0168270006.WholeGenome.RP-1303.bam 62851912865 BAM hg19 50e010ce-650a-4c51-98bc-c3e971461052 storage1 C3N-01818.WGS.T.hg38 C3N-01818 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22e2c641-d4cd-46cf-ab29-697cad876617/f9340864-be80-405e-a3a3-e0b123762976_wgs_gdc_realn.bam 91961216211 BAM hg38 22e2c641-d4cd-46cf-ab29-697cad876617 storage1 -C3N-01818.WXS.N C3N-01818 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b413e7e4-1cf8-4c32-84fc-d770caaa046b/CPT0168320002.WholeExome.RP-1303.bam 36243803797 BAM hg19 b413e7e4-1cf8-4c32-84fc-d770caaa046b storage1 -C3N-01818.WXS.T C3N-01818 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f14f1716-e463-4ca3-99ec-e3f2bef9c83f/CPT0168270006.WholeExome.RP-1303.bam 31671952321 BAM hg19 f14f1716-e463-4ca3-99ec-e3f2bef9c83f storage1 C3N-01821.RNA-Seq.R1.T C3N-01821 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a42caea4-5690-4fe0-964d-404fa782f7e1/190523_UNC32-K00270_0176_BH7CW7BBXY_GAACCGCG-TGACCTTA_S2_L001_R1_001.fastq.gz 4480804902 FASTQ NA a42caea4-5690-4fe0-964d-404fa782f7e1 storage1 C3N-01821.RNA-Seq.R2.T C3N-01821 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a51f5c6-21d6-4b8a-b9c8-1cf58c74ca75/190523_UNC32-K00270_0176_BH7CW7BBXY_GAACCGCG-TGACCTTA_S2_L001_R2_001.fastq.gz 5117426385 FASTQ NA 4a51f5c6-21d6-4b8a-b9c8-1cf58c74ca75 storage1 C3N-01821.WGS.N.hg38 C3N-01821 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65d9870e-b4d3-41dd-97ac-c15fb7282101/eef72e7e-aa67-428b-a43f-a7d6dd477c24_wgs_gdc_realn.bam 88495885754 BAM hg38 65d9870e-b4d3-41dd-97ac-c15fb7282101 storage1 @@ -7889,13 +7511,9 @@ C3N-01849.RNA-Seq.R1.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-01849.RNA-Seq.R1.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/583387e2-75e7-4f09-be36-486effc226fd/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R1_001.fastq.gz 3307839110 FASTQ NA 583387e2-75e7-4f09-be36-486effc226fd storage1 C3N-01849.RNA-Seq.R2.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83d649cc-79e9-457a-9e7f-e0fb46c94f8a/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ NA 83d649cc-79e9-457a-9e7f-e0fb46c94f8a storage1 C3N-01849.RNA-Seq.R2.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83d649cc-79e9-457a-9e7f-e0fb46c94f8a/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ NA 83d649cc-79e9-457a-9e7f-e0fb46c94f8a storage1 -C3N-01849.WGS.N C3N-01849 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41abf016-07f9-4ad3-a5d6-861a86fc439c/CPT0224830002.WholeGenome.RP-2158.bam 26026553207 BAM hg19 41abf016-07f9-4ad3-a5d6-861a86fc439c storage1 C3N-01849.WGS.N.hg38 C3N-01849 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20c0f60b-3fab-4d2e-878b-23ad2d24d00a/bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wgs_gdc_realn.bam 78090125732 BAM hg38 20c0f60b-3fab-4d2e-878b-23ad2d24d00a storage1 -C3N-01849.WGS.T C3N-01849 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a6f9bda-1e93-4fa1-83d0-dd3e624844de/CPT0224780006.WholeGenome.RP-2158.bam 22035764736 BAM hg19 6a6f9bda-1e93-4fa1-83d0-dd3e624844de storage1 C3N-01849.WGS.T.hg38 C3N-01849 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73/049c6c50-80e2-46b6-bb4b-951301cf76f1_wgs_gdc_realn.bam 63623607195 BAM hg38 1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73 storage1 -C3N-01849.WXS.N C3N-01849 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70d01c24-e736-408e-8ddf-61c55dc60de4/CPT0224830002.WholeExome.RP-1303.bam 28026085376 BAM hg19 70d01c24-e736-408e-8ddf-61c55dc60de4 storage1 C3N-01849.WXS.N.hg38 C3N-01849 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5f45a87-326b-47a8-b39c-0efb79094bd5/bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wxs_gdc_realn.bam 38515425322 BAM hg38 f5f45a87-326b-47a8-b39c-0efb79094bd5 storage1 -C3N-01849.WXS.T C3N-01849 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65c12110-2efa-44de-a6a1-8823328fd1b0/CPT0224780006.WholeExome.RP-1303.bam 17373452560 BAM hg19 65c12110-2efa-44de-a6a1-8823328fd1b0 storage1 C3N-01849.WXS.T.hg38 C3N-01849 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/947927ab-08a2-444d-8164-b50ceee502bc/049c6c50-80e2-46b6-bb4b-951301cf76f1_wxs_gdc_realn.bam 24379241229 BAM hg38 947927ab-08a2-444d-8164-b50ceee502bc storage1 C3N-01850.RNA-Seq.R1.T.RRNA_oqKWWB C3N-01850 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5da572da-3bd7-4c0c-86c3-1e86cc3482af/190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R1_001.fastq.gz 3847474936 FASTQ NA 5da572da-3bd7-4c0c-86c3-1e86cc3482af storage1 C3N-01850.RNA-Seq.R2.T.RRNA_oqKWWB C3N-01850 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c11d25ee-91e0-40d1-abfa-cd21ed2df98a/190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R2_001.fastq.gz 4041617916 FASTQ NA c11d25ee-91e0-40d1-abfa-cd21ed2df98a storage1 @@ -7905,42 +7523,26 @@ C3N-01851.RNA-Seq.chimeric.T.hg38 C3N-01851 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01851.RNA-Seq.R1.T C3N-01851 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01bc3d1b-90a8-4045-a317-33d29575b67a/181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3912185114 FASTQ NA 01bc3d1b-90a8-4045-a317-33d29575b67a storage1 C3N-01851.RNA-Seq.R2.T C3N-01851 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1054b7d7-4b9b-4700-bdef-e069dab8c849/181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4197953612 FASTQ NA 1054b7d7-4b9b-4700-bdef-e069dab8c849 storage1 C3N-01851.RNA-Seq.transcriptome.T.hg38 C3N-01851 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1fee552-2385-45d3-a0fd-b5a9557a6c62/e23cf287-1d3b-4f27-86f3-d89dabfe5c10.rna_seq.transcriptome.gdc_realn.bam 9091783870 BAM hg38 b1fee552-2385-45d3-a0fd-b5a9557a6c62 storage1 -C3N-01851.WGS.N C3N-01851 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35864da6-e266-404c-ae01-c2beb343f37b/CPT0186120002.WholeGenome.RP-1303.bam 54343423025 BAM hg19 35864da6-e266-404c-ae01-c2beb343f37b storage1 C3N-01851.WGS.N.hg38 C3N-01851 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9ed756a-1b5d-48a3-b82a-807f17803b39/ba85de62-a722-4f2a-a296-c62622195e86_wgs_gdc_realn.bam 77843271265 BAM hg38 b9ed756a-1b5d-48a3-b82a-807f17803b39 storage1 -C3N-01851.WGS.T C3N-01851 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d6943f0-e372-4354-bbbd-e36e1350362d/CPT0186100006.WholeGenome.RP-1303.bam 62236814450 BAM hg19 0d6943f0-e372-4354-bbbd-e36e1350362d storage1 C3N-01851.WGS.T.hg38 C3N-01851 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6124609e-1a61-49f5-a5b9-32a56ca58fb0/e2e5dd96-5ce1-42d5-befd-7ba28a60290a_wgs_gdc_realn.bam 90367252302 BAM hg38 6124609e-1a61-49f5-a5b9-32a56ca58fb0 storage1 -C3N-01851.WXS.N C3N-01851 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04e7933d-8eb6-415a-913c-83d5a5b1df46/CPT0186120002.WholeExome.RP-1303.bam 28712672824 BAM hg19 04e7933d-8eb6-415a-913c-83d5a5b1df46 storage1 -C3N-01851.WXS.T C3N-01851 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50c6b722-2b7a-409c-beaa-b6bc286b601a/CPT0186100006.WholeExome.RP-1303.bam 26997067155 BAM hg19 50c6b722-2b7a-409c-beaa-b6bc286b601a storage1 C3N-01852.RNA-Seq.chimeric.T.hg38 C3N-01852 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e4bccd0-8e09-4ebb-89e8-093f6e6a81ac/19698baf-f4b2-46f1-907f-4af8d1d41b02.rna_seq.chimeric.gdc_realn.bam 187664969 BAM hg38 4e4bccd0-8e09-4ebb-89e8-093f6e6a81ac storage1 C3N-01852.RNA-Seq.R1.T C3N-01852 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44954158-c233-4b38-ba9f-4478abefe2c8/181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3857772720 FASTQ NA 44954158-c233-4b38-ba9f-4478abefe2c8 storage1 C3N-01852.RNA-Seq.R2.T C3N-01852 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0710afd1-8d04-4b2b-971a-00b1b4e266ac/181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4224237803 FASTQ NA 0710afd1-8d04-4b2b-971a-00b1b4e266ac storage1 C3N-01852.RNA-Seq.transcriptome.T.hg38 C3N-01852 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00eba3ad-04b9-4115-8860-b81f57f2389e/19698baf-f4b2-46f1-907f-4af8d1d41b02.rna_seq.transcriptome.gdc_realn.bam 8363223724 BAM hg38 00eba3ad-04b9-4115-8860-b81f57f2389e storage1 -C3N-01852.WGS.N C3N-01852 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d95d27b3-f55c-4d48-9e04-b0add1e2f3fb/CPT0182540002.WholeGenome.RP-1303.bam 61047247103 BAM hg19 d95d27b3-f55c-4d48-9e04-b0add1e2f3fb storage1 C3N-01852.WGS.N.hg38 C3N-01852 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98128dc9-e9f2-49a5-b9d9-a6ed16f2086a/5df57bba-1178-47d7-b964-08219811cd0b_wgs_gdc_realn.bam 87951231995 BAM hg38 98128dc9-e9f2-49a5-b9d9-a6ed16f2086a storage1 -C3N-01852.WGS.T C3N-01852 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f92deb20-d6d3-48b5-859f-815ba80ebb8c/CPT0182500006.WholeGenome.RP-1303.bam 53989674487 BAM hg19 f92deb20-d6d3-48b5-859f-815ba80ebb8c storage1 C3N-01852.WGS.T.hg38 C3N-01852 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b88411-df2b-44c8-9a4c-c97b465fdc7e/5f1e8acb-e97d-4915-9600-cd47b084100e_wgs_gdc_realn.bam 78505161924 BAM hg38 65b88411-df2b-44c8-9a4c-c97b465fdc7e storage1 -C3N-01852.WXS.N C3N-01852 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f497d13-aced-43ad-9dbb-b07e797c792f/CPT0182540002.WholeExome.RP-1303.bam 24680940972 BAM hg19 6f497d13-aced-43ad-9dbb-b07e797c792f storage1 -C3N-01852.WXS.T C3N-01852 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11ed4223-de0f-441a-88e7-b451e6b9eb94/CPT0182500006.WholeExome.RP-1303.bam 24064662190 BAM hg19 11ed4223-de0f-441a-88e7-b451e6b9eb94 storage1 C3N-01856.RNA-Seq.chimeric.T.hg38 C3N-01856 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ae79f1a-14f0-4fd0-ab1f-53a9be94888f/fdc8ec75-f157-4006-9b01-ddd2dd2d4439.rna_seq.chimeric.gdc_realn.bam 114556047 BAM hg38 0ae79f1a-14f0-4fd0-ab1f-53a9be94888f storage1 C3N-01856.RNA-Seq.R1.T C3N-01856 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed6bb432-cdeb-4851-860d-43b50894e82a/180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 3816425613 FASTQ NA ed6bb432-cdeb-4851-860d-43b50894e82a storage1 C3N-01856.RNA-Seq.R2.T C3N-01856 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9772e608-d91e-4d97-b16c-99dcbdd223e3/180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4200919889 FASTQ NA 9772e608-d91e-4d97-b16c-99dcbdd223e3 storage1 C3N-01856.RNA-Seq.transcriptome.T.hg38 C3N-01856 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53287574-d708-430e-a091-904c58c80949/fdc8ec75-f157-4006-9b01-ddd2dd2d4439.rna_seq.transcriptome.gdc_realn.bam 9463108976 BAM hg38 53287574-d708-430e-a091-904c58c80949 storage1 -C3N-01856.WGS.N C3N-01856 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6767a546-337a-4e3e-abd8-10a7599eafb4/CPT0162120002.WholeGenome.RP-1303.bam 60328961663 BAM hg19 6767a546-337a-4e3e-abd8-10a7599eafb4 storage1 C3N-01856.WGS.N.hg38 C3N-01856 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e90546a-b4c0-4061-ab38-a69473bad093/f10efa6b-8bd4-4cf3-ac29-40030b28813b_wgs_gdc_realn.bam 88047328190 BAM hg38 9e90546a-b4c0-4061-ab38-a69473bad093 storage1 -C3N-01856.WGS.T C3N-01856 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3434dbd-9786-48e6-b195-60d604e9f954/CPT0162100006.WholeGenome.RP-1303.bam 54428926047 BAM hg19 e3434dbd-9786-48e6-b195-60d604e9f954 storage1 C3N-01856.WGS.T.hg38 C3N-01856 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/455856d5-1b60-4d78-8591-8aea797add9e/486abf4c-bd38-4ee2-a2bc-87df864d1423_wgs_gdc_realn.bam 79412028971 BAM hg38 455856d5-1b60-4d78-8591-8aea797add9e storage1 -C3N-01856.WXS.N C3N-01856 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba317a0d-42db-4036-8d42-b08e8853729d/CPT0162120002.WholeExome.RP-1303.bam 27008848602 BAM hg19 ba317a0d-42db-4036-8d42-b08e8853729d storage1 -C3N-01856.WXS.T C3N-01856 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1756a335-e596-4b7f-b8ea-ce2b4b46cf41/CPT0162100006.WholeExome.RP-1303.bam 28124689459 BAM hg19 1756a335-e596-4b7f-b8ea-ce2b4b46cf41 storage1 C3N-01857.RNA-Seq.chimeric.T.hg38 C3N-01857 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1484aaa-31f9-4c8c-8372-a1f17f1cd9c6/0f69726c-edd1-4f9d-9d1d-bbdfaed9f920.rna_seq.chimeric.gdc_realn.bam 150060237 BAM hg38 b1484aaa-31f9-4c8c-8372-a1f17f1cd9c6 storage1 C3N-01857.RNA-Seq.R1.T C3N-01857 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75787440-f3e5-48f8-959f-9ff711677d3d/180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R1_001.fastq.gz 4388086445 FASTQ NA 75787440-f3e5-48f8-959f-9ff711677d3d storage1 C3N-01857.RNA-Seq.R2.T C3N-01857 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d5a71db-4335-4e75-bdbd-3f23655710be/180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R2_001.fastq.gz 5012516281 FASTQ NA 5d5a71db-4335-4e75-bdbd-3f23655710be storage1 C3N-01857.RNA-Seq.transcriptome.T.hg38 C3N-01857 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebdc5e11-860f-4822-8c72-ba637b9901e9/0f69726c-edd1-4f9d-9d1d-bbdfaed9f920.rna_seq.transcriptome.gdc_realn.bam 8397507401 BAM hg38 ebdc5e11-860f-4822-8c72-ba637b9901e9 storage1 -C3N-01857.WGS.N C3N-01857 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9c8b532-e688-453b-8cd5-3b3571ecdf85/CPT0162170002.WholeGenome.RP-1303.bam 64143017590 BAM hg19 c9c8b532-e688-453b-8cd5-3b3571ecdf85 storage1 C3N-01857.WGS.N.hg38 C3N-01857 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/159e558f-428b-40aa-b176-ec3aeed9cd15/3d771b8a-a107-41cc-b850-dd9639359d4e_wgs_gdc_realn.bam 92384124382 BAM hg38 159e558f-428b-40aa-b176-ec3aeed9cd15 storage1 -C3N-01857.WGS.T C3N-01857 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/285a96cc-b3a8-40a6-8809-d6ce5db0040f/CPT0162140007.WholeGenome.RP-1303.bam 54854216548 BAM hg19 285a96cc-b3a8-40a6-8809-d6ce5db0040f storage1 C3N-01857.WGS.T.hg38 C3N-01857 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29d2a834-5c30-49a1-ab88-3f601c274532/d41f100d-be16-400e-9596-2062c6eaad67_wgs_gdc_realn.bam 80021318021 BAM hg38 29d2a834-5c30-49a1-ab88-3f601c274532 storage1 -C3N-01857.WXS.N C3N-01857 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5d70c98-ff36-443c-adfd-3cfcfbe26a04/CPT0162170002.WholeExome.RP-1303.bam 24663544407 BAM hg19 b5d70c98-ff36-443c-adfd-3cfcfbe26a04 storage1 -C3N-01857.WXS.T C3N-01857 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3745e2c-e529-4f77-a897-936662fb17fc/CPT0162140007.WholeExome.RP-1303.bam 22493029863 BAM hg19 e3745e2c-e529-4f77-a897-936662fb17fc storage1 C3N-01858.RNA-Seq.R1.T C3N-01858 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bae560c8-d7af-44f5-965a-da697a6e0e1c/190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R1_001.fastq.gz 2878963606 FASTQ NA bae560c8-d7af-44f5-965a-da697a6e0e1c storage1 C3N-01858.RNA-Seq.R1.T C3N-01858 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf3622fe-6ee6-4a63-88f7-696916e75a5d/20210714_P1_E1_WB7988_plate1_S49_R1_001.fastq.gz 6405948347 FASTQ NA bf3622fe-6ee6-4a63-88f7-696916e75a5d storage1 C3N-01858.RNA-Seq.R2.T C3N-01858 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74695714-ccc5-4c1e-bbbd-03c1f3f37dd3/20210714_P1_E1_WB7988_plate1_S49_R2_001.fastq.gz 6600620434 FASTQ NA 74695714-ccc5-4c1e-bbbd-03c1f3f37dd3 storage1 @@ -8429,62 +8031,38 @@ C3N-02181.RNA-Seq.chimeric.T.hg38 C3N-02181 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-02181.RNA-Seq.R1.T C3N-02181 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfb8fa20-a639-42fc-873a-9d07271e3122/180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4264542017 FASTQ NA cfb8fa20-a639-42fc-873a-9d07271e3122 storage1 C3N-02181.RNA-Seq.R2.T C3N-02181 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b32e9f2c-4aae-4bd8-bc47-7134bc1bb92c/180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4670211980 FASTQ NA b32e9f2c-4aae-4bd8-bc47-7134bc1bb92c storage1 C3N-02181.RNA-Seq.transcriptome.T.hg38 C3N-02181 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1050a45-6a91-4f0d-afbc-8b9a0e4dc309/01cdfbec-b7b8-47bb-9b3c-04b9ceb89d19.rna_seq.transcriptome.gdc_realn.bam 10494815301 BAM hg38 d1050a45-6a91-4f0d-afbc-8b9a0e4dc309 storage1 -C3N-02181.WGS.N C3N-02181 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddc57c40-b987-4ab8-abcd-3238e31dff72/CPT0168430002.WholeGenome.RP-1303.bam 61662926101 BAM hg19 ddc57c40-b987-4ab8-abcd-3238e31dff72 storage1 C3N-02181.WGS.N.hg38 C3N-02181 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfde6003-aa52-42d0-b12c-ec711668f23b/c1dac155-9fca-4217-893e-8b02a8e95dd4_wgs_gdc_realn.bam 90545302597 BAM hg38 cfde6003-aa52-42d0-b12c-ec711668f23b storage1 -C3N-02181.WGS.T C3N-02181 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6710fcd-9939-4c1b-a321-ca7614e48ba2/CPT0168380006.WholeGenome.RP-1303.bam 63204082007 BAM hg19 f6710fcd-9939-4c1b-a321-ca7614e48ba2 storage1 C3N-02181.WGS.T.hg38 C3N-02181 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bbd168-8f00-4412-ab15-83603e4abdb6/90b9cda0-892e-4532-a1c5-44df34c0e5a4_wgs_gdc_realn.bam 93689448748 BAM hg38 80bbd168-8f00-4412-ab15-83603e4abdb6 storage1 -C3N-02181.WXS.N C3N-02181 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2f21166-222d-490f-984d-6c136da50b2c/CPT0168430002.WholeExome.RP-1303.bam 32928218822 BAM hg19 e2f21166-222d-490f-984d-6c136da50b2c storage1 -C3N-02181.WXS.T C3N-02181 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac3d32e2-2432-417b-a1a3-34207abb8bf0/CPT0168380006.WholeExome.RP-1303.bam 30188644753 BAM hg19 ac3d32e2-2432-417b-a1a3-34207abb8bf0 storage1 C3N-02183.RNA-Seq.chimeric.T.hg38 C3N-02183 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bee45675-43d8-4cc4-9bf2-15923ab0bf4c/c2ec45fc-3620-47a3-8ddb-f3db320ba09f.rna_seq.chimeric.gdc_realn.bam 28004234 BAM hg38 bee45675-43d8-4cc4-9bf2-15923ab0bf4c storage1 C3N-02183.RNA-Seq.R1.T C3N-02183 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7937d42d-b381-45a1-b45c-935d6359482e/180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3716036241 FASTQ NA 7937d42d-b381-45a1-b45c-935d6359482e storage1 C3N-02183.RNA-Seq.R2.T C3N-02183 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76ab475c-3258-41fc-ad50-a91680b3cd9e/180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3806358030 FASTQ NA 76ab475c-3258-41fc-ad50-a91680b3cd9e storage1 C3N-02183.RNA-Seq.transcriptome.T.hg38 C3N-02183 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be03effa-e989-4b8e-a03a-b36c0ad8c84f/c2ec45fc-3620-47a3-8ddb-f3db320ba09f.rna_seq.transcriptome.gdc_realn.bam 9536008847 BAM hg38 be03effa-e989-4b8e-a03a-b36c0ad8c84f storage1 -C3N-02183.WGS.N C3N-02183 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c21fa708-fb23-4c08-a5c9-1a8fc9061ae5/CPT0168540004.WholeGenome.RP-1303.bam 53209010684 BAM hg19 c21fa708-fb23-4c08-a5c9-1a8fc9061ae5 storage1 C3N-02183.WGS.N.hg38 C3N-02183 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/226a2938-6b47-4ad8-a6d0-f7e4eb129a14/ede2c262-e52f-4ba3-a802-058195b89e64_wgs_gdc_realn.bam 78172680973 BAM hg38 226a2938-6b47-4ad8-a6d0-f7e4eb129a14 storage1 -C3N-02183.WGS.T C3N-02183 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe2a75f0-f485-40c9-bb7b-a594a9f3fec5/CPT0168480006.WholeGenome.RP-1303.bam 62074141718 BAM hg19 fe2a75f0-f485-40c9-bb7b-a594a9f3fec5 storage1 C3N-02183.WGS.T.hg38 C3N-02183 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54b12602-3d4f-4610-9667-10493d4d84ab/bd96ecbf-17b9-4dac-8090-05191cf90ee5_wgs_gdc_realn.bam 92015884024 BAM hg38 54b12602-3d4f-4610-9667-10493d4d84ab storage1 -C3N-02183.WXS.N C3N-02183 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5654d45-a6e9-435e-8be3-bc2968631856/CPT0168540004.WholeExome.RP-1303.bam 36830321938 BAM hg19 c5654d45-a6e9-435e-8be3-bc2968631856 storage1 -C3N-02183.WXS.T C3N-02183 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad550efd-d975-4676-b66a-e3a87f42d2f6/CPT0168480006.WholeExome.RP-1303.bam 21209100825 BAM hg19 ad550efd-d975-4676-b66a-e3a87f42d2f6 storage1 C3N-02185.RNA-Seq.chimeric.T.hg38 C3N-02185 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c816655d-3a59-4a46-a491-b4c0dd1f718c/f2bea98e-f4e6-400b-ae9c-10bad2f1a72d.rna_seq.chimeric.gdc_realn.bam 32261052 BAM hg38 c816655d-3a59-4a46-a491-b4c0dd1f718c storage1 C3N-02185.RNA-Seq.R1.T C3N-02185 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d2fbbc6-40d1-4832-a3bf-f619f4cdbb71/180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4081098049 FASTQ NA 9d2fbbc6-40d1-4832-a3bf-f619f4cdbb71 storage1 C3N-02185.RNA-Seq.R2.T C3N-02185 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e1b3952-7b8a-4b7e-b0e8-e79078c3648e/180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4373203364 FASTQ NA 2e1b3952-7b8a-4b7e-b0e8-e79078c3648e storage1 C3N-02185.RNA-Seq.transcriptome.T.hg38 C3N-02185 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd172c6f-b1d9-41e3-a00c-68e86c3faa58/f2bea98e-f4e6-400b-ae9c-10bad2f1a72d.rna_seq.transcriptome.gdc_realn.bam 9988082266 BAM hg38 bd172c6f-b1d9-41e3-a00c-68e86c3faa58 storage1 -C3N-02185.WGS.N C3N-02185 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d40bd842-0e49-4351-a5fd-b0d587115940/CPT0168650002.WholeGenome.RP-1303.bam 54313533743 BAM hg19 d40bd842-0e49-4351-a5fd-b0d587115940 storage1 C3N-02185.WGS.N.hg38 C3N-02185 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35c10200-63e3-4aa0-a326-06081c354282/ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wgs_gdc_realn.bam 79381413593 BAM hg38 35c10200-63e3-4aa0-a326-06081c354282 storage1 -C3N-02185.WGS.T C3N-02185 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58f7f8d5-e115-4044-bb92-3ef3aec3b1ad/CPT0168590006.WholeGenome.RP-1303.bam 62380492645 BAM hg19 58f7f8d5-e115-4044-bb92-3ef3aec3b1ad storage1 C3N-02185.WGS.T.hg38 C3N-02185 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28becd2a-daf1-4ec5-8d0d-7634249c7bd1/98a99ed8-3078-434b-8734-672dfba4299f_wgs_gdc_realn.bam 91562944421 BAM hg38 28becd2a-daf1-4ec5-8d0d-7634249c7bd1 storage1 -C3N-02185.WXS.N C3N-02185 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb3674c5-73b2-4712-b17b-66f2ed6cd104/CPT0168650002.WholeExome.RP-1303.bam 40597110082 BAM hg19 fb3674c5-73b2-4712-b17b-66f2ed6cd104 storage1 -C3N-02185.WXS.T C3N-02185 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d619d029-d2b6-408f-8916-a6e6b83c3c61/CPT0168590006.WholeExome.RP-1303.bam 23259176811 BAM hg19 d619d029-d2b6-408f-8916-a6e6b83c3c61 storage1 C3N-02186.RNA-Seq.chimeric.T.hg38 C3N-02186 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c53b6a0e-1b25-4674-b0e2-30f7c796f28a/24075898-869a-46dc-823b-36bdccd1b538.rna_seq.chimeric.gdc_realn.bam 31357351 BAM hg38 c53b6a0e-1b25-4674-b0e2-30f7c796f28a storage1 C3N-02186.RNA-Seq.R1.T C3N-02186 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a653e18-e4d3-4fe6-837e-4eeec9cb6d8b/180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3677947751 FASTQ NA 8a653e18-e4d3-4fe6-837e-4eeec9cb6d8b storage1 C3N-02186.RNA-Seq.R2.T C3N-02186 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe54e8ec-05e4-4ce4-9223-7604b3651819/180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4003134154 FASTQ NA fe54e8ec-05e4-4ce4-9223-7604b3651819 storage1 C3N-02186.RNA-Seq.transcriptome.T.hg38 C3N-02186 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3abb6bc5-57eb-4750-a590-0b8ca4c64c62/24075898-869a-46dc-823b-36bdccd1b538.rna_seq.transcriptome.gdc_realn.bam 8819624707 BAM hg38 3abb6bc5-57eb-4750-a590-0b8ca4c64c62 storage1 -C3N-02186.WGS.N C3N-02186 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5931a880-12bf-4e57-98c9-f615ec3959b3/CPT0168760004.WholeGenome.RP-1303.bam 58566308529 BAM hg19 5931a880-12bf-4e57-98c9-f615ec3959b3 storage1 C3N-02186.WGS.N.hg38 C3N-02186 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee0a4490-3d5d-4690-8bed-a38db3e2c1a3/90be4c44-6629-4db7-99be-e6f26416714d_wgs_gdc_realn.bam 83909668555 BAM hg38 ee0a4490-3d5d-4690-8bed-a38db3e2c1a3 storage1 -C3N-02186.WGS.T C3N-02186 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/718d432a-4bef-4b44-ba38-c5312a314ed9/CPT0168720006.WholeGenome.RP-1303.bam 64176788813 BAM hg19 718d432a-4bef-4b44-ba38-c5312a314ed9 storage1 C3N-02186.WGS.T.hg38 C3N-02186 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2300cd3-70c3-4ac2-90d7-f96368b4d4ba/20703356-6eec-4dc7-a380-a6114fcc278f_wgs_gdc_realn.bam 94007956278 BAM hg38 d2300cd3-70c3-4ac2-90d7-f96368b4d4ba storage1 -C3N-02186.WXS.N C3N-02186 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/867f02c5-af47-448e-b9ef-2e3dc5a67d51/CPT0168760004.WholeExome.RP-1303.bam 34096373855 BAM hg19 867f02c5-af47-448e-b9ef-2e3dc5a67d51 storage1 -C3N-02186.WXS.T C3N-02186 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc7936cb-a1c8-4166-959c-347d927b8135/CPT0168720006.WholeExome.RP-1303.bam 22585146830 BAM hg19 cc7936cb-a1c8-4166-959c-347d927b8135 storage1 C3N-02188.RNA-Seq.chimeric.T.hg38 C3N-02188 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d20fe568-3b2e-4c3e-bc72-890a61aa0b52/2c57cb9b-9996-4619-80eb-c66eefedca1e.rna_seq.chimeric.gdc_realn.bam 36667724 BAM hg38 d20fe568-3b2e-4c3e-bc72-890a61aa0b52 storage1 C3N-02188.RNA-Seq.R1.T C3N-02188 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17b19efd-d99c-4431-8975-392be567d955/180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4872445125 FASTQ NA 17b19efd-d99c-4431-8975-392be567d955 storage1 C3N-02188.RNA-Seq.R2.T C3N-02188 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cec104e-e480-4804-a01e-4b3aa2e3b147/180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 5271764250 FASTQ NA 9cec104e-e480-4804-a01e-4b3aa2e3b147 storage1 C3N-02188.RNA-Seq.transcriptome.T.hg38 C3N-02188 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca927751-b7ef-4ed5-8ede-d16fbed93314/2c57cb9b-9996-4619-80eb-c66eefedca1e.rna_seq.transcriptome.gdc_realn.bam 12361598093 BAM hg38 ca927751-b7ef-4ed5-8ede-d16fbed93314 storage1 -C3N-02188.WGS.N C3N-02188 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7fae748-9aad-44b8-a676-87f91c3812be/CPT0168870002.WholeGenome.RP-1303.bam 67438684582 BAM hg19 e7fae748-9aad-44b8-a676-87f91c3812be storage1 C3N-02188.WGS.N.hg38 C3N-02188 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/462ec60f-d9e1-4cca-91e6-6146d9e12243/ea611a56-b305-4dcc-9d4b-620f7ff6410a_wgs_gdc_realn.bam 99011112123 BAM hg38 462ec60f-d9e1-4cca-91e6-6146d9e12243 storage1 -C3N-02188.WGS.T C3N-02188 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9940759-3543-4d50-ab47-566af6b808dd/CPT0168830006.WholeGenome.RP-1303.bam 59728142886 BAM hg19 e9940759-3543-4d50-ab47-566af6b808dd storage1 C3N-02188.WGS.T.hg38 C3N-02188 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b03c3510-17f5-4b92-b8eb-fd72099e47d0/2754920b-81c5-4087-8d0a-3d4142cff7c4_wgs_gdc_realn.bam 87025309564 BAM hg38 b03c3510-17f5-4b92-b8eb-fd72099e47d0 storage1 -C3N-02188.WXS.N C3N-02188 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d30a7e09-a1b6-425d-b9a6-314632d349d4/CPT0168870002.WholeExome.RP-1303.bam 30506934611 BAM hg19 d30a7e09-a1b6-425d-b9a6-314632d349d4 storage1 -C3N-02188.WXS.T C3N-02188 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10ef9f85-d29f-47e6-8c2f-12aa103ea858/CPT0168830006.WholeExome.RP-1303.bam 22950364158 BAM hg19 10ef9f85-d29f-47e6-8c2f-12aa103ea858 storage1 C3N-02190.RNA-Seq.chimeric.T.hg38 C3N-02190 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb8c629f-0677-4758-9f7a-75d0ec7ba654/b018dfdc-2137-4c34-b4bf-05cd7ab27e2c.rna_seq.chimeric.gdc_realn.bam 42766741 BAM hg38 bb8c629f-0677-4758-9f7a-75d0ec7ba654 storage1 C3N-02190.RNA-Seq.R1.T C3N-02190 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dff391bb-5ef5-4fe5-b902-a66f7d43af89/180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R1_001.fastq.gz 4577241175 FASTQ NA dff391bb-5ef5-4fe5-b902-a66f7d43af89 storage1 C3N-02190.RNA-Seq.R2.T C3N-02190 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf451c95-8a88-4e2c-bd89-2c4911a90a90/180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R2_001.fastq.gz 4780517006 FASTQ NA bf451c95-8a88-4e2c-bd89-2c4911a90a90 storage1 C3N-02190.RNA-Seq.transcriptome.T.hg38 C3N-02190 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddd06621-1c0c-4c5a-ac88-8bf03db5970d/b018dfdc-2137-4c34-b4bf-05cd7ab27e2c.rna_seq.transcriptome.gdc_realn.bam 12849225988 BAM hg38 ddd06621-1c0c-4c5a-ac88-8bf03db5970d storage1 -C3N-02190.WGS.N C3N-02190 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69044463-d458-4dfd-8fa5-77ace6a4da7e/CPT0205510002.WholeGenome.RP-1303.bam 56523101733 BAM hg19 69044463-d458-4dfd-8fa5-77ace6a4da7e storage1 C3N-02190.WGS.N.hg38 C3N-02190 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1907eba9-edc5-45eb-bf07-21627298553b/a6e52347-ea57-438b-963b-26d708da3ad1_wgs_gdc_realn.bam 82619204743 BAM hg38 1907eba9-edc5-45eb-bf07-21627298553b storage1 -C3N-02190.WGS.T C3N-02190 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e3bdebf-990c-4e85-aea5-c07ddfc1b687/CPT0205450007.WholeGenome.RP-1303.bam 65614611212 BAM hg19 5e3bdebf-990c-4e85-aea5-c07ddfc1b687 storage1 C3N-02190.WGS.T.hg38 C3N-02190 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/672fe01c-68fd-470b-b4bb-5ec74c780139/463480cc-d006-46a5-9812-f56652c2c3f0_wgs_gdc_realn.bam 95574824932 BAM hg38 672fe01c-68fd-470b-b4bb-5ec74c780139 storage1 -C3N-02190.WXS.N C3N-02190 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7f9299f-00d0-4ae3-93e7-0e6545e0cbfc/CPT0205510002.WholeExome.RP-1303.bam 30522709409 BAM hg19 c7f9299f-00d0-4ae3-93e7-0e6545e0cbfc storage1 -C3N-02190.WXS.T C3N-02190 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/799669f9-8030-4bca-9067-e18956275328/CPT0205450007.WholeExome.RP-1303.bam 23235623574 BAM hg19 799669f9-8030-4bca-9067-e18956275328 storage1 C3N-02192.RNA-Seq.R1.A C3N-02192 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9de0693d-f6be-4754-bb22-d139c02c5f7c/190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R1_001.fastq.gz 3673464858 FASTQ NA 9de0693d-f6be-4754-bb22-d139c02c5f7c storage1 C3N-02192.RNA-Seq.R1.T C3N-02192 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a5ab6a1-31e3-4570-965d-1ebbea599c26/190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R1_001.fastq.gz 3863188115 FASTQ NA 4a5ab6a1-31e3-4570-965d-1ebbea599c26 storage1 C3N-02192.RNA-Seq.R2.A C3N-02192 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d604433-ecb0-4567-a1d1-8039fc933014/190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R2_001.fastq.gz 3766184346 FASTQ NA 5d604433-ecb0-4567-a1d1-8039fc933014 storage1 @@ -8580,33 +8158,21 @@ C3N-02255.RNA-Seq.chimeric.T.hg38 C3N-02255 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-02255.RNA-Seq.R1.T C3N-02255 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ddd2ee9-f842-40ce-9ae4-9a0a2c165f11/181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3704735928 FASTQ NA 6ddd2ee9-f842-40ce-9ae4-9a0a2c165f11 storage1 C3N-02255.RNA-Seq.R2.T C3N-02255 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93c7ca01-341f-4072-a3b1-aee0d1b9acda/181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3951356121 FASTQ NA 93c7ca01-341f-4072-a3b1-aee0d1b9acda storage1 C3N-02255.RNA-Seq.transcriptome.T.hg38 C3N-02255 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/32786bf5-d5c4-4d75-a411-630a6d72cc38/24baeb9d-b5bf-4ab6-b499-c78716c9a100.rna_seq.transcriptome.gdc_realn.bam 7157611529 BAM hg38 32786bf5-d5c4-4d75-a411-630a6d72cc38 storage1 -C3N-02255.WGS.N C3N-02255 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/727a41a7-7dfe-4899-acfa-6a61c64e3343/CPT0182570002.WholeGenome.RP-1303.bam 55148462856 BAM hg19 727a41a7-7dfe-4899-acfa-6a61c64e3343 storage1 C3N-02255.WGS.N.hg38 C3N-02255 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e62907e-480f-4908-a82d-c54833da83c9/49118b25-320a-4b67-abf6-7c7907ee1533_wgs_gdc_realn.bam 80547533085 BAM hg38 1e62907e-480f-4908-a82d-c54833da83c9 storage1 -C3N-02255.WGS.T C3N-02255 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1495c0f-55f5-49fd-aeeb-48fae434bd68/CPT0182550006.WholeGenome.RP-1303.bam 64400621366 BAM hg19 f1495c0f-55f5-49fd-aeeb-48fae434bd68 storage1 C3N-02255.WGS.T.hg38 C3N-02255 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cb100a4-5e0f-4a51-ba46-18be1e58160a/867ec78e-ed0c-4563-a551-f460cde652c4_wgs_gdc_realn.bam 94524074122 BAM hg38 5cb100a4-5e0f-4a51-ba46-18be1e58160a storage1 -C3N-02255.WXS.N C3N-02255 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55257136-9685-4399-b095-5370f7e68434/CPT0182570002.WholeExome.RP-1303.bam 26295527716 BAM hg19 55257136-9685-4399-b095-5370f7e68434 storage1 -C3N-02255.WXS.T C3N-02255 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4feea2de-cf18-4307-ab77-3c37ccdb7465/CPT0182550006.WholeExome.RP-1303.bam 27814633375 BAM hg19 4feea2de-cf18-4307-ab77-3c37ccdb7465 storage1 C3N-02256.RNA-Seq.chimeric.T.hg38 C3N-02256 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c631145f-acce-4795-b6e0-ce37c83118e7/a03292ad-4a82-4af0-b00b-046a578e1bcb.rna_seq.chimeric.gdc_realn.bam 146910337 BAM hg38 c631145f-acce-4795-b6e0-ce37c83118e7 storage1 C3N-02256.RNA-Seq.R1.T C3N-02256 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88d33533-fe80-485b-a2b7-a81ff8729921/181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R1_001.fastq.gz 4445956614 FASTQ NA 88d33533-fe80-485b-a2b7-a81ff8729921 storage1 C3N-02256.RNA-Seq.R2.T C3N-02256 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7855be61-2390-40e0-8b9a-54eb82b0de93/181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R2_001.fastq.gz 4826728081 FASTQ NA 7855be61-2390-40e0-8b9a-54eb82b0de93 storage1 C3N-02256.RNA-Seq.transcriptome.T.hg38 C3N-02256 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74fb0f7f-242e-49cd-b55f-93aaceb29750/a03292ad-4a82-4af0-b00b-046a578e1bcb.rna_seq.transcriptome.gdc_realn.bam 10289431483 BAM hg38 74fb0f7f-242e-49cd-b55f-93aaceb29750 storage1 -C3N-02256.WGS.N C3N-02256 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30b0e8e5-6cb3-4357-91ef-4cc009a56349/CPT0182600002.WholeGenome.RP-1303.bam 62174645424 BAM hg19 30b0e8e5-6cb3-4357-91ef-4cc009a56349 storage1 C3N-02256.WGS.N.hg38 C3N-02256 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/138d8c4d-3a80-49ef-83fd-6bd8d8677c2a/75eeaabd-f938-4f59-afb4-31dd6341c6ff_wgs_gdc_realn.bam 90940565795 BAM hg38 138d8c4d-3a80-49ef-83fd-6bd8d8677c2a storage1 -C3N-02256.WGS.T C3N-02256 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b88a65f-0f8b-4e02-ae4c-3a9aafb3c5be/CPT0182580006.WholeGenome.RP-1303.bam 63526398489 BAM hg19 0b88a65f-0f8b-4e02-ae4c-3a9aafb3c5be storage1 C3N-02256.WGS.T.hg38 C3N-02256 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29ac1663-e57e-4012-aa22-c73193db7907/24815b9c-b5a1-4855-b8d2-116875c5c1bb_wgs_gdc_realn.bam 91919707825 BAM hg38 29ac1663-e57e-4012-aa22-c73193db7907 storage1 -C3N-02256.WXS.N C3N-02256 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b8205c3-d8d0-429d-afc4-26e7c95358aa/CPT0182600002.WholeExome.RP-1303.bam 31413307624 BAM hg19 9b8205c3-d8d0-429d-afc4-26e7c95358aa storage1 -C3N-02256.WXS.T C3N-02256 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e7037df-652f-465f-b1f4-5d8477549946/CPT0182580006.WholeExome.RP-1303.bam 31235876071 BAM hg19 2e7037df-652f-465f-b1f4-5d8477549946 storage1 C3N-02259.RNA-Seq.R1.T C3N-02259 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/611120e0-9d64-40e8-ad9f-7a7ae8092067/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ NA 611120e0-9d64-40e8-ad9f-7a7ae8092067 storage1 C3N-02259.RNA-Seq.R1.T C3N-02259 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/611120e0-9d64-40e8-ad9f-7a7ae8092067/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ NA 611120e0-9d64-40e8-ad9f-7a7ae8092067 storage1 C3N-02259.RNA-Seq.R2.T C3N-02259 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11e7d48b-1bfe-4892-8eca-6a22a1b8649a/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ NA 11e7d48b-1bfe-4892-8eca-6a22a1b8649a storage1 C3N-02259.RNA-Seq.R2.T C3N-02259 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11e7d48b-1bfe-4892-8eca-6a22a1b8649a/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ NA 11e7d48b-1bfe-4892-8eca-6a22a1b8649a storage1 -C3N-02259.WGS.N C3N-02259 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/651f92d8-0c95-45bc-a251-3dabda9b9c3e/CPT0244850002.WholeGenome.RP-2158.bam 22539611729 BAM hg19 651f92d8-0c95-45bc-a251-3dabda9b9c3e storage1 C3N-02259.WGS.N.hg38 C3N-02259 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bd2584-7377-4a12-b6e7-e6f329974607/6ba5ae6a-aa56-4806-b46b-c46b0169f107_wgs_gdc_realn.bam 65671654026 BAM hg38 80bd2584-7377-4a12-b6e7-e6f329974607 storage1 -C3N-02259.WGS.T C3N-02259 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca024786-6ce2-4a4c-9f7d-c54c9d4221c2/CPT0244830006.WholeGenome.RP-2158.bam 22620549920 BAM hg19 ca024786-6ce2-4a4c-9f7d-c54c9d4221c2 storage1 C3N-02259.WGS.T.hg38 C3N-02259 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ab46c4f-c4af-4fba-aa78-9a124221b6a3/e14a46ba-704d-4e84-876e-46569248569c_wgs_gdc_realn.bam 67217998804 BAM hg38 9ab46c4f-c4af-4fba-aa78-9a124221b6a3 storage1 -C3N-02259.WXS.N C3N-02259 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1eb497b2-eed1-45bb-b46b-a6963d996134/CPT0244850002.WholeExome.RP-1303.bam 23358305597 BAM hg19 1eb497b2-eed1-45bb-b46b-a6963d996134 storage1 C3N-02259.WXS.N.hg38 C3N-02259 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e909555-b3b3-4165-bfb3-76380c7e964e/6ba5ae6a-aa56-4806-b46b-c46b0169f107_wxs_gdc_realn.bam 30780507901 BAM hg38 4e909555-b3b3-4165-bfb3-76380c7e964e storage1 -C3N-02259.WXS.T C3N-02259 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71da1801-69f7-40c3-8e26-961f3326e2c0/CPT0244830006.WholeExome.RP-1303.bam 23855654353 BAM hg19 71da1801-69f7-40c3-8e26-961f3326e2c0 storage1 C3N-02259.WXS.T.hg38 C3N-02259 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a83fa0d-8c52-4120-a68e-ed04ee910d99/e14a46ba-704d-4e84-876e-46569248569c_wxs_gdc_realn.bam 33697360977 BAM hg38 2a83fa0d-8c52-4120-a68e-ed04ee910d99 storage1 C3N-02261.RNA-Seq.R1.A C3N-02261 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/815b2149-ece4-4c82-8dfb-63b2d0af96e9/210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3830631847 FASTQ NA 815b2149-ece4-4c82-8dfb-63b2d0af96e9 storage1 C3N-02261.RNA-Seq.R1.T C3N-02261 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e42c45c9-4e7a-4ab5-98f0-901f0e838227/210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3759868376 FASTQ NA e42c45c9-4e7a-4ab5-98f0-901f0e838227 storage1 @@ -8697,13 +8263,9 @@ C3N-02286.RNA-Seq.R1.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-02286.RNA-Seq.R1.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02665bb1-0f40-4959-9017-1d20d7a15ced/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ NA 02665bb1-0f40-4959-9017-1d20d7a15ced storage1 C3N-02286.RNA-Seq.R2.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bdd1ba-fe88-4d31-b371-bd54b3859722/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ NA 80bdd1ba-fe88-4d31-b371-bd54b3859722 storage1 C3N-02286.RNA-Seq.R2.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bdd1ba-fe88-4d31-b371-bd54b3859722/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ NA 80bdd1ba-fe88-4d31-b371-bd54b3859722 storage1 -C3N-02286.WGS.N C3N-02286 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/207b0c66-831f-4fc7-9714-7b9dbc6d286c/CPT0244820002.WholeGenome.RP-2158.bam 25059198039 BAM hg19 207b0c66-831f-4fc7-9714-7b9dbc6d286c storage1 C3N-02286.WGS.N.hg38 C3N-02286 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/049469de-687c-4e38-bddb-a16aabc783b1/ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wgs_gdc_realn.bam 77117048003 BAM hg38 049469de-687c-4e38-bddb-a16aabc783b1 storage1 -C3N-02286.WGS.T C3N-02286 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d4e1b94-0bc1-483b-8d13-f163e3aa239c/CPT0244760006.WholeGenome.RP-2158.bam 27211004051 BAM hg19 5d4e1b94-0bc1-483b-8d13-f163e3aa239c storage1 C3N-02286.WGS.T.hg38 C3N-02286 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/513c7439-2b46-4105-ae68-efcee2cdddaf/4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wgs_gdc_realn.bam 80364977264 BAM hg38 513c7439-2b46-4105-ae68-efcee2cdddaf storage1 -C3N-02286.WXS.N C3N-02286 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb4d5bbb-2ccc-4536-8810-5b8c26966cc4/CPT0244820002.WholeExome.RP-1303.bam 24861070255 BAM hg19 fb4d5bbb-2ccc-4536-8810-5b8c26966cc4 storage1 C3N-02286.WXS.N.hg38 C3N-02286 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4f55a53-fd44-45ee-906c-dc8706ec87b2/ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wxs_gdc_realn.bam 33503551009 BAM hg38 c4f55a53-fd44-45ee-906c-dc8706ec87b2 storage1 -C3N-02286.WXS.T C3N-02286 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eda81041-c710-4a34-820b-0ac80720e269/CPT0244760006.WholeExome.RP-1303.bam 22922615721 BAM hg19 eda81041-c710-4a34-820b-0ac80720e269 storage1 C3N-02286.WXS.T.hg38 C3N-02286 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ef99148-c0f0-49c4-a112-d11db3c629f6/4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wxs_gdc_realn.bam 31977769095 BAM hg38 1ef99148-c0f0-49c4-a112-d11db3c629f6 storage1 C3N-02288.RNA-Seq.R1.A C3N-02288 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cbd08c2-d1b5-4b79-bbdd-123cd1403623/190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R1_001.fastq.gz 3836916330 FASTQ NA 6cbd08c2-d1b5-4b79-bbdd-123cd1403623 storage1 C3N-02288.RNA-Seq.R1.T C3N-02288 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39642b1f-d674-4058-b22d-5448545cbd46/181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4108950066 FASTQ NA 39642b1f-d674-4058-b22d-5448545cbd46 storage1 @@ -9054,13 +8616,9 @@ C3N-02599.RNA-Seq.R1.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-02599.RNA-Seq.R1.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48cfa054-e4e7-4707-8f4f-1464920cd330/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ NA 48cfa054-e4e7-4707-8f4f-1464920cd330 storage1 C3N-02599.RNA-Seq.R2.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f34ce994-d55e-49cb-bb17-93e3a4874810/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ NA f34ce994-d55e-49cb-bb17-93e3a4874810 storage1 C3N-02599.RNA-Seq.R2.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f34ce994-d55e-49cb-bb17-93e3a4874810/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ NA f34ce994-d55e-49cb-bb17-93e3a4874810 storage1 -C3N-02599.WGS.N C3N-02599 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/474416f9-0b17-4e8b-8ebc-f81fbc3f399b/CPT0224860002.WholeGenome.RP-2158.bam 24996003121 BAM hg19 474416f9-0b17-4e8b-8ebc-f81fbc3f399b storage1 C3N-02599.WGS.N.hg38 C3N-02599 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68d465da-3999-4a59-8573-fe84d4170d38/834e776f-c515-46ba-b94e-ae7afe7663ea_wgs_gdc_realn.bam 74853169740 BAM hg38 68d465da-3999-4a59-8573-fe84d4170d38 storage1 -C3N-02599.WGS.T C3N-02599 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/632b83d0-1085-4038-a036-946722d426e8/CPT0224840006.WholeGenome.RP-2158.bam 23281634761 BAM hg19 632b83d0-1085-4038-a036-946722d426e8 storage1 C3N-02599.WGS.T.hg38 C3N-02599 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b532f93-73c6-4ace-b9fc-2ac02ba09301/2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wgs_gdc_realn.bam 65754798136 BAM hg38 1b532f93-73c6-4ace-b9fc-2ac02ba09301 storage1 -C3N-02599.WXS.N C3N-02599 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80e2e08c-f3ed-42f1-bbd8-5b5a5e21986f/CPT0224860002.WholeExome.RP-1303.bam 26628614397 BAM hg19 80e2e08c-f3ed-42f1-bbd8-5b5a5e21986f storage1 C3N-02599.WXS.N.hg38 C3N-02599 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5aab09ad-6c94-42a4-bcc2-7ee916573a28/834e776f-c515-46ba-b94e-ae7afe7663ea_wxs_gdc_realn.bam 37230237735 BAM hg38 5aab09ad-6c94-42a4-bcc2-7ee916573a28 storage1 -C3N-02599.WXS.T C3N-02599 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/15239510-48e4-45b0-9dd0-e37ea89ff0fd/CPT0224840006.WholeExome.RP-1303.bam 20153296974 BAM hg19 15239510-48e4-45b0-9dd0-e37ea89ff0fd storage1 C3N-02599.WXS.T.hg38 C3N-02599 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d643f49-1997-472d-817d-f06236fda307/2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wxs_gdc_realn.bam 28203970919 BAM hg38 9d643f49-1997-472d-817d-f06236fda307 storage1 C3N-02631.RNA-Seq.R1.T C3N-02631 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64680036-719e-49bf-a651-840cc7c87ea7/20210729_P3_B8_WB7988-Plate3_S20_R1_001.fastq.gz 4642136949 FASTQ NA 64680036-719e-49bf-a651-840cc7c87ea7 storage1 C3N-02631.RNA-Seq.R1.T C3N-02631 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b817e43b-48e8-4cda-b993-5ea7428bdf5e/190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R1_001.fastq.gz 5128385989 FASTQ NA b817e43b-48e8-4cda-b993-5ea7428bdf5e storage1 @@ -9121,37 +8679,25 @@ C3N-02681.RNA-Seq.R1.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-02681.RNA-Seq.R1.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9a4c580-e93e-4331-bcd2-26bd9f24d024/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ NA a9a4c580-e93e-4331-bcd2-26bd9f24d024 storage1 C3N-02681.RNA-Seq.R2.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17f81101-60cd-4f3f-905c-776206e75ed1/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ NA 17f81101-60cd-4f3f-905c-776206e75ed1 storage1 C3N-02681.RNA-Seq.R2.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17f81101-60cd-4f3f-905c-776206e75ed1/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ NA 17f81101-60cd-4f3f-905c-776206e75ed1 storage1 -C3N-02681.WGS.N C3N-02681 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84be52db-65d0-4a40-9707-a7a31938a2b4/CPT0224890002.WholeGenome.RP-2158.bam 29513597556 BAM hg19 84be52db-65d0-4a40-9707-a7a31938a2b4 storage1 C3N-02681.WGS.N.hg38 C3N-02681 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc1f6717-d9aa-4711-a859-63dfbebbb225/64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wgs_gdc_realn.bam 87927682035 BAM hg38 fc1f6717-d9aa-4711-a859-63dfbebbb225 storage1 -C3N-02681.WGS.T C3N-02681 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6e95ce9-5c17-42a4-ad5f-7fd62229b2f8/CPT0224870006.WholeGenome.RP-2158.bam 21588349176 BAM hg19 d6e95ce9-5c17-42a4-ad5f-7fd62229b2f8 storage1 C3N-02681.WGS.T.hg38 C3N-02681 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd143d44-a8c3-4f15-93c8-df50ef08f406/f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wgs_gdc_realn.bam 62459496300 BAM hg38 fd143d44-a8c3-4f15-93c8-df50ef08f406 storage1 -C3N-02681.WXS.N C3N-02681 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e3323b4-5822-4ae6-b67d-5fd328904d51/CPT0224890002.WholeExome.RP-1303.bam 22672044861 BAM hg19 9e3323b4-5822-4ae6-b67d-5fd328904d51 storage1 C3N-02681.WXS.N.hg38 C3N-02681 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dee4a31-a455-4094-9bca-8c5728420d08/64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wxs_gdc_realn.bam 30409997212 BAM hg38 1dee4a31-a455-4094-9bca-8c5728420d08 storage1 -C3N-02681.WXS.T C3N-02681 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21f33ee6-8a02-4c89-ad5f-1236f2b1b8d0/CPT0224870006.WholeExome.RP-1303.bam 21755322913 BAM hg19 21f33ee6-8a02-4c89-ad5f-1236f2b1b8d0 storage1 C3N-02681.WXS.T.hg38 C3N-02681 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ea35233-7d7a-4a6a-ad94-c9be14124207/f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wxs_gdc_realn.bam 30168751979 BAM hg38 6ea35233-7d7a-4a6a-ad94-c9be14124207 storage1 C3N-02682.RNA-Seq.R1.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdabb589-3cd2-4b0d-9710-b951fc336806/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ NA bdabb589-3cd2-4b0d-9710-b951fc336806 storage1 C3N-02682.RNA-Seq.R1.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdabb589-3cd2-4b0d-9710-b951fc336806/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ NA bdabb589-3cd2-4b0d-9710-b951fc336806 storage1 C3N-02682.RNA-Seq.R2.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c36b01fb-a764-4899-8eaa-7df412ad8c7b/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ NA c36b01fb-a764-4899-8eaa-7df412ad8c7b storage1 C3N-02682.RNA-Seq.R2.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c36b01fb-a764-4899-8eaa-7df412ad8c7b/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ NA c36b01fb-a764-4899-8eaa-7df412ad8c7b storage1 -C3N-02682.WGS.N C3N-02682 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0ea8630-6e1c-4904-98a2-7c2772da1ed7/CPT0224920002.WholeGenome.RP-2158.bam 24539748739 BAM hg19 f0ea8630-6e1c-4904-98a2-7c2772da1ed7 storage1 C3N-02682.WGS.N.hg38 C3N-02682 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2771f873-7104-4a2f-a186-ee4634ea8b5d/5854cf9a-665a-48c0-a765-43727b62ae6d_wgs_gdc_realn.bam 73004266622 BAM hg38 2771f873-7104-4a2f-a186-ee4634ea8b5d storage1 -C3N-02682.WGS.T C3N-02682 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d07b3f98-fbba-4f88-8cd4-05b6b60fa2f4/CPT0224900006.WholeGenome.RP-2158.bam 27140589506 BAM hg19 d07b3f98-fbba-4f88-8cd4-05b6b60fa2f4 storage1 C3N-02682.WGS.T.hg38 C3N-02682 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b805c3d4-0636-483f-ab8b-747e130cafff/a96f6a16-6c6d-446b-8545-571072fd312a_wgs_gdc_realn.bam 79473733003 BAM hg38 b805c3d4-0636-483f-ab8b-747e130cafff storage1 -C3N-02682.WXS.N C3N-02682 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a49f2a7e-630a-4dc6-b2d6-b1ae75d1e82b/CPT0224920002.WholeExome.RP-1303.bam 32308755616 BAM hg19 a49f2a7e-630a-4dc6-b2d6-b1ae75d1e82b storage1 C3N-02682.WXS.N.hg38 C3N-02682 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a53e18d-9895-42a2-9ec6-31f7bb5fcb77/5854cf9a-665a-48c0-a765-43727b62ae6d_wxs_gdc_realn.bam 44410389015 BAM hg38 8a53e18d-9895-42a2-9ec6-31f7bb5fcb77 storage1 -C3N-02682.WXS.T C3N-02682 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/685fc795-d8a6-44db-9946-6abf67a1ea35/CPT0224900006.WholeExome.RP-1303.bam 31079844576 BAM hg19 685fc795-d8a6-44db-9946-6abf67a1ea35 storage1 C3N-02682.WXS.T.hg38 C3N-02682 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/307e94af-7463-4cec-a9e3-8f89ec1713a2/a96f6a16-6c6d-446b-8545-571072fd312a_wxs_gdc_realn.bam 41646001362 BAM hg38 307e94af-7463-4cec-a9e3-8f89ec1713a2 storage1 C3N-02683.RNA-Seq.R1.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f88b71c6-807d-45d8-bb45-d6f1adb722e4/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ NA f88b71c6-807d-45d8-bb45-d6f1adb722e4 storage1 C3N-02683.RNA-Seq.R1.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f88b71c6-807d-45d8-bb45-d6f1adb722e4/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ NA f88b71c6-807d-45d8-bb45-d6f1adb722e4 storage1 C3N-02683.RNA-Seq.R2.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86f73dc2-f0b2-4857-9873-09673863a96a/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ NA 86f73dc2-f0b2-4857-9873-09673863a96a storage1 C3N-02683.RNA-Seq.R2.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86f73dc2-f0b2-4857-9873-09673863a96a/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ NA 86f73dc2-f0b2-4857-9873-09673863a96a storage1 -C3N-02683.WGS.N C3N-02683 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d2be077-64ee-4be0-934e-ffa2f0c44fb0/CPT0224950002.WholeGenome.RP-2158.bam 22007412977 BAM hg19 2d2be077-64ee-4be0-934e-ffa2f0c44fb0 storage1 C3N-02683.WGS.N.hg38 C3N-02683 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61819705-e22c-4d38-9cac-3d53f1d640fa/63e86eb1-34a0-4930-ab71-1e80bca277ed_wgs_gdc_realn.bam 67714893079 BAM hg38 61819705-e22c-4d38-9cac-3d53f1d640fa storage1 -C3N-02683.WGS.T C3N-02683 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6eced862-2a89-414c-bc4b-7c0d197bbe49/CPT0224930006.WholeGenome.RP-2158.bam 20774991918 BAM hg19 6eced862-2a89-414c-bc4b-7c0d197bbe49 storage1 C3N-02683.WGS.T.hg38 C3N-02683 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/126f97d8-c3e5-4676-87e4-f0e71791a784/17fb3ecc-d825-4e43-a854-3494772f2488_wgs_gdc_realn.bam 60609807639 BAM hg38 126f97d8-c3e5-4676-87e4-f0e71791a784 storage1 -C3N-02683.WXS.N C3N-02683 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/592cfbb3-28f9-49a9-832f-b583e604e6c6/CPT0224950002.WholeExome.RP-1303.bam 17787837151 BAM hg19 592cfbb3-28f9-49a9-832f-b583e604e6c6 storage1 C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0263ae2-aa97-470b-9b51-bb94d28b6edc/63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM hg38 d0263ae2-aa97-470b-9b51-bb94d28b6edc storage1 -C3N-02683.WXS.T C3N-02683 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/361c9812-014e-44d2-9ecd-453e0f9f99f8/CPT0224930006.WholeExome.RP-1303.bam 19826009056 BAM hg19 361c9812-014e-44d2-9ecd-453e0f9f99f8 storage1 C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69b5d037-e728-49dc-8fa6-ff955e5ace97/17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM hg38 69b5d037-e728-49dc-8fa6-ff955e5ace97 storage1 C3N-02684.RNA-Seq.R1.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9d5ecfa-3887-4f7c-876b-e7addf0fa54d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ NA e9d5ecfa-3887-4f7c-876b-e7addf0fa54d storage1 C3N-02684.RNA-Seq.R1.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9d5ecfa-3887-4f7c-876b-e7addf0fa54d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ NA e9d5ecfa-3887-4f7c-876b-e7addf0fa54d storage1 @@ -9345,82 +8891,50 @@ C3N-02769.RNA-Seq.chimeric.T.hg38 C3N-02769 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-02769.RNA-Seq.R1.T C3N-02769 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbcec998-f2ef-4566-bf1d-1ba58e3ec41b/181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R1_001.fastq.gz 3703368298 FASTQ NA cbcec998-f2ef-4566-bf1d-1ba58e3ec41b storage1 C3N-02769.RNA-Seq.R2.T C3N-02769 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40725a01-9dfe-4cc9-b8fd-93e06c474763/181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R2_001.fastq.gz 3963422980 FASTQ NA 40725a01-9dfe-4cc9-b8fd-93e06c474763 storage1 C3N-02769.RNA-Seq.transcriptome.T.hg38 C3N-02769 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c073706-b790-4325-be6e-65c1234ba58e/cbdd0de2-aa21-47e8-b052-b84f5764e9b3.rna_seq.transcriptome.gdc_realn.bam 9462125706 BAM hg38 3c073706-b790-4325-be6e-65c1234ba58e storage1 -C3N-02769.WGS.N C3N-02769 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86e332dd-384a-40f4-b6a1-691c9df72b2f/CPT0205620002.WholeGenome.RP-1303.bam 64625748534 BAM hg19 86e332dd-384a-40f4-b6a1-691c9df72b2f storage1 C3N-02769.WGS.N.hg38 C3N-02769 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c86fc2d-d1dc-44e3-8a3f-a6c8a0ec4811/676c0ccc-0273-4827-8d9a-4bf5e7af912c_wgs_gdc_realn.bam 93747243868 BAM hg38 4c86fc2d-d1dc-44e3-8a3f-a6c8a0ec4811 storage1 -C3N-02769.WGS.T C3N-02769 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fddbda1a-4f41-40b3-aabf-b0c117753fa1/CPT0205570009.WholeGenome.RP-1303.bam 64787894653 BAM hg19 fddbda1a-4f41-40b3-aabf-b0c117753fa1 storage1 C3N-02769.WGS.T.hg38 C3N-02769 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41f74072-2efe-4386-8eaf-af7e237a5210/050dc740-1aaa-40ad-82f6-c15b43a2975e_wgs_gdc_realn.bam 94824522937 BAM hg38 41f74072-2efe-4386-8eaf-af7e237a5210 storage1 -C3N-02769.WXS.N C3N-02769 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec1de81f-110b-412e-bfca-bea46c4e9451/CPT0205620002.WholeExome.RP-1303.bam 27666664087 BAM hg19 ec1de81f-110b-412e-bfca-bea46c4e9451 storage1 -C3N-02769.WXS.T C3N-02769 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a2074bb-9ec3-4f32-ac15-f5a79314a180/CPT0205570009.WholeExome.RP-1303.bam 28096687148 BAM hg19 6a2074bb-9ec3-4f32-ac15-f5a79314a180 storage1 C3N-02770.RNA-Seq.chimeric.T.hg38 C3N-02770 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a6bb3ea-0f7e-4247-a8fb-e38ac45eacb7/b51e3e42-f836-44d5-81a5-9d42669160a0.rna_seq.chimeric.gdc_realn.bam 37412876 BAM hg38 0a6bb3ea-0f7e-4247-a8fb-e38ac45eacb7 storage1 C3N-02770.RNA-Seq.R1.T C3N-02770 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f596c58-f44c-4a43-b9f7-f3caad62afda/180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R1_001.fastq.gz 3798161751 FASTQ NA 2f596c58-f44c-4a43-b9f7-f3caad62afda storage1 C3N-02770.RNA-Seq.R2.T C3N-02770 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30939cd9-df0f-496b-9e3e-72413f3cd919/180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R2_001.fastq.gz 3879586459 FASTQ NA 30939cd9-df0f-496b-9e3e-72413f3cd919 storage1 C3N-02770.RNA-Seq.transcriptome.T.hg38 C3N-02770 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19167f9d-0f5f-4886-956e-baf13eaeca25/b51e3e42-f836-44d5-81a5-9d42669160a0.rna_seq.transcriptome.gdc_realn.bam 9298118098 BAM hg38 19167f9d-0f5f-4886-956e-baf13eaeca25 storage1 -C3N-02770.WGS.N C3N-02770 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73c2d70d-5406-4628-a331-40bc2f68c62c/CPT0205730002.WholeGenome.RP-1303.bam 57041246095 BAM hg19 73c2d70d-5406-4628-a331-40bc2f68c62c storage1 C3N-02770.WGS.N.hg38 C3N-02770 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e5b6969-dfbf-4b57-8d15-d7d1fe9a4e85/d65d3c63-2d38-4f5d-bc55-24ecea87bd4a_wgs_gdc_realn.bam 82940467860 BAM hg38 2e5b6969-dfbf-4b57-8d15-d7d1fe9a4e85 storage1 -C3N-02770.WGS.T C3N-02770 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dab5872c-e9ad-4546-9247-0cbc88d3eed0/CPT0205670007.WholeGenome.RP-1303.bam 62311334890 BAM hg19 dab5872c-e9ad-4546-9247-0cbc88d3eed0 storage1 C3N-02770.WGS.T.hg38 C3N-02770 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe589dfe-5b7a-44fd-ab3c-61586bf9901b/0a1ff17e-ea71-4c3f-93dc-61f1e4a527a4_wgs_gdc_realn.bam 92032213243 BAM hg38 fe589dfe-5b7a-44fd-ab3c-61586bf9901b storage1 -C3N-02770.WXS.N C3N-02770 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d288da1c-504b-44b6-89bd-de0a8df59660/CPT0205730002.WholeExome.RP-1303.bam 26203373453 BAM hg19 d288da1c-504b-44b6-89bd-de0a8df59660 storage1 -C3N-02770.WXS.T C3N-02770 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04cffcfb-e7bd-4f32-8acb-a21272a7da6c/CPT0205670007.WholeExome.RP-1303.bam 28747589244 BAM hg19 04cffcfb-e7bd-4f32-8acb-a21272a7da6c storage1 C3N-02782.RNA-Seq.chimeric.T.hg38 C3N-02782 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c33707fe-8eb2-4f09-8b29-26853b7114aa/a903e311-9c72-4bf1-a0c1-27a9fa242b91.rna_seq.chimeric.gdc_realn.bam 131973894 BAM hg38 c33707fe-8eb2-4f09-8b29-26853b7114aa storage1 C3N-02782.RNA-Seq.R1.T C3N-02782 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d556ee9-fb15-4daf-a9c7-a9aa6ea0363c/181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R1_001.fastq.gz 3897476431 FASTQ NA 8d556ee9-fb15-4daf-a9c7-a9aa6ea0363c storage1 C3N-02782.RNA-Seq.R2.T C3N-02782 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a3cbab9-db7b-4383-be3a-5bcc22259575/181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4236088268 FASTQ NA 4a3cbab9-db7b-4383-be3a-5bcc22259575 storage1 C3N-02782.RNA-Seq.transcriptome.T.hg38 C3N-02782 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3007807-1319-4940-a7cd-3158c9f783ac/a903e311-9c72-4bf1-a0c1-27a9fa242b91.rna_seq.transcriptome.gdc_realn.bam 10042762742 BAM hg38 d3007807-1319-4940-a7cd-3158c9f783ac storage1 -C3N-02782.WGS.N C3N-02782 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d9ca192-dc4e-4d54-b48e-38b8354cbdca/CPT0205800002.WholeGenome.RP-1303.bam 61479019998 BAM hg19 2d9ca192-dc4e-4d54-b48e-38b8354cbdca storage1 C3N-02782.WGS.N.hg38 C3N-02782 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e3b93d6-8e8c-4fa4-89a1-004c6d032737/45512723-7706-4e43-aa40-d483af74b7a9_wgs_gdc_realn.bam 89558603666 BAM hg38 5e3b93d6-8e8c-4fa4-89a1-004c6d032737 storage1 -C3N-02782.WGS.T C3N-02782 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1c90346-e31f-4563-956a-fbc18965d00a/CPT0205780009.WholeGenome.RP-1303.bam 60586673010 BAM hg19 c1c90346-e31f-4563-956a-fbc18965d00a storage1 C3N-02782.WGS.T.hg38 C3N-02782 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ddf6a3d-d3fe-4d9c-af11-34d34525204d/15dabb25-eb64-454a-89cb-ebf80f2d9dcb_wgs_gdc_realn.bam 88779998417 BAM hg38 6ddf6a3d-d3fe-4d9c-af11-34d34525204d storage1 -C3N-02782.WXS.N C3N-02782 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61f9f295-e0d1-4350-aa33-1dbe1760ca14/CPT0205800002.WholeExome.RP-1303.bam 22100109478 BAM hg19 61f9f295-e0d1-4350-aa33-1dbe1760ca14 storage1 -C3N-02782.WXS.T C3N-02782 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbaf0843-d128-4c61-b784-a673e61f4bcf/CPT0205780009.WholeExome.RP-1303.bam 20767505801 BAM hg19 bbaf0843-d128-4c61-b784-a673e61f4bcf storage1 C3N-02783.RNA-Seq.chimeric.T.hg38 C3N-02783 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7faeaee4-e085-4ab8-9190-aacbd96cd2e6/704ca5be-cada-455b-8fe4-b84fccd79f86.rna_seq.chimeric.gdc_realn.bam 80372225 BAM hg38 7faeaee4-e085-4ab8-9190-aacbd96cd2e6 storage1 C3N-02783.RNA-Seq.R1.T C3N-02783 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3a28258-46f8-4363-98f0-72ce38f840c2/181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R1_001.fastq.gz 4153563527 FASTQ NA c3a28258-46f8-4363-98f0-72ce38f840c2 storage1 C3N-02783.RNA-Seq.R2.T C3N-02783 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/300ad88a-1572-4def-8832-9972ddf4c133/181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R2_001.fastq.gz 4420035565 FASTQ NA 300ad88a-1572-4def-8832-9972ddf4c133 storage1 C3N-02783.RNA-Seq.transcriptome.T.hg38 C3N-02783 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55808595-de8d-4717-83c8-38a0f8b6b8c9/704ca5be-cada-455b-8fe4-b84fccd79f86.rna_seq.transcriptome.gdc_realn.bam 10385999044 BAM hg38 55808595-de8d-4717-83c8-38a0f8b6b8c9 storage1 -C3N-02783.WGS.N C3N-02783 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be13a90f-4a0d-4e5f-aaa6-08f583b3f1eb/CPT0205950002.WholeGenome.RP-1303.bam 54585294438 BAM hg19 be13a90f-4a0d-4e5f-aaa6-08f583b3f1eb storage1 C3N-02783.WGS.N.hg38 C3N-02783 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0382203c-2b40-4e1c-ba95-a75bfc8347d2/d3bee3fd-bd2d-4191-ac63-a1f864f33004_wgs_gdc_realn.bam 79064217342 BAM hg38 0382203c-2b40-4e1c-ba95-a75bfc8347d2 storage1 -C3N-02783.WGS.T C3N-02783 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1425615-a9a7-4f39-8bba-64f9b2260ba9/CPT0205890009.WholeGenome.RP-1303.bam 64343853541 BAM hg19 b1425615-a9a7-4f39-8bba-64f9b2260ba9 storage1 C3N-02783.WGS.T.hg38 C3N-02783 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d214547-9d98-41d4-99b2-a95e1457c12e/924abd02-843a-4fa1-bec8-1a1ce627cd58_wgs_gdc_realn.bam 95551279923 BAM hg38 2d214547-9d98-41d4-99b2-a95e1457c12e storage1 -C3N-02783.WXS.N C3N-02783 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd74f383-abf3-46fd-9cfd-231a1f1b4e72/CPT0205950002.WholeExome.RP-1303.bam 23757707725 BAM hg19 bd74f383-abf3-46fd-9cfd-231a1f1b4e72 storage1 -C3N-02783.WXS.T C3N-02783 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/908fd006-739a-48d2-80b9-20bf18044f9d/CPT0205890009.WholeExome.RP-1303.bam 24721933582 BAM hg19 908fd006-739a-48d2-80b9-20bf18044f9d storage1 C3N-02784.RNA-Seq.chimeric.T.hg38 C3N-02784 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed9c89d-d7ee-45b0-a0cf-d8c94c5d82b2/7aea8bbf-ffc6-4c96-a47a-86b152df4b3d.rna_seq.chimeric.gdc_realn.bam 37180679 BAM hg38 1ed9c89d-d7ee-45b0-a0cf-d8c94c5d82b2 storage1 C3N-02784.RNA-Seq.R1.T C3N-02784 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94f26cd4-ffba-4908-ba59-695a852622d4/180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 3693628695 FASTQ NA 94f26cd4-ffba-4908-ba59-695a852622d4 storage1 C3N-02784.RNA-Seq.R2.T C3N-02784 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0b6edbc-145e-4aed-b3c0-64db111763c2/180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 3845497765 FASTQ NA e0b6edbc-145e-4aed-b3c0-64db111763c2 storage1 C3N-02784.RNA-Seq.transcriptome.T.hg38 C3N-02784 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/263e4b47-292c-4ce0-ab64-3aae463910a4/7aea8bbf-ffc6-4c96-a47a-86b152df4b3d.rna_seq.transcriptome.gdc_realn.bam 10291313626 BAM hg38 263e4b47-292c-4ce0-ab64-3aae463910a4 storage1 -C3N-02784.WGS.N C3N-02784 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31df1c04-e901-4b2d-ad1e-19f9f7f6589d/CPT0206060002.WholeGenome.RP-1303.bam 59440566323 BAM hg19 31df1c04-e901-4b2d-ad1e-19f9f7f6589d storage1 C3N-02784.WGS.N.hg38 C3N-02784 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acc13c17-4844-4ecd-88bd-a087db0726d9/7c5eb1a4-b218-4654-9c46-76f044f69aee_wgs_gdc_realn.bam 86077990346 BAM hg38 acc13c17-4844-4ecd-88bd-a087db0726d9 storage1 -C3N-02784.WGS.T C3N-02784 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/798426df-aa4e-405b-b0df-168c71d52d00/CPT0206000007.WholeGenome.RP-1303.bam 57951905117 BAM hg19 798426df-aa4e-405b-b0df-168c71d52d00 storage1 C3N-02784.WGS.T.hg38 C3N-02784 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/547b44f0-795d-4d30-b3ab-1af520a2330f/42ab100b-26f3-4f26-8be8-ffc20930eb85_wgs_gdc_realn.bam 84594039280 BAM hg38 547b44f0-795d-4d30-b3ab-1af520a2330f storage1 -C3N-02784.WXS.N C3N-02784 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/836008ed-f81b-40f9-91ca-466b4d907194/CPT0206060002.WholeExome.RP-1303.bam 24309529081 BAM hg19 836008ed-f81b-40f9-91ca-466b4d907194 storage1 -C3N-02784.WXS.T C3N-02784 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee06966a-7656-422a-a65d-27e787a99171/CPT0206000007.WholeExome.RP-1303.bam 24492515196 BAM hg19 ee06966a-7656-422a-a65d-27e787a99171 storage1 C3N-02785.RNA-Seq.chimeric.T.hg38 C3N-02785 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e76f8a3-c1b0-4878-aec7-d288637f776f/bef9e2fc-c740-4622-8414-8047553f23dd.rna_seq.chimeric.gdc_realn.bam 139211539 BAM hg38 0e76f8a3-c1b0-4878-aec7-d288637f776f storage1 C3N-02785.RNA-Seq.R1.T C3N-02785 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/705ac8ac-ceeb-4500-a7f5-e5dc71df23ca/181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R1_001.fastq.gz 4034452742 FASTQ NA 705ac8ac-ceeb-4500-a7f5-e5dc71df23ca storage1 C3N-02785.RNA-Seq.R2.T C3N-02785 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb204a8f-a4ac-41da-87dd-661ac14d13cd/181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R2_001.fastq.gz 3955844270 FASTQ NA eb204a8f-a4ac-41da-87dd-661ac14d13cd storage1 C3N-02785.RNA-Seq.transcriptome.T.hg38 C3N-02785 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec4022a2-77ac-4ac1-987d-8756acc3c32c/bef9e2fc-c740-4622-8414-8047553f23dd.rna_seq.transcriptome.gdc_realn.bam 10001624493 BAM hg38 ec4022a2-77ac-4ac1-987d-8756acc3c32c storage1 -C3N-02785.WGS.N C3N-02785 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e96a4030-bab1-4bde-80d5-ec9e5fcd4fcb/CPT0206170002.WholeGenome.RP-1303.bam 57158824290 BAM hg19 e96a4030-bab1-4bde-80d5-ec9e5fcd4fcb storage1 C3N-02785.WGS.N.hg38 C3N-02785 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac65cceb-d9c0-4837-a9bc-b7bf0540abac/f5c9474a-3ec0-4252-bcc4-9d4c12ccb733_wgs_gdc_realn.bam 83206373736 BAM hg38 ac65cceb-d9c0-4837-a9bc-b7bf0540abac storage1 -C3N-02785.WGS.T C3N-02785 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abb8615d-c77f-4122-9ffd-218307d5e1b0/CPT0206110009.WholeGenome.RP-1303.bam 58209455529 BAM hg19 abb8615d-c77f-4122-9ffd-218307d5e1b0 storage1 C3N-02785.WGS.T.hg38 C3N-02785 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/055c8d86-e4a5-4972-acf9-10406750f8fb/61b9c50a-acd5-420b-8cae-914dd6c29a66_wgs_gdc_realn.bam 84501317011 BAM hg38 055c8d86-e4a5-4972-acf9-10406750f8fb storage1 -C3N-02785.WXS.N C3N-02785 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be3bbac8-feaa-459e-a38e-5108f67340ff/CPT0206170002.WholeExome.RP-1303.bam 29454076983 BAM hg19 be3bbac8-feaa-459e-a38e-5108f67340ff storage1 -C3N-02785.WXS.T C3N-02785 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f2e7e8c-a285-47a4-a375-054b4d11794f/CPT0206110009.WholeExome.RP-1303.bam 23527117043 BAM hg19 6f2e7e8c-a285-47a4-a375-054b4d11794f storage1 C3N-02786.RNA-Seq.chimeric.T.hg38 C3N-02786 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c71b4b0-69ec-4bfd-bd0d-33976cf06692/d4a3f0d9-74eb-4d3a-8866-31261e0c3bcd.rna_seq.chimeric.gdc_realn.bam 44663714 BAM hg38 6c71b4b0-69ec-4bfd-bd0d-33976cf06692 storage1 C3N-02786.RNA-Seq.R1.T C3N-02786 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66a24337-0fb5-41bb-bf11-2fcb9a06f88e/180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R1_001.fastq.gz 4067842049 FASTQ NA 66a24337-0fb5-41bb-bf11-2fcb9a06f88e storage1 C3N-02786.RNA-Seq.R2.T C3N-02786 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fd2a712-9c61-4898-8ead-f530d7757699/180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R2_001.fastq.gz 4274543264 FASTQ NA 6fd2a712-9c61-4898-8ead-f530d7757699 storage1 C3N-02786.RNA-Seq.transcriptome.T.hg38 C3N-02786 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99173c08-d8f3-4d83-a4ec-1bfc6047baac/d4a3f0d9-74eb-4d3a-8866-31261e0c3bcd.rna_seq.transcriptome.gdc_realn.bam 9064042414 BAM hg38 99173c08-d8f3-4d83-a4ec-1bfc6047baac storage1 -C3N-02786.WGS.N C3N-02786 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9463ccfb-46b1-4a4a-b78f-ecafd6281e95/CPT0206280002.WholeGenome.RP-1303.bam 61607903575 BAM hg19 9463ccfb-46b1-4a4a-b78f-ecafd6281e95 storage1 C3N-02786.WGS.N.hg38 C3N-02786 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8311c988-d841-4323-a7d2-dae23167d9dd/66d7fa25-dd36-444f-be45-50698701694a_wgs_gdc_realn.bam 89406270565 BAM hg38 8311c988-d841-4323-a7d2-dae23167d9dd storage1 -C3N-02786.WGS.T C3N-02786 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ebce501-a905-4c5c-87af-b560f1aefecf/CPT0206230006.WholeGenome.RP-1303.bam 62206339052 BAM hg19 8ebce501-a905-4c5c-87af-b560f1aefecf storage1 C3N-02786.WGS.T.hg38 C3N-02786 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09a5afba-92a9-4212-8027-41a7474e2b71/b169e6e6-a391-4fe4-853c-5b74726d30b5_wgs_gdc_realn.bam 91154226131 BAM hg38 09a5afba-92a9-4212-8027-41a7474e2b71 storage1 -C3N-02786.WXS.N C3N-02786 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89d26971-bc6d-4f04-a8a1-3b40a63e89c6/CPT0206280002.WholeExome.RP-1303.bam 22670789223 BAM hg19 89d26971-bc6d-4f04-a8a1-3b40a63e89c6 storage1 -C3N-02786.WXS.T C3N-02786 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4aaf1a8b-99be-434e-ac59-5a5a2f2a864a/CPT0206230006.WholeExome.RP-1303.bam 27544379285 BAM hg19 4aaf1a8b-99be-434e-ac59-5a5a2f2a864a storage1 C3N-02788.RNA-Seq.chimeric.T.RRNA_rkM095p.hg38 C3N-02788 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a7f6c48-20e4-440e-a6d0-588c4df1c6ff/7dc13510-8ae4-413e-9cb4-dcfde72db414.rna_seq.chimeric.gdc_realn.bam 59833911 BAM hg38 5a7f6c48-20e4-440e-a6d0-588c4df1c6ff storage1 C3N-02788.RNA-Seq.R1.T.RRNA_rkM095p C3N-02788 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7bf21101-629d-4259-9f38-bfe43c0d53fc/190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R1_001.fastq.gz 4684053431 FASTQ NA 7bf21101-629d-4259-9f38-bfe43c0d53fc storage1 C3N-02788.RNA-Seq.R2.T.RRNA_rkM095p C3N-02788 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9dca933-ce7f-4c10-baf2-71e0ac9d55b4/190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R2_001.fastq.gz 5280082406 FASTQ NA a9dca933-ce7f-4c10-baf2-71e0ac9d55b4 storage1 C3N-02788.RNA-Seq.transcriptome.T.RRNA_rkM095p.hg38 C3N-02788 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/472bc32a-24f4-4758-9979-5b5b24565e3e/7dc13510-8ae4-413e-9cb4-dcfde72db414.rna_seq.transcriptome.gdc_realn.bam 9374549081 BAM hg38 472bc32a-24f4-4758-9979-5b5b24565e3e storage1 -C3N-02788.WGS.N C3N-02788 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ade8f2ff-6eb1-4b41-aba0-911969d177c6/CPT0206390002.WholeGenome.RP-1303.bam 60760463962 BAM hg19 ade8f2ff-6eb1-4b41-aba0-911969d177c6 storage1 C3N-02788.WGS.N.hg38 C3N-02788 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cee893d-bbe8-4f6b-a08f-e20512c97679/784b8eee-0d64-4a0c-bb26-694e63127598_wgs_gdc_realn.bam 88933770661 BAM hg38 9cee893d-bbe8-4f6b-a08f-e20512c97679 storage1 -C3N-02788.WGS.T.RDNA_o26YyKX C3N-02788 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a6c06bd-b790-442e-8c91-4f8057a89275/CPT0206330006.WholeGenome.RP-1303.bam 64019815472 BAM hg19 1a6c06bd-b790-442e-8c91-4f8057a89275 storage1 C3N-02788.WGS.T.RDNA_o26YyKX.hg38 C3N-02788 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2929e7c9-d068-40e3-b84d-071b68f43ca8/7abd92d0-2c6c-4fe7-a411-32349d22d560_wgs_gdc_realn.bam 91320411824 BAM hg38 2929e7c9-d068-40e3-b84d-071b68f43ca8 storage1 -C3N-02788.WXS.N C3N-02788 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8ead195-f58b-4e4b-af3f-e9db12f423a2/CPT0206390002.WholeExome.RP-1303.bam 31488877550 BAM hg19 e8ead195-f58b-4e4b-af3f-e9db12f423a2 storage1 -C3N-02788.WXS.T.RDNA_o26YyKX C3N-02788 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/963d1033-d6d6-43c9-9cdb-86dffd33b25f/CPT0206330006.WholeExome.RP-1303.bam 24969782426 BAM hg19 963d1033-d6d6-43c9-9cdb-86dffd33b25f storage1 C3N-02789.RNA-Seq.R1.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4353b2fe-1b21-4707-b307-e3d8cadc9c4e/190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ NA 4353b2fe-1b21-4707-b307-e3d8cadc9c4e storage1 C3N-02789.RNA-Seq.R1.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59cad0cc-d9ea-42f5-b61a-2f69b4d8593d/20210729_P3_D7_WB7988-Plate3_S43_R1_001.fastq.gz 4681302026 FASTQ NA 59cad0cc-d9ea-42f5-b61a-2f69b4d8593d storage1 C3N-02789.RNA-Seq.R2.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/918aaf2f-e742-4f07-ae31-805fa1810d60/190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R2_001.fastq.gz 4376535516 FASTQ NA 918aaf2f-e742-4f07-ae31-805fa1810d60 storage1 @@ -9624,25 +9138,17 @@ C3N-03001.RNA-Seq.R1.T C3N-03001 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03001.RNA-Seq.R1.T C3N-03001 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b916065-70cc-431f-923f-2e2305f9491b/200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 3761960687 FASTQ NA 1b916065-70cc-431f-923f-2e2305f9491b storage1 C3N-03001.RNA-Seq.R2.T C3N-03001 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/634a6d31-e1f2-40a7-b9ee-b14c1965bb5d/200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ NA 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d storage1 C3N-03001.RNA-Seq.R2.T C3N-03001 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/634a6d31-e1f2-40a7-b9ee-b14c1965bb5d/200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ NA 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d storage1 -C3N-03001.WGS.N C3N-03001 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/680cef4f-4ec7-41c7-91cf-507eb20e1dc9/CPT0248310002.WholeGenome.RP-2158.bam 25352497557 BAM hg19 680cef4f-4ec7-41c7-91cf-507eb20e1dc9 storage1 C3N-03001.WGS.N.hg38 C3N-03001 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d094a1b6-d186-450d-8cd9-4581a517d22b/b1328107-60b3-4caa-9aeb-4a20ff059f1b_wgs_gdc_realn.bam 74657515788 BAM hg38 d094a1b6-d186-450d-8cd9-4581a517d22b storage1 -C3N-03001.WGS.T C3N-03001 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6006e857-617d-4e76-b433-d456e450cc8c/CPT0248230006.WholeGenome.RP-2158.bam 20492866379 BAM hg19 6006e857-617d-4e76-b433-d456e450cc8c storage1 C3N-03001.WGS.T.hg38 C3N-03001 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08172ae7-bf7e-4d27-bd8e-4154e1445f55/48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wgs_gdc_realn.bam 60902173210 BAM hg38 08172ae7-bf7e-4d27-bd8e-4154e1445f55 storage1 -C3N-03001.WXS.N C3N-03001 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72bcb59e-8385-49e3-91c7-52c7e2cd53e9/CPT0248310002.WholeExome.RP-1303.bam 20959866756 BAM hg19 72bcb59e-8385-49e3-91c7-52c7e2cd53e9 storage1 C3N-03001.WXS.N.hg38 C3N-03001 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e69c87c-2a68-409e-832e-ea3516ed05d0/b1328107-60b3-4caa-9aeb-4a20ff059f1b_wxs_gdc_realn.bam 28582690598 BAM hg38 6e69c87c-2a68-409e-832e-ea3516ed05d0 storage1 -C3N-03001.WXS.T C3N-03001 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2be1cd42-fb56-4660-93fd-8b16cf116f9e/CPT0248230006.WholeExome.RP-1303.bam 18881735796 BAM hg19 2be1cd42-fb56-4660-93fd-8b16cf116f9e storage1 C3N-03001.WXS.T.hg38 C3N-03001 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e07bc8c-5075-4347-866e-921ec2ff009f/48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wxs_gdc_realn.bam 26465631028 BAM hg38 8e07bc8c-5075-4347-866e-921ec2ff009f storage1 C3N-03003.RNA-Seq.R1.T C3N-03003 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c465924b-72b1-4df5-858a-bdfdc8c0f484/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ NA c465924b-72b1-4df5-858a-bdfdc8c0f484 storage1 C3N-03003.RNA-Seq.R1.T C3N-03003 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c465924b-72b1-4df5-858a-bdfdc8c0f484/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ NA c465924b-72b1-4df5-858a-bdfdc8c0f484 storage1 C3N-03003.RNA-Seq.R2.T C3N-03003 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b68baa4c-eac8-4981-8f81-936605755b5d/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ NA b68baa4c-eac8-4981-8f81-936605755b5d storage1 C3N-03003.RNA-Seq.R2.T C3N-03003 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b68baa4c-eac8-4981-8f81-936605755b5d/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ NA b68baa4c-eac8-4981-8f81-936605755b5d storage1 -C3N-03003.WGS.N C3N-03003 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afaa9fdc-4de9-4cc5-9cfb-9d5203ce917d/CPT0225800002.WholeGenome.RP-2158.bam 21861962263 BAM hg19 afaa9fdc-4de9-4cc5-9cfb-9d5203ce917d storage1 C3N-03003.WGS.N.hg38 C3N-03003 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/daaee450-05a7-4451-a8bc-466d4cc6a324/201dfe54-d739-488d-9e80-1ced195f0d9b_wgs_gdc_realn.bam 66348324743 BAM hg38 daaee450-05a7-4451-a8bc-466d4cc6a324 storage1 -C3N-03003.WGS.T C3N-03003 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f9259aa-8bab-4474-a691-dee8dad78929/CPT0224960006.WholeGenome.RP-2158.bam 21329109644 BAM hg19 8f9259aa-8bab-4474-a691-dee8dad78929 storage1 C3N-03003.WGS.T.hg38 C3N-03003 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b3e7ab1-5148-4ffa-bc1a-fd0224d0ab94/0aca7784-683e-4437-b212-755d450109a4_wgs_gdc_realn.bam 59786107963 BAM hg38 1b3e7ab1-5148-4ffa-bc1a-fd0224d0ab94 storage1 -C3N-03003.WXS.N C3N-03003 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4593faf-c37d-4df9-96a5-54b179acbae5/CPT0225800002.WholeExome.RP-1303.bam 26282388701 BAM hg19 c4593faf-c37d-4df9-96a5-54b179acbae5 storage1 C3N-03003.WXS.N.hg38 C3N-03003 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5df19e6-aad5-4a50-a453-b0d21278ea73/201dfe54-d739-488d-9e80-1ced195f0d9b_wxs_gdc_realn.bam 36035172361 BAM hg38 e5df19e6-aad5-4a50-a453-b0d21278ea73 storage1 -C3N-03003.WXS.T C3N-03003 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52530a4d-7ae0-4fa0-b4a4-a0a9667a4878/CPT0224960006.WholeExome.RP-1303.bam 23932320080 BAM hg19 52530a4d-7ae0-4fa0-b4a4-a0a9667a4878 storage1 C3N-03003.WXS.T.hg38 C3N-03003 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14918c16-a4fb-48c0-896b-6f09dbdaae00/0aca7784-683e-4437-b212-755d450109a4_wxs_gdc_realn.bam 33401908422 BAM hg38 14918c16-a4fb-48c0-896b-6f09dbdaae00 storage1 C3N-03005.RNA-Seq.R1.T C3N-03005 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac/190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R1_001.fastq.gz 3900170966 FASTQ NA 1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac storage1 C3N-03005.RNA-Seq.R1.T C3N-03005 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d47901f-2b7d-4329-9061-b3fda249ebde/20210729_P3_G4_WB7988-Plate3_S76_R1_001.fastq.gz 5615640760 FASTQ NA 2d47901f-2b7d-4329-9061-b3fda249ebde storage1 @@ -9718,13 +9224,9 @@ C3N-03025.RNA-Seq.R1.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03025.RNA-Seq.R1.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a12152f-6b09-4e4b-87a2-deac64ea83a1/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ NA 6a12152f-6b09-4e4b-87a2-deac64ea83a1 storage1 C3N-03025.RNA-Seq.R2.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ff9e556-fa20-4d91-8dc9-b02275783e96/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ NA 7ff9e556-fa20-4d91-8dc9-b02275783e96 storage1 C3N-03025.RNA-Seq.R2.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ff9e556-fa20-4d91-8dc9-b02275783e96/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ NA 7ff9e556-fa20-4d91-8dc9-b02275783e96 storage1 -C3N-03025.WGS.N C3N-03025 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59fa4708-fd8f-4566-9d94-f62826f236be/CPT0225860002.WholeGenome.RP-2158.bam 25773776013 BAM hg19 59fa4708-fd8f-4566-9d94-f62826f236be storage1 C3N-03025.WGS.N.hg38 C3N-03025 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17dc03a1-1c8b-464e-b09e-4c6824d6ae7d/e7c50500-cae7-47da-be3b-86c64714d880_wgs_gdc_realn.bam 76319967086 BAM hg38 17dc03a1-1c8b-464e-b09e-4c6824d6ae7d storage1 -C3N-03025.WGS.T C3N-03025 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fee1ecb4-d543-4fe1-acca-0bd9270d3a36/CPT0225840006.WholeGenome.RP-2158.bam 27751823683 BAM hg19 fee1ecb4-d543-4fe1-acca-0bd9270d3a36 storage1 C3N-03025.WGS.T.hg38 C3N-03025 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e5ce309-2ebb-46ee-abf4-570a730bc5b8/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wgs_gdc_realn.bam 82837102023 BAM hg38 6e5ce309-2ebb-46ee-abf4-570a730bc5b8 storage1 -C3N-03025.WXS.N C3N-03025 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dcf63ed-7c2c-4759-8060-988e9dd64f99/CPT0225860002.WholeExome.RP-1303.bam 25504805473 BAM hg19 5dcf63ed-7c2c-4759-8060-988e9dd64f99 storage1 C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4/e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM hg38 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 storage1 -C3N-03025.WXS.T C3N-03025 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5e8f3a9-dad6-4e6d-ba0a-a5b93814283f/CPT0225840006.WholeExome.RP-1303.bam 18505020552 BAM hg19 b5e8f3a9-dad6-4e6d-ba0a-a5b93814283f storage1 C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/325ed822-683e-457a-9687-2ade3fcd0bfe/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM hg38 325ed822-683e-457a-9687-2ade3fcd0bfe storage1 C3N-03026.RNA-Seq.R1.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cf7ffc2-885e-4bc9-94fb-7d88e689ec88/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ NA 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 storage1 C3N-03026.RNA-Seq.R1.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cf7ffc2-885e-4bc9-94fb-7d88e689ec88/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ NA 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 storage1 @@ -9820,12 +9322,8 @@ C3N-03070.RNA-Seq.chimeric.T.hg38 C3N-03070 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-03070.RNA-Seq.R1.T C3N-03070 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66d938ca-8d17-45b9-834d-a289ed685049/190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R1_001.fastq.gz 4511670372 FASTQ NA 66d938ca-8d17-45b9-834d-a289ed685049 storage1 C3N-03070.RNA-Seq.R2.T C3N-03070 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff/190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R2_001.fastq.gz 4305537656 FASTQ NA 6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff storage1 C3N-03070.RNA-Seq.transcriptome.T.hg38 C3N-03070 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/223c149c-69b7-4288-ad29-79135ab328ff/b1caea76-fffa-42a4-8147-c0135dc5368e.rna_seq.transcriptome.gdc_realn.bam 9446797803 BAM hg38 223c149c-69b7-4288-ad29-79135ab328ff storage1 -C3N-03070.WGS.N C3N-03070 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec5a3f84-7596-43cf-9be4-b0b4908694c7/CPT0209010002.WholeGenome.RP-1303.bam 60352253574 BAM hg19 ec5a3f84-7596-43cf-9be4-b0b4908694c7 storage1 C3N-03070.WGS.N.hg38 C3N-03070 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b25f0f8-dc89-4946-ac13-cdde820a8595/13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wgs_gdc_realn.bam 87863624867 BAM hg38 3b25f0f8-dc89-4946-ac13-cdde820a8595 storage1 -C3N-03070.WGS.T C3N-03070 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59777ce9-ca51-4abc-88d1-e0dde527fdfe/CPT0208980006.WholeGenome.RP-1303.bam 58819746560 BAM hg19 59777ce9-ca51-4abc-88d1-e0dde527fdfe storage1 C3N-03070.WGS.T.hg38 C3N-03070 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/067b2d03-0e13-4df8-be26-507de3e5b09d/3d3a5916-ded3-4257-84d2-b71a75547112_wgs_gdc_realn.bam 86267479695 BAM hg38 067b2d03-0e13-4df8-be26-507de3e5b09d storage1 -C3N-03070.WXS.N C3N-03070 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfbe43e5-ff4a-48b3-8b4e-109bb98da402/CPT0209010002.WholeExome.RP-1303.bam 25048648491 BAM hg19 dfbe43e5-ff4a-48b3-8b4e-109bb98da402 storage1 -C3N-03070.WXS.T C3N-03070 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c1c3b19-dc60-42a3-9160-576c41d78609/CPT0208980006.WholeExome.RP-1303.bam 27827864765 BAM hg19 8c1c3b19-dc60-42a3-9160-576c41d78609 storage1 C3N-03072.RNA-Seq.R1.T C3N-03072 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64aababb-a390-4737-9537-19167b6cba6a/190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R1_001.fastq.gz 3100065422 FASTQ NA 64aababb-a390-4737-9537-19167b6cba6a storage1 C3N-03072.RNA-Seq.R2.T C3N-03072 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3afce0c4-ac82-4f80-b237-1a5fd859f8d6/190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R2_001.fastq.gz 3084681041 FASTQ NA 3afce0c4-ac82-4f80-b237-1a5fd859f8d6 storage1 C3N-03072.WGS.N.hg38 C3N-03072 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f/d1fe7625-edef-4de3-8580-c5a1e327b334_wgs_gdc_realn.bam 151186957717 BAM hg38 82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f storage1 @@ -9863,12 +9361,8 @@ C3N-03088.RNA-Seq.chimeric.T.hg38 C3N-03088 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-03088.RNA-Seq.R1.T C3N-03088 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a007bb3-c970-4fc3-80d3-4511ef0c140c/190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R1_001.fastq.gz 4440225897 FASTQ NA 6a007bb3-c970-4fc3-80d3-4511ef0c140c storage1 C3N-03088.RNA-Seq.R2.T C3N-03088 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c28802fe-5b81-45ae-878d-deaab3c7e4b7/190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R2_001.fastq.gz 4652682779 FASTQ NA c28802fe-5b81-45ae-878d-deaab3c7e4b7 storage1 C3N-03088.RNA-Seq.transcriptome.T.hg38 C3N-03088 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91cdff11-e649-4462-93ff-92fbb236e4e1/56e1db9b-f703-4cc3-a0eb-a9fce85f0fad.rna_seq.transcriptome.gdc_realn.bam 11568168151 BAM hg38 91cdff11-e649-4462-93ff-92fbb236e4e1 storage1 -C3N-03088.WGS.N C3N-03088 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a00e6ef8-f6d9-4b54-b112-e7382e9e44fb/CPT0209480002.WholeGenome.RP-1303.bam 65777731967 BAM hg19 a00e6ef8-f6d9-4b54-b112-e7382e9e44fb storage1 C3N-03088.WGS.N.hg38 C3N-03088 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9238b256-117e-46b9-9f38-b6a08a09cc30/36c1c91c-84e9-4021-819e-ccb9d6f8f637_wgs_gdc_realn.bam 97201246792 BAM hg38 9238b256-117e-46b9-9f38-b6a08a09cc30 storage1 -C3N-03088.WGS.T C3N-03088 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/669092bb-9223-40b4-8f86-73c885f1528c/CPT0209440005.WholeGenome.RP-1303.bam 57702578123 BAM hg19 669092bb-9223-40b4-8f86-73c885f1528c storage1 C3N-03088.WGS.T.hg38 C3N-03088 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2789d7b-483b-4c2f-a4cf-30313aefc7c4/ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wgs_gdc_realn.bam 85717530907 BAM hg38 e2789d7b-483b-4c2f-a4cf-30313aefc7c4 storage1 -C3N-03088.WXS.N C3N-03088 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ae5b299-448f-43b6-af6a-6650c971e85a/CPT0209480002.WholeExome.RP-1303.bam 25084469692 BAM hg19 3ae5b299-448f-43b6-af6a-6650c971e85a storage1 -C3N-03088.WXS.T C3N-03088 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f81003c5-29e0-4412-bdfa-d0b733b88980/CPT0209440005.WholeExome.RP-1303.bam 20499979983 BAM hg19 f81003c5-29e0-4412-bdfa-d0b733b88980 storage1 C3N-03092.RNA-Seq.R1.A C3N-03092 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0433577e-e787-4c63-adc1-2ef179880630/190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3744159218 FASTQ NA 0433577e-e787-4c63-adc1-2ef179880630 storage1 C3N-03092.RNA-Seq.R1.T C3N-03092 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5399bad-144d-41e8-85bb-d6fffb1c0576/190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3774654674 FASTQ NA d5399bad-144d-41e8-85bb-d6fffb1c0576 storage1 C3N-03092.RNA-Seq.R2.A C3N-03092 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1708f79-7f69-4f43-a21c-c33ae1360110/190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4132832278 FASTQ NA a1708f79-7f69-4f43-a21c-c33ae1360110 storage1 @@ -9893,62 +9387,38 @@ C3N-03180.RNA-Seq.chimeric.T.hg38 C3N-03180 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-03180.RNA-Seq.R1.T C3N-03180 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94910b4a-6541-4491-af24-64b4b5209f4e/181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R1_001.fastq.gz 3432824481 FASTQ NA 94910b4a-6541-4491-af24-64b4b5209f4e storage1 C3N-03180.RNA-Seq.R2.T C3N-03180 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3935ae0d-87c0-4ed0-88bd-fc1e45733f11/181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R2_001.fastq.gz 3531880668 FASTQ NA 3935ae0d-87c0-4ed0-88bd-fc1e45733f11 storage1 C3N-03180.RNA-Seq.transcriptome.T.hg38 C3N-03180 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad9685b5-8a0e-4c15-9f78-f91971fb839f/1b1f29e4-b1f6-4eac-95e3-680153f1edbe.rna_seq.transcriptome.gdc_realn.bam 8925031079 BAM hg38 ad9685b5-8a0e-4c15-9f78-f91971fb839f storage1 -C3N-03180.WGS.N C3N-03180 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a46c639-a598-441f-a78c-1b8b7226f35a/CPT0206500002.WholeGenome.RP-1303.bam 56557163572 BAM hg19 2a46c639-a598-441f-a78c-1b8b7226f35a storage1 C3N-03180.WGS.N.hg38 C3N-03180 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd46c594-18fb-4f74-8dc4-89ed1ebede3e/edf472d8-84a9-455a-86a1-2b6c5c087389_wgs_gdc_realn.bam 83598139567 BAM hg38 dd46c594-18fb-4f74-8dc4-89ed1ebede3e storage1 -C3N-03180.WGS.T C3N-03180 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e979c93-6f7e-4148-8810-515a19caf12b/CPT0206450009.WholeGenome.RP-1303.bam 80423535177 BAM hg19 2e979c93-6f7e-4148-8810-515a19caf12b storage1 C3N-03180.WGS.T.hg38 C3N-03180 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8fca0a4-a2da-4fea-9088-cea27065329e/5bee80df-adff-4e5a-bff0-dabf96ae046e_wgs_gdc_realn.bam 121502710116 BAM hg38 c8fca0a4-a2da-4fea-9088-cea27065329e storage1 -C3N-03180.WXS.N C3N-03180 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d487cf8-5fc2-40f6-9607-8fe141bb6b8e/CPT0206500002.WholeExome.RP-1303.bam 24836504611 BAM hg19 5d487cf8-5fc2-40f6-9607-8fe141bb6b8e storage1 -C3N-03180.WXS.T C3N-03180 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fd52954-bc14-4652-b33e-2568ea5493e7/CPT0206450009.WholeExome.RP-1303.bam 23652758191 BAM hg19 6fd52954-bc14-4652-b33e-2568ea5493e7 storage1 C3N-03182.RNA-Seq.chimeric.T.hg38 C3N-03182 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c7370dd-3f39-4059-a110-e110c06ce8da/c5aed1ba-f8b8-402e-adb8-12190340507c.rna_seq.chimeric.gdc_realn.bam 125837145 BAM hg38 8c7370dd-3f39-4059-a110-e110c06ce8da storage1 C3N-03182.RNA-Seq.R1.T C3N-03182 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16b89fae-b4cd-46f4-b073-7f97adf79742/181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R1_001.fastq.gz 3741947645 FASTQ NA 16b89fae-b4cd-46f4-b073-7f97adf79742 storage1 C3N-03182.RNA-Seq.R2.T C3N-03182 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa16efac-5164-4f11-986e-76fbdd660b5e/181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R2_001.fastq.gz 3772103440 FASTQ NA aa16efac-5164-4f11-986e-76fbdd660b5e storage1 C3N-03182.RNA-Seq.transcriptome.T.hg38 C3N-03182 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/720f0ea2-f364-4255-b9ef-0a3854ef3a29/c5aed1ba-f8b8-402e-adb8-12190340507c.rna_seq.transcriptome.gdc_realn.bam 9330035022 BAM hg38 720f0ea2-f364-4255-b9ef-0a3854ef3a29 storage1 -C3N-03182.WGS.N C3N-03182 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40083d23-e053-4774-a150-cd1bac2e5983/CPT0206610002.WholeGenome.RP-1303.bam 61463466398 BAM hg19 40083d23-e053-4774-a150-cd1bac2e5983 storage1 C3N-03182.WGS.N.hg38 C3N-03182 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ad31616-457b-466a-8225-106e6be6b948/169a9157-ea3d-4d12-896d-093c39862823_wgs_gdc_realn.bam 91728345679 BAM hg38 2ad31616-457b-466a-8225-106e6be6b948 storage1 -C3N-03182.WGS.T C3N-03182 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e017c82-5727-4ba4-ab60-b419f70de4fc/CPT0206560009.WholeGenome.RP-1303.bam 67489696700 BAM hg19 5e017c82-5727-4ba4-ab60-b419f70de4fc storage1 C3N-03182.WGS.T.hg38 C3N-03182 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0545fba-af1d-47e9-8c38-8fbf516625c0/dc765b05-ce52-46f4-a45c-200e98c13c17_wgs_gdc_realn.bam 102534668964 BAM hg38 e0545fba-af1d-47e9-8c38-8fbf516625c0 storage1 -C3N-03182.WXS.N C3N-03182 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e870346a-01da-4af0-ae28-25cf17862c03/CPT0206610002.WholeExome.RP-1303.bam 27044051742 BAM hg19 e870346a-01da-4af0-ae28-25cf17862c03 storage1 -C3N-03182.WXS.T C3N-03182 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1d2e75a-b005-4dc1-b2db-1ff93a07f416/CPT0206560009.WholeExome.RP-1303.bam 30467398549 BAM hg19 d1d2e75a-b005-4dc1-b2db-1ff93a07f416 storage1 C3N-03183.RNA-Seq.chimeric.T.hg38 C3N-03183 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e674087-2568-429f-aadf-55c6a321d8b1/10f4c6be-4e1b-4b2f-a021-abfc8680dafe.rna_seq.chimeric.gdc_realn.bam 46906728 BAM hg38 1e674087-2568-429f-aadf-55c6a321d8b1 storage1 C3N-03183.RNA-Seq.R1.T C3N-03183 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f18a4ee8-66b3-4796-9788-794458cfee84/180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R1_001.fastq.gz 4413991517 FASTQ NA f18a4ee8-66b3-4796-9788-794458cfee84 storage1 C3N-03183.RNA-Seq.R2.T C3N-03183 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e28d3399-6017-40b8-848e-83f9a99aceb1/180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R2_001.fastq.gz 4612215164 FASTQ NA e28d3399-6017-40b8-848e-83f9a99aceb1 storage1 C3N-03183.RNA-Seq.transcriptome.T.hg38 C3N-03183 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cda08806-8f1c-4cf1-8615-6df439320de0/10f4c6be-4e1b-4b2f-a021-abfc8680dafe.rna_seq.transcriptome.gdc_realn.bam 10698264868 BAM hg38 cda08806-8f1c-4cf1-8615-6df439320de0 storage1 -C3N-03183.WGS.N C3N-03183 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/024a0a62-fed0-416e-8de9-a6631482c173/CPT0206720002.WholeGenome.RP-1303.bam 71629700578 BAM hg19 024a0a62-fed0-416e-8de9-a6631482c173 storage1 C3N-03183.WGS.N.hg38 C3N-03183 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91e318ce-cf46-4d6e-9e6a-dcf893614ca8/294ad51c-8885-4fd9-9437-80f6d8f8c0d8_wgs_gdc_realn.bam 109199626484 BAM hg38 91e318ce-cf46-4d6e-9e6a-dcf893614ca8 storage1 -C3N-03183.WGS.T C3N-03183 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/325a6ce8-ea6f-46e0-aca8-cab60f92c8d0/CPT0206670007.WholeGenome.RP-1303.bam 67819115839 BAM hg19 325a6ce8-ea6f-46e0-aca8-cab60f92c8d0 storage1 C3N-03183.WGS.T.hg38 C3N-03183 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db8375c3-506d-44e6-914b-9bda5fb534c1/b977b0e2-6620-4b0b-8be6-0cb5d51e2157_wgs_gdc_realn.bam 103427956427 BAM hg38 db8375c3-506d-44e6-914b-9bda5fb534c1 storage1 -C3N-03183.WXS.N C3N-03183 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/784da77c-7c30-4cef-8002-fd86961ebb87/CPT0206720002.WholeExome.RP-1303.bam 22684384260 BAM hg19 784da77c-7c30-4cef-8002-fd86961ebb87 storage1 -C3N-03183.WXS.T C3N-03183 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b2278e3-d21b-4898-9330-e37c0b769466/CPT0206670007.WholeExome.RP-1303.bam 23460014114 BAM hg19 7b2278e3-d21b-4898-9330-e37c0b769466 storage1 C3N-03184.RNA-Seq.chimeric.T.hg38 C3N-03184 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e3e5fd6-df7c-4685-9b40-caf2e3a943d9/44c6fc56-1602-41b8-85fd-c54258f0e921.rna_seq.chimeric.gdc_realn.bam 291073563 BAM hg38 3e3e5fd6-df7c-4685-9b40-caf2e3a943d9 storage1 C3N-03184.RNA-Seq.R1.T C3N-03184 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c5ae7fc-2183-47f7-af45-9c07dc35bae7/181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4144799085 FASTQ NA 5c5ae7fc-2183-47f7-af45-9c07dc35bae7 storage1 C3N-03184.RNA-Seq.R2.T C3N-03184 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae17a1e8-ee58-47dd-987c-ae79b11f38e2/181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4535735535 FASTQ NA ae17a1e8-ee58-47dd-987c-ae79b11f38e2 storage1 C3N-03184.RNA-Seq.transcriptome.T.hg38 C3N-03184 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4632df0-316e-4a68-96b5-0ee67a3085f0/44c6fc56-1602-41b8-85fd-c54258f0e921.rna_seq.transcriptome.gdc_realn.bam 9173909670 BAM hg38 e4632df0-316e-4a68-96b5-0ee67a3085f0 storage1 -C3N-03184.WGS.N C3N-03184 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6901c856-f491-4b7d-84af-604abea50477/CPT0206830002.WholeGenome.RP-1303.bam 60404443966 BAM hg19 6901c856-f491-4b7d-84af-604abea50477 storage1 C3N-03184.WGS.N.hg38 C3N-03184 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6555a211-793e-44aa-8a93-5e82c66f40b4/e5a7f2ee-15f8-4c5b-8ea8-c0f57ab8f65d_wgs_gdc_realn.bam 90129244059 BAM hg38 6555a211-793e-44aa-8a93-5e82c66f40b4 storage1 -C3N-03184.WGS.T C3N-03184 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7a6fccb-02b4-471e-93fb-331c1a859cf4/CPT0206780009.WholeGenome.RP-1303.bam 58888584690 BAM hg19 b7a6fccb-02b4-471e-93fb-331c1a859cf4 storage1 C3N-03184.WGS.T.hg38 C3N-03184 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/edb32e91-88ec-41e3-ae0b-1b71c84a3f2e/96da1817-dec2-45c2-9ea7-f654ddebd97a_wgs_gdc_realn.bam 87615735537 BAM hg38 edb32e91-88ec-41e3-ae0b-1b71c84a3f2e storage1 -C3N-03184.WXS.N C3N-03184 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c89e6524-1135-494a-b676-a2f5d2714655/CPT0206830002.WholeExome.RP-1303.bam 25983463240 BAM hg19 c89e6524-1135-494a-b676-a2f5d2714655 storage1 -C3N-03184.WXS.T C3N-03184 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fddc640d-3776-48cd-abcc-c2f69bc07883/CPT0206780009.WholeExome.RP-1303.bam 23915621839 BAM hg19 fddc640d-3776-48cd-abcc-c2f69bc07883 storage1 C3N-03186.RNA-Seq.chimeric.T.hg38 C3N-03186 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d843f793-6acf-449b-b1db-47444886fd52/3e4f82c1-fb53-4522-9ae5-6a5034b96bed.rna_seq.chimeric.gdc_realn.bam 224483867 BAM hg38 d843f793-6acf-449b-b1db-47444886fd52 storage1 C3N-03186.RNA-Seq.R1.T C3N-03186 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87bab1d0-10a6-491d-8199-c5edd2946f2b/181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3759023432 FASTQ NA 87bab1d0-10a6-491d-8199-c5edd2946f2b storage1 C3N-03186.RNA-Seq.R2.T C3N-03186 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d47e501-79d8-4891-9c5c-8fb876837447/181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4161674954 FASTQ NA 9d47e501-79d8-4891-9c5c-8fb876837447 storage1 C3N-03186.RNA-Seq.transcriptome.T.hg38 C3N-03186 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73a73bac-a31a-428b-b7b0-6bf6d1109c8d/3e4f82c1-fb53-4522-9ae5-6a5034b96bed.rna_seq.transcriptome.gdc_realn.bam 9098436389 BAM hg38 73a73bac-a31a-428b-b7b0-6bf6d1109c8d storage1 -C3N-03186.WGS.N C3N-03186 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f5d33fa-acdf-44fe-b14f-ece6991eb1bf/CPT0206940002.WholeGenome.RP-1303.bam 65040645125 BAM hg19 9f5d33fa-acdf-44fe-b14f-ece6991eb1bf storage1 C3N-03186.WGS.N.hg38 C3N-03186 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b30947ce-f48f-4950-a79b-c14d5b5f8260/6e67dba7-0c71-4c45-9d0b-d93b5a185421_wgs_gdc_realn.bam 97634516512 BAM hg38 b30947ce-f48f-4950-a79b-c14d5b5f8260 storage1 -C3N-03186.WGS.T C3N-03186 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16fc5973-a920-4c24-ba52-bf1003b15320/CPT0206880009.WholeGenome.RP-1303.bam 77551110154 BAM hg19 16fc5973-a920-4c24-ba52-bf1003b15320 storage1 C3N-03186.WGS.T.hg38 C3N-03186 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4656a5ac-0538-41d3-b81e-dd7cc4afa2c7/c30dd2c3-895f-44a7-aa8c-6013bae94327_wgs_gdc_realn.bam 116275102027 BAM hg38 4656a5ac-0538-41d3-b81e-dd7cc4afa2c7 storage1 -C3N-03186.WXS.N C3N-03186 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/047fcc60-52dc-44c5-a807-3cbfe0243806/CPT0206940002.WholeExome.RP-1303.bam 25823559443 BAM hg19 047fcc60-52dc-44c5-a807-3cbfe0243806 storage1 -C3N-03186.WXS.T C3N-03186 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebb1c679-a3ad-476f-984b-f00e83fd745c/CPT0206880009.WholeExome.RP-1303.bam 31278848454 BAM hg19 ebb1c679-a3ad-476f-984b-f00e83fd745c storage1 C3N-03188.RNA-Seq.chimeric.T.hg38 C3N-03188 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49f658c6-f3cb-4dc2-8a31-b1955fa15313/2363d696-be0c-47bd-a86b-3f8ca6ecb084.rna_seq.chimeric.gdc_realn.bam 41861884 BAM hg38 49f658c6-f3cb-4dc2-8a31-b1955fa15313 storage1 C3N-03188.RNA-Seq.R1.T C3N-03188 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76ca9742-918c-4db7-ac65-e842a937121e/180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R1_001.fastq.gz 3834393988 FASTQ NA 76ca9742-918c-4db7-ac65-e842a937121e storage1 C3N-03188.RNA-Seq.R2.T C3N-03188 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00da971e-c069-4aaf-a9b5-80a313d7b0bf/180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R2_001.fastq.gz 3998796827 FASTQ NA 00da971e-c069-4aaf-a9b5-80a313d7b0bf storage1 C3N-03188.RNA-Seq.transcriptome.T.hg38 C3N-03188 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3c1fac7-cec3-4ae0-a9d2-9d26e3a3b7da/2363d696-be0c-47bd-a86b-3f8ca6ecb084.rna_seq.transcriptome.gdc_realn.bam 9012069070 BAM hg38 f3c1fac7-cec3-4ae0-a9d2-9d26e3a3b7da storage1 -C3N-03188.WGS.N C3N-03188 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf3b8ee2-a68e-4b14-a0ef-5a49db68a16d/CPT0207080002.WholeGenome.RP-1303.bam 53507871721 BAM hg19 cf3b8ee2-a68e-4b14-a0ef-5a49db68a16d storage1 C3N-03188.WGS.N.hg38 C3N-03188 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b735008d-191e-43a9-9185-e6385b53018c/d018b972-f90c-490c-a9f4-da37c18224e0_wgs_gdc_realn.bam 79411908145 BAM hg38 b735008d-191e-43a9-9185-e6385b53018c storage1 -C3N-03188.WGS.T C3N-03188 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7639cf2-56e0-49c7-af72-b4aa1b59f60f/CPT0207030009.WholeGenome.RP-1303.bam 59348737026 BAM hg19 b7639cf2-56e0-49c7-af72-b4aa1b59f60f storage1 C3N-03188.WGS.T.hg38 C3N-03188 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2dec90b-70b4-4b53-bf41-503a0989c0d4/42276cec-9568-41dc-9ec2-5776cc3d9c55_wgs_gdc_realn.bam 90197216170 BAM hg38 f2dec90b-70b4-4b53-bf41-503a0989c0d4 storage1 -C3N-03188.WXS.N C3N-03188 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86ac4b9b-b8da-4c2a-aa1c-a74d3dfbd47d/CPT0207080002.WholeExome.RP-1303.bam 23165313560 BAM hg19 86ac4b9b-b8da-4c2a-aa1c-a74d3dfbd47d storage1 -C3N-03188.WXS.T C3N-03188 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46bebe5b-432e-4597-a895-9180a55fe14a/CPT0207030009.WholeExome.RP-1303.bam 25793588577 BAM hg19 46bebe5b-432e-4597-a895-9180a55fe14a storage1 C3N-03190.RNA-Seq.genomic.T.hg38 C3N-03190 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55b55adf-7d61-4e05-ada2-f0ec5b998e81/21738fef-075e-40b7-9347-0801385ec670.rna_seq.genomic.gdc_realn.bam 10161639998 BAM hg38 55b55adf-7d61-4e05-ada2-f0ec5b998e81 storage1 C3N-03190.RNA-Seq.R1.T C3N-03190 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/054f03c6-579f-4f81-9e49-70c7e4267788/190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4889574051 FASTQ NA 054f03c6-579f-4f81-9e49-70c7e4267788 storage1 C3N-03190.RNA-Seq.R2.T C3N-03190 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51bf57de-5b73-41a0-8d32-ff476c13a1e8/190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 5017397148 FASTQ NA 51bf57de-5b73-41a0-8d32-ff476c13a1e8 storage1 @@ -10105,25 +9575,17 @@ C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3338a3d1-7dfb-47eb-a5f9-d95dce211972/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ NA 3338a3d1-7dfb-47eb-a5f9-d95dce211972 storage1 C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 storage1 C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 storage1 -C3N-03448.WGS.N C3N-03448 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28bef61d-1ebb-4e66-8d27-9c253535c98c/CPT0225890002.WholeGenome.RP-2158.bam 26717378576 BAM hg19 28bef61d-1ebb-4e66-8d27-9c253535c98c storage1 C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38086ca8-0290-41a9-8ed4-b7db18d6022f/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM hg38 38086ca8-0290-41a9-8ed4-b7db18d6022f storage1 -C3N-03448.WGS.T C3N-03448 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56676a0e-5175-45ec-ad15-48766365d3d9/CPT0225870006.WholeGenome.RP-2158.bam 27006538735 BAM hg19 56676a0e-5175-45ec-ad15-48766365d3d9 storage1 C3N-03448.WGS.T.hg38 C3N-03448 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b713420f-1781-4045-8984-5ad7e13ee429/88b92c30-d2a1-4082-8f8a-74b0c810e12c_wgs_gdc_realn.bam 81360762813 BAM hg38 b713420f-1781-4045-8984-5ad7e13ee429 storage1 -C3N-03448.WXS.N C3N-03448 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbda0e56-2b5d-4399-b501-9f8f109f2a11/CPT0225890002.WholeExome.RP-1303.bam 26594326910 BAM hg19 cbda0e56-2b5d-4399-b501-9f8f109f2a11 storage1 C3N-03448.WXS.N.hg38 C3N-03448 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5110845-d1e0-40ec-bb1f-4a579825fd3a/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wxs_gdc_realn.bam 36135835999 BAM hg38 d5110845-d1e0-40ec-bb1f-4a579825fd3a storage1 -C3N-03448.WXS.T C3N-03448 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed97cb4-7639-4cc6-a9c8-96b394f3f684/CPT0225870006.WholeExome.RP-1303.bam 25599255128 BAM hg19 1ed97cb4-7639-4cc6-a9c8-96b394f3f684 storage1 C3N-03448.WXS.T.hg38 C3N-03448 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe33cf3-286e-4018-b4a5-0646edd91277/88b92c30-d2a1-4082-8f8a-74b0c810e12c_wxs_gdc_realn.bam 35505337871 BAM hg38 fbe33cf3-286e-4018-b4a5-0646edd91277 storage1 C3N-03449.RNA-Seq.R1.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8df9e03-10b6-41a3-972f-b6038ca02881/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ NA d8df9e03-10b6-41a3-972f-b6038ca02881 storage1 C3N-03449.RNA-Seq.R1.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8df9e03-10b6-41a3-972f-b6038ca02881/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ NA d8df9e03-10b6-41a3-972f-b6038ca02881 storage1 C3N-03449.RNA-Seq.R2.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/289921b1-b467-487e-ad93-095bdb3834ce/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ NA 289921b1-b467-487e-ad93-095bdb3834ce storage1 C3N-03449.RNA-Seq.R2.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/289921b1-b467-487e-ad93-095bdb3834ce/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ NA 289921b1-b467-487e-ad93-095bdb3834ce storage1 -C3N-03449.WGS.N C3N-03449 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de4e7d48-94d5-4d04-b1f0-54961182666b/CPT0225920002.WholeGenome.RP-2158.bam 20948538145 BAM hg19 de4e7d48-94d5-4d04-b1f0-54961182666b storage1 C3N-03449.WGS.N.hg38 C3N-03449 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12254d50-a4ec-4853-9b55-6e923e7ad99a/42736975-7e8e-49ed-b85f-298eab5e784c_wgs_gdc_realn.bam 63629727764 BAM hg38 12254d50-a4ec-4853-9b55-6e923e7ad99a storage1 -C3N-03449.WGS.T C3N-03449 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dee71466-6729-4791-8938-13ae43573976/CPT0225900006.WholeGenome.RP-2158.bam 27759977402 BAM hg19 dee71466-6729-4791-8938-13ae43573976 storage1 C3N-03449.WGS.T.hg38 C3N-03449 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd651894-4cf9-42a1-a907-d8a88f56d660/95344601-8d6d-4b58-b23c-2482f039b375_wgs_gdc_realn.bam 82964057648 BAM hg38 cd651894-4cf9-42a1-a907-d8a88f56d660 storage1 -C3N-03449.WXS.N C3N-03449 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f32cb33d-4283-4ce0-b90f-208b6862f1bb/CPT0225920002.WholeExome.RP-1303.bam 22286780870 BAM hg19 f32cb33d-4283-4ce0-b90f-208b6862f1bb storage1 C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9cc9f57-6994-4632-99c3-b7b44deb2f42/42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM hg38 e9cc9f57-6994-4632-99c3-b7b44deb2f42 storage1 -C3N-03449.WXS.T C3N-03449 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d08b9b23-6040-4abc-8473-a56667167668/CPT0225900006.WholeExome.RP-1303.bam 27253392773 BAM hg19 d08b9b23-6040-4abc-8473-a56667167668 storage1 C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c86b4b-863d-404c-a883-76d1abac071c/95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM hg38 b2c86b4b-863d-404c-a883-76d1abac071c storage1 C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81a63cde-b0d0-40d8-bd21-4ac99c45f504/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 storage1 C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81a63cde-b0d0-40d8-bd21-4ac99c45f504/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 storage1 @@ -10138,26 +9600,19 @@ C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c582f341-273b-490f-9e51-725a98439835/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ NA c582f341-273b-490f-9e51-725a98439835 storage1 C3N-03452.RNA-Seq.R2.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b82dc44-54ea-4dcb-8e7c-5b0167c478f0/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ NA 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 storage1 C3N-03452.RNA-Seq.R2.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b82dc44-54ea-4dcb-8e7c-5b0167c478f0/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ NA 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 storage1 -C3N-03452.WGS.N C3N-03452 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68708734-7e8f-4ab9-88bb-310161053f46/CPT0225980002.WholeGenome.RP-2158.bam 22971225120 BAM hg19 68708734-7e8f-4ab9-88bb-310161053f46 storage1 C3N-03452.WGS.N.hg38 C3N-03452 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd7df227-d920-4949-8ab7-191412252216/3d82230b-c081-4c11-9e1f-aed013981520_wgs_gdc_realn.bam 68800975416 BAM hg38 cd7df227-d920-4949-8ab7-191412252216 storage1 -C3N-03452.WGS.T C3N-03452 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c720dd8-6b46-4f2f-a8a2-603d62919edf/CPT0225960006.WholeGenome.RP-2158.bam 28423091199 BAM hg19 1c720dd8-6b46-4f2f-a8a2-603d62919edf storage1 C3N-03452.WGS.T.hg38 C3N-03452 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/285e6dc0-38fe-4ca5-a01c-d4ea82565353/c2109dc6-60b3-4bbe-b997-c781791a92c2_wgs_gdc_realn.bam 80891834156 BAM hg38 285e6dc0-38fe-4ca5-a01c-d4ea82565353 storage1 C3N-03452.WXS.A C3N-03452 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85461ad1-223c-4001-b20f-2e1046f69e0c/CPT0405170007.WholeExome.RP-1303.bam 29785107966 BAM hg19 85461ad1-223c-4001-b20f-2e1046f69e0c storage1 C3N-03452.WXS.N C3N-03452 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58d9dc12-c34c-4698-b5f3-c3f0feb17aaf/CPT0225980002.WholeExome.RP-1303.bam 22176413678 BAM hg19 58d9dc12-c34c-4698-b5f3-c3f0feb17aaf storage1 C3N-03452.WXS.N.hg38 C3N-03452 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72713898-819e-4775-b6e7-8e81a8d14e9e/3d82230b-c081-4c11-9e1f-aed013981520_wxs_gdc_realn.bam 29962435389 BAM hg38 72713898-819e-4775-b6e7-8e81a8d14e9e storage1 -C3N-03452.WXS.T C3N-03452 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24342f75-a181-44f5-8cbc-d85dd5e52dd7/CPT0225960006.WholeExome.RP-1303.bam 22236745714 BAM hg19 24342f75-a181-44f5-8cbc-d85dd5e52dd7 storage1 C3N-03452.WXS.T.hg38 C3N-03452 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa9af05c-4ced-4641-9f5d-5b425c0008f2/c2109dc6-60b3-4bbe-b997-c781791a92c2_wxs_gdc_realn.bam 31266490554 BAM hg38 fa9af05c-4ced-4641-9f5d-5b425c0008f2 storage1 C3N-03453.RNA-Seq.R1.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3a1d4f8-d8b2-4e47-be49-bfd4d235448f/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ NA a3a1d4f8-d8b2-4e47-be49-bfd4d235448f storage1 C3N-03453.RNA-Seq.R1.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3a1d4f8-d8b2-4e47-be49-bfd4d235448f/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ NA a3a1d4f8-d8b2-4e47-be49-bfd4d235448f storage1 C3N-03453.RNA-Seq.R2.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d643ac36-a2be-46bd-bcf4-eac66dfe9253/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ NA d643ac36-a2be-46bd-bcf4-eac66dfe9253 storage1 C3N-03453.RNA-Seq.R2.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d643ac36-a2be-46bd-bcf4-eac66dfe9253/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ NA d643ac36-a2be-46bd-bcf4-eac66dfe9253 storage1 -C3N-03453.WGS.N C3N-03453 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/684bad64-e371-4a9d-8370-e390a5d037fc/CPT0226010002.WholeGenome.RP-2158.bam 22150234243 BAM hg19 684bad64-e371-4a9d-8370-e390a5d037fc storage1 C3N-03453.WGS.N.hg38 C3N-03453 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/668c831a-265b-418f-8444-303ea0d612f0/883e62e0-05c1-4b41-9315-d32aa83e8990_wgs_gdc_realn.bam 66079008259 BAM hg38 668c831a-265b-418f-8444-303ea0d612f0 storage1 -C3N-03453.WGS.T C3N-03453 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67e71faf-078b-4b6b-881c-7411be49f4c9/CPT0225990006.WholeGenome.RP-2158.bam 21511984237 BAM hg19 67e71faf-078b-4b6b-881c-7411be49f4c9 storage1 C3N-03453.WGS.T.hg38 C3N-03453 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ab79ed1-6153-4d61-82c9-191f5573df89/bce376c8-06f6-4242-a32b-9488f7f4eb82_wgs_gdc_realn.bam 60130960553 BAM hg38 3ab79ed1-6153-4d61-82c9-191f5573df89 storage1 -C3N-03453.WXS.N C3N-03453 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f9e6366-516d-4bb4-993f-cc7a657b9dba/CPT0226010002.WholeExome.RP-1303.bam 25670725042 BAM hg19 1f9e6366-516d-4bb4-993f-cc7a657b9dba storage1 C3N-03453.WXS.N.hg38 C3N-03453 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbef702e-4c4b-439b-84df-4f17c09b025d/883e62e0-05c1-4b41-9315-d32aa83e8990_wxs_gdc_realn.bam 35687539170 BAM hg38 fbef702e-4c4b-439b-84df-4f17c09b025d storage1 -C3N-03453.WXS.T C3N-03453 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e7c70a6-be10-4a69-9f83-8ef515a0d505/CPT0225990006.WholeExome.RP-1303.bam 26650952812 BAM hg19 3e7c70a6-be10-4a69-9f83-8ef515a0d505 storage1 C3N-03453.WXS.T.hg38 C3N-03453 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8b4ef77-12ec-4266-a6f6-178327ea0fd0/bce376c8-06f6-4242-a32b-9488f7f4eb82_wxs_gdc_realn.bam 36876819652 BAM hg38 c8b4ef77-12ec-4266-a6f6-178327ea0fd0 storage1 C3N-03456.RNA-Seq.R1.T C3N-03456 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6085a9b1-f8e8-4e81-ba00-08c1af1349ac/190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4617184550 FASTQ NA 6085a9b1-f8e8-4e81-ba00-08c1af1349ac storage1 C3N-03456.RNA-Seq.R1.T C3N-03456 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64dc83e5-eee7-4133-b485-c7f306d12a54/20210729_P3_D6_WB7988-Plate3_S42_R1_001.fastq.gz 6182276232 FASTQ NA 64dc83e5-eee7-4133-b485-c7f306d12a54 storage1 @@ -10177,35 +9632,23 @@ C3N-03473.RNA-Seq.chimeric.T.hg38 C3N-03473 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-03473.RNA-Seq.R1.T C3N-03473 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bd3819d-93da-4567-928b-f5927ac9e1d4/180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ NA 4bd3819d-93da-4567-928b-f5927ac9e1d4 storage1 C3N-03473.RNA-Seq.R2.T C3N-03473 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47023c29-a0d9-44e4-9ee0-c508be560e14/180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ NA 47023c29-a0d9-44e4-9ee0-c508be560e14 storage1 C3N-03473.RNA-Seq.transcriptome.T.hg38 C3N-03473 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3e68ef3-24a6-4164-9dc8-635515554a36/9932b5a7-d884-4be4-9a60-318ea7cda283.rna_seq.transcriptome.gdc_realn.bam 7706554792 BAM hg38 c3e68ef3-24a6-4164-9dc8-635515554a36 storage1 -C3N-03473.WGS.N C3N-03473 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e0af5ee-49ae-4f50-ba39-2746bd64d86c/CPT0207150002.WholeGenome.RP-1303.bam 89608667206 BAM hg19 1e0af5ee-49ae-4f50-ba39-2746bd64d86c storage1 C3N-03473.WGS.N.hg38 C3N-03473 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7bfcf0c-933e-4354-baba-4ef357a7a93e/badc8643-2e9d-453d-aaaf-2b0d5e7c602d_wgs_gdc_realn.bam 135635714293 BAM hg38 b7bfcf0c-933e-4354-baba-4ef357a7a93e storage1 -C3N-03473.WGS.T C3N-03473 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/969686ba-3f58-4e2d-ae69-eaf430809a84/CPT0207090009.WholeGenome.RP-1303.bam 58921785117 BAM hg19 969686ba-3f58-4e2d-ae69-eaf430809a84 storage1 C3N-03473.WGS.T.hg38 C3N-03473 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e31eefe-0667-4ff6-9fe7-223db0466a72/ddb69d52-0d77-4d38-89ff-5919f9e8df2e_wgs_gdc_realn.bam 89962842045 BAM hg38 6e31eefe-0667-4ff6-9fe7-223db0466a72 storage1 -C3N-03473.WXS.N C3N-03473 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7bd9319-ad39-458b-a5f2-c14b05a75efa/CPT0207150002.WholeExome.RP-1303.bam 24878089062 BAM hg19 f7bd9319-ad39-458b-a5f2-c14b05a75efa storage1 -C3N-03473.WXS.T C3N-03473 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc7118e7-1b1c-4d52-8bf6-1d854c5b6489/CPT0207090009.WholeExome.RP-1303.bam 20883728986 BAM hg19 fc7118e7-1b1c-4d52-8bf6-1d854c5b6489 storage1 C3N-03480.RNA-Seq.R1.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f76e24bf-2452-4f99-8d37-8cbe2327cfbc/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ NA f76e24bf-2452-4f99-8d37-8cbe2327cfbc storage1 C3N-03480.RNA-Seq.R1.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f76e24bf-2452-4f99-8d37-8cbe2327cfbc/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ NA f76e24bf-2452-4f99-8d37-8cbe2327cfbc storage1 C3N-03480.RNA-Seq.R2.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dc1a8c2-6c07-43e4-9901-b5885da43e33/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ NA 4dc1a8c2-6c07-43e4-9901-b5885da43e33 storage1 C3N-03480.RNA-Seq.R2.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dc1a8c2-6c07-43e4-9901-b5885da43e33/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ NA 4dc1a8c2-6c07-43e4-9901-b5885da43e33 storage1 -C3N-03480.WGS.N C3N-03480 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/106b7fd7-a720-49cb-9c8a-4bc96ff0ff72/CPT0285120002.WholeGenome.RP-2158.bam 22643381148 BAM hg19 106b7fd7-a720-49cb-9c8a-4bc96ff0ff72 storage1 C3N-03480.WGS.N.hg38 C3N-03480 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e9debd8-9891-4238-bea9-3329317f7f86/8546651a-1f37-4289-8c55-d588c65768e2_wgs_gdc_realn.bam 69550902854 BAM hg38 2e9debd8-9891-4238-bea9-3329317f7f86 storage1 -C3N-03480.WGS.T C3N-03480 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b08961ab-c5d2-4a32-8072-78e42d543d91/CPT0285090006.WholeGenome.RP-2158.bam 23801172742 BAM hg19 b08961ab-c5d2-4a32-8072-78e42d543d91 storage1 C3N-03480.WGS.T.hg38 C3N-03480 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed1dba4a-0836-458e-add2-86f0bae54d89/48422358-852c-4656-ae8a-0128e64c2c10_wgs_gdc_realn.bam 70954323517 BAM hg38 ed1dba4a-0836-458e-add2-86f0bae54d89 storage1 -C3N-03480.WXS.N C3N-03480 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e435f35-5da3-4a71-bb2b-093597145467/CPT0285120002.WholeExome.RP-1303.bam 31013845954 BAM hg19 1e435f35-5da3-4a71-bb2b-093597145467 storage1 C3N-03480.WXS.N.hg38 C3N-03480 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fdb16b2-c34d-44b2-a6d9-cd660db8048a/8546651a-1f37-4289-8c55-d588c65768e2_wxs_gdc_realn.bam 42199263487 BAM hg38 4fdb16b2-c34d-44b2-a6d9-cd660db8048a storage1 -C3N-03480.WXS.T C3N-03480 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0db6a83-d137-4648-a861-3060e2ec26c7/CPT0285090006.WholeExome.RP-1303.bam 28711739181 BAM hg19 e0db6a83-d137-4648-a861-3060e2ec26c7 storage1 C3N-03480.WXS.T.hg38 C3N-03480 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/802cd086-24f7-4a2e-9d26-1b5a574065a2/48422358-852c-4656-ae8a-0128e64c2c10_wxs_gdc_realn.bam 39810831362 BAM hg38 802cd086-24f7-4a2e-9d26-1b5a574065a2 storage1 C3N-03484.RNA-Seq.R1.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43c7c7da-6399-4ecb-b5e9-7bd1481fd3af/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ NA 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af storage1 C3N-03484.RNA-Seq.R1.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43c7c7da-6399-4ecb-b5e9-7bd1481fd3af/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ NA 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af storage1 C3N-03484.RNA-Seq.R2.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f10504f3-e9a4-4e87-9cda-7b7d225d0b17/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ NA f10504f3-e9a4-4e87-9cda-7b7d225d0b17 storage1 C3N-03484.RNA-Seq.R2.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f10504f3-e9a4-4e87-9cda-7b7d225d0b17/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ NA f10504f3-e9a4-4e87-9cda-7b7d225d0b17 storage1 -C3N-03484.WGS.N C3N-03484 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1123e65d-b1d8-4090-9660-a5b192325c5d/CPT0285150002.WholeGenome.RP-2158.bam 29465818741 BAM hg19 1123e65d-b1d8-4090-9660-a5b192325c5d storage1 C3N-03484.WGS.N.hg38 C3N-03484 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b795115-1bc6-4f21-96c6-53a3249ce701/258921c4-2923-423e-baae-2d7c9530872c_wgs_gdc_realn.bam 87200070473 BAM hg38 9b795115-1bc6-4f21-96c6-53a3249ce701 storage1 -C3N-03484.WGS.T C3N-03484 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4e3ab41-533f-487c-b10e-ee7bc793d949/CPT0285140006.WholeGenome.RP-2158.bam 20856065528 BAM hg19 d4e3ab41-533f-487c-b10e-ee7bc793d949 storage1 C3N-03484.WGS.T.hg38 C3N-03484 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e/fc55acf5-fe90-40c2-9d6f-665007d5bf46_wgs_gdc_realn.bam 62228038734 BAM hg38 aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e storage1 -C3N-03484.WXS.N C3N-03484 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8cce809-a398-47be-8948-746afe7eec16/CPT0285150002.WholeExome.RP-1303.bam 23963647596 BAM hg19 f8cce809-a398-47be-8948-746afe7eec16 storage1 C3N-03484.WXS.N.hg38 C3N-03484 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fa3081f-5444-4293-a0b7-ec0010a27be4/258921c4-2923-423e-baae-2d7c9530872c_wxs_gdc_realn.bam 32203087130 BAM hg38 0fa3081f-5444-4293-a0b7-ec0010a27be4 storage1 -C3N-03484.WXS.T C3N-03484 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8cccab3-76d7-4121-bc02-0595bb4339d7/CPT0285140006.WholeExome.RP-1303.bam 24592525747 BAM hg19 b8cccab3-76d7-4121-bc02-0595bb4339d7 storage1 C3N-03484.WXS.T.hg38 C3N-03484 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc502628-c645-4eaf-94b2-d12c2924ea3b/fc55acf5-fe90-40c2-9d6f-665007d5bf46_wxs_gdc_realn.bam 34008928383 BAM hg38 cc502628-c645-4eaf-94b2-d12c2924ea3b storage1 C3N-03486.RNA-Seq.R1.A C3N-03486 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e344fc2b-0a01-4b88-9d6e-3030b6535de0/181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 2878895786 FASTQ NA e344fc2b-0a01-4b88-9d6e-3030b6535de0 storage1 C3N-03486.RNA-Seq.R1.T C3N-03486 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46b4e742-4b02-485c-a4c6-746de574c222/181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R1_001.fastq.gz 4475166605 FASTQ NA 46b4e742-4b02-485c-a4c6-746de574c222 storage1 @@ -10296,37 +9739,25 @@ C3N-03755.RNA-Seq.R1.T C3N-03755 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03755.RNA-Seq.R1.T C3N-03755 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b845241e-88cb-4f0c-9247-637536d1a2af/200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R1_001.fastq.gz 3404251189 FASTQ NA b845241e-88cb-4f0c-9247-637536d1a2af storage1 C3N-03755.RNA-Seq.R2.T C3N-03755 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76548cbb-338c-4415-83dd-81b50d9ec658/200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ NA 76548cbb-338c-4415-83dd-81b50d9ec658 storage1 C3N-03755.RNA-Seq.R2.T C3N-03755 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76548cbb-338c-4415-83dd-81b50d9ec658/200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ NA 76548cbb-338c-4415-83dd-81b50d9ec658 storage1 -C3N-03755.WGS.N C3N-03755 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e29350af-b032-4737-bb26-93bc812e18e9/CPT0248100002.WholeGenome.RP-2158.bam 22211557499 BAM hg19 e29350af-b032-4737-bb26-93bc812e18e9 storage1 C3N-03755.WGS.N.hg38 C3N-03755 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6/50fce217-0cc7-4115-8100-8251b2e1dbe8_wgs_gdc_realn.bam 66609631094 BAM hg38 dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6 storage1 -C3N-03755.WGS.T C3N-03755 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ab180dc-d608-4f96-8b61-02cda9280ef7/CPT0248080006.WholeGenome.RP-2158.bam 25993185932 BAM hg19 5ab180dc-d608-4f96-8b61-02cda9280ef7 storage1 C3N-03755.WGS.T.hg38 C3N-03755 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3441fcde-5a81-4c50-8ec0-24c4ec3bb284/b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wgs_gdc_realn.bam 75535747829 BAM hg38 3441fcde-5a81-4c50-8ec0-24c4ec3bb284 storage1 -C3N-03755.WXS.N C3N-03755 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b06fbb9f-2cc9-44af-b3ed-238b820450e9/CPT0248100002.WholeExome.RP-1303.bam 23664884530 BAM hg19 b06fbb9f-2cc9-44af-b3ed-238b820450e9 storage1 C3N-03755.WXS.N.hg38 C3N-03755 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46385935-1b35-415e-86f3-09448db274f3/50fce217-0cc7-4115-8100-8251b2e1dbe8_wxs_gdc_realn.bam 30506791502 BAM hg38 46385935-1b35-415e-86f3-09448db274f3 storage1 -C3N-03755.WXS.T C3N-03755 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52fa5352-c351-47f9-aa53-005005a6956f/CPT0248080006.WholeExome.RP-1303.bam 17601322610 BAM hg19 52fa5352-c351-47f9-aa53-005005a6956f storage1 C3N-03755.WXS.T.hg38 C3N-03755 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6a71dfb-c2ed-4488-a1ab-435ed2f4493f/b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wxs_gdc_realn.bam 26137800668 BAM hg38 c6a71dfb-c2ed-4488-a1ab-435ed2f4493f storage1 C3N-03756.RNA-Seq.R1.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ NA e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 storage1 C3N-03756.RNA-Seq.R1.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ NA e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 storage1 C3N-03756.RNA-Seq.R2.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5a6f477-3888-416d-bbe8-c6110091e40e/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ NA d5a6f477-3888-416d-bbe8-c6110091e40e storage1 C3N-03756.RNA-Seq.R2.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5a6f477-3888-416d-bbe8-c6110091e40e/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ NA d5a6f477-3888-416d-bbe8-c6110091e40e storage1 -C3N-03756.WGS.N C3N-03756 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1cd96b5e-db11-4c2d-a9b2-d768a15a1cdb/CPT0248150002.WholeGenome.RP-2158.bam 21131293979 BAM hg19 1cd96b5e-db11-4c2d-a9b2-d768a15a1cdb storage1 C3N-03756.WGS.N.hg38 C3N-03756 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7091cde-15c0-427a-ab8c-f4260501dd7d/66e454ec-e406-4636-ac39-6f866a915a54_wgs_gdc_realn.bam 62889344302 BAM hg38 e7091cde-15c0-427a-ab8c-f4260501dd7d storage1 -C3N-03756.WGS.T C3N-03756 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ef22001-f398-4ea5-8f12-ee2e72f00c6d/CPT0248110006.WholeGenome.RP-2158.bam 26962179175 BAM hg19 3ef22001-f398-4ea5-8f12-ee2e72f00c6d storage1 C3N-03756.WGS.T.hg38 C3N-03756 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2312a271-58c8-4e5f-a6eb-702e901ea6fc/9ff900ed-184e-485a-a302-8547b3370e49_wgs_gdc_realn.bam 79817657270 BAM hg38 2312a271-58c8-4e5f-a6eb-702e901ea6fc storage1 -C3N-03756.WXS.N C3N-03756 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e20215d6-865c-4277-b5e9-c5cbcbc9fbd7/CPT0248150002.WholeExome.RP-1303.bam 19049399344 BAM hg19 e20215d6-865c-4277-b5e9-c5cbcbc9fbd7 storage1 C3N-03756.WXS.N.hg38 C3N-03756 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55625e73-b970-4eed-a670-24a1338b7427/66e454ec-e406-4636-ac39-6f866a915a54_wxs_gdc_realn.bam 24900533593 BAM hg38 55625e73-b970-4eed-a670-24a1338b7427 storage1 -C3N-03756.WXS.T C3N-03756 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49daf6bc-00a0-493f-af83-b36bae5c0390/CPT0248110006.WholeExome.RP-1303.bam 22753080992 BAM hg19 49daf6bc-00a0-493f-af83-b36bae5c0390 storage1 C3N-03756.WXS.T.hg38 C3N-03756 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19d498ba-9032-44d3-bf45-786ac215e4e1/9ff900ed-184e-485a-a302-8547b3370e49_wxs_gdc_realn.bam 31383324403 BAM hg38 19d498ba-9032-44d3-bf45-786ac215e4e1 storage1 C3N-03757.RNA-Seq.R1.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a00f13f-802b-479a-9c10-208b3158248a/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ NA 4a00f13f-802b-479a-9c10-208b3158248a storage1 C3N-03757.RNA-Seq.R1.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a00f13f-802b-479a-9c10-208b3158248a/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ NA 4a00f13f-802b-479a-9c10-208b3158248a storage1 C3N-03757.RNA-Seq.R2.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/973c3d9c-0686-4288-a83d-725e7d2d0488/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ NA 973c3d9c-0686-4288-a83d-725e7d2d0488 storage1 C3N-03757.RNA-Seq.R2.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/973c3d9c-0686-4288-a83d-725e7d2d0488/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ NA 973c3d9c-0686-4288-a83d-725e7d2d0488 storage1 -C3N-03757.WGS.N C3N-03757 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcc3251e-5b36-4ca6-bac9-212dd4dd5d9a/CPT0248070002.WholeGenome.RP-2158.bam 24748606890 BAM hg19 bcc3251e-5b36-4ca6-bac9-212dd4dd5d9a storage1 C3N-03757.WGS.N.hg38 C3N-03757 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bbe506e-60c3-4df6-af3d-f7713d49b0dc/8d894511-5d1c-4e1d-9276-2652042bb730_wgs_gdc_realn.bam 74844179183 BAM hg38 8bbe506e-60c3-4df6-af3d-f7713d49b0dc storage1 -C3N-03757.WGS.T C3N-03757 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/412452bc-414e-4ffc-aa7b-af95b5e0dabc/CPT0248040006.WholeGenome.RP-2158.bam 21315382528 BAM hg19 412452bc-414e-4ffc-aa7b-af95b5e0dabc storage1 C3N-03757.WGS.T.hg38 C3N-03757 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5398b66-5b43-4f83-a30a-21db3a30b5e9/fa002608-faaf-4aa1-8594-0146105e9048_wgs_gdc_realn.bam 63162009480 BAM hg38 b5398b66-5b43-4f83-a30a-21db3a30b5e9 storage1 -C3N-03757.WXS.N C3N-03757 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d167d275-86d1-4c8a-bee2-8b8adea4945f/CPT0248070002.WholeExome.RP-1303.bam 22962780889 BAM hg19 d167d275-86d1-4c8a-bee2-8b8adea4945f storage1 C3N-03757.WXS.N.hg38 C3N-03757 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc78ea1b-1673-4776-a7b8-93d09d7234dd/8d894511-5d1c-4e1d-9276-2652042bb730_wxs_gdc_realn.bam 31169625067 BAM hg38 bc78ea1b-1673-4776-a7b8-93d09d7234dd storage1 -C3N-03757.WXS.T C3N-03757 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb48e7ec-37d9-4788-94c2-eb9a5adbc31a/CPT0248040006.WholeExome.RP-1303.bam 21692557413 BAM hg19 fb48e7ec-37d9-4788-94c2-eb9a5adbc31a storage1 C3N-03757.WXS.T.hg38 C3N-03757 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21121304-f000-449a-b9b4-898035459432/fa002608-faaf-4aa1-8594-0146105e9048_wxs_gdc_realn.bam 29973231524 BAM hg38 21121304-f000-449a-b9b4-898035459432 storage1 C3N-03762.RNA-Seq.R1.A C3N-03762 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d8aace6-dfbe-405a-a72d-0e7aad158a73/200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R1_001.fastq.gz 4073473721 FASTQ NA 2d8aace6-dfbe-405a-a72d-0e7aad158a73 storage1 C3N-03762.RNA-Seq.R1.T C3N-03762 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eedce802-aab1-49aa-9611-c3a4f3b214b7/200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3340458440 FASTQ NA eedce802-aab1-49aa-9611-c3a4f3b214b7 storage1 @@ -10391,91 +9822,59 @@ C3N-03789.RNA-Seq.R1.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03789.RNA-Seq.R1.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de40a9c3-603d-44e2-a76e-9b4a98d3f482/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ NA de40a9c3-603d-44e2-a76e-9b4a98d3f482 storage1 C3N-03789.RNA-Seq.R2.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f25e421-ff9d-41ab-bef9-2503901bdb40/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ NA 0f25e421-ff9d-41ab-bef9-2503901bdb40 storage1 C3N-03789.RNA-Seq.R2.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f25e421-ff9d-41ab-bef9-2503901bdb40/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ NA 0f25e421-ff9d-41ab-bef9-2503901bdb40 storage1 -C3N-03789.WGS.N C3N-03789 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5c73bfd-9555-4862-bdc0-e05493aa48fb/CPT0244880002.WholeGenome.RP-2158.bam 32902918385 BAM hg19 f5c73bfd-9555-4862-bdc0-e05493aa48fb storage1 C3N-03789.WGS.N.hg38 C3N-03789 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c300354a-780b-4904-91d1-54e08b324a01/d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wgs_gdc_realn.bam 100034438784 BAM hg38 c300354a-780b-4904-91d1-54e08b324a01 storage1 -C3N-03789.WGS.T C3N-03789 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ecd6587-05f6-42d4-b7a5-bd592a8ecef5/CPT0244860006.WholeGenome.RP-2158.bam 21896768790 BAM hg19 8ecd6587-05f6-42d4-b7a5-bd592a8ecef5 storage1 C3N-03789.WGS.T.hg38 C3N-03789 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e036af9-a3a3-48ed-ab3e-5d5406e9b91f/81c4a568-2fb2-44a1-b5cd-0654380d459a_wgs_gdc_realn.bam 62404522107 BAM hg38 5e036af9-a3a3-48ed-ab3e-5d5406e9b91f storage1 -C3N-03789.WXS.N C3N-03789 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1de1731-390b-499e-8c2b-25add41d85e8/CPT0244880002.WholeExome.RP-1303.bam 24719484242 BAM hg19 f1de1731-390b-499e-8c2b-25add41d85e8 storage1 C3N-03789.WXS.N.hg38 C3N-03789 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502434e4-f053-44d4-b480-d40873a0c659/d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wxs_gdc_realn.bam 34710561156 BAM hg38 502434e4-f053-44d4-b480-d40873a0c659 storage1 -C3N-03789.WXS.T C3N-03789 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5dbc9e9-c152-4944-83a8-74e70f97e3d6/CPT0244860006.WholeExome.RP-1303.bam 18044673025 BAM hg19 e5dbc9e9-c152-4944-83a8-74e70f97e3d6 storage1 C3N-03789.WXS.T.hg38 C3N-03789 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfa3caaf-f484-40f9-bd13-3708af6901c4/81c4a568-2fb2-44a1-b5cd-0654380d459a_wxs_gdc_realn.bam 25433729718 BAM hg38 cfa3caaf-f484-40f9-bd13-3708af6901c4 storage1 C3N-03791.RNA-Seq.R1.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/278403a7-7c34-4b9e-97d5-98df7b34b730/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ NA 278403a7-7c34-4b9e-97d5-98df7b34b730 storage1 C3N-03791.RNA-Seq.R1.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/278403a7-7c34-4b9e-97d5-98df7b34b730/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ NA 278403a7-7c34-4b9e-97d5-98df7b34b730 storage1 C3N-03791.RNA-Seq.R2.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0f0a291-d112-4eac-affa-355d24b03424/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ NA e0f0a291-d112-4eac-affa-355d24b03424 storage1 C3N-03791.RNA-Seq.R2.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0f0a291-d112-4eac-affa-355d24b03424/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ NA e0f0a291-d112-4eac-affa-355d24b03424 storage1 -C3N-03791.WGS.N C3N-03791 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ba6512e-5785-4e32-bce6-13f8b80aad3a/CPT0248220002.WholeGenome.RP-2158.bam 26498624553 BAM hg19 3ba6512e-5785-4e32-bce6-13f8b80aad3a storage1 C3N-03791.WGS.N.hg38 C3N-03791 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbb9edea-f9d6-4add-b71f-a6229f36db20/2b68f934-9910-4dc6-adc3-1cf82764a7a0_wgs_gdc_realn.bam 74021298457 BAM hg38 dbb9edea-f9d6-4add-b71f-a6229f36db20 storage1 -C3N-03791.WGS.T C3N-03791 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8b7da1d-caf4-465b-871e-bd7d05cbc406/CPT0248160007.WholeGenome.RP-2158.bam 21814922440 BAM hg19 e8b7da1d-caf4-465b-871e-bd7d05cbc406 storage1 C3N-03791.WGS.T.hg38 C3N-03791 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d67076c-f460-4452-b785-b2aa0e0ae8df/a12853e7-7ad9-40e5-a71a-b50c18db7465_wgs_gdc_realn.bam 64319191270 BAM hg38 9d67076c-f460-4452-b785-b2aa0e0ae8df storage1 -C3N-03791.WXS.N C3N-03791 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1b09246-acf2-42d0-9183-c449f8a30275/CPT0248220002.WholeExome.RP-1303.bam 33064684299 BAM hg19 d1b09246-acf2-42d0-9183-c449f8a30275 storage1 C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16b1732d-19aa-4414-a010-261a7c7295d1/2b68f934-9910-4dc6-adc3-1cf82764a7a0_wxs_gdc_realn.bam 44267823987 BAM hg38 16b1732d-19aa-4414-a010-261a7c7295d1 storage1 -C3N-03791.WXS.T C3N-03791 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8db33fa4-0c4d-4d3a-bb9e-843f5d15f771/CPT0248160007.WholeExome.RP-1303.bam 20778146670 BAM hg19 8db33fa4-0c4d-4d3a-bb9e-843f5d15f771 storage1 C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93a0f29b-98ed-46e0-8f8b-03e4b9e363db/a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM hg38 93a0f29b-98ed-46e0-8f8b-03e4b9e363db storage1 C3N-03792.RNA-Seq.R1.T C3N-03792 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc36ac00-dcf4-4714-9a22-e1b19e708b23/201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ NA dc36ac00-dcf4-4714-9a22-e1b19e708b23 storage1 C3N-03792.RNA-Seq.R2.T C3N-03792 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a7b201e1-89f6-4622-b6d8-a6271f6ab253/201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ NA a7b201e1-89f6-4622-b6d8-a6271f6ab253 storage1 -C3N-03792.WGS.N C3N-03792 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4/CPT0292740002.WholeGenome.RP-2158.bam 26554543598 BAM hg19 9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4 storage1 C3N-03792.WGS.N.hg38 C3N-03792 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6/3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 82016915053 BAM hg38 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 storage1 -C3N-03792.WGS.T C3N-03792 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53615a7a-6378-4b4f-804c-266c02f512f1/CPT0292720006.WholeGenome.RP-2158.bam 24306496119 BAM hg19 53615a7a-6378-4b4f-804c-266c02f512f1 storage1 C3N-03792.WGS.T.hg38 C3N-03792 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/589da87e-23f6-4ea0-a617-aca6a439932b/e3217e6c-3148-4949-9082-6a364c7f5166_wgs_gdc_realn.bam 70908445543 BAM hg38 589da87e-23f6-4ea0-a617-aca6a439932b storage1 -C3N-03792.WXS.N C3N-03792 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e2c02df-13d4-4874-9846-dcaad8847f04/CPT0292740002.WholeExome.RP-1303.bam 22254955383 BAM hg19 8e2c02df-13d4-4874-9846-dcaad8847f04 storage1 C3N-03792.WXS.N.hg38 C3N-03792 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adfca261-c468-4f30-8049-2aaa440ba357/3d7cbf18-a043-454f-8905-cd5f885c8585_wxs_gdc_realn.bam 31161726626 BAM hg38 adfca261-c468-4f30-8049-2aaa440ba357 storage1 -C3N-03792.WXS.T C3N-03792 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abcd035f-5b1a-4bad-8a77-53f065088d4b/CPT0292720006.WholeExome.RP-1303.bam 25530290850 BAM hg19 abcd035f-5b1a-4bad-8a77-53f065088d4b storage1 C3N-03792.WXS.T.hg38 C3N-03792 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dda791c-46ac-47fb-a77d-bd046ba2c254/e3217e6c-3148-4949-9082-6a364c7f5166_wxs_gdc_realn.bam 34687747029 BAM hg38 5dda791c-46ac-47fb-a77d-bd046ba2c254 storage1 C3N-03796.RNA-Seq.R1.T C3N-03796 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b454290d-cc02-4dba-9054-63f52ec8be2c/201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ NA b454290d-cc02-4dba-9054-63f52ec8be2c storage1 C3N-03796.RNA-Seq.R2.T C3N-03796 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8e13d55-81ac-4ea7-bdf8-4113326e7051/201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ NA a8e13d55-81ac-4ea7-bdf8-4113326e7051 storage1 -C3N-03796.WGS.N C3N-03796 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0886d2a8-bb29-46eb-98f3-46981d11faf8/CPT0285170002.WholeGenome.RP-2158.bam 26251928465 BAM hg19 0886d2a8-bb29-46eb-98f3-46981d11faf8 storage1 C3N-03796.WGS.N.hg38 C3N-03796 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44090d4f-41a1-4a1c-840a-f1c20832adde/108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 75789850346 BAM hg38 44090d4f-41a1-4a1c-840a-f1c20832adde storage1 -C3N-03796.WGS.T C3N-03796 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a/CPT0285160006.WholeGenome.RP-2158.bam 19793089386 BAM hg19 79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a storage1 C3N-03796.WGS.T.hg38 C3N-03796 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dab304ed-18fc-4407-b298-b1c9e04fadbf/a34a1b81-a986-4402-a383-1bc5816a0e7e_wgs_gdc_realn.bam 59675089295 BAM hg38 dab304ed-18fc-4407-b298-b1c9e04fadbf storage1 -C3N-03796.WXS.N C3N-03796 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98c74117-697c-4f57-a461-30992c6f2d94/CPT0285170002.WholeExome.RP-1303.bam 21275282524 BAM hg19 98c74117-697c-4f57-a461-30992c6f2d94 storage1 C3N-03796.WXS.N.hg38 C3N-03796 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9b469ca-78ae-4955-b0cc-678779308d56/108e1690-f144-4cef-a077-4bf4a30f3205_wxs_gdc_realn.bam 29516421065 BAM hg38 c9b469ca-78ae-4955-b0cc-678779308d56 storage1 -C3N-03796.WXS.T C3N-03796 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d58e49fd-4ac5-4873-a836-b161a9ba3847/CPT0285160006.WholeExome.RP-1303.bam 20614985474 BAM hg19 d58e49fd-4ac5-4873-a836-b161a9ba3847 storage1 C3N-03796.WXS.T.hg38 C3N-03796 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afc3e47c-e82c-4335-a2da-fbf630370f1c/a34a1b81-a986-4402-a383-1bc5816a0e7e_wxs_gdc_realn.bam 28580878405 BAM hg38 afc3e47c-e82c-4335-a2da-fbf630370f1c storage1 C3N-03797.RNA-Seq.R1.T C3N-03797 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed5077a5-706a-4d83-a70f-6ec809c30895/200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R1_001.fastq.gz 2749145746 FASTQ NA ed5077a5-706a-4d83-a70f-6ec809c30895 storage1 C3N-03797.RNA-Seq.R2.T C3N-03797 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e0d0413-eaf2-4b81-9784-5f28d36b9eb3/200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ NA 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 storage1 -C3N-03797.WGS.N C3N-03797 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c55e1798-2951-4cf7-abe0-790e9cb25eeb/CPT0285210002.WholeGenome.RP-2158.bam 35420074575 BAM hg19 c55e1798-2951-4cf7-abe0-790e9cb25eeb storage1 C3N-03797.WGS.N.hg38 C3N-03797 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8df50e5-603b-4afa-987d-53514939e122/966c6951-4f60-4deb-8ffe-9c5954afab8e_wgs_gdc_realn.bam 109141152803 BAM hg38 c8df50e5-603b-4afa-987d-53514939e122 storage1 -C3N-03797.WGS.T C3N-03797 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/496997c1-269b-4d43-9b29-26a24935dc5e/CPT0285180007.WholeGenome.RP-2158.bam 22181936172 BAM hg19 496997c1-269b-4d43-9b29-26a24935dc5e storage1 C3N-03797.WGS.T.hg38 C3N-03797 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ef14794-ec5b-4756-b14e-78e0a5b5f791/422a6465-56ff-4265-bb86-43cf4b882e46_wgs_gdc_realn.bam 65793765773 BAM hg38 9ef14794-ec5b-4756-b14e-78e0a5b5f791 storage1 -C3N-03797.WXS.N C3N-03797 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22d5c16f-aa32-42b0-bb46-b17b6a5d1d0f/CPT0285210002.WholeExome.RP-1303.bam 27620467859 BAM hg19 22d5c16f-aa32-42b0-bb46-b17b6a5d1d0f storage1 C3N-03797.WXS.N.hg38 C3N-03797 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6247145-875d-4914-adf0-8b436ca75f7a/966c6951-4f60-4deb-8ffe-9c5954afab8e_wxs_gdc_realn.bam 36770309194 BAM hg38 d6247145-875d-4914-adf0-8b436ca75f7a storage1 -C3N-03797.WXS.T C3N-03797 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/185a06c7-ad16-4f79-9c1c-199ba99f7bcb/CPT0285180007.WholeExome.RP-1303.bam 19212444149 BAM hg19 185a06c7-ad16-4f79-9c1c-199ba99f7bcb storage1 C3N-03797.WXS.T.hg38 C3N-03797 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8e6d27b-1138-4d47-a6f5-2a6035dcb281/422a6465-56ff-4265-bb86-43cf4b882e46_wxs_gdc_realn.bam 27735760494 BAM hg38 e8e6d27b-1138-4d47-a6f5-2a6035dcb281 storage1 C3N-03800.RNA-Seq.R1.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6980cb7-4d87-452d-ace8-f2419ef4d665/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ NA a6980cb7-4d87-452d-ace8-f2419ef4d665 storage1 C3N-03800.RNA-Seq.R1.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6980cb7-4d87-452d-ace8-f2419ef4d665/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ NA a6980cb7-4d87-452d-ace8-f2419ef4d665 storage1 C3N-03800.RNA-Seq.R2.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9082c1c1-5abd-4a0e-8f6e-750b5dff16e8/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ NA 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 storage1 C3N-03800.RNA-Seq.R2.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9082c1c1-5abd-4a0e-8f6e-750b5dff16e8/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ NA 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 storage1 -C3N-03800.WGS.N C3N-03800 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc71a97b-75d5-48b8-a5e2-a91bf65f43df/CPT0285250002.WholeGenome.RP-2158.bam 25301880952 BAM hg19 bc71a97b-75d5-48b8-a5e2-a91bf65f43df storage1 C3N-03800.WGS.N.hg38 C3N-03800 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6e99476-96a8-4730-89ef-026f274e9488/74161594-9926-4852-9bef-076363ce5266_wgs_gdc_realn.bam 75210206981 BAM hg38 c6e99476-96a8-4730-89ef-026f274e9488 storage1 -C3N-03800.WGS.T C3N-03800 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7aec4a6-89a7-4e53-a246-d7c5fe230c7f/CPT0285220006.WholeGenome.RP-2158.bam 26028547154 BAM hg19 c7aec4a6-89a7-4e53-a246-d7c5fe230c7f storage1 C3N-03800.WGS.T.hg38 C3N-03800 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24e3c427-04e9-489a-bbf6-4015af0f9693/27ccdf5d-88bc-4b87-be27-161ef297a99d_wgs_gdc_realn.bam 77812358866 BAM hg38 24e3c427-04e9-489a-bbf6-4015af0f9693 storage1 -C3N-03800.WXS.N C3N-03800 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb18f6f1-7305-4017-baa1-befeb8540b17/CPT0285250002.WholeExome.RP-1303.bam 32100575262 BAM hg19 eb18f6f1-7305-4017-baa1-befeb8540b17 storage1 C3N-03800.WXS.N.hg38 C3N-03800 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca9914cc-5a12-4203-9c17-2de3a52076c9/74161594-9926-4852-9bef-076363ce5266_wxs_gdc_realn.bam 43605032937 BAM hg38 ca9914cc-5a12-4203-9c17-2de3a52076c9 storage1 -C3N-03800.WXS.T C3N-03800 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21a8209e-d06c-4f45-a068-364e6a2215e4/CPT0285220006.WholeExome.RP-1303.bam 24942224435 BAM hg19 21a8209e-d06c-4f45-a068-364e6a2215e4 storage1 C3N-03800.WXS.T.hg38 C3N-03800 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b91c3e29-9d7c-4b06-b11c-4766adffd8b0/27ccdf5d-88bc-4b87-be27-161ef297a99d_wxs_gdc_realn.bam 35179857229 BAM hg38 b91c3e29-9d7c-4b06-b11c-4766adffd8b0 storage1 C3N-03802.RNA-Seq.R1.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/255a8e1c-dc69-4ec7-a76f-1877b51b4f23/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ NA 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 storage1 C3N-03802.RNA-Seq.R1.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/255a8e1c-dc69-4ec7-a76f-1877b51b4f23/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ NA 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 storage1 C3N-03802.RNA-Seq.R2.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f86f26d6-0c6b-4120-b71f-4fd632f2ec9c/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ NA f86f26d6-0c6b-4120-b71f-4fd632f2ec9c storage1 C3N-03802.RNA-Seq.R2.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f86f26d6-0c6b-4120-b71f-4fd632f2ec9c/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ NA f86f26d6-0c6b-4120-b71f-4fd632f2ec9c storage1 -C3N-03802.WGS.N C3N-03802 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34fbd34a-ba89-4557-a705-0ced6d0cb40d/CPT0280960002.WholeGenome.RP-2158.bam 24435679576 BAM hg19 34fbd34a-ba89-4557-a705-0ced6d0cb40d storage1 C3N-03802.WGS.N.hg38 C3N-03802 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5ac4339-e870-47cf-99c4-4c305dfbcae8/21f596c1-4a26-44b2-8c1b-4697d7884d6f_wgs_gdc_realn.bam 70976473049 BAM hg38 d5ac4339-e870-47cf-99c4-4c305dfbcae8 storage1 -C3N-03802.WGS.T C3N-03802 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a04948ca-045f-407f-9740-559e4f672f82/CPT0285260006.WholeGenome.RP-2158.bam 31983690940 BAM hg19 a04948ca-045f-407f-9740-559e4f672f82 storage1 C3N-03802.WGS.T.hg38 C3N-03802 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14a6db1a-bd53-439a-9fe3-850628f370de/dbd9368c-c526-4f91-b575-85678ca920d4_wgs_gdc_realn.bam 98847773464 BAM hg38 14a6db1a-bd53-439a-9fe3-850628f370de storage1 -C3N-03802.WXS.N C3N-03802 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eaf57764-4a59-4b7c-b752-6b47d9dadb10/CPT0280960002.WholeExome.RP-1303.bam 31107793425 BAM hg19 eaf57764-4a59-4b7c-b752-6b47d9dadb10 storage1 C3N-03802.WXS.N.hg38 C3N-03802 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/873a455c-8270-4254-8033-313e94158f63/21f596c1-4a26-44b2-8c1b-4697d7884d6f_wxs_gdc_realn.bam 42162146910 BAM hg38 873a455c-8270-4254-8033-313e94158f63 storage1 -C3N-03802.WXS.T C3N-03802 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db174c32-951d-458b-9230-6b8ed2d3283a/CPT0285260006.WholeExome.RP-1303.bam 28080869995 BAM hg19 db174c32-951d-458b-9230-6b8ed2d3283a storage1 C3N-03802.WXS.T.hg38 C3N-03802 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f485b85f-858c-41c8-99a5-02d2f889894b/dbd9368c-c526-4f91-b575-85678ca920d4_wxs_gdc_realn.bam 37570077761 BAM hg38 f485b85f-858c-41c8-99a5-02d2f889894b storage1 C3N-03810.RNA-Seq.R1.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fbe432e-3582-4d23-ae52-931b334f2112/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ NA 8fbe432e-3582-4d23-ae52-931b334f2112 storage1 C3N-03810.RNA-Seq.R1.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fbe432e-3582-4d23-ae52-931b334f2112/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ NA 8fbe432e-3582-4d23-ae52-931b334f2112 storage1 C3N-03810.RNA-Seq.R2.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9bb314d-81a3-4b4a-b3c8-935f7db8d048/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ NA c9bb314d-81a3-4b4a-b3c8-935f7db8d048 storage1 C3N-03810.RNA-Seq.R2.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9bb314d-81a3-4b4a-b3c8-935f7db8d048/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ NA c9bb314d-81a3-4b4a-b3c8-935f7db8d048 storage1 -C3N-03810.WGS.N C3N-03810 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e2c679f-7b26-4015-b244-45267471f2e2/CPT0285330002.WholeGenome.RP-2158.bam 23111061366 BAM hg19 2e2c679f-7b26-4015-b244-45267471f2e2 storage1 C3N-03810.WGS.N.hg38 C3N-03810 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f081684-661c-4114-87e5-3ea5943244f4/ca49ed01-ced5-4674-95c9-b77361506dbc_wgs_gdc_realn.bam 70217504692 BAM hg38 4f081684-661c-4114-87e5-3ea5943244f4 storage1 -C3N-03810.WGS.T C3N-03810 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ea41311-ec81-4ccb-b505-ffe1817637e1/CPT0285300006.WholeGenome.RP-2158.bam 28905896477 BAM hg19 1ea41311-ec81-4ccb-b505-ffe1817637e1 storage1 C3N-03810.WGS.T.hg38 C3N-03810 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a8a0945-b68b-403f-8883-e04140b8e788/cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wgs_gdc_realn.bam 86575296711 BAM hg38 7a8a0945-b68b-403f-8883-e04140b8e788 storage1 -C3N-03810.WXS.N C3N-03810 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e44cb506-57f9-4b12-be9a-cc049696d254/CPT0285330002.WholeExome.RP-1303.bam 28716333027 BAM hg19 e44cb506-57f9-4b12-be9a-cc049696d254 storage1 C3N-03810.WXS.N.hg38 C3N-03810 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4157794-616f-4717-8a72-45784b5619d4/ca49ed01-ced5-4674-95c9-b77361506dbc_wxs_gdc_realn.bam 39782441736 BAM hg38 b4157794-616f-4717-8a72-45784b5619d4 storage1 -C3N-03810.WXS.T C3N-03810 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62c4ac3a-788e-453e-b514-8fae7927b604/CPT0285300006.WholeExome.RP-1303.bam 23403510103 BAM hg19 62c4ac3a-788e-453e-b514-8fae7927b604 storage1 C3N-03810.WXS.T.hg38 C3N-03810 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2077b46c-6a73-4349-a5a8-a189fba4a1d0/cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wxs_gdc_realn.bam 30576782514 BAM hg38 2077b46c-6a73-4349-a5a8-a189fba4a1d0 storage1 C3N-03837.RNA-Seq.R1.A C3N-03837 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c/190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R1_001.fastq.gz 5232135560 FASTQ NA 7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c storage1 C3N-03837.RNA-Seq.R1.T C3N-03837 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91df6fd0-bb82-42e3-a4cc-94acc3a2dac5/190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3292865459 FASTQ NA 91df6fd0-bb82-42e3-a4cc-94acc3a2dac5 storage1 @@ -10633,85 +10032,57 @@ C3N-03935.RNA-Seq.R1.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03935.RNA-Seq.R1.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c91740e-2276-47a4-9b32-c7720ab51594/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ NA 4c91740e-2276-47a4-9b32-c7720ab51594 storage1 C3N-03935.RNA-Seq.R2.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87079c71-53a8-4bf0-925d-e914da7bfd96/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ NA 87079c71-53a8-4bf0-925d-e914da7bfd96 storage1 C3N-03935.RNA-Seq.R2.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87079c71-53a8-4bf0-925d-e914da7bfd96/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ NA 87079c71-53a8-4bf0-925d-e914da7bfd96 storage1 -C3N-03935.WGS.N C3N-03935 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d680c188-bf02-4929-8ce0-aaceb1c9d6d6/CPT0285370002.WholeGenome.RP-2158.bam 22774513143 BAM hg19 d680c188-bf02-4929-8ce0-aaceb1c9d6d6 storage1 C3N-03935.WGS.N.hg38 C3N-03935 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d17e3f0-ff4c-4b01-a090-2dc7d653f96e/6d9e79c5-a520-4b3b-bae8-a483281851f4_wgs_gdc_realn.bam 65995432537 BAM hg38 8d17e3f0-ff4c-4b01-a090-2dc7d653f96e storage1 -C3N-03935.WGS.T C3N-03935 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a7426cb5-a1d7-4401-a1bc-ddd7d9ec45ee/CPT0285340006.WholeGenome.RP-2158.bam 24454872786 BAM hg19 a7426cb5-a1d7-4401-a1bc-ddd7d9ec45ee storage1 C3N-03935.WGS.T.hg38 C3N-03935 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abd5362c-b11a-4cfb-9751-6b1041f319cb/9e503f81-06bd-4083-8f68-04dab904125f_wgs_gdc_realn.bam 73242802527 BAM hg38 abd5362c-b11a-4cfb-9751-6b1041f319cb storage1 -C3N-03935.WXS.N C3N-03935 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecfbada8-1f23-48e7-8650-817e8b8f1b1d/CPT0285370002.WholeExome.RP-1303.bam 31920567263 BAM hg19 ecfbada8-1f23-48e7-8650-817e8b8f1b1d storage1 C3N-03935.WXS.N.hg38 C3N-03935 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aff2f741-3432-47fc-a21a-121927b7e96c/6d9e79c5-a520-4b3b-bae8-a483281851f4_wxs_gdc_realn.bam 44665231448 BAM hg38 aff2f741-3432-47fc-a21a-121927b7e96c storage1 -C3N-03935.WXS.T C3N-03935 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f9548fc-e1c4-43e6-aab1-06bf34f7339e/CPT0285340006.WholeExome.RP-1303.bam 30700999800 BAM hg19 4f9548fc-e1c4-43e6-aab1-06bf34f7339e storage1 C3N-03935.WXS.T.hg38 C3N-03935 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4e94091-101c-40bb-bce6-404972b3fa7e/9e503f81-06bd-4083-8f68-04dab904125f_wxs_gdc_realn.bam 43446340788 BAM hg38 f4e94091-101c-40bb-bce6-404972b3fa7e storage1 C3N-03939.RNA-Seq.R1.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f4dd232-5cba-4b97-bd63-f47967a5436a/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ NA 3f4dd232-5cba-4b97-bd63-f47967a5436a storage1 C3N-03939.RNA-Seq.R1.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f4dd232-5cba-4b97-bd63-f47967a5436a/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ NA 3f4dd232-5cba-4b97-bd63-f47967a5436a storage1 C3N-03939.RNA-Seq.R2.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/452a0caf-f993-41ba-9f18-1a1180aeb710/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ NA 452a0caf-f993-41ba-9f18-1a1180aeb710 storage1 C3N-03939.RNA-Seq.R2.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/452a0caf-f993-41ba-9f18-1a1180aeb710/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ NA 452a0caf-f993-41ba-9f18-1a1180aeb710 storage1 -C3N-03939.WGS.N C3N-03939 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/719de53d-9cb1-4d43-8b73-bc277df19224/CPT0285410002.WholeGenome.RP-2158.bam 27430682246 BAM hg19 719de53d-9cb1-4d43-8b73-bc277df19224 storage1 C3N-03939.WGS.N.hg38 C3N-03939 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c84d71d0-5ca9-4237-bab1-93228f81c37e/6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wgs_gdc_realn.bam 81852016126 BAM hg38 c84d71d0-5ca9-4237-bab1-93228f81c37e storage1 -C3N-03939.WGS.T C3N-03939 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba5428f4-d7c6-479a-9214-d7e1a4947ecf/CPT0285390006.WholeGenome.RP-2158.bam 25775708475 BAM hg19 ba5428f4-d7c6-479a-9214-d7e1a4947ecf storage1 C3N-03939.WGS.T.hg38 C3N-03939 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ffecf2d-31f6-48ff-9829-3ad720b0f748/fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wgs_gdc_realn.bam 77742013082 BAM hg38 4ffecf2d-31f6-48ff-9829-3ad720b0f748 storage1 -C3N-03939.WXS.N C3N-03939 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/221aa9d7-8d0d-422b-b89e-868316bf923e/CPT0285410002.WholeExome.RP-1303.bam 25218551391 BAM hg19 221aa9d7-8d0d-422b-b89e-868316bf923e storage1 C3N-03939.WXS.N.hg38 C3N-03939 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96c5d2ef-106f-4362-a6c4-49724e0abe80/6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wxs_gdc_realn.bam 34765297539 BAM hg38 96c5d2ef-106f-4362-a6c4-49724e0abe80 storage1 -C3N-03939.WXS.T C3N-03939 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8dc848c-62f4-4de0-a629-1ba4efd06757/CPT0285390006.WholeExome.RP-1303.bam 16808844495 BAM hg19 b8dc848c-62f4-4de0-a629-1ba4efd06757 storage1 C3N-03939.WXS.T.hg38 C3N-03939 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7292b808-4c7a-4240-a3d3-096db96095b1/fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wxs_gdc_realn.bam 23051245145 BAM hg38 7292b808-4c7a-4240-a3d3-096db96095b1 storage1 C3N-04092.RNA-Seq.R1.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ NA 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 storage1 C3N-04092.RNA-Seq.R1.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ NA 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 storage1 C3N-04092.RNA-Seq.R2.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07a3bbdc-69c2-485b-98b2-82ada22cae69/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ NA 07a3bbdc-69c2-485b-98b2-82ada22cae69 storage1 C3N-04092.RNA-Seq.R2.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07a3bbdc-69c2-485b-98b2-82ada22cae69/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ NA 07a3bbdc-69c2-485b-98b2-82ada22cae69 storage1 -C3N-04092.WGS.N C3N-04092 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/566f7b48-65df-4fb3-87bc-8586884af4f1/CPT0285450002.WholeGenome.RP-2158.bam 24498698839 BAM hg19 566f7b48-65df-4fb3-87bc-8586884af4f1 storage1 C3N-04092.WGS.N.hg38 C3N-04092 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c77804a-0e1e-449d-affb-55a849b06bc3/79ce8e10-2d6f-4d92-a58c-a34c06af7677_wgs_gdc_realn.bam 74020875117 BAM hg38 4c77804a-0e1e-449d-affb-55a849b06bc3 storage1 -C3N-04092.WGS.T C3N-04092 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2bf06983-aea2-41c2-adf3-ff62afc65962/CPT0285440006.WholeGenome.RP-2158.bam 24504031508 BAM hg19 2bf06983-aea2-41c2-adf3-ff62afc65962 storage1 C3N-04092.WGS.T.hg38 C3N-04092 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2545b6fa-59be-403f-9d33-29b33c9fea27/01e34584-fe56-487f-900d-0c82daf338a0_wgs_gdc_realn.bam 74544654961 BAM hg38 2545b6fa-59be-403f-9d33-29b33c9fea27 storage1 -C3N-04092.WXS.N C3N-04092 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02dea684-c120-47a8-9e66-f3ff166d1819/CPT0285450002.WholeExome.RP-1303.bam 27331686699 BAM hg19 02dea684-c120-47a8-9e66-f3ff166d1819 storage1 C3N-04092.WXS.N.hg38 C3N-04092 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf40953c-253a-4b01-afd9-04ad79976e45/79ce8e10-2d6f-4d92-a58c-a34c06af7677_wxs_gdc_realn.bam 37382509699 BAM hg38 bf40953c-253a-4b01-afd9-04ad79976e45 storage1 -C3N-04092.WXS.T C3N-04092 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50e9eb47-f03c-4992-88dd-551c23a4e436/CPT0285440006.WholeExome.RP-1303.bam 26184111709 BAM hg19 50e9eb47-f03c-4992-88dd-551c23a4e436 storage1 C3N-04092.WXS.T.hg38 C3N-04092 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a591e41-81b8-497b-a030-e20bbbf8e555/01e34584-fe56-487f-900d-0c82daf338a0_wxs_gdc_realn.bam 37480467959 BAM hg38 8a591e41-81b8-497b-a030-e20bbbf8e555 storage1 C3N-04094.RNA-Seq.R1.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa31d2b3-82b2-4734-8c22-ac89b732e8a2/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ NA fa31d2b3-82b2-4734-8c22-ac89b732e8a2 storage1 C3N-04094.RNA-Seq.R1.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa31d2b3-82b2-4734-8c22-ac89b732e8a2/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ NA fa31d2b3-82b2-4734-8c22-ac89b732e8a2 storage1 C3N-04094.RNA-Seq.R2.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254472af-7bd3-4dfb-9014-c2dc90560859/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ NA 254472af-7bd3-4dfb-9014-c2dc90560859 storage1 C3N-04094.RNA-Seq.R2.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254472af-7bd3-4dfb-9014-c2dc90560859/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ NA 254472af-7bd3-4dfb-9014-c2dc90560859 storage1 -C3N-04094.WGS.N C3N-04094 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96edcb35-53eb-4666-b388-713a74542f88/CPT0285490002.WholeGenome.RP-2158.bam 32209259574 BAM hg19 96edcb35-53eb-4666-b388-713a74542f88 storage1 C3N-04094.WGS.N.hg38 C3N-04094 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f93ec20-1c38-41a0-8f96-28457caad083/1890659f-5698-4b8f-a0bf-1da6b3791731_wgs_gdc_realn.bam 94794094970 BAM hg38 9f93ec20-1c38-41a0-8f96-28457caad083 storage1 -C3N-04094.WGS.T C3N-04094 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8574b1b2-a42e-4fae-9300-61ae76f62d00/CPT0285460007.WholeGenome.RP-2158.bam 22517447803 BAM hg19 8574b1b2-a42e-4fae-9300-61ae76f62d00 storage1 C3N-04094.WGS.T.hg38 C3N-04094 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57d06724-da21-4c7d-8738-ffd08f512893/917e08bc-e1f6-4a6f-a593-4b99445df33e_wgs_gdc_realn.bam 66930723100 BAM hg38 57d06724-da21-4c7d-8738-ffd08f512893 storage1 -C3N-04094.WXS.N C3N-04094 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e99f6a2-d917-4406-9326-2a9fc2b509ab/CPT0285490002.WholeExome.RP-1303.bam 21093147419 BAM hg19 4e99f6a2-d917-4406-9326-2a9fc2b509ab storage1 C3N-04094.WXS.N.hg38 C3N-04094 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30918018-bf91-418f-9d9f-b7d873524ee0/1890659f-5698-4b8f-a0bf-1da6b3791731_wxs_gdc_realn.bam 28904441295 BAM hg38 30918018-bf91-418f-9d9f-b7d873524ee0 storage1 -C3N-04094.WXS.T C3N-04094 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fe503ff-2f3a-45eb-b1ce-2d64bfdd3ba0/CPT0285460007.WholeExome.RP-1303.bam 22403351746 BAM hg19 1fe503ff-2f3a-45eb-b1ce-2d64bfdd3ba0 storage1 C3N-04094.WXS.T.hg38 C3N-04094 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fb8f474-4c02-4a4e-8281-6472347703c7/917e08bc-e1f6-4a6f-a593-4b99445df33e_wxs_gdc_realn.bam 32627517794 BAM hg38 0fb8f474-4c02-4a4e-8281-6472347703c7 storage1 C3N-04097.RNA-Seq.R1.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e14644a-eeec-4d36-a439-d7defafab519/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ NA 9e14644a-eeec-4d36-a439-d7defafab519 storage1 C3N-04097.RNA-Seq.R1.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e14644a-eeec-4d36-a439-d7defafab519/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ NA 9e14644a-eeec-4d36-a439-d7defafab519 storage1 C3N-04097.RNA-Seq.R2.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1b1a394-d643-496b-b856-60147ea00c1a/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ NA f1b1a394-d643-496b-b856-60147ea00c1a storage1 C3N-04097.RNA-Seq.R2.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1b1a394-d643-496b-b856-60147ea00c1a/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ NA f1b1a394-d643-496b-b856-60147ea00c1a storage1 -C3N-04097.WGS.N C3N-04097 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc560399-532f-4dd8-b751-b8918dce92a0/CPT0285530002.WholeGenome.RP-2158.bam 29954202898 BAM hg19 fc560399-532f-4dd8-b751-b8918dce92a0 storage1 C3N-04097.WGS.N.hg38 C3N-04097 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4784a3d9-c761-4a61-9dac-3d84eb853c59/926063e7-fbde-4313-8074-4ca104eef182_wgs_gdc_realn.bam 89113536785 BAM hg38 4784a3d9-c761-4a61-9dac-3d84eb853c59 storage1 -C3N-04097.WGS.T C3N-04097 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9c5426f-dacd-426f-9a0f-897ccad93344/CPT0285500006.WholeGenome.RP-2158.bam 28363607419 BAM hg19 f9c5426f-dacd-426f-9a0f-897ccad93344 storage1 C3N-04097.WGS.T.hg38 C3N-04097 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b206bbed-72f4-4453-b41b-7af6e8c5555a/dc8d772e-ffad-4cc1-9a32-80000b767f7b_wgs_gdc_realn.bam 86071581874 BAM hg38 b206bbed-72f4-4453-b41b-7af6e8c5555a storage1 -C3N-04097.WXS.N C3N-04097 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0264820-b1e9-4169-9ce4-4ec86ef3df3f/CPT0285530002.WholeExome.RP-1303.bam 33139294412 BAM hg19 e0264820-b1e9-4169-9ce4-4ec86ef3df3f storage1 C3N-04097.WXS.N.hg38 C3N-04097 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9e2e52a-6327-4053-8262-66ca49ec97ee/926063e7-fbde-4313-8074-4ca104eef182_wxs_gdc_realn.bam 45034306382 BAM hg38 f9e2e52a-6327-4053-8262-66ca49ec97ee storage1 -C3N-04097.WXS.T C3N-04097 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af47378d-93eb-4d71-9fd9-19a5fbda4cda/CPT0285500006.WholeExome.RP-1303.bam 16249740413 BAM hg19 af47378d-93eb-4d71-9fd9-19a5fbda4cda storage1 C3N-04097.WXS.T.hg38 C3N-04097 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c394da8c-1cc9-4554-9d4a-5ac062b4aa42/dc8d772e-ffad-4cc1-9a32-80000b767f7b_wxs_gdc_realn.bam 23088909668 BAM hg38 c394da8c-1cc9-4554-9d4a-5ac062b4aa42 storage1 C3N-04098.RNA-Seq.R1.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4772d8e-0ded-4236-8602-1b1dfe51e8df/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ NA e4772d8e-0ded-4236-8602-1b1dfe51e8df storage1 C3N-04098.RNA-Seq.R1.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4772d8e-0ded-4236-8602-1b1dfe51e8df/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ NA e4772d8e-0ded-4236-8602-1b1dfe51e8df storage1 C3N-04098.RNA-Seq.R2.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/129e4b38-443f-4cf9-8e20-f98ccef517c8/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ NA 129e4b38-443f-4cf9-8e20-f98ccef517c8 storage1 C3N-04098.RNA-Seq.R2.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/129e4b38-443f-4cf9-8e20-f98ccef517c8/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ NA 129e4b38-443f-4cf9-8e20-f98ccef517c8 storage1 -C3N-04098.WGS.N C3N-04098 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7750f7a5-f900-492e-bfe8-8eb204bb32c3/CPT0285570002.WholeGenome.RP-2158.bam 27310844142 BAM hg19 7750f7a5-f900-492e-bfe8-8eb204bb32c3 storage1 C3N-04098.WGS.N.hg38 C3N-04098 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cf31016-4283-4728-a22e-b353f72b2ae7/6416d98a-0117-48ec-a6ea-0875e22f55aa_wgs_gdc_realn.bam 81502245485 BAM hg38 4cf31016-4283-4728-a22e-b353f72b2ae7 storage1 -C3N-04098.WGS.T C3N-04098 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d866896c-45d0-4928-8193-ad1e2aca0b4a/CPT0285540007.WholeGenome.RP-2158.bam 24939569712 BAM hg19 d866896c-45d0-4928-8193-ad1e2aca0b4a storage1 C3N-04098.WGS.T.hg38 C3N-04098 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/687ccc83-df37-4a60-acb8-5a6a684de758/884a7198-709f-4946-9e7a-dea9055906df_wgs_gdc_realn.bam 75917029860 BAM hg38 687ccc83-df37-4a60-acb8-5a6a684de758 storage1 -C3N-04098.WXS.N C3N-04098 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c242871c-7c14-4485-9ebc-e61f77f019bf/CPT0285570002.WholeExome.RP-1303.bam 20394067243 BAM hg19 c242871c-7c14-4485-9ebc-e61f77f019bf storage1 C3N-04098.WXS.N.hg38 C3N-04098 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33f39ddb-4185-4905-81a6-52c9429067cc/6416d98a-0117-48ec-a6ea-0875e22f55aa_wxs_gdc_realn.bam 27415183845 BAM hg38 33f39ddb-4185-4905-81a6-52c9429067cc storage1 -C3N-04098.WXS.T C3N-04098 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dafa82a6-dba7-449d-93a1-19b928e9e5ff/CPT0285540007.WholeExome.RP-1303.bam 22554228508 BAM hg19 dafa82a6-dba7-449d-93a1-19b928e9e5ff storage1 C3N-04098.WXS.T.hg38 C3N-04098 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2002b1f2-6753-4744-aca7-282e72f76dfb/884a7198-709f-4946-9e7a-dea9055906df_wxs_gdc_realn.bam 31334787046 BAM hg38 2002b1f2-6753-4744-aca7-282e72f76dfb storage1 C3N-04100.RNA-Seq.R1.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5d4dee6-5523-43c9-902b-c019c3a29533/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ NA d5d4dee6-5523-43c9-902b-c019c3a29533 storage1 C3N-04100.RNA-Seq.R1.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5d4dee6-5523-43c9-902b-c019c3a29533/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ NA d5d4dee6-5523-43c9-902b-c019c3a29533 storage1 C3N-04100.RNA-Seq.R2.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92f769cc-3b94-4805-bef6-3de96959e898/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ NA 92f769cc-3b94-4805-bef6-3de96959e898 storage1 C3N-04100.RNA-Seq.R2.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92f769cc-3b94-4805-bef6-3de96959e898/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ NA 92f769cc-3b94-4805-bef6-3de96959e898 storage1 -C3N-04100.WGS.N C3N-04100 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f74ed3f-e21c-4b44-84ad-49124953f987/CPT0285610002.WholeGenome.RP-2158.bam 21930007345 BAM hg19 7f74ed3f-e21c-4b44-84ad-49124953f987 storage1 C3N-04100.WGS.N.hg38 C3N-04100 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d339a11-7fe1-4768-9bce-01c4d959a1b5/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wgs_gdc_realn.bam 66740897940 BAM hg38 4d339a11-7fe1-4768-9bce-01c4d959a1b5 storage1 -C3N-04100.WGS.T C3N-04100 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51d10bc6-e276-4f15-8be4-8f45643913a0/CPT0285590006.WholeGenome.RP-2158.bam 26982190290 BAM hg19 51d10bc6-e276-4f15-8be4-8f45643913a0 storage1 C3N-04100.WGS.T.hg38 C3N-04100 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6655aea0-8f5c-4a62-813f-4afe372c81a3/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wgs_gdc_realn.bam 78877872512 BAM hg38 6655aea0-8f5c-4a62-813f-4afe372c81a3 storage1 -C3N-04100.WXS.N C3N-04100 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/738934dd-363d-4ce8-a743-616e0e07bfc7/CPT0285610002.WholeExome.RP-1303.bam 28613971741 BAM hg19 738934dd-363d-4ce8-a743-616e0e07bfc7 storage1 C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c20addd-92b7-436e-b8c7-0e202439e2eb/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM hg38 7c20addd-92b7-436e-b8c7-0e202439e2eb storage1 -C3N-04100.WXS.T C3N-04100 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d3f613d-522c-463c-a8bd-b4616bb6745a/CPT0285590006.WholeExome.RP-1303.bam 20792557880 BAM hg19 0d3f613d-522c-463c-a8bd-b4616bb6745a storage1 C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/645e357e-7bdf-4136-812c-e02db7f7fab0/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM hg38 645e357e-7bdf-4136-812c-e02db7f7fab0 storage1 C3N-04113.RNA-Seq.R1.T C3N-04113 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f0d3283-518d-4cbe-ac56-7f4cff984a77/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ NA 9f0d3283-518d-4cbe-ac56-7f4cff984a77 storage1 C3N-04113.RNA-Seq.R1.T C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f0d3283-518d-4cbe-ac56-7f4cff984a77/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ NA 9f0d3283-518d-4cbe-ac56-7f4cff984a77 storage1 @@ -10881,13 +10252,9 @@ C3N-04312.RNA-Seq.R1.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-04312.RNA-Seq.R1.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9ffa766-00b4-43fc-9cdd-d894a2cdce9c/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ NA b9ffa766-00b4-43fc-9cdd-d894a2cdce9c storage1 C3N-04312.RNA-Seq.R2.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7db80f50-b30d-44fc-9bc6-e03eb048a892/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ NA 7db80f50-b30d-44fc-9bc6-e03eb048a892 storage1 C3N-04312.RNA-Seq.R2.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7db80f50-b30d-44fc-9bc6-e03eb048a892/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ NA 7db80f50-b30d-44fc-9bc6-e03eb048a892 storage1 -C3N-04312.WGS.N C3N-04312 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a3c3468-1221-4b91-bc33-9b090e555ab5/CPT0280980002.WholeGenome.RP-2158.bam 23874939224 BAM hg19 9a3c3468-1221-4b91-bc33-9b090e555ab5 storage1 C3N-04312.WGS.N.hg38 C3N-04312 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/014f16a2-6c7b-4b66-b1a8-2e5579964f02/37205469-4d6f-486b-905f-c54392d21b4f_wgs_gdc_realn.bam 71335743020 BAM hg38 014f16a2-6c7b-4b66-b1a8-2e5579964f02 storage1 -C3N-04312.WGS.T C3N-04312 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74fffef0-59b5-41fd-8d10-2d385a875c65/CPT0285670006.WholeGenome.RP-2158.bam 26413654675 BAM hg19 74fffef0-59b5-41fd-8d10-2d385a875c65 storage1 C3N-04312.WGS.T.hg38 C3N-04312 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5e56aed-38b7-45b3-aebe-8a1da8246495/1c1ab64b-1728-442b-9e26-f37a1af24c9f_wgs_gdc_realn.bam 78477381968 BAM hg38 f5e56aed-38b7-45b3-aebe-8a1da8246495 storage1 -C3N-04312.WXS.N C3N-04312 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc94877a-1cb7-4597-8480-977e29c70ed4/CPT0280980002.WholeExome.RP-1303.bam 21334418826 BAM hg19 bc94877a-1cb7-4597-8480-977e29c70ed4 storage1 C3N-04312.WXS.N.hg38 C3N-04312 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8261bf69-e50f-4985-a7ff-67a826adb3b2/37205469-4d6f-486b-905f-c54392d21b4f_wxs_gdc_realn.bam 29415715888 BAM hg38 8261bf69-e50f-4985-a7ff-67a826adb3b2 storage1 -C3N-04312.WXS.T C3N-04312 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/930d98e1-e130-48bd-a15b-58abbaefcfb1/CPT0285670006.WholeExome.RP-1303.bam 24513284506 BAM hg19 930d98e1-e130-48bd-a15b-58abbaefcfb1 storage1 C3N-04312.WXS.T.hg38 C3N-04312 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4edbb076-c48b-46a8-9467-2ebb7b64d243/1c1ab64b-1728-442b-9e26-f37a1af24c9f_wxs_gdc_realn.bam 34483195424 BAM hg38 4edbb076-c48b-46a8-9467-2ebb7b64d243 storage1 C3N-04382.RNA-Seq.R1.A C3N-04382 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00b5e191-d32c-4209-8035-5d23acfffb95/190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4485057847 FASTQ NA 00b5e191-d32c-4209-8035-5d23acfffb95 storage1 C3N-04382.RNA-Seq.R1.T C3N-04382 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/413aaa51-c49d-4e56-a205-ec549d3edc8a/190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R1_001.fastq.gz 4348621087 FASTQ NA 413aaa51-c49d-4e56-a205-ec549d3edc8a storage1 @@ -10949,35 +10316,23 @@ C3N-04683.RNA-Seq.R1.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-04683.RNA-Seq.R1.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4501fe75-7e04-4fc8-9b96-80dc695086b6/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ NA 4501fe75-7e04-4fc8-9b96-80dc695086b6 storage1 C3N-04683.RNA-Seq.R2.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7334afa-2cbe-448d-9768-0bff2678dec7/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ NA e7334afa-2cbe-448d-9768-0bff2678dec7 storage1 C3N-04683.RNA-Seq.R2.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7334afa-2cbe-448d-9768-0bff2678dec7/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ NA e7334afa-2cbe-448d-9768-0bff2678dec7 storage1 -C3N-04683.WGS.N C3N-04683 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/069f7c09-b676-4e5a-ba82-2a9a294626e4/CPT0293500002.WholeGenome.RP-2158.bam 23861570825 BAM hg19 069f7c09-b676-4e5a-ba82-2a9a294626e4 storage1 C3N-04683.WGS.N.hg38 C3N-04683 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3bee196-c66b-45c1-92f3-fb04a65c0b65/83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wgs_gdc_realn.bam 71643728765 BAM hg38 f3bee196-c66b-45c1-92f3-fb04a65c0b65 storage1 -C3N-04683.WGS.T C3N-04683 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d33daf31-0425-4a15-8b2f-481a5eb955d3/CPT0293480006.WholeGenome.RP-2158.bam 26158848666 BAM hg19 d33daf31-0425-4a15-8b2f-481a5eb955d3 storage1 C3N-04683.WGS.T.hg38 C3N-04683 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e7543c1-4ea4-4c3c-96ca-788a5933eb1b/caea80b3-44ef-4e4b-a5a5-91889e0ca761_wgs_gdc_realn.bam 78260836985 BAM hg38 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b storage1 -C3N-04683.WXS.N C3N-04683 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3760cf6-acd6-4c2e-8fb8-a1f0d09458bf/CPT0293500002.WholeExome.RP-1303.bam 23178721077 BAM hg19 c3760cf6-acd6-4c2e-8fb8-a1f0d09458bf storage1 C3N-04683.WXS.N.hg38 C3N-04683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cd843ae-9cf6-4d57-84d1-d569c1e95ddf/83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wxs_gdc_realn.bam 31548967163 BAM hg38 4cd843ae-9cf6-4d57-84d1-d569c1e95ddf storage1 -C3N-04683.WXS.T C3N-04683 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae7f4ae7-797e-4ad8-a827-1459e7f0c6b0/CPT0293480006.WholeExome.RP-1303.bam 20458737584 BAM hg19 ae7f4ae7-797e-4ad8-a827-1459e7f0c6b0 storage1 C3N-04683.WXS.T.hg38 C3N-04683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb548d65-f75d-43a2-8ff7-91f8654f2ea7/caea80b3-44ef-4e4b-a5a5-91889e0ca761_wxs_gdc_realn.bam 29106959762 BAM hg38 eb548d65-f75d-43a2-8ff7-91f8654f2ea7 storage1 C3N-04686.RNA-Seq.R1.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/157280cb-210f-407f-997c-cbd5fbd18578/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ NA 157280cb-210f-407f-997c-cbd5fbd18578 storage1 C3N-04686.RNA-Seq.R1.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/157280cb-210f-407f-997c-cbd5fbd18578/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ NA 157280cb-210f-407f-997c-cbd5fbd18578 storage1 C3N-04686.RNA-Seq.R2.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d47e078-6b42-4a7e-abcc-5a82b3dfd843/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ NA 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 storage1 C3N-04686.RNA-Seq.R2.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d47e078-6b42-4a7e-abcc-5a82b3dfd843/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ NA 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 storage1 -C3N-04686.WGS.N C3N-04686 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8306e62-ec47-4ca0-b8ba-9fa4b7a668e7/CPT0293620002.WholeGenome.RP-2158.bam 22070360060 BAM hg19 e8306e62-ec47-4ca0-b8ba-9fa4b7a668e7 storage1 C3N-04686.WGS.N.hg38 C3N-04686 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1617d7cd-32d7-40c4-92a8-c7d33265aeea/04d7ff8e-1924-477d-a04b-5eaef2815a7d_wgs_gdc_realn.bam 66143723882 BAM hg38 1617d7cd-32d7-40c4-92a8-c7d33265aeea storage1 -C3N-04686.WGS.T C3N-04686 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/224d7c26-b579-4717-864d-ea58579ea40f/CPT0293570006.WholeGenome.RP-2158.bam 26806647950 BAM hg19 224d7c26-b579-4717-864d-ea58579ea40f storage1 C3N-04686.WGS.T.hg38 C3N-04686 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59582a18-0dfc-420d-bfbd-dfd9aac6c58a/c5c81116-8317-4cbd-89c7-d189c6bd58d5_wgs_gdc_realn.bam 79483468119 BAM hg38 59582a18-0dfc-420d-bfbd-dfd9aac6c58a storage1 -C3N-04686.WXS.N C3N-04686 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2e7a4a2-092b-4219-9d0c-f194bde58697/CPT0293620002.WholeExome.RP-1303.bam 26880496920 BAM hg19 b2e7a4a2-092b-4219-9d0c-f194bde58697 storage1 C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8/04d7ff8e-1924-477d-a04b-5eaef2815a7d_wxs_gdc_realn.bam 36653203165 BAM hg38 f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8 storage1 -C3N-04686.WXS.T C3N-04686 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d9a0556-b68f-4487-ada6-7909db5d3e88/CPT0293570006.WholeExome.RP-1303.bam 21163461417 BAM hg19 4d9a0556-b68f-4487-ada6-7909db5d3e88 storage1 C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/349a677b-4595-415c-b4ba-774a966c92c7/c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM hg38 349a677b-4595-415c-b4ba-774a966c92c7 storage1 C3N-04687.RNA-Seq.R1.T C3N-04687 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5813883a-bd76-4717-b554-85107c414177/201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ NA 5813883a-bd76-4717-b554-85107c414177 storage1 C3N-04687.RNA-Seq.R2.T C3N-04687 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88fe2168-5fc0-4f42-87f2-19dceb47c4e3/201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ NA 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 storage1 -C3N-04687.WGS.N C3N-04687 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5168a4c1-d7bf-4315-9416-7ca03219f455/CPT0293690002.WholeGenome.RP-2158.bam 27529329254 BAM hg19 5168a4c1-d7bf-4315-9416-7ca03219f455 storage1 C3N-04687.WGS.N.hg38 C3N-04687 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a12ebbd1-84fa-441b-8b7e-019cbde83059/89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 82172701135 BAM hg38 a12ebbd1-84fa-441b-8b7e-019cbde83059 storage1 -C3N-04687.WGS.T C3N-04687 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78c0a239-fa60-437f-9f48-deed8e1bdf75/CPT0293640006.WholeGenome.RP-2158.bam 24215834475 BAM hg19 78c0a239-fa60-437f-9f48-deed8e1bdf75 storage1 C3N-04687.WGS.T.hg38 C3N-04687 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e2b89fc-c483-476d-96f9-d0dcdbcec179/8d5b75ae-e777-4df1-8837-4a71d060d681_wgs_gdc_realn.bam 70782620714 BAM hg38 0e2b89fc-c483-476d-96f9-d0dcdbcec179 storage1 -C3N-04687.WXS.N C3N-04687 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/201962bb-0a08-42ae-bbeb-70d26f8f2168/CPT0293690002.WholeExome.RP-1303.bam 25262694720 BAM hg19 201962bb-0a08-42ae-bbeb-70d26f8f2168 storage1 C3N-04687.WXS.N.hg38 C3N-04687 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24cdf0cb-e910-4e7b-854d-88a58b9fc6cd/89cc8a15-7059-48f4-b028-36add2ef000e_wxs_gdc_realn.bam 34658403577 BAM hg38 24cdf0cb-e910-4e7b-854d-88a58b9fc6cd storage1 -C3N-04687.WXS.T C3N-04687 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/612866d9-7349-4e34-a5df-b9b8974ceba4/CPT0293640006.WholeExome.RP-1303.bam 18900010222 BAM hg19 612866d9-7349-4e34-a5df-b9b8974ceba4 storage1 C3N-04687.WXS.T.hg38 C3N-04687 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56d88fed-d037-4804-a093-b009c714bd85/8d5b75ae-e777-4df1-8837-4a71d060d681_wxs_gdc_realn.bam 25765521874 BAM hg38 56d88fed-d037-4804-a093-b009c714bd85 storage1 C3N-04688.RNA-Seq.R1.T C3N-04688 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3dfcb302-6978-4bfa-9986-d63485bffa00/20210729_P3_A6_WB7988-Plate3_S6_R1_001.fastq.gz 4495689608 FASTQ NA 3dfcb302-6978-4bfa-9986-d63485bffa00 storage1 C3N-04688.RNA-Seq.R2.T C3N-04688 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4aee9ea-7564-4b34-b48a-6b075d30ac05/20210729_P3_A6_WB7988-Plate3_S6_R2_001.fastq.gz 4665353178 FASTQ NA f4aee9ea-7564-4b34-b48a-6b075d30ac05 storage1 @@ -10987,35 +10342,23 @@ C3N-04691.RNA-Seq.R1.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-04691.RNA-Seq.R1.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b611a73-3ec3-456e-95fd-6f25ee476c28/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ NA 8b611a73-3ec3-456e-95fd-6f25ee476c28 storage1 C3N-04691.RNA-Seq.R2.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a016bfe-4773-486e-be6e-af9ed353c9b5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ NA 0a016bfe-4773-486e-be6e-af9ed353c9b5 storage1 C3N-04691.RNA-Seq.R2.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a016bfe-4773-486e-be6e-af9ed353c9b5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ NA 0a016bfe-4773-486e-be6e-af9ed353c9b5 storage1 -C3N-04691.WGS.N C3N-04691 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9861bacf-115c-4f88-8afd-217c8e872070/CPT0293790002.WholeGenome.RP-2158.bam 22737036630 BAM hg19 9861bacf-115c-4f88-8afd-217c8e872070 storage1 C3N-04691.WGS.N.hg38 C3N-04691 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a1f5582-fc6d-4c7f-9da4-b605a67108ea/cdd22aae-ff9d-430d-a275-1da5f8befaab_wgs_gdc_realn.bam 69525083202 BAM hg38 7a1f5582-fc6d-4c7f-9da4-b605a67108ea storage1 -C3N-04691.WGS.T C3N-04691 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b36d3a4-75cd-4f1d-bd42-a4465f2d1aaf/CPT0293770006.WholeGenome.RP-2158.bam 26615436611 BAM hg19 5b36d3a4-75cd-4f1d-bd42-a4465f2d1aaf storage1 C3N-04691.WGS.T.hg38 C3N-04691 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/705077f1-277d-46d7-85d6-3248b1d8a3db/c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wgs_gdc_realn.bam 79639650961 BAM hg38 705077f1-277d-46d7-85d6-3248b1d8a3db storage1 -C3N-04691.WXS.N C3N-04691 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0140fcd4-d417-4363-9558-629a455e602f/CPT0293790002.WholeExome.RP-1303.bam 27923809616 BAM hg19 0140fcd4-d417-4363-9558-629a455e602f storage1 C3N-04691.WXS.N.hg38 C3N-04691 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3/cdd22aae-ff9d-430d-a275-1da5f8befaab_wxs_gdc_realn.bam 37966628766 BAM hg38 c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3 storage1 -C3N-04691.WXS.T C3N-04691 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e22398a1-ddd9-4518-b3c2-6b3e978a87d4/CPT0293770006.WholeExome.RP-1303.bam 23083766040 BAM hg19 e22398a1-ddd9-4518-b3c2-6b3e978a87d4 storage1 C3N-04691.WXS.T.hg38 C3N-04691 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cfd40cf-be18-4ded-aafc-26e3705fb482/c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wxs_gdc_realn.bam 32312688782 BAM hg38 4cfd40cf-be18-4ded-aafc-26e3705fb482 storage1 C3N-04693.RNA-Seq.R1.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95e19f64-f558-4704-b020-3cc06287e7f4/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ NA 95e19f64-f558-4704-b020-3cc06287e7f4 storage1 C3N-04693.RNA-Seq.R1.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95e19f64-f558-4704-b020-3cc06287e7f4/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ NA 95e19f64-f558-4704-b020-3cc06287e7f4 storage1 C3N-04693.RNA-Seq.R2.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7144248c-c457-48a8-bd20-e742f014d9bd/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ NA 7144248c-c457-48a8-bd20-e742f014d9bd storage1 C3N-04693.RNA-Seq.R2.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7144248c-c457-48a8-bd20-e742f014d9bd/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ NA 7144248c-c457-48a8-bd20-e742f014d9bd storage1 -C3N-04693.WGS.N C3N-04693 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c393eae-279f-43bc-abec-5f4e84caa34c/CPT0293830004.WholeGenome.RP-2158.bam 21452981251 BAM hg19 7c393eae-279f-43bc-abec-5f4e84caa34c storage1 C3N-04693.WGS.N.hg38 C3N-04693 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de5ee410-fb28-490e-81a9-60d05e4039f8/b996ab8e-ae14-42ed-ac60-b74d932c0460_wgs_gdc_realn.bam 63795296473 BAM hg38 de5ee410-fb28-490e-81a9-60d05e4039f8 storage1 -C3N-04693.WGS.T C3N-04693 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c2a3429-a00b-4aa5-958d-bdcadca1ac38/CPT0293800006.WholeGenome.RP-2158.bam 29358675954 BAM hg19 3c2a3429-a00b-4aa5-958d-bdcadca1ac38 storage1 C3N-04693.WGS.T.hg38 C3N-04693 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ccc9794f-4efc-4284-8b1c-2cb5fc33e957/27f4dc0c-6231-4650-a00e-9ccc4e942c89_wgs_gdc_realn.bam 86972627335 BAM hg38 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 storage1 -C3N-04693.WXS.N C3N-04693 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03043151-b2c5-4e51-b2ce-677ad67c8b23/CPT0293830004.WholeExome.RP-1303.bam 30028625002 BAM hg19 03043151-b2c5-4e51-b2ce-677ad67c8b23 storage1 C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fb6bf47-d501-4858-ba49-6e2cd516474a/b996ab8e-ae14-42ed-ac60-b74d932c0460_wxs_gdc_realn.bam 40597818463 BAM hg38 6fb6bf47-d501-4858-ba49-6e2cd516474a storage1 -C3N-04693.WXS.T C3N-04693 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3791b6fc-e492-439c-bf45-0095fcd1a11f/CPT0293800006.WholeExome.RP-1303.bam 48569729300 BAM hg19 3791b6fc-e492-439c-bf45-0095fcd1a11f storage1 C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e/27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM hg38 e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e storage1 C3N-04695.RNA-Seq.R1.T C3N-04695 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/192aec81-2351-4e27-88b7-36549fbf6d8d/201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ NA 192aec81-2351-4e27-88b7-36549fbf6d8d storage1 C3N-04695.RNA-Seq.R2.T C3N-04695 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37a18500-3aa6-42ad-99ed-e1c041194c48/201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ NA 37a18500-3aa6-42ad-99ed-e1c041194c48 storage1 -C3N-04695.WGS.N C3N-04695 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6adf632a-fedb-456f-aad9-67b5c4cd8a7a/CPT0293890002.WholeGenome.RP-2158.bam 22732109080 BAM hg19 6adf632a-fedb-456f-aad9-67b5c4cd8a7a storage1 C3N-04695.WGS.N.hg38 C3N-04695 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fab7e8e1-714b-4798-9ef7-1612394e55d5/dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 66383764365 BAM hg38 fab7e8e1-714b-4798-9ef7-1612394e55d5 storage1 -C3N-04695.WGS.T C3N-04695 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dd2b329-91e9-4246-ba46-b15996db89b0/CPT0293870006.WholeGenome.RP-2158.bam 27471116027 BAM hg19 6dd2b329-91e9-4246-ba46-b15996db89b0 storage1 C3N-04695.WGS.T.hg38 C3N-04695 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1892aa40-a858-4f1d-a3ee-24e84b7d6216/d7f885b4-11bb-4eef-81bf-74643b30908c_wgs_gdc_realn.bam 83658438448 BAM hg38 1892aa40-a858-4f1d-a3ee-24e84b7d6216 storage1 -C3N-04695.WXS.N C3N-04695 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af079cca-f58b-42c0-94d4-28e5d16b9a3e/CPT0293890002.WholeExome.RP-1303.bam 23131222441 BAM hg19 af079cca-f58b-42c0-94d4-28e5d16b9a3e storage1 C3N-04695.WXS.N.hg38 C3N-04695 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bbdc094-e064-4c89-afec-bf59940cfe16/dc406b2d-e0c8-49bf-b1b1-7e1929833382_wxs_gdc_realn.bam 32304960170 BAM hg38 3bbdc094-e064-4c89-afec-bf59940cfe16 storage1 -C3N-04695.WXS.T C3N-04695 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4fb3775-938a-481e-a1f6-8c2fb0ff2226/CPT0293870006.WholeExome.RP-1303.bam 24573077650 BAM hg19 b4fb3775-938a-481e-a1f6-8c2fb0ff2226 storage1 C3N-04695.WXS.T.hg38 C3N-04695 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f792ee2a-c245-4f1f-9ffc-6a9d7178a770/d7f885b4-11bb-4eef-81bf-74643b30908c_wxs_gdc_realn.bam 33758326958 BAM hg38 f792ee2a-c245-4f1f-9ffc-6a9d7178a770 storage1 C3N-04701.RNA-Seq.R1.A C3N-04701 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b03b01be-db81-4ec8-b893-b790fcf1e565/200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R1_001.fastq.gz 4704619016 FASTQ NA b03b01be-db81-4ec8-b893-b790fcf1e565 storage1 C3N-04701.RNA-Seq.R1.T C3N-04701 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57aa2d40-9195-48bf-b4a7-0b78a10f0d63/200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R1_001.fastq.gz 4667721275 FASTQ NA 57aa2d40-9195-48bf-b4a7-0b78a10f0d63 storage1 @@ -11039,13 +10382,9 @@ C3N-04982.RNA-Seq.R2.A C3N-04982 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-04982.RNA-Seq.R2.T C3N-04982 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ad5ffec-1888-46b6-9b5c-c9b84c406aa9/201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ NA 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 storage1 C3N-05039.RNA-Seq.R1.T C3N-05039 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ab25656-a131-45dd-8109-b25ff504557b/201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ NA 6ab25656-a131-45dd-8109-b25ff504557b storage1 C3N-05039.RNA-Seq.R2.T C3N-05039 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65389fb7-97ce-4735-bc64-6092b9173a2a/201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ NA 65389fb7-97ce-4735-bc64-6092b9173a2a storage1 -C3N-05039.WGS.N C3N-05039 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a018a950-4966-4f64-a4ef-d417ddf5ca0a/CPT0375610002.WholeGenome.RP-2158.bam 23424241762 BAM hg19 a018a950-4966-4f64-a4ef-d417ddf5ca0a storage1 C3N-05039.WGS.N.hg38 C3N-05039 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05fa37fb-0df8-498f-8f7f-14f9a735c215/e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 69461606241 BAM hg38 05fa37fb-0df8-498f-8f7f-14f9a735c215 storage1 -C3N-05039.WGS.T C3N-05039 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4428d05f-66c0-4500-b0d6-b31bf646ba74/CPT0375550007.WholeGenome.RP-2158.bam 27433556193 BAM hg19 4428d05f-66c0-4500-b0d6-b31bf646ba74 storage1 C3N-05039.WGS.T.hg38 C3N-05039 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03e5daf7-cc04-4a52-855a-8f776d8655a5/fe17632c-e4bd-4c42-aa43-255206b1a97b_wgs_gdc_realn.bam 82840854167 BAM hg38 03e5daf7-cc04-4a52-855a-8f776d8655a5 storage1 -C3N-05039.WXS.N C3N-05039 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/887088a7-de8b-43bc-af96-5ffb1dd72a0d/CPT0375610002.WholeExome.RP-1303.bam 29288445996 BAM hg19 887088a7-de8b-43bc-af96-5ffb1dd72a0d storage1 C3N-05039.WXS.N.hg38 C3N-05039 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b528bf8e-bae9-4d91-8d62-1746ba1a1ac0/e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wxs_gdc_realn.bam 41040654784 BAM hg38 b528bf8e-bae9-4d91-8d62-1746ba1a1ac0 storage1 -C3N-05039.WXS.T C3N-05039 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c3692de-a4a4-42ad-b89b-279b35f07e0f/CPT0375550007.WholeExome.RP-1303.bam 23372925491 BAM hg19 2c3692de-a4a4-42ad-b89b-279b35f07e0f storage1 C3N-05039.WXS.T.hg38 C3N-05039 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b5da686-f797-4f86-b29f-790686e55120/fe17632c-e4bd-4c42-aa43-255206b1a97b_wxs_gdc_realn.bam 32616896013 BAM hg38 9b5da686-f797-4f86-b29f-790686e55120 storage1 C3N-05069.RNA-Seq.R1.T C3N-05069 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/133e5128-d1a6-494f-8057-5664f0e6290e/20210729_P3_A1_WB7988-Plate3_S1_R1_001.fastq.gz 3349966026 FASTQ NA 133e5128-d1a6-494f-8057-5664f0e6290e storage1 C3N-05069.RNA-Seq.R2.T C3N-05069 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/579f7c4f-e670-42c0-85e1-6d60b1ea8e41/20210729_P3_A1_WB7988-Plate3_S1_R2_001.fastq.gz 3492595143 FASTQ NA 579f7c4f-e670-42c0-85e1-6d60b1ea8e41 storage1 @@ -11081,23 +10420,15 @@ C3N-05100.WGS.N.hg38 C3N-05100 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-05100.WGS.T.hg38 C3N-05100 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e32667cf-b7d8-4ec2-a63a-17497134fd97/5ef62f88-5293-4a68-a523-50eacbd2dc9b_wgs_gdc_realn.bam 57763506632 BAM hg38 e32667cf-b7d8-4ec2-a63a-17497134fd97 storage1 C3N-05114.RNA-Seq.R1.T C3N-05114 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a01510e-f773-49bb-b942-ed13ac1e72a2/201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ NA 0a01510e-f773-49bb-b942-ed13ac1e72a2 storage1 C3N-05114.RNA-Seq.R2.T C3N-05114 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23d53980-2023-4c74-bb48-ff2282011226/201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ NA 23d53980-2023-4c74-bb48-ff2282011226 storage1 -C3N-05114.WGS.N C3N-05114 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38162097-8649-4ff4-b8c4-c53b803608a5/CPT0375900002.WholeGenome.RP-2158.bam 23591039617 BAM hg19 38162097-8649-4ff4-b8c4-c53b803608a5 storage1 C3N-05114.WGS.N.hg38 C3N-05114 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae/e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 69989761070 BAM hg38 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae storage1 -C3N-05114.WGS.T C3N-05114 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d57def0-92d4-4b0f-8e0b-a73387c3674b/CPT0375840007.WholeGenome.RP-2158.bam 29844175746 BAM hg19 0d57def0-92d4-4b0f-8e0b-a73387c3674b storage1 C3N-05114.WGS.T.hg38 C3N-05114 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6/5169afe8-1fb1-459b-b5b6-f28129bc1de1_wgs_gdc_realn.bam 92653420444 BAM hg38 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 storage1 -C3N-05114.WXS.N C3N-05114 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2b66007-8e18-4443-b239-99447327d37c/CPT0375900002.WholeExome.RP-1303.bam 25448556617 BAM hg19 d2b66007-8e18-4443-b239-99447327d37c storage1 C3N-05114.WXS.N.hg38 C3N-05114 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec6ae616-4341-4d27-8a50-698388968128/e8446ae9-fcf6-48e3-8073-0b0ba6396588_wxs_gdc_realn.bam 34460031755 BAM hg38 ec6ae616-4341-4d27-8a50-698388968128 storage1 -C3N-05114.WXS.T C3N-05114 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aeeef8e6-c57b-4416-ba7a-930e5a820a20/CPT0375840007.WholeExome.RP-1303.bam 20791720954 BAM hg19 aeeef8e6-c57b-4416-ba7a-930e5a820a20 storage1 C3N-05114.WXS.T.hg38 C3N-05114 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bede02c2-63fa-4694-bf71-778ceb6bf864/5169afe8-1fb1-459b-b5b6-f28129bc1de1_wxs_gdc_realn.bam 29470990817 BAM hg38 bede02c2-63fa-4694-bf71-778ceb6bf864 storage1 C3N-05135.RNA-Seq.R1.T C3N-05135 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f923cf94-4f61-4f33-8cab-5328f7853280/201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ NA f923cf94-4f61-4f33-8cab-5328f7853280 storage1 C3N-05135.RNA-Seq.R2.T C3N-05135 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bba10325-9b48-47e2-8983-b3687f010e06/201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ NA bba10325-9b48-47e2-8983-b3687f010e06 storage1 -C3N-05135.WGS.N C3N-05135 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/645e182c-a2ad-4329-8e06-7b7798b1b827/CPT0376440002.WholeGenome.RP-2158.bam 23324063857 BAM hg19 645e182c-a2ad-4329-8e06-7b7798b1b827 storage1 C3N-05135.WGS.N.hg38 C3N-05135 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dc48332-6ed2-417b-958f-c1595135fa9e/d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 68301546626 BAM hg38 5dc48332-6ed2-417b-958f-c1595135fa9e storage1 -C3N-05135.WGS.T C3N-05135 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcb1ec0a-99ac-4ca9-961a-4b5ab271f384/CPT0376380005.WholeGenome.RP-2158.bam 26465673099 BAM hg19 bcb1ec0a-99ac-4ca9-961a-4b5ab271f384 storage1 C3N-05135.WGS.T.hg38 C3N-05135 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c50b159a-8d6b-4760-afff-db1dce9ff738/f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wgs_gdc_realn.bam 79724813019 BAM hg38 c50b159a-8d6b-4760-afff-db1dce9ff738 storage1 -C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d01b9a3-f8de-43d8-9f28-277c29919db9/CPT0376440002.WholeExome.RP-1303.bam 25191303128 BAM hg19 1d01b9a3-f8de-43d8-9f28-277c29919db9 storage1 C3N-05135.WXS.N.hg38 C3N-05135 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98ae81ee-90ef-4c56-8a69-5c5b73fecfec/d69369cc-a994-4e4f-af13-4948398b347b_wxs_gdc_realn.bam 34914215861 BAM hg38 98ae81ee-90ef-4c56-8a69-5c5b73fecfec storage1 -C3N-05135.WXS.T C3N-05135 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ae07a67-852d-4882-bd82-b1567a9d411d/CPT0376380005.WholeExome.RP-1303.bam 23767669742 BAM hg19 9ae07a67-852d-4882-bd82-b1567a9d411d storage1 C3N-05135.WXS.T.hg38 C3N-05135 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e098c85d-4df0-4dfb-84e9-3bf91a4e3491/f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wxs_gdc_realn.bam 31921769918 BAM hg38 e098c85d-4df0-4dfb-84e9-3bf91a4e3491 storage1 C3N-05629.RNA-Seq.R1.A C3N-05629 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a8f0eef-c9ac-4a60-bb7f-d7898d725906/200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R1_001.fastq.gz 3782320688 FASTQ NA 1a8f0eef-c9ac-4a60-bb7f-d7898d725906 storage1 C3N-05629.RNA-Seq.R1.T C3N-05629 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f49c621-13e9-4e66-90e3-afc5545d86de/200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R1_001.fastq.gz 2467086846 FASTQ NA 7f49c621-13e9-4e66-90e3-afc5545d86de storage1 @@ -11139,12 +10470,8 @@ C3N-05991.RNA-Seq.R1.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-05991.RNA-Seq.R1.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3fdfc5e-7311-4d86-ac76-83d954c22674/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ NA f3fdfc5e-7311-4d86-ac76-83d954c22674 storage1 C3N-05991.RNA-Seq.R2.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f4a08f1-2571-471f-9eac-c774275f33f4/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ NA 8f4a08f1-2571-471f-9eac-c774275f33f4 storage1 C3N-05991.RNA-Seq.R2.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f4a08f1-2571-471f-9eac-c774275f33f4/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ NA 8f4a08f1-2571-471f-9eac-c774275f33f4 storage1 -C3N-05991.WGS.N C3N-05991 GBM WGS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5795e82-aba0-48f6-8047-c5c550426671/CPT0378610002.WholeGenome.RP-2158.bam 23981701662 BAM hg19 f5795e82-aba0-48f6-8047-c5c550426671 storage1 C3N-05991.WGS.N.hg38 C3N-05991 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39243f84-1aee-49d4-8a00-32c396a850f3/099752ff-7fa5-4eb0-831a-09e5a211d5c3_wgs_gdc_realn.bam 71819625554 BAM hg38 39243f84-1aee-49d4-8a00-32c396a850f3 storage1 -C3N-05991.WGS.T C3N-05991 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28a48366-c183-4b4b-ab8b-bdb8b3cc5b82/CPT0378550006.WholeGenome.RP-2158.bam 29842642374 BAM hg19 28a48366-c183-4b4b-ab8b-bdb8b3cc5b82 storage1 C3N-05991.WGS.T.hg38 C3N-05991 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/050d8938-f282-41da-94a0-94fefe053d4e/0ca72fda-2cdf-415a-b5a4-53470bf3af60_wgs_gdc_realn.bam 93840833290 BAM hg38 050d8938-f282-41da-94a0-94fefe053d4e storage1 -C3N-05991.WXS.N C3N-05991 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182ccfb9-6805-4994-ad0f-98fc9a780909/CPT0378610002.WholeExome.RP-1303.bam 31487695247 BAM hg19 182ccfb9-6805-4994-ad0f-98fc9a780909 storage1 -C3N-05991.WXS.T C3N-05991 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7d2d028-afc9-491c-b8bc-5e4d86ec2394/CPT0378550006.WholeExome.RP-1303.bam 20864411998 BAM hg19 c7d2d028-afc9-491c-b8bc-5e4d86ec2394 storage1 C464694.RNA-Seq.R1.T C464694 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e953a951-3a91-442e-ad44-8ebde2357ba1/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ NA e953a951-3a91-442e-ad44-8ebde2357ba1 storage1 C464694.RNA-Seq.R1.T C464694 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e953a951-3a91-442e-ad44-8ebde2357ba1/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ NA e953a951-3a91-442e-ad44-8ebde2357ba1 storage1 C464694.RNA-Seq.R2.T C464694 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfd4d083-3696-4f1a-9a7b-9613cb26d82d/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ NA dfd4d083-3696-4f1a-9a7b-9613cb26d82d storage1 diff --git a/DCC_Analysis_Summary/README.Y3.md b/DCC_Analysis_Summary/README.Y3.md index 671fc5e..f377f06 100644 --- a/DCC_Analysis_Summary/README.Y3.md +++ b/DCC_Analysis_Summary/README.Y3.md @@ -1,39 +1,39 @@ -Last updated: 11/18/21 +Last updated: 4/19/21 -**BOLD** are new since 10/28/21 +**BOLD** are new since 3/18/22 ## Analysis Summaries - Case counts - Y3 only Pipeline | AML | CCRCC | CM | GBM | HNSCC | LSCC | LUAD | PDA | SAR | UCEC | Total --- | --- | ----- | --- | --- | ----- | ---- | ---- | --- | --- | ---- | --- -Methylation Array | 43 | 260 | 8 | 205 | 111 | 202 | 229 | 164 | 19 | 249 | 1490 -miRNA-Seq | 4 | 82 | 3 | 194 | 22 | 104 | 72 | 164 | 0 | 35 | 680 -RNA-Seq Expression | 42 | 261 | 8 | 189 | 111 | 202 | 229 | 186 | 19 | 252 | 1499 -RNA-Seq Fusion | 0 | 110 | 0 | 69 | 0 | 89 | 109 | 81 | 0 | 170 | 628 -RNA-Seq Transcript + Splicing | 0 | 149 | 0 | 136 | 0 | 89 | 208 | 103 | 0 | 170 | 855 -WGS CNV Somatic | 0 | 258 | 0 | 187 | 111 | 202 | **219**| 166 | 0 | 243 |**1386** -WGS SV | 0 | 258 | 0 | 129 | 111 | 173 | 109 | 108 | 0 | 204 | 1183 -WXS MSI | 0 |**193**| 0 |**71**| 0 | 89 | 108 | 166 | 0 | 104 | **731** -WXS Somatic TD | 0 | 259 | 0 | 185 | 111 | 202 | 218 |**181**| 0 | 233 | **1401** -WXS Somatic SW | 0 |**260**| 0 |**185**| 111 | 202 | 110 |**181**| 0 | 247 |**1296** -WXS Germline | 0 |**259**| 0 |**186**| 111 | 199 | 219 |**166**| 0 | 233 |**1373** +Methylation Array | **115** | 260 | 8 | 205 | 111 | 202 | 229 | 164 | 19 | 249 | **1562** +miRNA-Seq | **83** | 82 | 3 |239| 22 | 104 | 72 | 164 | 0 | 35 | **804** +RNA-Seq Expression | **101** | 261 | 8 | 189 | 111 | 202 | 229 | 186 | 19 | 252 | **1558** +RNA-Seq Fusion | **171** | 110 | 0 |116| 0 | 89 | 109 | 81 | 0 | 170 | **846** +RNA-Seq Transcript + Splicing | **172** | 149 | 0 | 136 | 0 | 89 | 208 | 103 | 0 | 170 | **1027** +WGS CNV Somatic | **29** | 258 | 0 | 187 | 111 | 202 | 219 | 166 | 0 | 243 | **1415** +WGS SV | **35** | 258 | 0 | 129 | 111 | 173 | 109 | 108 | 0 | 204 | **1218** +WXS MSI | **42** | 193 | 0 | 71 | 0 | 89 | 108 | 166 | 0 | 104 | **773** +WXS Somatic TD | **42** | 259 | 0 | 185 | 111 | 202 | 218 | 181 | 0 | 233 | **1443** +WXS Somatic SW | 0 | 260 | 0 | 185 | 111 | 202 | 110 | 181 | 0 | 247 |1296 +WXS Germline | **42** | 259 | 0 | 186 | 111 | 199 |229| 166 | 0 | 233 | **1425** ## All results (Y1, Y2, Y3) - Case counts Pipeline | AML | CCRCC | CM | GBM | HNSCC | LSCC | LUAD | PDA | SAR | UCEC | Total --- | --- | ----- | --- | --- | ----- | ---- | ---- | --- | --- | ---- | --- -Methylation Array | 43 | 260 | 8 | 205 | 111 | 202 | 229 | 164 | 19 | 249 | 1490 -miRNA-Seq | 42 | 261 | 8 | 184 | 111 | 202 | 229 | 164 | 19 | 250 | 1480 -RNA-Seq Expression | 42 | 261 | 8 | 189 | 111 | 202 | 229 | 186 | 19 | 252 | 1499 -RNA-Seq Fusion | 11 | 222 | 8 | 188 | 111 | 202 | 229 | 164 | 19 | 246 | 1400 -RNA-Seq Transcript + Splicing | 1 | 261 | 3 | 234 | 111 | 202 | 218 | 186 | 0 | 246 | 1462 -WGS CNV Somatic | 0 | 258 | 0 | 187 | 111 | 202 | 229 | 166 | 0 | 243 | 1396 -WGS SV | 0 | 258 | 0 | 187 | 111 | 201 | 219 | 166 | 0 | 243 | 1476 -WXS MSI | 0 | 259 | 0 | 188 | 111 | 202 | 219 | 166 | 0 | 247 | 1392 -WXS Somatic TD | 0 | 259 | 0 | 185 | 111 | 202 | 218 | 181 | 0 | 233 | 1401 +Methylation Array | 115 | 260 | 8 | 205 | 111 | 202 | 229 | 164 | 19 | 249 | 1562 +miRNA-Seq | 83 | 261 | 8 | 239 | 111 | 202 | 229 | 164 | 19 | 250 | 1566 +RNA-Seq Expression | 101 | 261 | 8 | 189 | 111 | 202 | 229 | 186 | 19 | 252 | 1558 +RNA-Seq Fusion | 171 | 222 | 8 | 234 | 111 | 202 | 229 | 164 | 19 | 246 | 1606 +RNA-Seq Transcript + Splicing | 172 | 261 | 3 | 234 | 111 | 202 | 218 | 186 | 0 | 246 | 1633 +WGS CNV Somatic | 29 | 258 | 0 | 187 | 111 | 202 | 229 | 166 | 0 | 243 | 1425 +WGS SV | 35 | 258 | 0 | 187 | 111 | 201 | 219 | 166 | 0 | 243 | 1511 +WXS MSI | 42 | 259 | 0 | 188 | 111 | 202 | 219 | 166 | 0 | 247 | 1434 +WXS Somatic TD | 42 | 259 | 0 | 185 | 111 | 202 | 218 | 181 | 0 | 233 | 1443 WXS Somatic SW | 0 | 260 | 0 | 185 | 111 | 202 | 218 | 181 | 0 | 247 | 1404 -WXS Germline | 0 | 259 | 0 | 186 | 111 | 199 | 219 | 166 | 0 | 233 | 1373 +WXS Germline | 42 | 259 | 0 | 186 | 111 | 199 | 229 | 166 | 0 | 233 | 1425 diff --git a/DCC_Analysis_Summary/WXS_Somatic_Variant_SW.DCC_analysis_summary.dat b/DCC_Analysis_Summary/WXS_Somatic_Variant_SW.DCC_analysis_summary.dat index 1bfca9c..ae6d0c3 100644 --- a/DCC_Analysis_Summary/WXS_Somatic_Variant_SW.DCC_analysis_summary.dat +++ b/DCC_Analysis_Summary/WXS_Somatic_Variant_SW.DCC_analysis_summary.dat @@ -90,10 +90,19 @@ C3L-00446 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPT C3L-00447 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00447.withmutect.filtered.maf 64520 MAF 1b7c971198f0f3d838bc98eddf9450d3 C3L-00447.WXS.T.hg38 532f1bc2-2f90-4838-a000-aa75969e323c C3L-00447.WXS.N.hg38 5fcfa123-8827-4519-aefb-b0189ae82dc8 C3L-00448 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00448.withmutect.filtered.maf 221823 MAF de977f0daefd332ac60c91e5b756e362 C3L-00448.WXS.T.hg38 1c240bd3-cd33-44a0-a46b-ac813412bb81 C3L-00448.WXS.N.hg38 6a64be8d-b163-43be-bba5-ed310b4603df C3L-00449 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-00449.Somatic.WXS.maf 64733 MAF 069a5b25ea2bb977505bf80398fbb817 C3L-00449.WXS.T.hg38 497a5093-f4f0-4fbd-b869-77bec7018f5b C3L-00449.WXS.N.hg38 e8723283-d74f-456f-90e8-7a54b0d8abe2 +C3L-00453 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00453_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 23798 MAF 46bef69b30946a5c0a2956a17ce266b5 C3L-00453.WXS.Tbm.hg38 2aa6541b-fbe2-4ae6-abd1-02fe1691cb97 C3L-00453.WXS.Nbc.hg38 1eec226f-34bd-41d9-a5d4-d8c4f28f34eb +C3L-00455 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00455_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 20020 MAF 2284aaf1c0ef84ccef7df7a0fcb83249 C3L-00455.WXS.Tbm.hg38 847fcbbd-e8a4-464a-8e8f-3e65426a8afe C3L-00455.WXS.Nbc.hg38 06d638fc-772d-4333-83ec-0251b848de46 +C3L-00457 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00457_WXS_hg38_Nbc_ADNA_n6qRDW_and_Tbm.withmutect.filtered.maf 71308 MAF 8b9fe410cfb723e3d0ef9347d53d786c C3L-00457.WXS.Tbm.hg38 f92e948a-b6de-4b65-8740-32a0736bb939 C3L-00457.WXS.Nbc.ADNA_n6qRDW.hg38 f7352fa2-f8b2-48ff-8e77-a1850206d093 +C3L-00458 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00458_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 23826 MAF 492911253e2b791e9445810cde5e3d4e C3L-00458.WXS.Tbm.hg38 62a85f23-7204-40ea-af37-b5a6866764b8 C3L-00458.WXS.Nbc.hg38 035bacd5-f005-46d0-a03e-5d6005892ba0 +C3L-00459 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00459_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 42280 MAF 0fa3a9f0947d63f0b911adba35e28ced C3L-00459.WXS.Tbm.hg38 d9cb9b36-252f-4f96-ba42-52a7cd0368eb C3L-00459.WXS.Nbc.hg38 d2fe6d7c-2b20-4742-bb0e-3244cb99dbdc +C3L-00460 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00460_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 30640 MAF 8a2e45affd08f71e6ccb4cb27b921de6 C3L-00460.WXS.Tbm.hg38 3eaa6c75-3173-4349-8bbf-7c0a75ddf28e C3L-00460.WXS.Nbc.hg38 d4f13b45-e7dc-4e8e-bd9b-957ebdd22dbb +C3L-00461 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00461_WXS_hg38_Nbc_ADNA_n6PVk5_and_Tbm.withmutect.filtered.maf 78303 MAF ad82ae54d7b0dca4356bf2896d639d6b C3L-00461.WXS.Tbm.hg38 6e0d1eac-125f-4681-b45d-726b67b3bce2 C3L-00461.WXS.Nbc.ADNA_n6PVk5.hg38 bc5676e8-5b55-4959-b3e1-ed55610fd3f7 +C3L-00465 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00465_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 24320 MAF 683f6fafcdb89808953bc3ffdc950aa3 C3L-00465.WXS.Tbm.hg38 027a8df9-637e-4bf3-a12c-9c1e38dfa923 C3L-00465.WXS.Nbc.hg38 c01f4ba5-1030-49c0-902d-fec56a504d15 C3L-00503 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-00503.Somatic.WXS.maf 30109 MAF 85a6172fd65a2b1ee30da487c18f0e8d C3L-00503.WXS.T.hg38 36693738-4fed-4e19-ad62-16391425c614 C3L-00503.WXS.N.hg38 24b3b72d-c3cb-4dc9-96d2-3e8cf9230b52 C3L-00506 GBM WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-00506.WXS.T.hg38.C3L-00506.withmutect.filtered.maf 89086 MAF 86c093b58793c295ce21ed93107440cb C3L-00506.WXS.T.hg38 5b99bd9e-8ff3-4dcc-a417-16c2a540c0d9 C3L-00506.WXS.N.hg38 a83137eb-0bbe-435b-a04e-fa5eb01d5bf3 C3L-00510 LUAD WXS_Somatic_Variant_SW v1.3 20180125 Y1 /CPTAC3_WashU_hg38/LUAD/WXS_Somatic.LUAD.all.hg38_v1.3_20180125/C3L-00510.Somatic.WXS.maf 55280 MAF 17d9bd4ee19db76b56e6934726dcfc23 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 C3L-00528 GBM WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-00528.WXS.T.hg38.C3L-00528.withmutect.filtered.maf 124677 MAF 43cb6526d913a0f00bd3dbf01d9695a2 C3L-00528.WXS.T.hg38 b40c5d39-56b2-4487-a890-0c70c4ffed9d C3L-00528.WXS.N.hg38 f9daf773-6a74-488a-a8e5-4c410d96accf +C3L-00540 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00540_WXS_hg38_Nbc_and_Tpb.withmutect.filtered.maf 45422 MAF 6507302d96c61365bb21667ce223b4c6 C3L-00540.WXS.Tpb.hg38 33fcee4a-7bcd-4297-8a60-c904b60d0542 C3L-00540.WXS.Nbc.hg38 da611fd3-6c53-4152-bf2e-4a6a4e9a9f0a C3L-00561 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00561.withmutect.filtered.maf 138813 MAF a5af2924b8669b0bdd042e08c69180cf C3L-00561.WXS.T.hg38 51b0205f-d289-4913-981d-e9cb6cc31cb6 C3L-00561.WXS.N.hg38 17be3adb-c798-4e88-a32d-ee6614b361fb C3L-00563 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-00563.Somatic.WXS.maf 54318 MAF 60e3d805fe858cf2f55709cadb91fa38 C3L-00563.WXS.T.hg38 1b3536a2-9329-4dd7-a180-fdeb3e6c96e8 C3L-00563.WXS.N.hg38 f80735d2-6a7e-4d58-965d-5b3b48520bd0 C3L-00568 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-00568.Somatic.WXS.maf 258453 MAF 300d7a1ef58a212d928b46e680304e03 C3L-00568.WXS.T.hg38 8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f C3L-00568.WXS.N.hg38 63c3f570-84a2-4548-b619-ed7c70a38485 @@ -118,6 +127,7 @@ C3L-00606 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/C C3L-00607 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00607.withmutect.filtered.maf 144328 MAF bfe916232f277228dd3e6c1c1a6c19a8 C3L-00607.WXS.T.hg38 98e189cf-1d64-47af-a377-bf3dbfb7779f C3L-00607.WXS.N.hg38 a9d8ee54-11e2-4725-876d-64a004b8dd78 C3L-00608 CCRCC WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-00608.WXS.T.hg38.C3L-00608.withmutect.filtered.maf 32449 MAF 8b05e00d5356e0b2c3cb15eca616348c C3L-00608.WXS.T.hg38 43df9351-95d7-4e54-a648-1617c8bd78a0 C3L-00608.WXS.N.hg38 5921110d-309e-4bfa-81de-fbb2351e5973 C3L-00610 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00610.withmutect.filtered.maf 102809 MAF 315c3e19dd199e30d8e3d63740ef96d2 C3L-00610.WXS.T.hg38 0dfd6c4e-b55b-4ac1-8139-8e6679e5d213 C3L-00610.WXS.N.hg38 7d5b0498-e194-42ae-8401-0b33a3c095a1 +C3L-00614 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00614_WXS_hg38_Nbc_and_Tpb.withmutect.filtered.maf 37745 MAF aade4c5c7b0c4cb9cbb4c73436ff74e1 C3L-00614.WXS.Tpb.hg38 74a7355e-e1eb-4907-8356-43c0e90c369b C3L-00614.WXS.Nbc.hg38 5f205cdc-4bf7-429f-8eb7-12d1720e26ca C3L-00622 PDA WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-00622.Somatic.WXS.maf 39908 MAF 8e22b629a415fc382125d0a37d185031 C3L-00622.WXS.T.hg38 352d339b-f5e3-4c40-a835-d11b7c5bd67f C3L-00622.WXS.N.hg38 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 C3L-00622 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-00622.WXS.T.hg38.C3L-00622.withmutect.filtered.maf 68949 MAF 055ceaf0821bd550f2c688516a1a4523 C3L-00622.WXS.T.hg38 72d992cf-f5a3-4a05-a8c4-c087ab3c321a C3L-00622.WXS.N.hg38 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 C3L-00622 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-00622.WXS.T.hg38.high_cov.C3L-00622.withmutect.filtered.maf 76148 MAF 4d539de3f8e84e9e98707f1426cbb866 C3L-00622.WXS.T.hg38.high_cov d1bcfd14-e445-4d20-885b-e3b3a32daf0d C3L-00622.WXS.N.hg38 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 @@ -149,6 +159,8 @@ C3L-00795 CCRCC WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/CCRCC/C C3L-00796 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00796.withmutect.filtered.maf 179761 MAF bb31bbac1ed0f9b5c0836a3d40f17ced C3L-00796.WXS.T.hg38 1be1b056-c206-40a4-a86a-c4e9f0603acb C3L-00796.WXS.N.hg38 f671cd0d-6c12-48ee-80fd-44bf196617fa C3L-00799 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00799.withmutect.filtered.maf 137742 MAF e825abcb5c365496976ae9599f3318cd C3L-00799.WXS.T.hg38 6f4bb964-9069-47a2-9330-0329623d85e8 C3L-00799.WXS.N.hg38 35d4a4d5-b1d1-40f8-80ec-95b563912a40 C3L-00800 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00800.withmutect.filtered.maf 81935 MAF 31d285cf0b1fad0fef578c38d70f972b C3L-00800.WXS.T.hg38 248e2530-f079-46bd-9aa0-fe592a878707 C3L-00800.WXS.N.hg38 e4502b00-9363-45db-91de-98f49c8c032b +C3L-00807 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00807_WXS_hg38_Nbc_and_Tpb.withmutect.filtered.maf 56215 MAF 2adf3a11d2fa684b33d38a6612272b55 C3L-00807.WXS.Tpb.hg38 e06ccd34-1fcb-45f5-9293-08c3bf9e0fd1 C3L-00807.WXS.Nbc.hg38 ed532c19-95de-41e3-91b8-a96ac0770176 +C3L-00810 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-00810_WXS_hg38_Nbc_and_Tpb.withmutect.filtered.maf 52443 MAF 124eafc6dfe7a8d191876df4c5c688ce C3L-00810.WXS.Tpb.hg38 cd4b8592-4d3e-4d27-84e8-14adcbffb9d1 C3L-00810.WXS.Nbc.hg38 95b24b1e-a608-40d0-ae95-f20672efac6d C3L-00812 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00812.withmutect.filtered.maf 143322 MAF 649e3e9d489b4736c2775af25c61a0c6 C3L-00812.WXS.T.hg38 cd47be26-4d00-4834-92bc-7aa9331ff9df C3L-00812.WXS.N.hg38 50ce4759-7b32-46df-a29b-85f815322c83 C3L-00813 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00813.withmutect.filtered.maf 189318 MAF fd822344f71f7b24f1ab4c90966f2531 C3L-00813.WXS.T.hg38 72b80bc9-60ad-49fd-96e1-811ffb846fa8 C3L-00813.WXS.N.hg38 9fe97cd7-d49a-45db-af65-a0a28862b539 C3L-00814 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-00814.withmutect.filtered.maf 176913 MAF 9924fe2659dcdd093a4934bebe74ef55 C3L-00814.WXS.T.hg38 1abd1b8e-e04c-4cd8-ab14-a4b2c8ddec89 C3L-00814.WXS.N.hg38 8660d0f5-aeaf-4fbd-9a83-9bfb0ab32442 @@ -275,6 +287,9 @@ C3L-01158 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC C3L-01160 PDA WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-01160.Somatic.WXS.maf 70240 MAF 329bde5a239afd292a0922dd2a5c0a31 C3L-01160.WXS.T.hg38 9de76634-b251-4bdd-805d-5070367b7dc9 C3L-01160.WXS.N.hg38 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 C3L-01160 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-01160.WXS.T.BULK_NkkyJMp.hg38.high_cov.C3L-01160.withmutect.filtered.maf 168933 MAF e98eadc49f13e713a11cf45eed51f0f5 C3L-01160.WXS.T.BULK_NkkyJMp.hg38.high_cov ad37577b-d536-4929-9cbc-cb39d4bb9969 C3L-01160.WXS.N.hg38 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 C3L-01160 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-01160.WXS.T.CORE_ERRmwz0.hg38.core.high_cov.C3L-01160.withmutect.filtered.maf 157683 MAF 4ffe31dbf96ff7a9d0872aef93a91856 C3L-01160.WXS.T.CORE_ERRmwz0.hg38.core.high_cov b515de0e-fcee-4a88-85f6-29e4dc115ccc C3L-01160.WXS.N.hg38 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 +C3L-01202 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01202_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 16409 MAF bff48dae0665f36c252b1ff889e7ecc5 C3L-01202.WXS.Tbm.hg38 f646b462-2c4e-4530-a55a-0b86c3b28f3e C3L-01202.WXS.Nbc.hg38 27a3e95a-5366-4bd7-949d-a684996b8f00 +C3L-01205 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01205_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 37327 MAF 6bbd7fd576b7ea58eff2701ba7bf1b9e C3L-01205.WXS.Tbm.hg38 12cc671b-78a3-445f-835a-33611c8cd599 C3L-01205.WXS.Nbc.hg38 671e95de-5f1a-4e05-8d45-2a0a3c129ea4 +C3L-01210 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01210_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 36494 MAF e52d2fc52028b0badcf4d7b945183aae C3L-01210.WXS.Tbm.hg38 b71ffbe9-4c35-49bc-958d-406ec97bfb7b C3L-01210.WXS.Nbc.hg38 f122fdef-99c4-4d86-be9f-080233cf4113 C3L-01232 GBM WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-01232.withmutect.filtered.maf 123921 MAF 6fe5515e99cbcce0e4c530f53661108b C3L-01232.WXS.T.hg38 6da28b7b-b148-4c49-97ee-d4587b058a46 C3L-01232.WXS.N.hg38 a65f1db8-170a-4ec2-a20b-e6deff964e2c C3L-01237 HNSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-01237.withmutect.filtered.maf 301718 MAF 56afc082b0509490201c009370df6fef C3L-01237.WXS.T.hg38 81f3c16c-d03f-440d-9785-1f8b052761a7 C3L-01237.WXS.N.hg38 40c6aa8c-c701-4687-af81-78a019003241 C3L-01246 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-01246.Somatic.WXS.maf 72549 MAF 89e6c73ddf2a24286238fd6615f24ad7 C3L-01246.WXS.T.hg38 67ae0bf3-c217-40d2-9e0f-031c88d3d165 C3L-01246.WXS.N.hg38 e51f6394-96cc-4d48-954b-a578ccea4a6b @@ -297,6 +312,9 @@ C3L-01285 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPT C3L-01286 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-01286.withmutect.filtered.maf 235563 MAF ee9c1c5ef730324413fc0477e0e45ef1 C3L-01286.WXS.T.hg38 b7647bbe-e07f-45e9-84e3-1d0073c81f28 C3L-01286.WXS.N.hg38 c44e27d0-9c27-42c1-8a29-760ae836bab5 C3L-01287 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-01287.withmutect.filtered.maf 154911 MAF d0deaa9c58139a372bfcdcf0242e14e0 C3L-01287.WXS.T.hg38 e58d856a-e047-41f2-8700-4a7f61158cd4 C3L-01287.WXS.N.hg38 8f61ee95-ee30-47d2-b678-3b345ff918f8 C3L-01288 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-01288.withmutect.filtered.maf 263804 MAF a1524068ec91cb2c961596cd2970a9e9 C3L-01288.WXS.T.hg38 793b9e3b-e9e1-4cb9-b6d1-be313f148496 C3L-01288.WXS.N.hg38 30271039-79b2-4395-8541-6dea8620563e +C3L-01291 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01291_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 48606 MAF d4a4d32d9edd17b080193d7f5f57895d C3L-01291.WXS.Tbm.hg38 29d40427-ebf5-4487-993e-99d03f36a7d2 C3L-01291.WXS.Nbc.hg38 ce1cd257-2854-48af-b7e7-0e6abe9c0ddc +C3L-01295 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01295_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 10317 MAF 9aa9758dcf3922421440dae04c4cadf7 C3L-01295.WXS.Tbm.hg38 9b4a0fda-6245-4696-95e2-236053b5f6d9 C3L-01295.WXS.Nbc.hg38 c0286d1a-54de-4aa6-a763-290c5d4d7436 +C3L-01296 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01296_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 25714 MAF b569fe1214d52b9c6357e484d95a9a04 C3L-01296.WXS.Tbm.hg38 95be4e99-82b0-4a37-b764-9403df736448 C3L-01296.WXS.Nbc.hg38 59dbd329-6f4d-4083-a95a-7fda90c46df9 C3L-01302 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-01302.withmutect.filtered.maf 165075 MAF cce7b47c1187633f032b56a1aa94da5f C3L-01302.WXS.T.hg38 d891cd39-a2a4-4c81-b8db-35da9d0188f3 C3L-01302.WXS.N.hg38 12676e7d-1514-4931-8e91-855e1cc3169d C3L-01304 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-01304.Somatic.WXS.maf 49205 MAF adfee04f63c50fee3cd02c8599c0a44f C3L-01304.WXS.T.hg38 3df8fea4-d4ec-484d-a89c-33fe123dedc8 C3L-01304.WXS.N.hg38 abdfac63-1c07-4f0b-878b-e230e90fa27a C3L-01307 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-01307.Somatic.WXS.maf 40184 MAF bdd34223661d1a85e59b506deb471ed5 C3L-01307.WXS.T.hg38 25baf71c-839d-4432-9960-59f47e1c37d7 C3L-01307.WXS.N.hg38 88cb812e-8dbb-4315-b15d-2209fadb6c43 @@ -363,6 +381,8 @@ C3L-01687 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC C3L-01689 PDA WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-01689.Somatic.WXS.maf 45605 MAF ce4a36df91095faf5e75040c7d7abf04 C3L-01689.WXS.T.hg38 00bf0247-9154-461a-ba35-264fb2cb6687 C3L-01689.WXS.N.hg38 642cddf7-2f67-4d03-9635-06c554458f3c C3L-01689 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-01689.WXS.T.DEEP_v6DZXg.hg38.C3L-01689.withmutect.filtered.maf 113479 MAF d6d25e2b1bf902832d667adfa7257c4a C3L-01689.WXS.T.DEEP_v6DZXg.hg38 fda1347e-80b9-4cac-ab47-d6625b0fed2f C3L-01689.WXS.N.hg38 642cddf7-2f67-4d03-9635-06c554458f3c C3L-01689 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-01689.WXS.T.hg38.high_cov.C3L-01689.withmutect.filtered.maf 105521 MAF e4bcf7ece1273df59460487d09575d1f C3L-01689.WXS.T.hg38.high_cov 84b33e50-751c-41df-a998-e13d2d37eed0 C3L-01689.WXS.N.hg38 642cddf7-2f67-4d03-9635-06c554458f3c +C3L-01696 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01696_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 11596 MAF 735d2cc65aea9556e8f57579fd7c2f9f C3L-01696.WXS.Tbm.hg38 fdcb0e80-77b9-452e-8101-0cbf5ae73ca6 C3L-01696.WXS.Nbc.hg38 291df1e9-343e-40f1-8819-22284ab7b9ab +C3L-01700 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-01700_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 16473 MAF 57420033884d15d236503343bfb1f201 C3L-01700.WXS.Tbm.hg38 373bc943-3146-4c77-920e-ce7624d3eb57 C3L-01700.WXS.Nbc.hg38 676720f7-87ab-4d27-b690-8f1cb45a3553 C3L-01702 PDA WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-01702.Somatic.WXS.maf 2245 MAF 340dcb0f5c06f69e563f40f4a0a66d62 C3L-01702.WXS.T.hg38 477cb053-f14e-4957-85c4-9029aa12e15a C3L-01702.WXS.N.hg38 60696094-cd7b-40cf-9e6d-d51915c7a511 C3L-01702 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-01702.WXS.T.DEEP_v6Rm7r.hg38.C3L-01702.withmutect.filtered.maf 23166 MAF 0810236e7a219b84cda08e1a1db50f0f C3L-01702.WXS.T.DEEP_v6Rm7r.hg38 72ae9b49-9baa-4db9-a3be-46eebb8e3589 C3L-01702.WXS.N.hg38 60696094-cd7b-40cf-9e6d-d51915c7a511 C3L-01702 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-01702.WXS.T.hg38.high_cov.C3L-01702.withmutect.filtered.maf 12918 MAF ac7bde546e2b4d9d12be2a2e951e8716 C3L-01702.WXS.T.hg38.high_cov 6a4fd777-cb3b-4fc1-9eb0-3e65847a51f9 C3L-01702.WXS.N.hg38 60696094-cd7b-40cf-9e6d-d51915c7a511 @@ -430,6 +450,10 @@ C3L-02125 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPT C3L-02127 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-02127.Somatic.WXS.maf 190293 MAF 4ac609df49260d6421b44d395578a368 C3L-02127.WXS.T.hg38 c464bc7c-0990-477d-8ad0-c18fce5e8b70 C3L-02127.WXS.N.hg38 e51e79c4-6465-4d37-834a-06eb40ebcfdc C3L-02129 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-02129.withmutect.filtered.maf 118008 MAF 4a259ac15dfd9534e2408c804a5a7b46 C3L-02129.WXS.T.hg38 55b1ffba-76ba-4e18-9598-3f316509545c C3L-02129.WXS.N.hg38 d708f0fa-314a-48f6-a20c-60c78c15aa2e C3L-02130 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-02130.Somatic.WXS.maf 312608 MAF 2e6597b1c71ed129752bda234d550ae6 C3L-02130.WXS.T.hg38 a8b8f6dd-6bba-4cb8-9e54-0b994c32c452 C3L-02130.WXS.N.hg38 22df6e39-0947-4591-82c0-6be07cbb8dbe +C3L-02132 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-02132_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 65426 MAF 1989440886d053380037f655cf66e239 C3L-02132.WXS.Tbm.hg38 1c3ecf5e-2355-4379-9ec4-cd5543003f4d C3L-02132.WXS.Nbc.hg38 944c53f5-4f80-46ae-ac76-fed39b14b783 +C3L-02135 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-02135_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 11451 MAF 2469b0c6019b80af85abcef63ae84daf C3L-02135.WXS.Tbm.hg38 d81d0a6f-c812-4a35-bff1-4b2a8795d532 C3L-02135.WXS.Nbc.hg38 b67743e8-1d2b-41c4-8804-cafc31c7dfd4 +C3L-02136 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-02136_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 26565 MAF 3ee06d2f1934d592c4828abe8e9b8ba9 C3L-02136.WXS.Tbm.hg38 fe10d155-2ee0-43e9-ad96-bb770e51f219 C3L-02136.WXS.Nbc.hg38 ef54310e-87bb-46f0-b8ba-c029b4be97cc +C3L-02137 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-02137_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 52917 MAF 58630e0e69558b9a446fde9193568149 C3L-02137.WXS.Tbm.hg38 c595f4b2-cd8a-460e-8cc2-524b6c1133b0 C3L-02137.WXS.Nbc.hg38 dbc64b57-2e3c-41c5-b4f3-c37d2ea0526c C3L-02163 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-02163.Somatic.WXS.maf 222988 MAF 828f24206d3d8c02a19cf231aa882432 C3L-02163.WXS.T.hg38 de5f9de8-a1b2-4d7a-bb21-e568208241e9 C3L-02163.WXS.N.hg38 5efb9f9b-8b67-4185-90af-3b6742fe3a23 C3L-02164 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-02164.Somatic.WXS.maf 5805 MAF 54591a70f1085ff223a7fadbcadc1457 C3L-02164.WXS.T.hg38 cae3426d-a2fb-46ba-852a-73364bf7f28d C3L-02164.WXS.N.hg38 2619f144-48ba-440e-9317-d91207766303 C3L-02165 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-02165.withmutect.filtered.maf 821109 MAF 9428e9e8754c7eb41b4cb1751038df14 C3L-02165.WXS.T.hg38 8120f159-e48c-4db7-9993-aaaf42cfbd70 C3L-02165.WXS.N.hg38 c0bac254-c578-433f-866b-45c5cadb3b81 @@ -610,6 +634,7 @@ C3L-03266 GBM WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC C3L-03268 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-03268.withmutect.filtered.maf 97063 MAF a791f6ec5e533a25198eb872d46bbe02 C3L-03268.WXS.T.hg38 488ea73b-b9e9-4682-9282-1bc3f466a6c4 C3L-03268.WXS.N.hg38 07c4ff2f-d0d6-41e6-83d9-6d1da73ca4fb C3L-03271 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-03271.withmutect.filtered.maf 86656 MAF 6df2a2084856810bac48fb4da6eb5687 C3L-03271.WXS.T.hg38 5132dfb4-2478-4eb4-80c0-64dd44f603f6 C3L-03271.WXS.N.hg38 e04a60d6-16f7-4194-a160-cec7e0aecf24 C3L-03272 LSCC WXS_Somatic_Variant_SW v1.5 20191211 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.5_LSCC.Y2_20191211/C3L-03272.Somatic.WXS.maf 271337 MAF 2db51154475def29083e5d953bdb3c1c C3L-03272.WXS.T.hg38 caaab6de-d522-4508-aca4-9451506e9692 C3L-03272.WXS.N.hg38 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 +C3L-03308 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-03308_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 60295 MAF 52aba765f2ed16ebaa9afe297def1566 C3L-03308.WXS.Tbm.hg38 0d6b19e7-cafc-43e4-9401-37a8da579764 C3L-03308.WXS.Nbc.hg38 9ea0ec47-41c9-4b2e-badb-ccfd4979751a C3L-03348 PDA WXS_Somatic_Variant_SW v1.6 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_PDA_CCRCC_batch1.SW_20211117/C3L-03348_BIOTEXT_1w1kj4Z.withmutect.filtered.maf 34357 MAF e6cb26f72e7cdd65c03278604a0a59bc C3L-03348.WXS.T.BIOTEXT_1w1kj4Z.hg38 e5bd8d9b-8c06-4f9a-a17c-5659a79c6d5f C3L-03348.WXS.N.BIOTEXT_kRQWDPN.hg38 b3a30b22-91ff-4ed5-a5f4-06a07d5353bc C3L-03348 PDA WXS_Somatic_Variant_SW v1.6 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_PDA_CCRCC_batch1.SW_20211117/C3L-03348_BIOTEXT_2k4lRWM.withmutect.filtered.maf 55579 MAF 9454d12e1cba4083056fb1bb03f64a10 C3L-03348.WXS.T.BIOTEXT_2k4lRWM.hg38 a5a5ff62-5ea9-404c-a530-7e15987c1b52 C3L-03348.WXS.N.BIOTEXT_kRQWDPN.hg38 b3a30b22-91ff-4ed5-a5f4-06a07d5353bc C3L-03348 PDA WXS_Somatic_Variant_SW v1.6 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_PDA_CCRCC_batch1.SW_20211117/C3L-03348_BIOTEXT_Z6OE40Q.withmutect.filtered.maf 43009 MAF 04ea1e73a8e986563ab95c1ab014b811 C3L-03348.WXS.T.BIOTEXT_Z6OE40Q.hg38 9b9d6e4e-7609-4a76-bd56-2dba820b91d5 C3L-03348.WXS.N.BIOTEXT_kRQWDPN.hg38 b3a30b22-91ff-4ed5-a5f4-06a07d5353bc @@ -642,6 +667,10 @@ C3L-03407 GBM WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC C3L-03462 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-03462.withmutect.filtered.maf 392114 MAF dd17f0675376461539210be79d6285a2 C3L-03462.WXS.T.hg38 b6ea39b9-3905-4a69-a15f-d53196972172 C3L-03462.WXS.N.hg38 ecc7cdc6-0632-4be3-b1a3-e70193029cda C3L-03463 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-03463.withmutect.filtered.maf 502880 MAF ac3fa4c4e3990ffae95c25c78fec8d9c C3L-03463.WXS.T.hg38 ec373367-df0f-4ee9-9659-e46a271d8aa5 C3L-03463.WXS.N.hg38 671f8fd0-8de5-45e8-889f-480694a1eb6a C3L-03467 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-03467.Somatic.WXS.maf 62621 MAF 009e8fee72751329e9342fe492d96778 C3L-03467.WXS.T.hg38 6e033d20-aa62-4b5c-b0b5-53c814dbfb97 C3L-03467.WXS.N.hg38 0392e112-504b-44ce-89da-b59b56c76388 +C3L-03491 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-03491_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 17206 MAF fdae8ce31eea31dda30933f450f360bc C3L-03491.WXS.Tbm.hg38 dc2ade4a-0f50-4fe1-8616-b77def9db25a C3L-03491.WXS.Nbc.hg38 30f741cb-008a-44cd-9d8f-3a51ab85cb6b +C3L-03493 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-03493_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 18990 MAF 2792427c8f7a2a80cd083924557e641b C3L-03493.WXS.Tbm.hg38 7833029e-f8e7-4481-9b5d-46141e8ba4b1 C3L-03493.WXS.Nbc.hg38 2b57bf62-bfa7-4f9f-a2f5-985fd8b85e32 +C3L-03496 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-03496_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 54344 MAF 0d692c8b3747fd5d1171d2dcab710d46 C3L-03496.WXS.Tbm.hg38 18b9610c-7a64-44f9-b3e8-1bfaf0febd8e C3L-03496.WXS.Nbc.hg38 278c38d9-9ca8-4c92-80cc-936a7d8f85d0 +C3L-03497 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-03497_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 49046 MAF 17a2bb8b282b9f2bbea5f2a513932476 C3L-03497.WXS.Tbm.hg38 a4ef610e-d021-431b-9e73-76fe7a7ae06a C3L-03497.WXS.Nbc.hg38 348a2f38-a72f-45bf-8a42-1e6ee6119a96 C3L-03589 UCEC WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-03589.Somatic.WXS.maf 756255 MAF 303967b70cf33f585fb5a0f90c4df331 C3L-03589.WXS.T.hg38 c38f1f62-a3fb-4a49-a51b-8ff31ececee1 C3L-03589.WXS.N.hg38 39e343ca-ccae-406e-b79e-46c1b13d585c C3L-03622 PDA WXS_Somatic_Variant_SW v1.6 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_PDA_CCRCC_batch1.SW_20211117/C3L-03622_BIOTEXT_VON89nX.withmutect.filtered.maf 46672 MAF 266b7cbc5a4a7d2e3fe483713be1bd4f C3L-03622.WXS.T.BIOTEXT_VON89nX.hg38 5e95894a-5022-4570-92a5-2f8aac3ad1ef C3L-03622.WXS.N.BIOTEXT_kRoJ1nE.hg38 606ae6c5-5352-4dd1-bbc2-f1c7f877a247 C3L-03622 PDA WXS_Somatic_Variant_SW v1.6 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_PDA_CCRCC_batch1.SW_20211117/C3L-03622_BIOTEXT_W68gRox.withmutect.filtered.maf 47179 MAF dca9b8a1dc5aadf57b2b7d015d14a871 C3L-03622.WXS.T.BIOTEXT_W68gRox.hg38 acc533f2-f879-437d-ad63-4da6676c5558 C3L-03622.WXS.N.BIOTEXT_kRoJ1nE.hg38 606ae6c5-5352-4dd1-bbc2-f1c7f877a247 @@ -722,6 +751,12 @@ C3L-04085 GBM WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC C3L-04090 GBM WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04090.withmutect.filtered.maf 123572 MAF 3c0dd101e923f1fee00914c4034de659 C3L-04090.WXS.T.hg38 6b65e8bd-213a-4815-b2cc-ff4733cccf2d C3L-04090.WXS.N.hg38 cb068c31-d894-43ba-b308-3b1f97d8c15e C3L-04213 GBM WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04213.withmutect.filtered.maf 133581 MAF b9f828d43527a15373ff7e9ecf902934 C3L-04213.WXS.T.hg38 7c9986e7-ede7-4495-974b-2095f534a7f6 C3L-04213.WXS.N.hg38 3cc11d4a-5a91-438c-9143-57a046ea5a10 C3L-04216 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04216.withmutect.filtered.maf 639403 MAF b3f11ae8ec7335a501ac688b72e3c4e0 C3L-04216.WXS.T.hg38 4c7de826-5434-4e0c-85bf-cc0a9ee5f3fa C3L-04216.WXS.N.hg38 0021b0fd-e27f-4263-a44f-0af1347d4e39 +C3L-04241 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04241_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 12190 MAF eba550d4ae8f82836a7dc1d833f5d95f C3L-04241.WXS.Tbm.hg38 67bb8beb-c429-4831-b486-bce2c83284cc C3L-04241.WXS.Nbc.hg38 15389de3-14df-4a8a-ae92-d7fa0edf5a1d +C3L-04242 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04242_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 17101 MAF 8d826743daff071d0ab8e5b82dc5e734 C3L-04242.WXS.Tbm.hg38 179afd3f-ea49-49ce-ad35-bd1198888fcd C3L-04242.WXS.Nbc.hg38 e9215e98-3c2f-4f4c-ac38-06ac91e1a611 +C3L-04244 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04244_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 55898 MAF b6cccf9988430df27fcf9c0088202c9d C3L-04244.WXS.Tbm.hg38 947b36be-2be0-429c-a8ce-c78d1dedad79 C3L-04244.WXS.Nbc.hg38 c72cec50-cbdf-466a-95fb-1dd6de93f6d4 +C3L-04245 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04245_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 43469 MAF 6399ab197e22a1bb3957b1b2aa829bac C3L-04245.WXS.Tbm.hg38 c417e8e9-ff83-4ed2-a4ca-558e2be1d51d C3L-04245.WXS.Nbc.hg38 f8eb0ba7-5fe1-4f29-9611-b92247e40c4d +C3L-04250 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04250_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 50850 MAF 4b18d9e12c0c42deaebe02d6a94e02f6 C3L-04250.WXS.Tbm.hg38 e8bf2908-cee5-45e5-8f8c-9c8702937d29 C3L-04250.WXS.Nbc.hg38 4fd2af8b-5f99-4023-b9d8-4f33a604ecc1 +C3L-04265 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04265_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 54327 MAF feb74603e5c802796d27c2f07f80dbe5 C3L-04265.WXS.Tbm.hg38 80c95db4-ec3f-4be0-b4ae-217eeee992c5 C3L-04265.WXS.Nbc.hg38 6d54295f-abfd-4903-b7da-a345847aba8c C3L-04336 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04336.withmutect.filtered.maf 573495 MAF a6f4d92d0f56dfe4b9d2e06309b052d2 C3L-04336.WXS.T.hg38 2b354936-5716-47c8-b574-3bdb088524be C3L-04336.WXS.N.hg38 1a24671b-f4be-4246-a1f1-019bd0be9375 C3L-04339 GBM WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04339.withmutect.filtered.maf 96886 MAF 597ae84b30d5120ba3ba1fa4b25d31e3 C3L-04339.WXS.T.hg38 d105a1df-c44b-46eb-aba8-6bd7b2a87af5 C3L-04339.WXS.N.hg38 210f66ea-881d-49ae-b32c-3d39ddac7941 C3L-04354 HNSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04354.withmutect.filtered.maf 365947 MAF 104d2858b66233e31f6fe5535fc642a9 C3L-04354.WXS.T.hg38 36098590-cd66-4240-83d5-39a28eaa73a3 C3L-04354.WXS.N.hg38 1a7fe815-6001-4550-b337-5883804884d4 @@ -748,6 +783,8 @@ C3L-04479 PDA WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC C3L-04479 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-04479.WXS.T.hg38.high_cov.C3L-04479.withmutect.filtered.maf 76886 MAF ee82d5962b4f0ec512222ce4c15a41cc C3L-04479.WXS.T.hg38.high_cov a7adae54-d0b6-45aa-a4a1-cdc16fb06e79 C3L-04479.WXS.N.hg38 cc12df9a-deba-436f-87a4-b924e725c1ee C3L-04495 PDA WXS_Somatic_Variant_SW v1.6 20201119 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_WXS_Somatic_Variant_SW.1120_20201119/C3L-04495.Somatic.WXS.maf 22181 MAF ff31269f6996d1dc5ed7c7d349760b23 C3L-04495.WXS.T.hg38 82da46b7-04c4-4c96-af56-66afde853593 C3L-04495.WXS.N.hg38 19d20b8d-942f-4e2d-8084-e9e4d00175f8 C3L-04495 PDA WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-04495.WXS.T.hg38.high_cov.C3L-04495.withmutect.filtered.maf 38572 MAF 79b87b8ddb7ef2d1647f1037fcd67af5 C3L-04495.WXS.T.hg38.high_cov cc7ace0c-4b41-4b67-977b-7669e12f1547 C3L-04495.WXS.N.hg38 19d20b8d-942f-4e2d-8084-e9e4d00175f8 +C3L-04505 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04505_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 52800 MAF 8e54bbaacef8bb3a82c6a3c5970b5625 C3L-04505.WXS.Tbm.hg38 7e4a4227-1c33-498b-921a-1098fafdf043 C3L-04505.WXS.Nbc.hg38 43f12e45-3829-4c28-bb38-135b74b32a68 +C3L-04508 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04508_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 28817 MAF 3c400c6d1b5e4a1f424eb32c47a0e794 C3L-04508.WXS.Tbm.hg38 92e1a7b5-1222-4ece-b133-dbe4ea5695ef C3L-04508.WXS.Nbc.hg38 810d5168-1549-4f11-b0ed-c9dce053aae2 C3L-04537 GBM WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04537.withmutect.filtered.maf 92289 MAF 2be88962f73c2ef9be6c6f6346521493 C3L-04537.WXS.T.hg38 d2ea7a2e-737f-4704-8731-492f2cd1c8e9 C3L-04537.WXS.N.hg38 84320c1f-226b-431c-8240-fe28ad4a4894 C3L-04539 GBM WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04539.withmutect.filtered.maf 130070 MAF 1b2ef42c3444ad31eb266b342ad1d158 C3L-04539.WXS.T.hg38 44d32def-ea17-4d6a-97a9-4326d8d2d45b C3L-04539.WXS.N.hg38 5b6bf6d8-1ba8-40f2-b72c-7209488eb46d C3L-04728 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04728.withmutect.filtered.maf 708146 MAF 09f87f1898e999ff341bfe6eb45d8ea9 C3L-04728.WXS.T.hg38 70b75b48-32b4-4ccd-9ce6-80a326fbf594 C3L-04728.WXS.N.hg38 b7856a20-f923-458e-9f77-0ad88a1f8cec @@ -756,6 +793,9 @@ C3L-04746 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPT C3L-04749 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04749.withmutect.filtered.maf 424354 MAF 13e05f79098b78de200f2754c0fe708d C3L-04749.WXS.T.hg38 ae75aed4-2200-4897-a3b5-a6c86ecd93bc C3L-04749.WXS.N.hg38 5a04c54a-46c6-4b22-9f57-e957bab13f58 C3L-04757 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04757.withmutect.filtered.maf 2028099 MAF a69865adf711428c52d43eee76e3dd78 C3L-04757.WXS.T.hg38 f912f910-33c2-4d2c-9796-675563706221 C3L-04757.WXS.N.hg38 73164e58-3cba-4a7a-a6ab-a37395c5ebe4 C3L-04759 LUAD WXS_Somatic_Variant_SW v1.6 20200520 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Somatic_Variant_SW_v1.6_LUAD_GBM_166_20200520/C3L-04759.withmutect.filtered.maf 73129 MAF bb37ec73fb800f80094fa13783707856 C3L-04759.WXS.T.hg38 db2c016d-d894-4b43-b668-6408130899cc C3L-04759.WXS.N.hg38 857d5e77-fb80-45a8-86d5-b2e15ae3f8ea +C3L-04764 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04764_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 49643 MAF e46cbbde6255b843a577d2431c9bbef8 C3L-04764.WXS.Tbm.hg38 9144f1a0-97cf-41ef-ac03-971f5226082f C3L-04764.WXS.Nbc.hg38 76c541bd-e0d0-4820-b4c8-f74fc46dd369 +C3L-04766 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04766_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 33444 MAF c9edac499b7493cce6e6c261cc0a89e3 C3L-04766.WXS.Tbm.hg38 ac77c05a-238c-4406-bef4-04d31792f409 C3L-04766.WXS.Nbc.hg38 c126f3de-a3ce-4001-951e-2474f086a1b6 +C3L-04767 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-04767_WXS_hg38_Nbc_and_Tbm.withmutect.filtered.maf 49900 MAF ff6f735fce2fef962c43462abbc684da C3L-04767.WXS.Tbm.hg38 a24305f0-d979-4cf3-ba16-3c31dd7a20fc C3L-04767.WXS.Nbc.hg38 2380ca7e-3224-488c-b0e0-baebea395923 C3L-04786 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04786.withmutect.filtered.maf 258097 MAF 6da9e7d46ac255427bfa049f620afbd0 C3L-04786.WXS.T.hg38 15f12617-0664-4865-884b-d0b00331f2a2 C3L-04786.WXS.N.hg38 487e9694-73fd-4a5f-ab4d-1d2171cd4757 C3L-04791 HNSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04791.withmutect.filtered.maf 914819 MAF 0a2d681205f3291ff7186c490129c1b2 C3L-04791.WXS.T.hg38 0bfcfa27-88b4-495c-9035-ad1a74135e1d C3L-04791.WXS.N.hg38 b9bd40ed-4000-4486-9101-a8c417b881eb C3L-04792 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-04792.withmutect.filtered.maf 551520 MAF f9f740e8ea01b510a2ad059f383cae2e C3L-04792.WXS.T.hg38 d2f325d0-bdd6-4030-a786-4fe0452985d4 C3L-04792.WXS.N.hg38 32bcb2fe-f0b7-4347-9d61-d007a3612005 @@ -800,6 +840,7 @@ C3L-05225 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPT C3L-05239 GBM WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-05239.withmutect.filtered.maf 120174 MAF 5735d699eec91225c4debb5fc840c8e5 C3L-05239.WXS.T.hg38 73dcd24f-0fde-46b2-a48b-11f402c43c99 C3L-05239.WXS.N.hg38 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb C3L-05239 GBM WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3L-05239.WXS.T.hg38.C3L-05239.withmutect.filtered.maf 120174 MAF 5735d699eec91225c4debb5fc840c8e5 C3L-05239.WXS.T.hg38 73dcd24f-0fde-46b2-a48b-11f402c43c99 C3L-05239.WXS.N.hg38 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb C3L-05369 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-05369.withmutect.filtered.maf 724832 MAF ed16cbf52bd8b173e065e0df02e278d5 C3L-05369.WXS.T.hg38 43c332c1-41fb-4c23-b161-1bde175ded3c C3L-05369.WXS.N.hg38 b8139e05-7f50-4251-bfe1-aeb22fa0d2df +C3L-05386 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3L-05386_WXS_hg38_Nbc_and_Tpb.withmutect.filtered.maf 37521 MAF 25ada5f64f57ceee43e58d064a10cf2b C3L-05386.WXS.Tpb.hg38 ad4db99e-f314-4049-915d-d80b7d6920d8 C3L-05386.WXS.Nbc.hg38 8236c897-0ac6-4158-b6b9-0335142cf267 C3L-05392 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-05392.withmutect.filtered.maf 457566 MAF 05ea67e04fd0533711a48ac4835bb73f C3L-05392.WXS.T.hg38 55674770-033e-409b-8848-fab55bf0aefc C3L-05392.WXS.N.hg38 3c1747f9-b395-4f57-9c6d-3fd731fa0c78 C3L-05393 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-05393.withmutect.filtered.maf 480770 MAF 9fa95963d7e6b2a8f941be068f798159 C3L-05393.WXS.T.hg38 6b5e6508-4d27-4b2f-8cf7-8c92bff08893 C3L-05393.WXS.N.hg38 03b2b28f-19f2-4d74-87aa-1051a41b3128 C3L-05394 LSCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3L-05394.withmutect.filtered.maf 569814 MAF 3999ea409f6b0b6beb8034d63632ab35 C3L-05394.WXS.T.hg38 a3106845-5fda-4228-a746-2aeeab0af29e C3L-05394.WXS.N.hg38 92279fdc-602b-4ca8-8b1a-349ca7d1c358 @@ -899,6 +940,7 @@ C3N-00437 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/C C3N-00438 CCRCC WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3N-00438.WXS.T.hg38.C3N-00438.withmutect.filtered.maf 46704 MAF 9700591d37760d642d78549d0da8d790 C3N-00438.WXS.T.hg38 c3706227-e7b3-4aee-977d-c1120230677b C3N-00438.WXS.N.hg38 a69f4df8-531f-4b29-9841-b515bc1bf81e C3N-00439 CCRCC WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3N-00439.WXS.T.hg38.C3N-00439.withmutect.filtered.maf 315032 MAF 70a0cc21740840945bfb327046f30c53 C3N-00439.WXS.T.hg38 61b0760a-8be3-48d8-8cf8-ed7ea80223e7 C3N-00439.WXS.N.hg38 7b515dc9-e674-4429-a972-dc2881b2d808 C3N-00440 CCRCC WXS_Somatic_Variant_SW v1.6 20211029 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_1021_20211029/C3N-00440.WXS.T.hg38.C3N-00440.withmutect.filtered.maf 175786 MAF ff73bec4c5f0117c4bb2728a96ef540c C3N-00440.WXS.T.hg38 2c44d632-8d2f-43d2-a41d-8ed9855a653e C3N-00440.WXS.N.hg38 936a305c-09eb-45e2-8946-2316fcbe3efe +C3N-00466 AML WXS_Somatic_Variant_SW v1.7 20220517 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Somatic_Variant_SW_v1.7_CPTAC3_AML_batch1_20220517/C3N-00466_WXS_hg38_Nbc_and_Tpb.withmutect.filtered.maf 30287 MAF df3e811061fedf3196089a8317d583f8 C3N-00466.WXS.Tpb.hg38 02f8d03c-1ec4-4a2a-a3fe-4582d19c7b5a C3N-00466.WXS.Nbc.hg38 59f07b0c-05bb-4ac1-9e1c-1f4f7751620d C3N-00491 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3N-00491.withmutect.filtered.maf 137243 MAF 7907ce90761303abb878f338ad652084 C3N-00491.WXS.T.hg38 f0699b2a-8bda-49dc-8796-9c84f81672c6 C3N-00491.WXS.N.hg38 7392d32c-52df-4dd6-a9d0-e6484e76e636 C3N-00492 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3N-00492.withmutect.filtered.maf 58443 MAF cf9893ddc6e40d9dc4769257d94e63d0 C3N-00492.WXS.T.hg38 addcc625-919f-4b3b-927f-9fc0366a48f7 C3N-00492.WXS.N.hg38 9cf80f38-78a2-4635-a5bb-47785d7d5d08 C3N-00494 CCRCC WXS_Somatic_Variant_SW v1.6 20210915 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Somatic_Variant_SW_v1.6_batch_821_20210915/C3N-00494.withmutect.filtered.maf 212337 MAF e718dd8c672b9a80dd3d7c6b9fe2c807 C3N-00494.WXS.T.hg38 d13873ad-167d-40e3-b2e4-5a829a1810fc C3N-00494.WXS.N.hg38 b619cdc5-a036-42f3-8e92-276a81a52866