diff --git a/DCC_Analysis_Summary/WXS_Germline.DCC_analysis_summary.dat b/DCC_Analysis_Summary/WXS_Germline.DCC_analysis_summary.dat index 6417ec7..f6323bb 100644 --- a/DCC_Analysis_Summary/WXS_Germline.DCC_analysis_summary.dat +++ b/DCC_Analysis_Summary/WXS_Germline.DCC_analysis_summary.dat @@ -7,6 +7,32 @@ 11LU022 LUAD WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/11LU022.filtered.AD.5.noLongINDELS.vcf.gz 6873827 VCF 9ea7397dc31481de93c18e175b245dec 11LU022.WXS.N.hg38 afd56e8e-f82d-4fb1-b019-2b032c763b85 11LU035 LUAD WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1_Germline_WXS.779_20201209/11LU035.filtered.ROI.AD.5.INDELS.NS.vcf.gz 708205 VCF c32000669c078a443fd91d1a26ba3002 11LU035.WXS.N.hg38 7ac15e13-9ad5-43ec-9ab4-85844b7d218b 11LU035 LUAD WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/11LU035.filtered.AD.5.noLongINDELS.vcf.gz 8420662 VCF 9f1b58cac4b9f0a230599e078b74cf72 11LU035.WXS.N.hg38 7ac15e13-9ad5-43ec-9ab4-85844b7d218b +C1230738 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C1230738.filtered.AD.5.noLongIndels.vcf.gz 4147933 VCF c1e51401666d98dc656599aad94cb63f C1230738.WXS.N.hg38 55926090-7cd6-4cf3-b401-206767350691 +C1245129 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C1245129.filtered.AD.5.noLongIndels.vcf.gz 3867713 VCF 723fd0309526ccdcb741cf8012d9b06f C1245129.WXS.N.hg38 db118e85-6218-469d-8655-42d3bf3b75ef +C204057 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C204057.filtered.AD.5.noLongIndels.vcf.gz 3961584 VCF cbd6c0420bd388f7d058e1a3b0573738 C204057.WXS.N.hg38 0c1806b6-b54a-45ab-8f07-881b500abb78 +C207624 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C207624.filtered.AD.5.noLongIndels.vcf.gz 3893675 VCF bc58a7a587885f049fb483c122c2f49d C207624.WXS.N.hg38 79625f39-4daa-494d-8913-7ed53fc923a8 +C208854 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C208854.filtered.AD.5.noLongIndels.vcf.gz 4245350 VCF 0d9799a7478464ae7d35b621567c5243 C208854.WXS.N.hg38 58560d7d-dc88-405c-ac9c-7a5af669cbcc +C217710 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C217710.filtered.AD.5.noLongIndels.vcf.gz 4415455 VCF e49971861eb61e5619e4a20a7323a1b3 C217710.WXS.N.hg38 21d37f10-b599-4797-b425-f15427444632 +C219555 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C219555.filtered.AD.5.noLongIndels.vcf.gz 4278548 VCF 2e293983126a8cb3873fe055a008591d C219555.WXS.N.hg38 6c88f523-a5c3-411d-9915-73415a0c6c10 +C223491 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C223491.filtered.AD.5.noLongIndels.vcf.gz 3800781 VCF b82194a4fcef9c5d99c355042e6d04c5 C223491.WXS.N.hg38 6930c8e7-67ee-4f60-9feb-a4ea5410ffb7 +C224106 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C224106.filtered.AD.5.noLongIndels.vcf.gz 4404845 VCF eefdd46aed664abca05af834d38ba68e C224106.WXS.N.hg38 027df754-bfba-4dd3-a19e-66052fdfd928 +C224967 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C224967.filtered.AD.5.noLongIndels.vcf.gz 4219267 VCF 0051522bd79b0b2f7f581cc6c054cdb5 C224967.WXS.N.hg38 d02d8d09-e626-45ba-b5d5-a1910e38405f +C229764 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C229764.filtered.AD.5.noLongIndels.vcf.gz 4154299 VCF a008ab482b55d86c71c9c8838d561245 C229764.WXS.N.hg38 b39d806b-6907-4b17-b822-b9f17b2d8be2 +C231855 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C231855.filtered.AD.5.noLongIndels.vcf.gz 3596319 VCF f7bb8952c27d2569a083277b277f1b98 C231855.WXS.N.hg38 d03b4742-4fce-4819-8017-5644f76432ac +C234192 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C234192.filtered.AD.5.noLongIndels.vcf.gz 3920645 VCF d56e5ed94257c4e94f92d4ad4fa26cf2 C234192.WXS.N.hg38 a4bab68e-9662-4e8a-8b06-8db9204db099 +C2415597 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C2415597.filtered.AD.5.noLongIndels.vcf.gz 3926478 VCF b13f0023bdd8fe3afdfb0a7d07ad066e C2415597.WXS.N.hg38 dce2d5b9-9319-4e33-8a41-b9ead0147389 +C243048 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C243048.filtered.AD.5.noLongIndels.vcf.gz 4051890 VCF 740ce613ce60bfabeb7135eb0ff8de54 C243048.WXS.N.hg38 8a82aa6f-8b08-4afa-8518-9a26dd06c832 +C243909 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C243909.filtered.AD.5.noLongIndels.vcf.gz 4427055 VCF 1fb46f4675d50d68c62b2d49940d84e1 C243909.WXS.N.hg38 3dd2f03b-0318-4a8e-b8b6-531f33492686 +C247230 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C247230.filtered.AD.5.noLongIndels.vcf.gz 4077723 VCF 49ac2f923b01e35f606ff0b583b6c1ec C247230.WXS.N.hg38 086861a1-1e33-4c25-b509-38a0c0f4b1e6 +C259161 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C259161.filtered.AD.5.noLongIndels.vcf.gz 3959878 VCF 2c523e094896568003777d09837f5af4 C259161.WXS.N.hg38 a5ab0154-a15f-43d2-971f-55ba37282546 +C266664 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C266664.filtered.AD.5.noLongIndels.vcf.gz 3634410 VCF b9a55d9e643c2197a6288d0fddbf8317 C266664.WXS.N.hg38 71300e5d-68de-495d-ba73-68637b1ff049 +C283515 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C283515.filtered.AD.5.noLongIndels.vcf.gz 4120729 VCF 7feacad60a021523f3ce8698cccac243 C283515.WXS.N.hg38 679408e2-ec25-4d10-add0-74685052f3f9 +C287328 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C287328.filtered.AD.5.noLongIndels.vcf.gz 4107720 VCF b54f7781048155bedb9dd516f7129044 C287328.WXS.N.hg38 15e46e1d-5773-424e-9e9b-3707fd58322a +C289419 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C289419.filtered.AD.5.noLongIndels.vcf.gz 4103800 VCF 9f4ca6232b42388672e53c9cbd556dad C289419.WXS.N.hg38 2d7988a7-00be-41aa-89f9-05b70794185e +C298152 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C298152.filtered.AD.5.noLongIndels.vcf.gz 4232323 VCF d6791a09498ffc7882d6cf1faccbf5f1 C298152.WXS.N.hg38 353a8df5-cb48-4786-81c4-74d7ad90a33d +C317832 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C317832.filtered.AD.5.noLongIndels.vcf.gz 4433703 VCF dd3fc9d3f63132d9cf87a40e6f3a651d C317832.WXS.N.hg38 2c9924aa-a2fe-4497-ad2d-c730d2f900b5 +C330255 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C330255.filtered.AD.5.noLongIndels.vcf.gz 3838352 VCF 1069caac0309b3fab3844ca9cbc53e17 C330255.WXS.N.hg38 79e34d08-036d-433f-97da-111f791d1978 +C383391 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C383391.filtered.AD.5.noLongIndels.vcf.gz 3901633 VCF c9aca21a74421e426082ce449bfdf214 C383391.WXS.N.hg38 5ddee6c2-988a-4b6a-9594-ffc03d9da680 C3L-00001 LUAD WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-00001.filtered.ROI.AD.5.INDELS.NS.vcf.gz 678890 VCF f66f988ba766ea30523b33c6437e7aa8 C3L-00001.WXS.N.hg38 df589c6d-37e7-4878-9453-ded1a3ca5e17 C3L-00001 LUAD WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-00001.filtered.AD.5.noLongINDELS.vcf.gz 6103459 VCF d4d2a0ae17ef983023e03da2d682caa1 C3L-00001.WXS.N.hg38 df589c6d-37e7-4878-9453-ded1a3ca5e17 C3L-00004 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-00004.filtered.ROI.AD.5.INDELS.NS.vcf.gz 663531 VCF ac0ad81ba9d14bae9a1540e50c2aa639 C3L-00004.WXS.N.hg38 1dee4e84-b617-43a2-add1-c68c5e36bcec @@ -188,6 +214,7 @@ C3L-00608 CCRCC WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRC C3L-00610 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-00610.filtered.ROI.AD.5.INDELS.NS.vcf.gz 675660 VCF 12850ef356c2b6b509268dc363a94406 C3L-00610.WXS.N.hg38 7d5b0498-e194-42ae-8401-0b33a3c095a1 C3L-00610 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-00610.filtered.AD.5.noLongINDELS.vcf.gz 6621123 VCF dd1ef583d1e340d62b3d1980836fc92b C3L-00610.WXS.N.hg38 7d5b0498-e194-42ae-8401-0b33a3c095a1 C3L-00614 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-00614.filtered.AD.5.noLongIndels.vcf.gz 3766690 VCF 94b33e889be4d2883043af7a811d5c79 C3L-00614.WXS.Nbc.hg38 5f205cdc-4bf7-429f-8eb7-12d1720e26ca +C3L-00617 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-00617.filtered.AD.5.noLongIndels.vcf.gz 3642516 VCF 2405185498a0f3989bf561bd89764c52 C3L-00617.WXS.Nbc.hg38 330d8216-962d-487b-9f5b-c57c7ffb7706 C3L-00622 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-00622.filtered.ROI.AD.5.INDELS.NS.vcf.gz 667659 VCF b8a8a927787e89ea171bf91c31e2fc43 C3L-00622.WXS.N.hg38 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 C3L-00622 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-00622.filtered.AD.5.noLongINDELS.vcf.gz 6551540 VCF f4d63eb0ab6abb369f1a9c707f59af11 C3L-00622.WXS.N.hg38 5bd0d4cc-13f1-46e3-9a8e-2bd4949ecda8 C3L-00625 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-00625.filtered.ROI.AD.5.INDELS.NS.vcf.gz 677607 VCF e91214274344e384f67b7efb1db7d548 C3L-00625.WXS.N.hg38 b7634f4b-db0d-458d-9d20-2053b98254dd @@ -380,6 +407,10 @@ C3L-01157 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_ C3L-01157 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-01157.filtered.AD.5.noLongINDELS.vcf.gz 5980270 VCF 1341990890404705f2581f42ebc84845 C3L-01157.WXS.N.hg38 4c548d4d-a644-43a2-ae5d-7d7b7ba59ac6 C3L-01158 PDA WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3L-01158.filtered.AD.5.noLongINDELS.vcf.gz 6909040 VCF f2455a3d9630493dd3387aea56a6eabd C3L-01158.WXS.N.hg38 65ade05f-b8cc-4d7d-b501-cd91d08e5885 C3L-01160 PDA WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3L-01160.filtered.AD.5.noLongINDELS.vcf.gz 6341561 VCF d2326ede46b91a07198d9f261c0222f7 C3L-01160.WXS.N.hg38 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 +C3L-01182 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01182.filtered.AD.5.noLongIndels.vcf.gz 3232058 VCF 21d284dbd9d5fac74b2a40636042b45b C3L-01182.WXS.Nbc.hg38 22ab3498-8a5a-40a2-ae0d-5a1c43a40b3e +C3L-01187 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01187.filtered.AD.5.noLongIndels.vcf.gz 3853821 VCF 3eaa415f80c0c37d2ae38151d3288dfd C3L-01187.WXS.Nbc.hg38 ec6f0fdb-2025-4824-8be4-aea9c55ebb72 +C3L-01188 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01188.filtered.AD.5.noLongIndels.vcf.gz 3623801 VCF 0ff398dc815cc59eaa9a92d9618c64de C3L-01188.WXS.Nbc.hg38 ff371b49-e65e-4800-bbe1-788160cc302d +C3L-01201 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01201.filtered.AD.5.noLongIndels.vcf.gz 3605174 VCF 8118968d4c3df04020ff383f317106a8 C3L-01201.WXS.Nbc.hg38 606c41b0-38ac-411d-81a7-5cb0ab967a8e C3L-01202 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-01202.filtered.AD.5.noLongIndels.vcf.gz 3823839 VCF 8177aa2ddbc6627c76e1d874beff5a61 C3L-01202.WXS.Nbc.hg38 27a3e95a-5366-4bd7-949d-a684996b8f00 C3L-01205 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-01205.filtered.AD.5.noLongIndels.vcf.gz 3753911 VCF 0de4d8ebbd335633c3b95fcc768c7521 C3L-01205.WXS.Nbc.hg38 671e95de-5f1a-4e05-8d45-2a0a3c129ea4 C3L-01210 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-01210.filtered.AD.5.noLongIndels.vcf.gz 3837983 VCF 92ca3296cf5759a3d2f6da5a81a1c5e3 C3L-01210.WXS.Nbc.hg38 f122fdef-99c4-4d86-be9f-080233cf4113 @@ -441,6 +472,9 @@ C3L-01330 LUAD WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_ C3L-01352 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-01352.filtered.ROI.AD.5.INDELS.NS.vcf.gz 681965 VCF 9d4d3d6941fddede4e44dc4276cef93b C3L-01352.WXS.N.hg38 cb9822ae-c9a9-46ee-aef6-30addbcc01fa C3L-01352 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-01352.filtered.AD.5.noLongINDELS.vcf.gz 7474574 VCF d431ec5f71dfdb333ddcfacf7093501d C3L-01352.WXS.N.hg38 cb9822ae-c9a9-46ee-aef6-30addbcc01fa C3L-01355 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-01355.filtered.AD.5.noLongINDELS.vcf.gz 7209479 VCF f5d55feff32c11c8a864df3ef3eb52a1 C3L-01355.WXS.N.hg38 ac192f91-2c4f-4a62-a243-1a6c2e120380 +C3L-01425 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01425.filtered.AD.5.noLongIndels.vcf.gz 4261408 VCF 9d6c50895ea11d54c93e93d5f18bc60e C3L-01425.WXS.Nbc.hg38 0beb5388-ac5c-42d6-afc4-478ba0a192d0 +C3L-01426 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01426.filtered.AD.5.noLongIndels.vcf.gz 3334826 VCF 836741d88b6faff7e3d75191c784cccb C3L-01426.WXS.Nbc.hg38 fd8ed386-d649-451f-bc9d-c3f7122c67d4 +C3L-01427 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01427.filtered.AD.5.noLongIndels.vcf.gz 3972065 VCF 493691ff1fe6e2e52a19450f0988afe5 C3L-01427.WXS.Nbc.hg38 c9de71de-5b62-4097-b051-80bc9e639eec C3L-01453 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-01453.filtered.ROI.AD.5.INDELS.NS.vcf.gz 710295 VCF 18d5673fb01ebf0a4540e260775924fc C3L-01453.WXS.N.hg38 587a23b3-2719-4158-9561-88037fd381a2 C3L-01453 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-01453.filtered.AD.5.noLongINDELS.vcf.gz 8240557 VCF b411b3e4b67c05cb9382333695b67da4 C3L-01453.WXS.N.hg38 587a23b3-2719-4158-9561-88037fd381a2 C3L-01455 LSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-01455.filtered.ROI.AD.5.INDELS.NS.vcf.gz 20 VCF 140ee58a0f0623b5375fd56d2ed73f54 C3L-01455.WXS.N.hg38 7c9485dc-7433-471e-8298-d48100d5c895 @@ -500,6 +534,7 @@ C3L-01687 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_ C3L-01687 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-01687.filtered.AD.5.noLongINDELS.vcf.gz 7437052 VCF f5439179241dd123df024b6a588134b5 C3L-01687.WXS.N.hg38 94700395-e6b7-424a-aefd-5004e6dd355d C3L-01689 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-01689.filtered.ROI.AD.5.INDELS.NS.vcf.gz 701950 VCF c4aefc2aba75a5db1e7ce765f00ee336 C3L-01689.WXS.N.hg38 642cddf7-2f67-4d03-9635-06c554458f3c C3L-01689 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-01689.filtered.AD.5.noLongINDELS.vcf.gz 9093587 VCF e158301d4071df293bae79d001fb4f25 C3L-01689.WXS.N.hg38 642cddf7-2f67-4d03-9635-06c554458f3c +C3L-01694 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-01694.filtered.AD.5.noLongIndels.vcf.gz 3810682 VCF faace6ca894fd17cae42ea61f294a64b C3L-01694.WXS.Nbc.hg38 07fdceb1-5120-4aa7-b3ff-6f3e17d6fa7f C3L-01696 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-01696.filtered.AD.5.noLongIndels.vcf.gz 4101531 VCF 75f2e021a41222acc8a17ea5e9a7cdb0 C3L-01696.WXS.Nbc.hg38 291df1e9-343e-40f1-8819-22284ab7b9ab C3L-01700 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-01700.filtered.AD.5.noLongIndels.vcf.gz 4366002 VCF 8164e3e9c84a48f032ef37b6d7976f03 C3L-01700.WXS.Nbc.hg38 676720f7-87ab-4d27-b690-8f1cb45a3553 C3L-01702 PDA WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3L-01702.filtered.AD.5.noLongINDELS.vcf.gz 7796958 VCF 1eac5ab65dec81f8b61364fa29cef38e C3L-01702.WXS.N.hg38 60696094-cd7b-40cf-9e6d-d51915c7a511 @@ -752,6 +787,7 @@ C3L-02741 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_W C3L-02744 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-02744.filtered.AD.5.noLongINDELS.vcf.gz 6726483 VCF 5e649beb3454130a34153e26f49e9a02 C3L-02744.WXS.N.hg38 3917d081-1f26-4efa-aeca-c84aad552931 C3L-02746 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-02746.filtered.AD.5.noLongINDELS.vcf.gz 7611871 VCF 3afd00179323504c33ecbb0970222c47 C3L-02746.WXS.N.hg38 9b546bc5-8a2b-468d-a871-b7ba28c7f33e C3L-02747 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-02747.filtered.AD.5.noLongINDELS.vcf.gz 6945027 VCF 0b7a2321f0c663514a58004689789f33 C3L-02747.WXS.N.hg38 a45c7228-e30a-47b0-a158-a95993f62abd +C3L-02779 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-02779.filtered.AD.5.noLongIndels.vcf.gz 3699898 VCF 37ba40757bbe35ca7ded5a25cc0899c7 C3L-02779.WXS.Nbc.hg38 adf548df-165a-4d62-8dbc-e520d78a169d C3L-02800 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-02800.filtered.AD.5.noLongINDELS.vcf.gz 6700377 VCF d3536e1c63d7ab6eb443f26215cfa561 C3L-02800.WXS.N.hg38 d811b0c8-e883-4156-99fd-3a06f8794068 C3L-02802 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-02802.filtered.AD.5.noLongINDELS.vcf.gz 6959389 VCF e6c891e6b303263b91f74061212b2e0f C3L-02802.WXS.N.hg38 9e7b3f3a-ca82-4ff9-a0c3-c77268d3e0bd C3L-02809 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-02809.filtered.ROI.AD.5.INDELS.NS.vcf.gz 693011 VCF 32bf524e7d7ac3629b82e5dc9607165b C3L-02809.WXS.N.hg38 943a11ee-ac73-4d2b-a82f-900e3899f5dc @@ -821,6 +857,7 @@ C3L-03271 LUAD WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_ C3L-03272 LSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-03272.filtered.ROI.AD.5.INDELS.NS.vcf.gz 20 VCF 576800e9231cc9fd9d1346e3fa80ca54 C3L-03272.WXS.N.hg38 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 C3L-03272 LSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-03272.filtered.ROI.AD.5.INDELS.NS.vcf.gz 428296 VCF 8cc6f5cb4cdaa8c9eda786e83ae8bb96 C3L-03272.WXS.N.hg38 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 C3L-03272 LSCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-03272.filtered.AD.5.noLongINDELS.vcf.gz 4457863 VCF 3a677f88f92e7a36a8939dc4311312a5 C3L-03272.WXS.N.hg38 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 +C3L-03303 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-03303.filtered.AD.5.noLongIndels.vcf.gz 3741295 VCF 48dfc19d7a08d66ab91ddd73df474490 C3L-03303.WXS.Nbc.hg38 709ebea2-6679-4120-bbc8-0f5a280cdb95 C3L-03308 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-03308.filtered.AD.5.noLongIndels.vcf.gz 3713408 VCF c4e796214394bdacbe7334a1767a925d C3L-03308.WXS.Nbc.hg38 9ea0ec47-41c9-4b2e-badb-ccfd4979751a C3L-03350 PDA WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3L-03350.filtered.AD.5.noLongINDELS.vcf.gz 7010596 VCF 2bce659495cb5669b477ff9d8e1aa608 C3L-03350.WXS.N.hg38 38d08b68-04e5-4802-b62c-a26145674d96 C3L-03356 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-03356.filtered.ROI.AD.5.INDELS.NS.vcf.gz 677564 VCF 89fb0a0698bd31bd554a3278d1ae8f9e C3L-03356.WXS.N.hg38 bf6fe2a5-f454-42ea-93d0-d11496684867 @@ -856,6 +893,8 @@ C3L-03491 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_ C3L-03493 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-03493.filtered.AD.5.noLongIndels.vcf.gz 4113216 VCF 9b076d2623cdb73d6fecac9ca35df656 C3L-03493.WXS.Nbc.hg38 2b57bf62-bfa7-4f9f-a2f5-985fd8b85e32 C3L-03496 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-03496.filtered.AD.5.noLongIndels.vcf.gz 4360537 VCF 4ab4c17b511069c3be45798762170b43 C3L-03496.WXS.Nbc.hg38 278c38d9-9ca8-4c92-80cc-936a7d8f85d0 C3L-03497 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-03497.filtered.AD.5.noLongIndels.vcf.gz 4084657 VCF f1e079c1f1f7977df71e17ef4f4eb565 C3L-03497.WXS.Nbc.hg38 348a2f38-a72f-45bf-8a42-1e6ee6119a96 +C3L-03506 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-03506.filtered.AD.5.noLongIndels.vcf.gz 3718961 VCF bb459ebc397a8aa294a69b873907a6e4 C3L-03506.WXS.Nbc.hg38 0ccedbbe-7557-439d-b112-1298da45dabf +C3L-03508 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-03508.filtered.AD.5.noLongIndels.vcf.gz 3967147 VCF 7f960bbbcc5674e620661e8478811ad3 C3L-03508.WXS.Nbc.hg38 4749abe5-0c59-4005-9b4b-56aab04fd2d2 C3L-03589 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-03589.filtered.AD.5.noLongINDELS.vcf.gz 6856620 VCF c4419fb35fa47b4f0768025c5ca5bcfb C3L-03589.WXS.N.hg38 39e343ca-ccae-406e-b79e-46c1b13d585c C3L-03624 PDA WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3L-03624.filtered.AD.5.noLongINDELS.vcf.gz 6902141 VCF 9c753afa8ac791ac78f232d4c0c1a759 C3L-03624.WXS.N.hg38 dbbaffe7-de40-4707-ac67-682934f2c5ca C3L-03628 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-03628.filtered.ROI.AD.5.INDELS.NS.vcf.gz 701697 VCF 7ef6b6d06c78991b1f2131db1aa5f20c C3L-03628.WXS.N.hg38 dd82c39e-22e0-46eb-a844-2fe349b189ca @@ -936,6 +975,7 @@ C3L-04072 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS C3L-04079 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04079.filtered.AD.5.noLongINDELS.vcf.gz 6356298 VCF 9871444f5bcd9795c92323ed8042c31b C3L-04079.WXS.N.hg38 74809893-4a2d-41fd-8c1a-b6059707b845 C3L-04080 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-04080.filtered.ROI.AD.5.INDELS.NS.vcf.gz 687414 VCF 3bb60dd7693380ca5f207769b3fe7a0e C3L-04080.WXS.N.hg38 fc949e80-7df5-4e0f-9f54-de1f5e5fe540 C3L-04080 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-04080.filtered.AD.5.noLongINDELS.vcf.gz 6481139 VCF 09339c969ed95223b44566979d5d7df9 C3L-04080.WXS.N.hg38 fc949e80-7df5-4e0f-9f54-de1f5e5fe540 +C3L-04081 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04081.filtered.AD.5.noLongIndels.vcf.gz 4035908 VCF 28b8fff9d954da9866f12b098c558799 C3L-04081.WXS.N.hg38 06d346ea-40cc-43fc-ab1e-a6e54c666c36 C3L-04082 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04082.filtered.AD.5.noLongINDELS.vcf.gz 8045982 VCF 373c79271bece3701e9e8ef07ca25cdf C3L-04082.WXS.N.hg38 5d9f84bd-a6e9-4678-99b9-b92e116bd990 C3L-04083 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04083.filtered.AD.5.noLongINDELS.vcf.gz 5620036 VCF f4c7a342e038fb042f9304d92b06c868 C3L-04083.WXS.N.hg38 cc4f43a8-3da1-4df6-94d3-48d461e679a2 C3L-04084 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-04084.filtered.ROI.AD.5.INDELS.NS.vcf.gz 692664 VCF 12fc5712fe0c8a11423daa9d952c3a89 C3L-04084.WXS.N.hg38 34b6e37f-77df-4184-a9fe-f4b498986b51 @@ -944,12 +984,17 @@ C3L-04085 GBM WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_ C3L-04090 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04090.filtered.AD.5.noLongINDELS.vcf.gz 6595611 VCF 6862aa40e29e6a3a28bfd66a6a613c3d C3L-04090.WXS.N.hg38 cb068c31-d894-43ba-b308-3b1f97d8c15e C3L-04213 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04213.filtered.AD.5.noLongINDELS.vcf.gz 6274390 VCF 425f7c3601f36eff80f10bef8aa62e74 C3L-04213.WXS.N.hg38 3cc11d4a-5a91-438c-9143-57a046ea5a10 C3L-04216 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04216.filtered.AD.5.noLongINDELS.vcf.gz 5861001 VCF 1e007723cee3c42ec75d78adeedc7ea1 C3L-04216.WXS.N.hg38 0021b0fd-e27f-4263-a44f-0af1347d4e39 +C3L-04231 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04231.filtered.AD.5.noLongIndels.vcf.gz 3924034 VCF b4139565f3a64db1465da15ccd647f7a C3L-04231.WXS.Nbc.hg38 16ae477a-e93e-467b-bcdc-4b3667ea8056 +C3L-04236 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04236.filtered.AD.5.noLongIndels.vcf.gz 3695719 VCF 3f36522880d05049d2d3127156978ef0 C3L-04236.WXS.Nbc.hg38 da0e8d5a-812d-47f6-88c6-4dbf8db367a3 C3L-04241 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04241.filtered.AD.5.noLongIndels.vcf.gz 4459079 VCF 7a94666f016ea6177e3775b9c8014a5c C3L-04241.WXS.Nbc.hg38 15389de3-14df-4a8a-ae92-d7fa0edf5a1d C3L-04242 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04242.filtered.AD.5.noLongIndels.vcf.gz 4262977 VCF d65dc32f3b107d5e3c1386d54369e16d C3L-04242.WXS.Nbc.hg38 e9215e98-3c2f-4f4c-ac38-06ac91e1a611 C3L-04244 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04244.filtered.AD.5.noLongIndels.vcf.gz 4238610 VCF 214b760a1d0d97f391d0a89f3dab887f C3L-04244.WXS.Nbc.hg38 c72cec50-cbdf-466a-95fb-1dd6de93f6d4 C3L-04245 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04245.filtered.AD.5.noLongIndels.vcf.gz 4037722 VCF e6836588382b138c109488f9ba26acb6 C3L-04245.WXS.Nbc.hg38 f8eb0ba7-5fe1-4f29-9611-b92247e40c4d C3L-04250 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04250.filtered.AD.5.noLongIndels.vcf.gz 4045881 VCF f07e3ed475af8068736eddfb01d66859 C3L-04250.WXS.Nbc.hg38 4fd2af8b-5f99-4023-b9d8-4f33a604ecc1 +C3L-04263 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04263.filtered.AD.5.noLongIndels.vcf.gz 3654324 VCF 89015a9bf1a8a6ba0efb771dfae405d8 C3L-04263.WXS.Nbc.hg38 812bb6f6-a281-4876-b300-5353cea468aa C3L-04265 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04265.filtered.AD.5.noLongIndels.vcf.gz 4978251 VCF c9fe820a8b2122f421b0b4b513d73058 C3L-04265.WXS.Nbc.hg38 6d54295f-abfd-4903-b7da-a345847aba8c +C3L-04269 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04269.filtered.AD.5.noLongIndels.vcf.gz 3788447 VCF ec87ce1f6023825584c160341e487a94 C3L-04269.WXS.Nbc.hg38 211bca65-45bb-4347-8146-b83f2c4e2222 +C3L-04270 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04270.filtered.AD.5.noLongIndels.vcf.gz 3792840 VCF 8017f1bb66f02c945a2cb96c87303ee1 C3L-04270.WXS.Nbc.hg38 b6bbc306-2ab1-45d3-9d04-6aca54c65c17 C3L-04336 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04336.filtered.AD.5.noLongINDELS.vcf.gz 6695684 VCF 8fec4187501894193186b4995ec478a1 C3L-04336.WXS.N.hg38 1a24671b-f4be-4246-a1f1-019bd0be9375 C3L-04339 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04339.filtered.AD.5.noLongINDELS.vcf.gz 6068489 VCF 576fcefd7bbc2f29bc8fb7a9b89d5a41 C3L-04339.WXS.N.hg38 210f66ea-881d-49ae-b32c-3d39ddac7941 C3L-04354 HNSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-04354.filtered.ROI.AD.5.INDELS.NS.vcf.gz 678959 VCF 2b4f7be65781051208fe47e9cbec69c7 C3L-04354.WXS.N.hg38 1a7fe815-6001-4550-b337-5883804884d4 @@ -976,6 +1021,8 @@ C3L-04475 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_ C3L-04475 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-04475.filtered.AD.5.noLongINDELS.vcf.gz 7421051 VCF 486341ef1172d765e3b048bb3dad90ac C3L-04475.WXS.N.hg38 1e4f182e-d572-4fa9-82e8-4427d5d3b0e0 C3L-04479 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-04479.filtered.ROI.AD.5.INDELS.NS.vcf.gz 689626 VCF bdd58884ea778cdd857e21301695399e C3L-04479.WXS.N.hg38 cc12df9a-deba-436f-87a4-b924e725c1ee C3L-04479 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-04479.filtered.AD.5.noLongINDELS.vcf.gz 7339841 VCF 6c4657ca2b1373a4e618a4e440393bee C3L-04479.WXS.N.hg38 cc12df9a-deba-436f-87a4-b924e725c1ee +C3L-04483 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04483.filtered.AD.5.noLongIndels.vcf.gz 3854281 VCF 800d20f6087333a79cd2a9e6a9fa5c6c C3L-04483.WXS.Nbc.hg38 a2b2218d-0336-4ba8-868c-8cbb6d8ecec1 +C3L-04489 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04489.filtered.AD.5.noLongIndels.vcf.gz 3573203 VCF 986ed7a1f2f792a3180ba0ba7ef2acc0 C3L-04489.WXS.Nbc.hg38 59561b27-a5e3-420d-9f98-63d191c4e74c C3L-04495 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3L-04495.filtered.ROI.AD.5.INDELS.NS.vcf.gz 712917 VCF 5ef2b14026cc807917e63782a79613e3 C3L-04495.WXS.N.hg38 19d20b8d-942f-4e2d-8084-e9e4d00175f8 C3L-04495 PDA WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3L-04495.filtered.AD.5.noLongINDELS.vcf.gz 7473101 VCF d06631903c441bc2031f30907403c109 C3L-04495.WXS.N.hg38 19d20b8d-942f-4e2d-8084-e9e4d00175f8 C3L-04505 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04505.filtered.AD.5.noLongIndels.vcf.gz 3848877 VCF 1461060e34609de55ba1e48b422c4dd5 C3L-04505.WXS.Nbc.hg38 43f12e45-3829-4c28-bb38-135b74b32a68 @@ -988,6 +1035,8 @@ C3L-04746 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_W C3L-04749 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04749.filtered.AD.5.noLongINDELS.vcf.gz 6823674 VCF 4d821863b055568d0c2d1b4e09ebee95 C3L-04749.WXS.N.hg38 5a04c54a-46c6-4b22-9f57-e957bab13f58 C3L-04757 LUAD WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04757.filtered.AD.5.noLongINDELS.vcf.gz 7413769 VCF fb315db1e78b14e06578a53d392a32aa C3L-04757.WXS.N.hg38 73164e58-3cba-4a7a-a6ab-a37395c5ebe4 C3L-04759 LUAD WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3L-04759.filtered.AD.5.noLongINDELS.vcf.gz 5905476 VCF b3892d2b60e4f89652282661a137fedf C3L-04759.WXS.N.hg38 857d5e77-fb80-45a8-86d5-b2e15ae3f8ea +C3L-04761 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04761.filtered.AD.5.noLongIndels.vcf.gz 3208250 VCF 47b3b68f157f37b9c5caf03f6303a099 C3L-04761.WXS.Nbc.hg38 a5e9a55d-077a-474e-9e46-634e8a9e1090 +C3L-04763 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04763.filtered.AD.5.noLongIndels.vcf.gz 3862069 VCF e9b2e8b0f52f2a408614ce9057b1720b C3L-04763.WXS.Nbc.hg38 ba2e573c-d870-40df-9413-ab7dd13caa74 C3L-04764 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04764.filtered.AD.5.noLongIndels.vcf.gz 4142945 VCF 5a6c6aae1d17bc79cd579a5847f4cdd6 C3L-04764.WXS.Nbc.hg38 76c541bd-e0d0-4820-b4c8-f74fc46dd369 C3L-04766 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04766.filtered.AD.5.noLongIndels.vcf.gz 4248670 VCF feffe40c4c7869feedda42c1c07f6a94 C3L-04766.WXS.Nbc.hg38 c126f3de-a3ce-4001-951e-2474f086a1b6 C3L-04767 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-04767.filtered.AD.5.noLongIndels.vcf.gz 3654162 VCF 9b0ab22fa8f15daff834fcc777254cf8 C3L-04767.WXS.Nbc.hg38 2380ca7e-3224-488c-b0e0-baebea395923 @@ -1026,6 +1075,8 @@ C3L-04912 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_W C3L-04916 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04916.filtered.AD.5.noLongINDELS.vcf.gz 6477324 VCF 518a74d11a1165770c42e2cd5e544bb7 C3L-04916.WXS.N.hg38 c3b89dbf-4970-49de-830f-8fd51091bdee C3L-04921 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04921.filtered.AD.5.noLongINDELS.vcf.gz 6093799 VCF 615fe0bbbad43ff5089532858fba5b02 C3L-04921.WXS.N.hg38 7f6409db-1a09-4284-9354-e412f210c7e7 C3L-04922 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-04922.filtered.AD.5.noLongINDELS.vcf.gz 6167371 VCF 5c3bb6e9df49ae4a83a4f5d724d9cf5e C3L-04922.WXS.N.hg38 72c93155-cbfc-4453-9c3f-05b04b32935d +C3L-04971 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04971.filtered.AD.5.noLongIndels.vcf.gz 4109578 VCF 410a8ddfa8f6ee32964488353f6248c9 C3L-04971.WXS.Nbc.hg38 8af4c3fd-04fd-4e76-bfee-67bb4a62d215 +C3L-04976 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-04976.filtered.AD.5.noLongIndels.vcf.gz 3457567 VCF 23af835789541337e1748c4704fd85e7 C3L-04976.WXS.Nbc.hg38 c7f73644-7904-417e-a93c-ce6d8158663c C3L-05020 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05020.filtered.AD.5.noLongINDELS.vcf.gz 6178793 VCF ebd37285304baf422e5c89811b07f261 C3L-05020.WXS.N.hg38 fb746083-979c-4c23-8273-892698ca18f6 C3L-05022 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05022.filtered.AD.5.noLongINDELS.vcf.gz 7056346 VCF 620d87a198d6ab11d92aaa636cdc8d39 C3L-05022.WXS.N.hg38 5375bbe6-ca93-44ce-b9b3-581538a8bdc8 C3L-05145 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05145.filtered.AD.5.noLongINDELS.vcf.gz 6561320 VCF 8814673022a613cca84b1d4d633d4540 C3L-05145.WXS.N.hg38 c10e82d4-555c-4c14-8b58-1b9110e155a6 @@ -1037,8 +1088,21 @@ C3L-05212 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_W C3L-05221 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05221.filtered.AD.5.noLongINDELS.vcf.gz 7281740 VCF d410087c09b8f418b8fd319b9344dfc8 C3L-05221.WXS.N.hg38 cac12ff1-9cf3-4ac9-a7dd-2adb8cd0a538 C3L-05225 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05225.filtered.AD.5.noLongINDELS.vcf.gz 6017940 VCF 003580b7d639588d482e053330e42363 C3L-05225.WXS.N.hg38 19f20d7b-086d-4040-9f9c-dd17e2fe5017 C3L-05239 GBM WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05239.filtered.AD.5.noLongINDELS.vcf.gz 5517236 VCF 47cda32a130ee464b06444dc82ac3582 C3L-05239.WXS.N.hg38 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb +C3L-05313 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05313.filtered.AD.5.noLongIndels.vcf.gz 4020293 VCF b3675dbd21abb76e2eff33766ea0a135 C3L-05313.WXS.Nbc.hg38 ae1d8fd4-9a96-4d17-a889-ded2269865bf +C3L-05315 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05315.filtered.AD.5.noLongIndels.vcf.gz 3342426 VCF 1ebdcc1c2138ca80e18df3767b13a73a C3L-05315.WXS.Nbc.hg38 a6f0dd60-9ac1-43b3-b30e-7b75c626e851 +C3L-05316 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05316.filtered.AD.5.noLongIndels.vcf.gz 4230270 VCF 10547e4678b710d3a5a113032e6d0dc6 C3L-05316.WXS.Nbc.hg38 955c07ff-fa9a-4d95-b6f6-325d943e8ffb +C3L-05317 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05317.filtered.AD.5.noLongIndels.vcf.gz 3486165 VCF a3396e780ad4ac171c62bfb73e0e43c0 C3L-05317.WXS.Nbc.hg38 a46cc866-2de4-46d9-b8dd-88e6b91c83f5 +C3L-05318 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05318.filtered.AD.5.noLongIndels.vcf.gz 3778397 VCF 69cf9eeec9fe2cd8511d81f0078ae15e C3L-05318.WXS.Nbc.hg38 d6e2c490-ffcc-464c-ad86-a7d4f73cb390 +C3L-05320 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05320.filtered.AD.5.noLongIndels.vcf.gz 3718378 VCF 6d653e4bfd3ea77fbea01ed7d49ae871 C3L-05320.WXS.Nbc.hg38 55f9d769-c711-4f7b-a3b6-33b16ff5734c +C3L-05325 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05325.filtered.AD.5.noLongIndels.vcf.gz 3981993 VCF bcbbbca030a0933649058c49d2647921 C3L-05325.WXS.Nbc.hg38 508a3aa9-018b-4db7-9750-68ad57767d7b +C3L-05326 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05326.filtered.AD.5.noLongIndels.vcf.gz 4042584 VCF 5a9fce2d7cc8372cb481901593906348 C3L-05326.WXS.Nbc.hg38 ec091100-2100-4d29-a873-296e36d7db86 +C3L-05331 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05331.filtered.AD.5.noLongIndels.vcf.gz 3807071 VCF 863a4cd83188d79e3ef568b34a045a0e C3L-05331.WXS.Nbc.hg38 9bfc5703-1f12-4a0e-9ae7-17b7cf0ed5f9 +C3L-05334 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05334.filtered.AD.5.noLongIndels.vcf.gz 3962190 VCF 391858f1ca317bdb6a92c10925dcbb22 C3L-05334.WXS.Nbc.hg38 8cdf797c-dc5c-42d2-b159-92f0946be87a +C3L-05335 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05335.filtered.AD.5.noLongIndels.vcf.gz 3356726 VCF 35381a13be2492204066958ac8caf187 C3L-05335.WXS.Nbc.hg38 2b5cbbfe-66f9-45c1-9dea-02ae84d36b3a +C3L-05338 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05338.filtered.AD.5.noLongIndels.vcf.gz 3975285 VCF 627c53320cc1a526e8a98d446c52aea3 C3L-05338.WXS.Nbc.hg38 1f8df55f-a261-4316-bb19-972442496f86 C3L-05369 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05369.filtered.AD.5.noLongINDELS.vcf.gz 6025440 VCF c5d7628df36185a8f64e4246e2678291 C3L-05369.WXS.N.hg38 b8139e05-7f50-4251-bfe1-aeb22fa0d2df C3L-05386 AML WXS_Germline v1.1 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_CPTAC3-AML-germline_20220419/C3L-05386.filtered.AD.5.noLongIndels.vcf.gz 3512103 VCF 73156998892bbb203427977ae2ddd1d0 C3L-05386.WXS.Nbc.hg38 8236c897-0ac6-4158-b6b9-0335142cf267 +C3L-05387 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05387.filtered.AD.5.noLongIndels.vcf.gz 3463706 VCF e820f00318ae3b6a35dea5e2dc6ff190 C3L-05387.WXS.Nbc.hg38 244bf8e7-c556-45ac-89b8-7f2fb94e2ea6 C3L-05392 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05392.filtered.AD.5.noLongINDELS.vcf.gz 6617429 VCF a0015e73cfeb7fa4409b1f4c39f610bb C3L-05392.WXS.N.hg38 3c1747f9-b395-4f57-9c6d-3fd731fa0c78 C3L-05393 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05393.filtered.AD.5.noLongINDELS.vcf.gz 6400013 VCF e84dedfce99f8b906e25dfb8f6106211 C3L-05393.WXS.N.hg38 03b2b28f-19f2-4d74-87aa-1051a41b3128 C3L-05394 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05394.filtered.AD.5.noLongINDELS.vcf.gz 6722114 VCF 88cf56c071af8f16d8309915486c0e19 C3L-05394.WXS.N.hg38 92279fdc-602b-4ca8-8b1a-349ca7d1c358 @@ -1052,11 +1116,91 @@ C3L-05422 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_W C3L-05423 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05423.filtered.AD.5.noLongINDELS.vcf.gz 6130904 VCF 9aa92b27935be30bac02f98dfd8b5caf C3L-05423.WXS.N.hg38 d2d0dc18-4558-4422-820e-afdd32f6ce69 C3L-05427 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05427.filtered.AD.5.noLongINDELS.vcf.gz 5764675 VCF 24852e1b30e43db2ac936fc224d4a654 C3L-05427.WXS.N.hg38 ccf61fe8-7e9e-4b2f-b66c-525a448b239a C3L-05428 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05428.filtered.AD.5.noLongINDELS.vcf.gz 5560983 VCF 095d7bab2b154bafdfa4b297b1062e8c C3L-05428.WXS.N.hg38 e0e577de-1274-43bf-8429-4455a49bc8f0 +C3L-05481 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05481.filtered.AD.5.noLongIndels.vcf.gz 4364328 VCF 9f2c393020af1fce1ae664157c5b7ad2 C3L-05481.WXS.N.hg38 c951e25c-569b-4330-9f20-c9cf57eb8291 C3L-05571 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05571.filtered.AD.5.noLongINDELS.vcf.gz 7148444 VCF 496fc785c3a806e226cc74ccd2f8aa9f C3L-05571.WXS.N.hg38 fa70a90c-6154-4ebb-ab94-a38428f80e4c +C3L-05678 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05678.filtered.AD.5.noLongIndels.vcf.gz 3845702 VCF 65dc5feafaf278076efe2ccd67689df4 C3L-05678.WXS.Nbc.hg38 4a8cee33-0834-4a02-a43e-f3283b5334ec C3L-05693 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05693.filtered.AD.5.noLongINDELS.vcf.gz 6059665 VCF 52de439afb84d59aeee2192ce18b4ca3 C3L-05693.WXS.N.hg38 935ee27e-bb7f-4ba8-99b9-0fcfd5a0c65a +C3L-05811 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05811.filtered.AD.5.noLongIndels.vcf.gz 3585993 VCF 5137c9a5d5e785e8f8717595526de84e C3L-05811.WXS.Nbc.hg38 46925dff-cc17-4171-abf7-d449977beb8f +C3L-05815 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05815.filtered.AD.5.noLongIndels.vcf.gz 4001902 VCF 2f5fcf795908b8df406ab5d705686d50 C3L-05815.WXS.Nbc.hg38 b71ca46d-887c-4f93-8d39-d29a490b62fa +C3L-05816 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05816.filtered.AD.5.noLongIndels.vcf.gz 3615122 VCF 751061a427f6b2dcd24f7c5ede6898e0 C3L-05816.WXS.Nbc.hg38 d96c9dee-d6ca-4abe-b1f5-df582acb9a32 +C3L-05818 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05818.filtered.AD.5.noLongIndels.vcf.gz 3792111 VCF ba5d7e7f3881ae941b30f49613eb2a04 C3L-05818.WXS.Nbc.hg38 5730c453-4048-4c9e-b10a-06c63400babf +C3L-05819 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05819.filtered.AD.5.noLongIndels.vcf.gz 3459862 VCF a3e384d92ec987ef8192637f1c8c2de2 C3L-05819.WXS.Nbc.hg38 08a8f112-a896-4435-bec0-4f7c3081d5c3 C3L-05848 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05848.filtered.AD.5.noLongINDELS.vcf.gz 6686389 VCF 01ca348f527248cfd3273b83c607f21f C3L-05848.WXS.N.hg38 78c6363c-4e2d-4136-ab9f-0b22d51bd0b8 C3L-05849 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-05849.filtered.AD.5.noLongINDELS.vcf.gz 7373034 VCF 2a5d062ffc7fe289546ef20e068514b6 C3L-05849.WXS.N.hg38 51522438-df89-4bfe-ba34-8a260e48d23d +C3L-05861 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05861.filtered.AD.5.noLongIndels.vcf.gz 3967903 VCF 85698e08618512e3e7ec269429faad1a C3L-05861.WXS.Nbc.hg38 c72348e7-a76b-4ff7-83b6-878245aea7a2 +C3L-05862 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05862.filtered.AD.5.noLongIndels.vcf.gz 3879050 VCF 9793dbfeaa80f8d3c712cffd166c199e C3L-05862.WXS.Nbc.hg38 59e58410-19e6-4330-b6c9-ebc6df712950 +C3L-05865 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05865.filtered.AD.5.noLongIndels.vcf.gz 3912719 VCF 888ada2ded37bf9f5ec9587430f71cd9 C3L-05865.WXS.Nbc.hg38 31fed2ee-eb65-40c7-b0ec-29b6473228db +C3L-05866 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05866.filtered.AD.5.noLongIndels.vcf.gz 4354098 VCF 38a6defcadc5655967bfc886a2cf766e C3L-05866.WXS.Nbc.hg38 a70ea14c-6e6b-46c1-b114-9c5ff9435f9d +C3L-05867 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05867.filtered.AD.5.noLongIndels.vcf.gz 4342369 VCF 1c304b90bae5aab9f4448e137e974b1e C3L-05867.WXS.Nbc.hg38 e7f2cc73-9b6f-41b8-8e14-0c7e899a8792 +C3L-05870 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05870.filtered.AD.5.noLongIndels.vcf.gz 3978797 VCF 98fd2da8fe08aa0b7ee7b2f3ef6526d3 C3L-05870.WXS.Nbc.hg38 dde74b6b-38ea-4791-9571-2174d6ac026f +C3L-05872 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05872.filtered.AD.5.noLongIndels.vcf.gz 4165612 VCF ceb9ccd3a7b7fc59bdb5388a224f650d C3L-05872.WXS.Nbc.hg38 2fec3d76-e6cd-476c-aede-afaae7821287 +C3L-05874 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05874.filtered.AD.5.noLongIndels.vcf.gz 3883763 VCF 0454bc65c84d391215fe61ae134c73e0 C3L-05874.WXS.Nbc.hg38 7b352b43-0631-44ca-89b8-7501b3514e1b +C3L-05877 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05877.filtered.AD.5.noLongIndels.vcf.gz 3703282 VCF 2617b8a038723b1503fabd54078694fb C3L-05877.WXS.Nbc.hg38 ab66af5d-bf06-4441-ab13-d8941065731f +C3L-05880 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05880.filtered.AD.5.noLongIndels.vcf.gz 3905475 VCF 2069671f8a349ca5b7f3d1129772f28f C3L-05880.WXS.Nbc.hg38 7d7b0de8-3536-4785-af8d-c428b67982f7 +C3L-05884 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05884.filtered.AD.5.noLongIndels.vcf.gz 4404418 VCF 55e2a99a1468e044e4bf95ba4a49a59c C3L-05884.WXS.Nbc.hg38 16ae679b-5354-4ed5-abe4-a1b9d49a4ffc +C3L-05887 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05887.filtered.AD.5.noLongIndels.vcf.gz 3550641 VCF 908c302a26854bffda7c814b89f0513f C3L-05887.WXS.Nbc.hg38 b508e0fe-9f8a-4166-9bc8-70df9fac94df +C3L-05888 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05888.filtered.AD.5.noLongIndels.vcf.gz 3477336 VCF 64ba8c99bc2da4f38ed01097bc246ab5 C3L-05888.WXS.Nbc.hg38 e5726129-0842-47aa-a1c1-7b866092f086 +C3L-05889 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05889.filtered.AD.5.noLongIndels.vcf.gz 3886862 VCF e44e1b22c5e01f5e49d68ab2a9ddf0e6 C3L-05889.WXS.Nbc.hg38 a1688311-f146-494c-8e4e-49a7a3ded2e4 +C3L-05891 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05891.filtered.AD.5.noLongIndels.vcf.gz 4172141 VCF aaa04f0c627565ebe5e0290f0fbaecf6 C3L-05891.WXS.Nbc.hg38 08dfa21d-c21b-4a87-8285-94d4978a4cbc +C3L-05892 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05892.filtered.AD.5.noLongIndels.vcf.gz 4087022 VCF 1d1e42e426533aaf127ae0301393b98b C3L-05892.WXS.Nbc.hg38 1d5719fd-0d06-4185-9d13-ed1195d72fc4 +C3L-05894 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05894.filtered.AD.5.noLongIndels.vcf.gz 3757050 VCF 56fbfc92713cca183619fb63a00241bc C3L-05894.WXS.Nbc.hg38 e1a46f9f-2e3b-482c-a95e-6c04ff1de4b7 +C3L-05896 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05896.filtered.AD.5.noLongIndels.vcf.gz 3851720 VCF f3883a98a29153d2c9baa3ca20a80e24 C3L-05896.WXS.Nbc.hg38 5cb56b61-4615-4065-aedb-ac4019618f66 +C3L-05898 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05898.filtered.AD.5.noLongIndels.vcf.gz 3634961 VCF 02e7a5357d9a92969139fe8818978758 C3L-05898.WXS.Nbc.hg38 c207cee2-93ef-463d-aec6-ceaf6b131c3f +C3L-05905 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05905.filtered.AD.5.noLongIndels.vcf.gz 3408588 VCF 5178736434a986112cdb0fb1acf65fcf C3L-05905.WXS.Nbc.hg38 f32fb5f4-b57f-4fff-93bd-2ddcc99f3480 +C3L-05907 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05907.filtered.AD.5.noLongIndels.vcf.gz 3712145 VCF 42af1f3b7a3353a54258acca57c79c65 C3L-05907.WXS.Nbc.hg38 a144f235-3dd9-49e5-9645-78f7d893cc8c +C3L-05908 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-05908.filtered.AD.5.noLongIndels.vcf.gz 3556636 VCF 455fbcc86b40f2a146d26b158037350f C3L-05908.WXS.Nbc.hg38 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c +C3L-06061 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06061.filtered.AD.5.noLongIndels.vcf.gz 4171454 VCF 026062db0a4462ff418b185003337fb4 C3L-06061.WXS.Nbc.hg38 070f59df-e71c-4c18-b973-c155ce3a5387 +C3L-06063 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06063.filtered.AD.5.noLongIndels.vcf.gz 3921766 VCF d934cd66239a908be3a063f7bb51ec68 C3L-06063.WXS.Nbc.hg38 aa330441-41ff-469b-ace7-099764cd0d6a +C3L-06064 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06064.filtered.AD.5.noLongIndels.vcf.gz 3827044 VCF eb4e01e4c5e838115099e280e733c436 C3L-06064.WXS.Nbc.hg38 102d71ec-b7c0-4996-a48f-84e52499162d +C3L-06067 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06067.filtered.AD.5.noLongIndels.vcf.gz 3600343 VCF ec66b8b6c06897ba8a3b79c65b6ce873 C3L-06067.WXS.Nbc.hg38 57e18e83-d70b-4032-8ffd-f1406162100c +C3L-06069 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06069.filtered.AD.5.noLongIndels.vcf.gz 3313140 VCF 965aee353d87ca1254ca121b8e841c09 C3L-06069.WXS.Nbc.hg38 0bc45139-a05c-4cb0-bbf0-3218db271cdb +C3L-06070 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06070.filtered.AD.5.noLongIndels.vcf.gz 3677212 VCF 5997a2b7d4ff50a6f651fe3f301eb9ca C3L-06070.WXS.Nbc.hg38 b11b88a5-4c4a-437d-8d74-99bdc25e5cfa +C3L-06072 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06072.filtered.AD.5.noLongIndels.vcf.gz 3115649 VCF 086e6e6e4228b6f55128157506ed93e8 C3L-06072.WXS.Nbc.hg38 dedd32c0-3e63-45e0-ad49-7f74153a9cf4 +C3L-06074 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06074.filtered.AD.5.noLongIndels.vcf.gz 3354957 VCF 56102999ca28a92a5fa99002b05c139a C3L-06074.WXS.Nbc.hg38 1b1616ba-b1fd-4f17-9ce9-97fc0d0c1e0f +C3L-06075 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06075.filtered.AD.5.noLongIndels.vcf.gz 4383807 VCF 1fd9981b15c9bcb70355f11a25fa7ccb C3L-06075.WXS.Nbc.hg38 6ce214e7-d2a0-407a-9207-88a0bd2e49a6 +C3L-06081 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06081.filtered.AD.5.noLongIndels.vcf.gz 4553198 VCF 33f722a28ccd634969de4391f777f218 C3L-06081.WXS.Nbc.hg38 73f5f03d-516a-46ca-afad-3e1cc385cf4d +C3L-06082 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06082.filtered.AD.5.noLongIndels.vcf.gz 4012109 VCF 5cfab767404380f964580291bb1cda46 C3L-06082.WXS.Nbc.hg38 ed1760b8-da9b-4a5a-9433-9d010236f046 +C3L-06087 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06087.filtered.AD.5.noLongIndels.vcf.gz 3456843 VCF d1cafb39b2b408531774d63b632b0b72 C3L-06087.WXS.Nbc.hg38 45604952-1385-4e46-b462-998b6208de8a +C3L-06089 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06089.filtered.AD.5.noLongIndels.vcf.gz 3845183 VCF 26e9299087413f9be80f7ad60de2ff59 C3L-06089.WXS.Nbc.hg38 649cedd6-dca5-483a-a82b-5388be642838 +C3L-06090 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06090.filtered.AD.5.noLongIndels.vcf.gz 3538026 VCF 8d5e53591150c46fdf1afd5d87c9622a C3L-06090.WXS.Nbc.hg38 71ab0872-716e-451f-8bcb-46b1805592cf C3L-06169 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3L-06169.filtered.AD.5.noLongINDELS.vcf.gz 6648126 VCF ec58f345e8da9b79ec6af796dd327e7e C3L-06169.WXS.N.hg38 e4516e9f-55ec-4d26-95da-94432a652dd6 +C3L-06352 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06352.filtered.AD.5.noLongIndels.vcf.gz 4023337 VCF 53c91bf660464ee45dea077271629d7a C3L-06352.WXS.Nbc.hg38 f09dcaa8-87ac-4636-aec0-3b31d72597e9 +C3L-06356 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06356.filtered.AD.5.noLongIndels.vcf.gz 3843261 VCF 47d40d101eeaa0e639090eab23180317 C3L-06356.WXS.Nbc.hg38 87a3ee1c-badb-4f3b-af8e-6ad4f68b7be8 +C3L-06357 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06357.filtered.AD.5.noLongIndels.vcf.gz 3680170 VCF 8de14e07a59c304f63035bb7aca0f6ae C3L-06357.WXS.Nbc.hg38 27df62fa-1212-431d-8211-9981886b123d +C3L-06361 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06361.filtered.AD.5.noLongIndels.vcf.gz 3825969 VCF 4329f3555ef7b8a41251569dfcf12082 C3L-06361.WXS.Nbc.hg38 da2e2061-120f-44eb-90c4-e49d0abe0df4 +C3L-06364 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06364.filtered.AD.5.noLongIndels.vcf.gz 3377428 VCF 3631eb94e22044c0a14d84ef548e43e4 C3L-06364.WXS.Nbc.hg38 781cad08-5f3f-483a-b56a-0415097dd98e +C3L-06369 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06369.filtered.AD.5.noLongIndels.vcf.gz 7257635 VCF bf9e3099fd9c1472c41589d078d79977 C3L-06369.WXS.Nbc.hg38 cfec7a25-deba-47ba-baa1-a98913007129 +C3L-06374 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06374.filtered.AD.5.noLongIndels.vcf.gz 3541964 VCF c478ec698c8e4a71b85dcfbdc7b453c3 C3L-06374.WXS.Nbc.hg38 91de498d-bc4c-4448-a7ec-eda0c295ee08 +C3L-06386 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06386.filtered.AD.5.noLongIndels.vcf.gz 3980940 VCF e98447770c342bd4421deed71916b6c8 C3L-06386.WXS.Nbc.hg38 27966373-38a4-4697-8eda-28539d19e5c6 +C3L-06537 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06537.filtered.AD.5.noLongIndels.vcf.gz 3604113 VCF 60f7a36b73f3c57bc61771d36286632e C3L-06537.WXS.Nbc.hg38 0003d0ca-9bcb-4dab-ad58-eb99f626d24f +C3L-06538 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06538.filtered.AD.5.noLongIndels.vcf.gz 3883702 VCF 101811d2ba00d3f7d4aee5d6ac5ac4a3 C3L-06538.WXS.Nbc.hg38 bc427657-d229-491c-9683-14a1a522b955 +C3L-06539 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06539.filtered.AD.5.noLongIndels.vcf.gz 3813603 VCF f37bc181fab1244be32b20450153218b C3L-06539.WXS.Nbc.hg38 233aa0b4-a8bc-4fce-9747-82c617215b27 +C3L-06540 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06540.filtered.AD.5.noLongIndels.vcf.gz 3557438 VCF 974b5943e7d0369dada5bac085776608 C3L-06540.WXS.Nbc.hg38 7df2ff58-1123-4d05-99b0-93f8348bc66b +C3L-06541 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06541.filtered.AD.5.noLongIndels.vcf.gz 3307746 VCF bd63d7e13050d676f2fadf5da2e79f24 C3L-06541.WXS.Nbc.hg38 db057121-e94c-4c5c-8c74-c9a5aff26b13 +C3L-06542 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06542.filtered.AD.5.noLongIndels.vcf.gz 3754761 VCF d46b6cecd768c425b580478229e68873 C3L-06542.WXS.Nbc.hg38 f706c920-c9fa-47e7-b963-85d22687e70b +C3L-06625 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06625.filtered.AD.5.noLongIndels.vcf.gz 4375245 VCF 8acf645780bc31f58d1fff287cc92c4b C3L-06625.WXS.N.hg38 12c76c83-4c16-4016-8594-e04207caf5e5 +C3L-06801 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06801.filtered.AD.5.noLongIndels.vcf.gz 3763124 VCF 606ff42dc485dc549ad1dc3d64c1144a C3L-06801.WXS.Nbc.hg38 3f260eb2-a3a2-4167-864a-494392e107ef +C3L-06803 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06803.filtered.AD.5.noLongIndels.vcf.gz 3727352 VCF b75d62068d4efcb29dcec731bfe97c86 C3L-06803.WXS.Nbc.hg38 5f66e2ee-16bc-449e-af44-0d580e957a50 +C3L-06806 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06806.filtered.AD.5.noLongIndels.vcf.gz 3816515 VCF dc154bee6f48f66f639198b19e4667b0 C3L-06806.WXS.Nbc.hg38 bf4c8c61-9d59-4a3a-952f-bd5ede4dd1f0 +C3L-06807 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06807.filtered.AD.5.noLongIndels.vcf.gz 4006435 VCF 4c68c6d9b4e5439311fc030b78cc661c C3L-06807.WXS.Nbc.hg38 ef32ceab-0642-43ae-a9b2-3267328f1ff9 +C3L-06809 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06809.filtered.AD.5.noLongIndels.vcf.gz 3104942 VCF 83e7ed433987e39024b4e69fce084384 C3L-06809.WXS.Nbc.hg38 b95d946c-ecc7-4fdf-96d6-76d3ee43c96d +C3L-06951 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06951.filtered.AD.5.noLongIndels.vcf.gz 4237471 VCF e72d1efdd40bcbe1746c751408c70145 C3L-06951.WXS.Nbc.hg38 df688043-449a-4715-ada1-d3a72f034115 +C3L-06952 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06952.filtered.AD.5.noLongIndels.vcf.gz 3463276 VCF eb4118fb78a7d1ff18a097efe33c90d3 C3L-06952.WXS.Nbc.hg38 6675d018-2b90-40db-9ce3-4a5b08793284 +C3L-06953 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06953.filtered.AD.5.noLongIndels.vcf.gz 4004645 VCF d97e9a5c547107f8dee7f2e1a7fb81d7 C3L-06953.WXS.Nbc.hg38 ed6f6bd3-3d31-4dd8-8cb8-0bde987c9a1e +C3L-06954 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06954.filtered.AD.5.noLongIndels.vcf.gz 3896471 VCF 6e77175825376042a777e9ff1a5bdcfb C3L-06954.WXS.Nbc.hg38 82af1ee3-e913-4459-b382-234ff07db7c9 +C3L-06956 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06956.filtered.AD.5.noLongIndels.vcf.gz 3681915 VCF 12b26c2b708b77764c13ab910725ef64 C3L-06956.WXS.Nbc.hg38 f8d8ac5d-64bc-4103-8946-5a5d8a87d717 +C3L-06960 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06960.filtered.AD.5.noLongIndels.vcf.gz 3925110 VCF 347cab94091669ebe5838a6ee60b0ce8 C3L-06960.WXS.Nbc.hg38 08a63ff1-95e7-4eb4-9a5e-51bff51f2b51 +C3L-06981 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06981.filtered.AD.5.noLongIndels.vcf.gz 3974052 VCF 625da334e160eee358ffa68be2d28235 C3L-06981.WXS.Nbc.hg38 77f8c27e-925e-41f1-b90f-d9045b0e62ff +C3L-06982 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06982.filtered.AD.5.noLongIndels.vcf.gz 3691972 VCF 20bd45bfdff278680fa05417eddce1eb C3L-06982.WXS.Nbc.hg38 1b3e1f0d-f82b-40b7-a91f-cf1a46376849 +C3L-06983 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06983.filtered.AD.5.noLongIndels.vcf.gz 4115667 VCF 821e11ee1914e1f25b2380dec734b8da C3L-06983.WXS.Nbc.hg38 65286f62-a5d2-444d-b95f-d650dc8a2f38 +C3L-06984 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06984.filtered.AD.5.noLongIndels.vcf.gz 2964719 VCF dd8acb842d1b937df39a9f85d017521d C3L-06984.WXS.Nbc.hg38 7810bf2c-1091-45bc-b9e5-9814def4ef7f +C3L-07012 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07012.filtered.AD.5.noLongIndels.vcf.gz 3692911 VCF 6fac3185880a515fc475ed9227bd2161 C3L-07012.WXS.Nbc.hg38 64e2bdb1-f10f-420d-a03e-60e7d01af376 +C3L-07013 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07013.filtered.AD.5.noLongIndels.vcf.gz 4030016 VCF e3131abfb04b1ab5b740c64963a80741 C3L-07013.WXS.Nbc.hg38 6d83953f-9d59-45fd-9f1c-48d917f0efe9 +C3L-07202 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07202.filtered.AD.5.noLongIndels.vcf.gz 4157042 VCF 8bb6a6eb806c640d80f725acbf5f6354 C3L-07202.WXS.N.hg38 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed +C3L-07213 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07213.filtered.AD.5.noLongIndels.vcf.gz 4021546 VCF 5a6fe911cf63993a7b3001bfc5d6e035 C3L-07213.WXS.N.hg38 51e744f3-1253-44bf-9b98-c26271785d96 +C3L-07437 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07437.filtered.AD.5.noLongIndels.vcf.gz 3637569 VCF a7b41ac228a0fec70aa7ff3867a72884 C3L-07437.WXS.Nbc.hg38 2d79233e-307d-4835-b070-47feba860d01 +C3L-07439 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07439.filtered.AD.5.noLongIndels.vcf.gz 3606084 VCF e4ff0d1c5060ef3cda8efb3ac8c6dbad C3L-07439.WXS.Nbc.hg38 eed05d67-1bf7-436f-bfdb-b07dd6beb964 +C3L-07611 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07611.filtered.AD.5.noLongIndels.vcf.gz 4240695 VCF 44423d95740f385fc8f9414b15654ea0 C3L-07611.WXS.N.hg38 49d7c1cf-db69-41a6-9cbb-88f382ced875 C3N-00148 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00148.filtered.ROI.AD.5.INDELS.NS.vcf.gz 677727 VCF 08f2c606168d413c3f95125eb3de8879 C3N-00148.WXS.N.hg38 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c C3N-00148 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00148.filtered.AD.5.noLongINDELS.vcf.gz 7423746 VCF b32a4e33e8f3907d45431925085a987b C3N-00148.WXS.N.hg38 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c C3N-00149 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00149.filtered.ROI.AD.5.INDELS.NS.vcf.gz 664279 VCF 7b747971221f459a106655c99038caa6 C3N-00149.WXS.N.hg38 41500ac9-600c-48df-959c-c9b85224b648 @@ -1274,6 +1418,10 @@ C3N-00580 LUAD WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_ C3N-00646 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00646.filtered.ROI.AD.5.INDELS.NS.vcf.gz 687125 VCF 5aaabef6fb810bed882a3bbdb6fd1c72 C3N-00646.WXS.N.hg38 76ce08e4-2fd8-40e7-a591-2bfb0a3826d7 C3N-00646 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00646.filtered.AD.5.noLongINDELS.vcf.gz 6433083 VCF fe9d53e4ea5629a7128accfaa5159655 C3N-00646.WXS.N.hg38 76ce08e4-2fd8-40e7-a591-2bfb0a3826d7 C3N-00647 CCRCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_batch821_germline_20210917/C3N-00647.filtered.AD.5.noLongINDELS.vcf.gz 6222857 VCF f6d7b19891ba290efdef4c9917baa4d7 C3N-00647.WXS.N.hg38 a8a11eb2-00a7-4341-96c2-9789eb546534 +C3N-00651 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-00651.filtered.AD.5.noLongIndels.vcf.gz 3715109 VCF 668316b4923aec3a1aec89304d8f5f13 C3N-00651.WXS.Nbc.hg38 1a23b98c-d20b-4f53-b383-2649a57d6fd6 +C3N-00656 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-00656.filtered.AD.5.noLongIndels.vcf.gz 3876512 VCF 1732872515115b022c76194d116d6234 C3N-00656.WXS.Nbc.hg38 1233380f-2cb7-4050-a8e5-758c40fba5f1 +C3N-00659 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-00659.filtered.AD.5.noLongIndels.vcf.gz 3619303 VCF 67360bc5d4b739d3ddcb574a0299a214 C3N-00659.WXS.Nbc.hg38 9e7a838c-8033-4371-942f-572da8bb1aee +C3N-00660 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-00660.filtered.AD.5.noLongIndels.vcf.gz 4737790 VCF 9908098d598da5c6c67d06e963da4893 C3N-00660.WXS.Nbc.hg38 becfee83-3d85-4f28-9613-a0c26a6613d3 C3N-00661 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00661.filtered.ROI.AD.5.INDELS.NS.vcf.gz 702655 VCF 378192d340d6a41d68700cff41ea4ee1 C3N-00661.WXS.N.hg38 7a8cfc68-f8a4-4c6e-9acc-5f9f385f068b C3N-00661 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00661.filtered.AD.5.noLongINDELS.vcf.gz 8462756 VCF 9cf46b65107677c754fb5c8a1cfc9848 C3N-00661.WXS.N.hg38 7a8cfc68-f8a4-4c6e-9acc-5f9f385f068b C3N-00662 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00662.filtered.ROI.AD.5.INDELS.NS.vcf.gz 677803 VCF e61934d7c3d9bbcbafeb2b6be40737d2 C3N-00662.WXS.N.hg38 e0c40321-c1a9-4308-a056-2950db2d4923 @@ -1282,6 +1430,8 @@ C3N-00663 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_ C3N-00663 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00663.filtered.AD.5.noLongINDELS.vcf.gz 8396599 VCF 37a44e78aa94f21b593ec6852f0c36b3 C3N-00663.WXS.N.hg38 aeec4ab0-c3bf-4a88-af43-61cac87354c9 C3N-00665 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00665.filtered.ROI.AD.5.INDELS.NS.vcf.gz 693517 VCF 1b89956ae2a584931354c0e3fcba5820 C3N-00665.WXS.N.hg38 d7c0f0a4-302e-4d90-be01-3bd6592dd132 C3N-00665 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00665.filtered.AD.5.noLongINDELS.vcf.gz 7763708 VCF 0f56d4e93dbc6aafe345c90dbc318a6a C3N-00665.WXS.N.hg38 d7c0f0a4-302e-4d90-be01-3bd6592dd132 +C3N-00682 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-00682.filtered.AD.5.noLongIndels.vcf.gz 3916347 VCF 1348ec3bcfa0e55b536ee1642447457e C3N-00682.WXS.Nbc.hg38 ae1a9ec4-e7db-4467-bea4-d30d74abe706 +C3N-00689 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-00689.filtered.AD.5.noLongIndels.vcf.gz 4091212 VCF 8d29f47c58cff87846ba64640f419bd4 C3N-00689.WXS.Nbc.hg38 04ff8cce-e24b-4214-b284-4556cd134563 C3N-00704 LUAD WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00704.filtered.ROI.AD.5.INDELS.NS.vcf.gz 714941 VCF a1c8a846b7b0d0f28fe6f37a14a12184 C3N-00704.WXS.N.hg38 bec30983-31ae-4a8d-9c04-f784734a7778 C3N-00704 LUAD WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00704.filtered.AD.5.noLongINDELS.vcf.gz 8079950 VCF cd137f642d0589cfff3c94f281594132 C3N-00704.WXS.N.hg38 bec30983-31ae-4a8d-9c04-f784734a7778 C3N-00709 PDA WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00709.filtered.ROI.AD.5.INDELS.NS.vcf.gz 689980 VCF 9ff801fad849a5020503b1d4b66a0cd3 C3N-00709.WXS.N.hg38 f9e6a620-8f7b-4795-bcca-af44701a13a3 @@ -1427,6 +1577,7 @@ C3N-01179 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRC C3N-01179 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-01179.filtered.AD.5.noLongINDELS.vcf.gz 7232921 VCF 07f957efa606d1491c90def6138d2015 C3N-01179.WXS.N.hg38 9c91ae41-0a16-4cdf-8d33-dd72c519b7d1 C3N-01180 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-01180.filtered.ROI.AD.5.INDELS.NS.vcf.gz 673980 VCF 57ea9e0e19867cded481bb099ada65f6 C3N-01180.WXS.N.hg38 cbdc358a-4144-4c44-b7eb-745fc55db239 C3N-01180 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-01180.filtered.AD.5.noLongINDELS.vcf.gz 7121525 VCF fe964cd8614e622eac59723ad8133d02 C3N-01180.WXS.N.hg38 cbdc358a-4144-4c44-b7eb-745fc55db239 +C3N-01191 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-01191.filtered.AD.5.noLongIndels.vcf.gz 4832561 VCF 74833e7bafba511e02dd061d74963d10 C3N-01191.WXS.N.hg38 693176e7-e87c-49ef-9740-6f39f73e2633 C3N-01192 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-01192.filtered.ROI.AD.5.INDELS.NS.vcf.gz 710026 VCF 6abfa6a2590a3e0682f97e676e2c609d C3N-01192.WXS.N.hg38 69f9c1f6-3720-4de1-a3fa-23560dd44808 C3N-01192 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-01192.filtered.AD.5.noLongINDELS.vcf.gz 8837196 VCF 74c832c3dbd3f83b5ec83dec7e6c9196 C3N-01192.WXS.N.hg38 69f9c1f6-3720-4de1-a3fa-23560dd44808 C3N-01194 LSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-01194.filtered.ROI.AD.5.INDELS.NS.vcf.gz 20 VCF 576800e9231cc9fd9d1346e3fa80ca54 C3N-01194.WXS.N.hg38 46d74866-1e75-4cc7-b4ff-edeed248f414 @@ -1478,6 +1629,7 @@ C3N-01361 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCR C3N-01362 CCRCC WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3N-01362.filtered.AD.5.noLongINDELS.vcf.gz 6365303 VCF 292f0b6441461fcaee563fe3227e9a53 C3N-01362.WXS.N.hg38 4b6a513a-4723-4880-8cd4-3613840ad8b6 C3N-01364 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-01364.filtered.ROI.AD.5.INDELS.NS.vcf.gz 703834 VCF e559e6850d5077ca9eed0974acea8817 C3N-01364.WXS.N.hg38 c82073b0-cc01-4d02-a498-ec034e1b56d2 C3N-01364 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-01364.filtered.AD.5.noLongINDELS.vcf.gz 10127277 VCF 0ce2a69c38641f4743b82c78e45b9762 C3N-01364.WXS.N.hg38 c82073b0-cc01-4d02-a498-ec034e1b56d2 +C3N-01365 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-01365.filtered.AD.5.noLongIndels.vcf.gz 4279206 VCF 7cf4c858781ad15beec99dcbb9a9f7c2 C3N-01365.WXS.N.hg38 02d51bfb-91b3-414c-9ac7-7bb7adc737ab C3N-01366 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-01366.filtered.ROI.AD.5.INDELS.NS.vcf.gz 683052 VCF ced0b631fbee7dfb45c4a1e79e7e6462 C3N-01366.WXS.N.hg38 79890e10-5e89-4154-a9dc-af54dd220390 C3N-01366 GBM WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-01366.filtered.AD.5.noLongINDELS.vcf.gz 7040606 VCF 3e251ca97384ff3f02b7a6675b93b9e6 C3N-01366.WXS.N.hg38 79890e10-5e89-4154-a9dc-af54dd220390 C3N-01367 GBM WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-01367.filtered.ROI.AD.5.INDELS.NS.vcf.gz 725278 VCF ee10083c35d1c364a0b844e11151b085 C3N-01367.WXS.N.hg38 d1979603-e84c-47e7-b227-d9b43471d5c3 @@ -1904,6 +2056,7 @@ C3N-02678 UCEC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_W C3N-02681 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3N-02681.filtered.AD.5.noLongINDELS.vcf.gz 5646919 VCF b12196be1cf3d19618b783bfb367df00 C3N-02681.WXS.N.hg38 1dee4a31-a455-4094-9bca-8c5728420d08 C3N-02682 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3N-02682.filtered.AD.5.noLongINDELS.vcf.gz 6811978 VCF 1b76898e93a9744fb5877034941962b5 C3N-02682.WXS.N.hg38 8a53e18d-9895-42a2-9ec6-31f7bb5fcb77 C3N-02683 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3N-02683.filtered.AD.5.noLongINDELS.vcf.gz 5330410 VCF 2ccfd5b2b70af35993ff6fcd782fbd5e C3N-02683.WXS.N.hg38 d0263ae2-aa97-470b-9b51-bb94d28b6edc +C3N-02684 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-02684.filtered.AD.5.noLongIndels.vcf.gz 4178321 VCF 0c239db9e81814400d1ae44546f25ea6 C3N-02684.WXS.N.hg38 36ea9e25-fd16-43e8-a544-62be15bf70c5 C3N-02688 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3N-02688.filtered.AD.5.noLongINDELS.vcf.gz 5697470 VCF cd9ca507836b018a11bb00a114cc4482 C3N-02688.WXS.N.hg38 09900c8f-9803-4870-845f-3c3d4079d5c7 C3N-02693 HNSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-02693.filtered.ROI.AD.5.INDELS.NS.vcf.gz 698332 VCF 4ecfd5a10255061b0800eb9f5dd6fb18 C3N-02693.WXS.N.hg38 5e32bf3d-4e7d-495c-883a-8a503a185767 C3N-02693 HNSCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-02693.filtered.AD.5.noLongINDELS.vcf.gz 7449170 VCF 3603391a7b299b9af44b1b59af6f626c C3N-02693.WXS.N.hg38 5e32bf3d-4e7d-495c-883a-8a503a185767 @@ -2015,6 +2168,7 @@ C3N-03019 CCRCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRC C3N-03020 CCRCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_batch821_germline_20210917/C3N-03020.filtered.AD.5.noLongINDELS.vcf.gz 5726137 VCF c65b457d1c8b6c84e473432e80c0da4c C3N-03020.WXS.N.hg38 70297bb3-bb0c-4b9a-96f5-31806b7a1b58 C3N-03021 CCRCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_batch821_germline_20210917/C3N-03021.filtered.AD.5.noLongINDELS.vcf.gz 6165435 VCF e4e6193cf6d443c993fce6761a007347 C3N-03021.WXS.N.hg38 caa89110-0ea5-4d7e-883f-a9fdece28dbc C3N-03025 GBM WXS_Germline v1.1b 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_LUAD_GBM_Confirmatory_20210415/C3N-03025.filtered.AD.5.noLongINDELS.vcf.gz 6073555 VCF da0a40e5a25327e523f68b10e10ba865 C3N-03025.WXS.N.hg38 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 +C3N-03026 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3N-03026.filtered.AD.5.noLongIndels.vcf.gz 4427367 VCF 20f45412197446f4b4abffe273bcabd0 C3N-03026.WXS.N.hg38 21123e7d-d623-4cbe-b9dc-78011ba2735a C3N-03027 HNSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-03027.filtered.ROI.AD.5.INDELS.NS.vcf.gz 689255 VCF 44fd06858f4b155223ff4acb84e53581 C3N-03027.WXS.N.hg38 595ef8ef-53ca-42eb-9920-ffa1946341cd C3N-03027 HNSCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-03027.filtered.AD.5.noLongINDELS.vcf.gz 6209542 VCF 75a122825bd81f4ede0144acc0f4eb74 C3N-03027.WXS.N.hg38 595ef8ef-53ca-42eb-9920-ffa1946341cd C3N-03028 HNSCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-03028.filtered.ROI.AD.5.INDELS.NS.vcf.gz 665930 VCF 56620e7c913443c0f7276842349dbe9d C3N-03028.WXS.N.hg38 ef7578db-c8fe-41ce-be0c-25952fecf890 @@ -2314,3 +2468,11 @@ C3N-05915 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_W C3N-05923 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3N-05923.filtered.AD.5.noLongINDELS.vcf.gz 6041494 VCF e75cc2a54b8722c0632e910159d388cb C3N-05923.WXS.N.hg38 7d06c854-91cd-4691-81d7-c1b570e135ca C3N-05929 LSCC WXS_Germline v1.1 20210917 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WXS_Germline_v1.1_batch821_germline_20210917/C3N-05929.filtered.AD.5.noLongINDELS.vcf.gz 5758434 VCF dbf0cbda7e42eb09b7369a1dfd96e9a2 C3N-05929.WXS.N.hg38 df539074-52ef-4708-8e48-fef807654ea1 C3N-05991 GBM WXS_Germline v1.1 20211116 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_batch_1021.WXS_Germline_20211116/C3N-05991.filtered.AD.5.noLongINDELS.vcf.gz 7115966 VCF 789bdc7856661627ca1fd84b7e8628a7 C3N-05991.WXS.N.hg38 0650ae98-e90e-4ce8-a835-703349dc966e +C464694 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C464694.filtered.AD.5.noLongIndels.vcf.gz 4723334 VCF dcaa77fe346036200faa1fae8740748e C464694.WXS.N.hg38 51e69507-c1db-4630-bbd3-dfb6e176132b +C524103 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C524103.filtered.AD.5.noLongIndels.vcf.gz 4320193 VCF 049aa370ce92e24a133c36553275a82d C524103.WXS.N.hg38 bb991570-6c92-416b-a859-6ead7c509eb3 +C621273 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C621273.filtered.AD.5.noLongIndels.vcf.gz 3812113 VCF 993e58815a38921beb9d5efdda4be283 C621273.WXS.N.hg38 45c86f82-bcfc-4617-88fe-057ddca20656 +C685110 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C685110.filtered.AD.5.noLongIndels.vcf.gz 3990204 VCF b480d971472fcf74adef3c6ddd7febd4 C685110.WXS.N.hg38 5d4f21f6-d0a3-479d-a3fe-b84b1c27cfa4 +C760878 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C760878.filtered.AD.5.noLongIndels.vcf.gz 4302503 VCF 5113a2b17260c5407d9edeee30c8d39d C760878.WXS.N.hg38 26a2fe79-198a-45a6-9329-ac32ed951da4 +C761370 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C761370.filtered.AD.5.noLongIndels.vcf.gz 3876854 VCF 5799363c297ad14ca9484b86eafcbff3 C761370.WXS.N.hg38 a3f91b31-1981-4536-bea9-8789c28a0305 +C827913 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C827913.filtered.AD.5.noLongIndels.vcf.gz 4043909 VCF ec09028a6edfb30b279fee6b19db8446 C827913.WXS.N.hg38 2dd56dbe-e71c-40cd-8c48-c799ef53aa66 +C846363 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C846363.filtered.AD.5.noLongIndels.vcf.gz 4623810 VCF e33078dc012ed97e4dfbd5a68d6c5bc6 C846363.WXS.N.hg38 1a0e8e5c-708a-45fd-853f-e8d2ceed7813