From 9adf9e85632daf526bde6b5f12250db6ca4d60ad Mon Sep 17 00:00:00 2001 From: Matthew Wyczalkowski Date: Sat, 16 Jan 2021 12:10:23 -0600 Subject: [PATCH] Download 4 CCRCC HET samples missed in batch WXS.20210114 * /gscmnt/gc2521/dinglab/mwyczalk/projects.CPTAC3/import.Y3/WXS.20210116 --- BamMap/MGI.BamMap.dat | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/BamMap/MGI.BamMap.dat b/BamMap/MGI.BamMap.dat index ea45d6a..dc9d554 100644 --- a/BamMap/MGI.BamMap.dat +++ b/BamMap/MGI.BamMap.dat @@ -240,6 +240,7 @@ C3L-00447.WXS.N.hg38 C3L-00447 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3L-00447.WXS.T.HET_rkL2E4 C3L-00447 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/edad4172-5c85-4a93-aaff-46201aa1735e/CPT0006910009.WholeExome.RP-1303.bam 49548117424 BAM hg19 edad4172-5c85-4a93-aaff-46201aa1735e MGI C3L-00447.WXS.T.HET_rkL2E4.hg38 C3L-00447 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8aa9a5f4-4769-4f4e-8e32-d7d1f634d01b/b83ac703-865f-4ab2-bc70-64b2aa2b0dc3_wxs_gdc_realn.bam 68337491521 BAM hg38 8aa9a5f4-4769-4f4e-8e32-d7d1f634d01b MGI C3L-00447.WXS.T.HET_rkzopB C3L-00447 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/83b7c6d0-5703-4399-adc1-75ccebd187df/CPT0006860009.WholeExome.RP-1303.bam 20997947433 BAM hg19 83b7c6d0-5703-4399-adc1-75ccebd187df MGI +C3L-00447.WXS.T.HET_rkzopB.hg38 C3L-00447 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9d5950fd-fe30-4c96-bbc9-e0bd350a3698/8905f8f8-c66d-4893-ad4f-a158b3023f20_wxs_gdc_realn.bam 28971883153 BAM hg38 9d5950fd-fe30-4c96-bbc9-e0bd350a3698 MGI C3L-00447.WXS.T.hg38 C3L-00447 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/532f1bc2-2f90-4838-a000-aa75969e323c/51b9c76b-1f15-4493-9047-0d661fe133b6_gdc_realn.bam 31067852101 BAM hg38 532f1bc2-2f90-4838-a000-aa75969e323c MGI C3L-00448.WXS.A.hg38 C3L-00448 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/33f45a60-1b4d-4826-9e53-68f39203b9aa/a1652ca5-7ad7-429a-ad21-e87be1f47801_wxs_gdc_realn.bam 66556653213 BAM hg38 33f45a60-1b4d-4826-9e53-68f39203b9aa MGI C3L-00448.WXS.N.hg38 C3L-00448 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6a64be8d-b163-43be-bba5-ed310b4603df/202bd835-a4df-46f0-b2d6-6494f37fead8_gdc_realn.bam 31319090845 BAM hg38 6a64be8d-b163-43be-bba5-ed310b4603df MGI @@ -824,6 +825,7 @@ C3L-01601.WXS.T.hg38 C3L-01601 SAR WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC C3L-01603.WXS.A.hg38 C3L-01603 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/78d90952-0702-4498-babd-304a8883bc65/92c6bca3-e903-4b6a-b994-b4711ebbf5ba_wxs_gdc_realn.bam 36443694772 BAM hg38 78d90952-0702-4498-babd-304a8883bc65 MGI C3L-01603.WXS.N.hg38 C3L-01603 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dc692a2f-c698-4e56-a99c-4de2ab303ec1/0bf76841-56c0-4d7b-9ac8-404463eebb19_gdc_realn.bam 47249064201 BAM hg38 dc692a2f-c698-4e56-a99c-4de2ab303ec1 MGI C3L-01603.WXS.T.HET_roE4nw C3L-01603 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/06a293d4-4b40-43c7-8c8a-e1a7e8b4cb21/CPT0087030009.WholeExome.RP-1303.bam 25134536872 BAM hg19 06a293d4-4b40-43c7-8c8a-e1a7e8b4cb21 MGI +C3L-01603.WXS.T.HET_roE4nw.hg38 C3L-01603 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fd3812ba-d8e3-4fd2-a53c-6b51847f315e/aaedabcc-7240-4ff3-91ed-4a68ff39c3c9_wxs_gdc_realn.bam 35629788580 BAM hg38 fd3812ba-d8e3-4fd2-a53c-6b51847f315e MGI C3L-01603.WXS.T.HET_roEl76 C3L-01603 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/e5e31d36-6c04-4fbf-b38c-f1faaa13f39b/CPT0087020009.WholeExome.RP-1303.bam 21348531179 BAM hg19 e5e31d36-6c04-4fbf-b38c-f1faaa13f39b MGI C3L-01603.WXS.T.HET_roEl76.hg38 C3L-01603 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/25660fe8-ec5f-4e50-9045-d142648e35e7/9be1846a-7ec6-4fa3-861e-5505d3402179_wxs_gdc_realn.bam 29546693577 BAM hg38 25660fe8-ec5f-4e50-9045-d142648e35e7 MGI C3L-01603.WXS.T.hg38 C3L-01603 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9cf6e0c1-e777-4ca3-b956-07947dce8216/68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 65921297500 BAM hg38 9cf6e0c1-e777-4ca3-b956-07947dce8216 MGI @@ -1880,6 +1882,7 @@ C3N-00314.WXS.N.hg38 C3N-00314 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3N-00314.WXS.T.HET_rREv9L C3N-00314 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/bb6f1faf-ecc8-464d-8ca7-0e1d55aad8dd/CPT0012050009.WholeExome.RP-1303.bam 45924930918 BAM hg19 bb6f1faf-ecc8-464d-8ca7-0e1d55aad8dd MGI C3N-00314.WXS.T.HET_rREv9L.hg38 C3N-00314 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/86119262-6336-4f9d-b940-a694672965f4/61a1bd09-ad37-4441-8a13-c7a14beb786a_wxs_gdc_realn.bam 64235015996 BAM hg38 86119262-6336-4f9d-b940-a694672965f4 MGI C3N-00314.WXS.T.HET_wmELv8 C3N-00314 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/7c95044c-e391-48db-bdd2-b62452f4663c/CPT0012070011.WholeExome.RP-1303.bam 24857399548 BAM hg19 7c95044c-e391-48db-bdd2-b62452f4663c MGI +C3N-00314.WXS.T.HET_wmELv8.hg38 C3N-00314 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f9ba5fc6-0805-4505-b151-54ce3b3d53c9/e684014d-b553-455b-9c6d-9a845e2913d0_wxs_gdc_realn.bam 34624281535 BAM hg38 f9ba5fc6-0805-4505-b151-54ce3b3d53c9 MGI C3N-00314.WXS.T.HET_xvVWjl C3N-00314 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/d7455846-ff2c-4a9e-9a1e-2fd4a57fa4f1/CPT0012060012.WholeExome.RP-1303.bam 19612326488 BAM hg19 d7455846-ff2c-4a9e-9a1e-2fd4a57fa4f1 MGI C3N-00314.WXS.T.HET_xvVWjl.hg38 C3N-00314 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cd1eab3a-b5e5-4c4c-a858-4f1d011ff347/2d8ad3b1-9758-4bc7-b2a2-fd8a9550ca16_wxs_gdc_realn.bam 26588707002 BAM hg38 cd1eab3a-b5e5-4c4c-a858-4f1d011ff347 MGI C3N-00314.WXS.T.hg38 C3N-00314 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ef10ada7-bbcd-4238-be14-931764592a11/8bfede7e-2578-413c-bea6-447f26b9081d_gdc_realn.bam 31511944675 BAM hg38 ef10ada7-bbcd-4238-be14-931764592a11 MGI @@ -2393,6 +2396,7 @@ C3N-01219.WXS.T.hg38 C3N-01219 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_ C3N-01220.WXS.A.hg38 C3N-01220 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bfee0e0d-5839-425e-b734-eb0e13bfdd3f/0dbd842b-51dc-4a2d-8648-b704b7fe871f_wxs_gdc_realn.bam 50459240515 BAM hg38 bfee0e0d-5839-425e-b734-eb0e13bfdd3f MGI C3N-01220.WXS.N.hg38 C3N-01220 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/00678e28-01cc-423a-a99b-5b9ea325cf2b/9d8605f9-6281-4ce5-a4fa-4399e1902769_gdc_realn.bam 43802189710 BAM hg38 00678e28-01cc-423a-a99b-5b9ea325cf2b MGI C3N-01220.WXS.T.HET_wAgPl1 C3N-01220 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/e4d0b9c6-9286-4577-8ef6-43c7cde1390f/CPT0076320011.WholeExome.RP-1303.bam 23915491163 BAM hg19 e4d0b9c6-9286-4577-8ef6-43c7cde1390f MGI +C3N-01220.WXS.T.HET_wAgPl1.hg38 C3N-01220 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fbb6789e-e42a-4cbb-8f9d-e042ff294a06/43ec9bee-5438-4c71-9c45-fad51cabea55_wxs_gdc_realn.bam 33407040203 BAM hg38 fbb6789e-e42a-4cbb-8f9d-e042ff294a06 MGI C3N-01220.WXS.T.HET_xBz1J9 C3N-01220 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/9bb82efb-42bc-446c-9008-a767c61e7100/CPT0076340012.WholeExome.RP-1303.bam 21700841457 BAM hg19 9bb82efb-42bc-446c-9008-a767c61e7100 MGI C3N-01220.WXS.T.HET_xBz1J9.hg38 C3N-01220 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5e5b5a07-e448-4815-affa-2cfc7651113e/807221a2-cc6b-48e0-957c-ec6703e0bae7_wxs_gdc_realn.bam 29614724670 BAM hg38 5e5b5a07-e448-4815-affa-2cfc7651113e MGI C3N-01220.WXS.T.hg38 C3N-01220 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/61545e14-8d82-4101-8397-a13fc35295c5/5e08ba1d-7269-475b-bda6-e685083916a8_gdc_realn.bam 44272718325 BAM hg38 61545e14-8d82-4101-8397-a13fc35295c5 MGI