diff --git a/CPTAC3.Catalog.Summary.dat b/CPTAC3.Catalog.Summary.dat index 6ffc7e8..4fd6cba 100644 --- a/CPTAC3.Catalog.Summary.dat +++ b/CPTAC3.Catalog.Summary.dat @@ -400,7 +400,7 @@ C3L-00997 HNSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TTTT AA miR C3L-00999 HNSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TTTT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTTTTT AAA miRNA.hg38 T A MethArray TT AA C3L-01000 LSCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3L-01031 PDA WGS.hg19 T N A WXS.hg19 TT N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA -C3L-01032 PDA WGS.hg19 T N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT +C3L-01032 PDA WGS.hg19 T N WXS.hg19 TTT N A RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-01033 CCRCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA C3L-01034 CCRCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA C3L-01035 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -449,8 +449,8 @@ C3L-01154 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T C3L-01155 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-01156 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-01157 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3L-01158 PDA WGS.hg19 TT N WXS.hg19 TT N A RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TTTT AA -C3L-01160 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT +C3L-01158 PDA WGS.hg19 TT N WXS.hg19 TTT N AA RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TTTT AA +C3L-01160 PDA WGS.hg19 TT N WXS.hg19 TTT N A RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT C3L-01181 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-01182 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-01187 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -1294,7 +1294,7 @@ C3L-03597 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-03621 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03622 PDA WGS.hg19 WXS.hg19 TT N RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 MethArray C3L-03623 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-03624 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT +C3L-03624 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT C3L-03625 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03626 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03627 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -2310,7 +2310,7 @@ C3L-06894 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-06895 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-06897 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-06901 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-06912 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-06912 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT C3L-06914 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-06915 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-06917 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -2419,7 +2419,7 @@ C3L-07205 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-07206 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-07207 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-07210 STAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-07212 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-07212 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT C3L-07213 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-07214 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-07215 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -2975,7 +2975,7 @@ C3N-01195 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-01196 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-01197 GBM WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T AA WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT C3N-01198 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-01199 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-01199 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT C3N-01200 CCRCC WGS.hg19 TTTTT N A WXS.hg19 TTTTT N A RNA.fq TTTTTTTTTT AA miRNA.fq TTTTT A WGS.hg38 TTTTT N A WXS.hg38 TTTTT N A RNA.hg38 TTTTTTTTTTTTTTT AAA miRNA.hg38 TTTTT A MethArray TTTTTTTTTT AA C3N-01211 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT C3N-01212 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT @@ -3238,7 +3238,7 @@ C3N-01893 LSCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA C3N-01894 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01895 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01896 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-01897 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT +C3N-01897 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT C3N-01898 PDA WGS.hg19 WXS.hg19 TTT N RNA.fq TTTT AAAA miRNA.fq WGS.hg38 WXS.hg38 TTT N RNA.hg38 TTTTTT AAAAAA miRNA.hg38 MethArray C3N-01899 PDA WGS.hg19 WXS.hg19 TTT N RNA.fq TTTTTT AA miRNA.fq WGS.hg38 WXS.hg38 TTT N RNA.hg38 TTTTTTTTT AAA miRNA.hg38 MethArray C3N-01900 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -3516,8 +3516,8 @@ C3N-02586 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA C3N-02587 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-02588 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-02589 PDA WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3N-02590 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3N-02591 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT +C3N-02590 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT +C3N-02591 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT C3N-02592 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02593 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02594 PDA WGS.hg19 WXS.hg19 TT N RNA.fq TT AAAA miRNA.fq WGS.hg38 WXS.hg38 TT N RNA.hg38 TTT AAAAAA miRNA.hg38 MethArray @@ -3688,7 +3688,7 @@ C3N-02993 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-02994 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT C3N-02995 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02996 PDA WGS.hg19 WXS.hg19 TTT N RNA.fq TT AAAA miRNA.fq WGS.hg38 WXS.hg38 TTT N RNA.hg38 TTT AAAAAA miRNA.hg38 MethArray -C3N-02997 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT +C3N-02997 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02998 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02999 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03000 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray @@ -3944,7 +3944,7 @@ C3N-03784 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-03785 HNSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT C3N-03786 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03787 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-03788 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-03788 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT C3N-03789 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03790 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03791 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 22906c6..e68866f 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -5816,10 +5816,12 @@ C3L-01032.WGS.N C3L-01032 PDA WGS blood_normal CPT0167270002 CPT0167270002.Whole C3L-01032.WGS.N.hg38 C3L-01032 PDA WGS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wgs_gdc_realn.bam 87485264872 BAM NA fd2f7033-bbf5-4123-8239-e441e0142ef6 e1d24bcd2aa88684e95827a5c8540617 hg38 Blood Derived Normal C3L-01032-31 C3L-01032.WGS.T.BULK_PNN8DJn C3L-01032 PDA WGS tumor CPT0170510026 CPT0170510026.WholeGenome.RP-1303.bam 65030423125 BAM NA cd756237-e800-4591-a9f5-e23142047d4b 91cacd2ceb0bf819b2a9a70e671ff29f hg19 Primary Tumor C3L-01032-01 sample_tag=BULK_PNN8DJn Duplicate item: PDA Pilot - bulk-derived DNA C3L-01032.WGS.T.BULK_PNN8DJn.hg38 C3L-01032 PDA WGS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wgs_gdc_realn.bam 95856631733 BAM NA aeb6c92c-5a7b-4439-b74d-b2c0fba9d359 c38c190e4a26b47361ecb5f0eef5c96c hg38 Primary Tumor C3L-01032-01 sample_tag=BULK_PNN8DJn Duplicate item: PDA Pilot - bulk-derived DNA +C3L-01032.WXS.A C3L-01032 PDA WXS tissue_normal CPT0170530038 CPT0170530038.WholeExome.RP-1303.bam 40072417441 BAM NA 345637cd-f638-430c-af43-683b3ad7aff4 62ad5892185785e4e45ee1529a7402d7 hg19 Solid Tissue Normal C3L-01032-05 C3L-01032.WXS.N C3L-01032 PDA WXS blood_normal CPT0167270002 CPT0167270002.WholeExome.RP-1303.bam 29254406550 BAM NA 6f5110f3-ee1b-4870-846a-e4a07daaf8c7 7a98e97bea7a0b25e892afd9bb57eec9 hg19 Blood Derived Normal C3L-01032-31 C3L-01032.WXS.N.hg38 C3L-01032 PDA WXS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wxs_gdc_realn.bam 39785289287 BAM NA 985e5e24-550a-4d9e-967b-108945601415 53570089d284b757275d1ab61df4aaab hg38 Blood Derived Normal C3L-01032-31 C3L-01032.WXS.T.BULK_PNN8DJn.hg38.high_cov C3L-01032 PDA WXS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wxs_gdc_realn.bam 63667596295 BAM NA e31e9424-a0b1-41c1-b75c-f3af979cc6f0 438e2c980054b4a65e3528fa4c5f954c hg38 Primary Tumor C3L-01032-01 sample_tag=BULK_PNN8DJn local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3L-01032.WXS.T.BULK_PNN8DJn.high_cov C3L-01032 PDA WXS tumor CPT0170510026 CPT0170510026.WholeExome.RP-1303.bam 45869354525 BAM NA b37b103a-d2b2-45a4-86f2-b26464796cfb 4679ab3cbdaef3d21174352ca48f7440 hg19 Primary Tumor C3L-01032-01 sample_tag=BULK_PNN8DJn local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3L-01032.WXS.T C3L-01032 PDA WXS tumor CPT0170510022 CPT0170510022.WholeExome.RP-1303.bam 60768919984 BAM NA 4758f275-76bd-41b2-b57e-361d3f2006ce c2f5f95b5679db758c682621402355c1 hg19 Primary Tumor C3L-01032-01 C3L-01032.WXS.T.CORE_G66EqK0.core.high_cov C3L-01032 PDA WXS tumor CPT0170510019 CPT0170510019.WholeExome.RP-1303.bam 60472160349 BAM NA cdeb2cfd-8a06-455e-8e84-b7b9235d2373 2c34dc6a2e82796659661516ba3a1f7a hg19 Primary Tumor C3L-01032-01 sample_tag=CORE_G66EqK0 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-01032.WXS.T.CORE_G66EqK0.hg38.core.high_cov C3L-01032 PDA WXS tumor CPT0170510019 d30ab124-bcd9-49ba-bf31-10a7bfa5cfdb_wxs_gdc_realn.bam 84162158646 BAM NA a5f1081e-8347-481c-8f09-cc68fdaa2e48 38a14481029991254a3f23154899fbe2 hg38 Primary Tumor C3L-01032-01 sample_tag=CORE_G66EqK0 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-01033.MethArray.Green.A C3L-01033 CCRCC Methylation Array tissue_normal CPT0170080006 204930640024_R08C01_Grn.idat 13677955 IDAT Green 2838755c-4fcc-4325-b639-4932a9124cc0 702329e80c15ebbd01eadfb785908458 NA Solid Tissue Normal C3L-01033-05 @@ -6479,11 +6481,13 @@ C3L-01158.WGS.T.BULK_PNN43nl.hg38 C3L-01158 PDA WGS tumor CPT0171630026 d50fb1bc C3L-01158.WGS.T.CORE_J66534l.core C3L-01158 PDA WGS tumor CPT0171630020 CPT0171630020.WholeGenome.RP-1303.bam 77947699392 BAM NA fcbf52e0-3eaa-48f0-8f02-2628928080df 8dfd876c2a4bb02a45f48aabcc314d33 hg19 Primary Tumor C3L-01158-01 sample_tag=CORE_J66534l local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3L-01158.WGS.T.CORE_J66534l.hg38.core C3L-01158 PDA WGS tumor CPT0171630020 a3da4c4a-e715-44c1-bc5a-2a1cfbd0c4ee_wgs_gdc_realn.bam 110266028424 BAM NA 9829625a-e392-4560-b898-c677a3afbbb9 c5a9cece0cbb8c5823957ee9a5738595 hg38 Primary Tumor C3L-01158-01 sample_tag=CORE_J66534l local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650055 CPT0171650055.WholeExome.RP-1303.bam 39910866153 BAM NA f6b0e467-6f94-47b2-975d-e6a11ec14ad7 b756fa7b81328859d82c0f4eeff048ce hg19 Solid Tissue Normal C3L-01158-05 +C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650057 CPT0171650057.WholeExome.RP-1303.bam 58423074859 BAM NA 30c7d156-27fd-4dd5-9de1-f34c9b2cc1f5 7502a81ce9204216b87a382f043d859d hg19 Solid Tissue Normal C3L-01158-05 C3L-01158.WXS.A.hg38 C3L-01158 PDA WXS tissue_normal CPT0171650055 1e789670-d307-4a56-99ab-7bd348c1555e_wxs_gdc_realn.bam 55878504036 BAM NA d80b306c-5c0c-470d-a762-4b277f9acb66 dc01eb5993765358f8e4dcfd528d93fc hg38 Solid Tissue Normal C3L-01158-05 C3L-01158.WXS.N C3L-01158 PDA WXS blood_normal CPT0171560002 CPT0171560002.WholeExome.RP-1303.bam 27117657273 BAM NA c989a5e9-3ec9-4d76-9896-665db392d8fd 449f6308f9eedcec5f87e21573c19783 hg19 Blood Derived Normal C3L-01158-31 C3L-01158.WXS.N.hg38 C3L-01158 PDA WXS blood_normal CPT0171560002 81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wxs_gdc_realn.bam 36792322242 BAM NA 65ade05f-b8cc-4d7d-b501-cd91d08e5885 7609959f62306cac59f64122f92c48aa hg38 Blood Derived Normal C3L-01158-31 C3L-01158.WXS.T.BULK_PNN43nl.hg38.high_cov C3L-01158 PDA WXS tumor CPT0171630026 d50fb1bc-2197-437c-b9d6-b142fe878df6_wxs_gdc_realn.bam 62459308600 BAM NA f72ee660-de37-46ad-840e-a64487b77e77 c7c301f7d5ee379ab96e331ea806c7c2 hg38 Primary Tumor C3L-01158-01 sample_tag=BULK_PNN43nl local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3L-01158.WXS.T.BULK_PNN43nl.high_cov C3L-01158 PDA WXS tumor CPT0171630026 CPT0171630026.WholeExome.RP-1303.bam 43909051885 BAM NA cc0b88e0-7026-4b54-bbb6-a3a09d280386 d624417699c5b6a927dee701a6a97103 hg19 Primary Tumor C3L-01158-01 sample_tag=BULK_PNN43nl local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3L-01158.WXS.T C3L-01158 PDA WXS tumor CPT0171630022 CPT0171630022.WholeExome.RP-1303.bam 58476666614 BAM NA 88698e11-6693-4808-9a68-754b4bade5d4 d1626f094063b8260c8c982171edaf59 hg19 Primary Tumor C3L-01158-01 C3L-01158.WXS.T.CORE_J66534l.core.high_cov C3L-01158 PDA WXS tumor CPT0171630020 CPT0171630020.WholeExome.RP-1303.bam 70747936289 BAM NA a9c6ef7e-e552-48bf-8d86-ad97cd828c25 18c43c10e1f1ef68d5353e30a6373750 hg19 Primary Tumor C3L-01158-01 sample_tag=CORE_J66534l local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-01158.WXS.T.CORE_J66534l.hg38.core.high_cov C3L-01158 PDA WXS tumor CPT0171630020 a3da4c4a-e715-44c1-bc5a-2a1cfbd0c4ee_wxs_gdc_realn.bam 97100762718 BAM NA 0026fb13-a3e7-405e-a4ac-7f108096399b 83a8504ac01cb52f1fa1bfd443c6c56c hg38 Primary Tumor C3L-01158-01 sample_tag=CORE_J66534l local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-01160.MethArray.Green.T.BULK_NkkyJMp C3L-01160 PDA Methylation Array tumor CPT0170600024 203561450073_R08C01_Grn.idat 13676221 IDAT Green 1951c2f6-4401-471c-803e-6fd787e360cf 2159d6b1bed93b26f41cff198a082633 NA Primary Tumor C3L-01160-01 sample_tag=BULK_NkkyJMp Duplicate item: PDA Pilot - bulk-derived DNA @@ -6505,10 +6509,12 @@ C3L-01160.WGS.T.BULK_NkkyJMp C3L-01160 PDA WGS tumor CPT0170600024 CPT0170600024 C3L-01160.WGS.T.BULK_NkkyJMp.hg38 C3L-01160 PDA WGS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wgs_gdc_realn.bam 96428254780 BAM NA 05cb8a97-9225-4a2c-b9e4-048375f3478d 808a5270db25c341e14c9d040aaa7e33 hg38 Primary Tumor C3L-01160-01 sample_tag=BULK_NkkyJMp Duplicate item: PDA Pilot - bulk-derived DNA C3L-01160.WGS.T.CORE_ERRmwz0.core C3L-01160 PDA WGS tumor CPT0170600018 CPT0170600018.WholeGenome.RP-1303.bam 64661419007 BAM NA e4454b36-afcf-4a80-a7a8-18d4b3af4cf0 3b727abd21ea98718412b97f20157e8e hg19 Primary Tumor C3L-01160-01 sample_tag=CORE_ERRmwz0 local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3L-01160.WGS.T.CORE_ERRmwz0.hg38.core C3L-01160 PDA WGS tumor CPT0170600018 a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wgs_gdc_realn.bam 92384111277 BAM NA 1000b82e-99a4-4743-90b4-625b6dc12984 7277b4142209956bb6558dfa255dd487 hg38 Primary Tumor C3L-01160-01 sample_tag=CORE_ERRmwz0 local_meta=.core Duplicate item: PDA Pilot - core-derived DNA +C3L-01160.WXS.A C3L-01160 PDA WXS tissue_normal CPT0170620038 CPT0170620038.WholeExome.RP-1303.bam 60073456569 BAM NA a51fa67d-e540-4267-aa16-d72a3465ba9a 4d9377bf87ca2aa4b9dbb6f2b4292705 hg19 Solid Tissue Normal C3L-01160-05 C3L-01160.WXS.N C3L-01160 PDA WXS blood_normal CPT0167290002 CPT0167290002.WholeExome.RP-1303.bam 24421148529 BAM NA afa7c130-3731-41ca-a718-fbdf0600a69a d111ad4dc20f7c2bd14b5f08e61f54e6 hg19 Blood Derived Normal C3L-01160-31 C3L-01160.WXS.N.hg38 C3L-01160 PDA WXS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wxs_gdc_realn.bam 33237579668 BAM NA 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 8f69626d2497a615179f52cf6589d1b6 hg38 Blood Derived Normal C3L-01160-31 C3L-01160.WXS.T.BULK_NkkyJMp.hg38.high_cov C3L-01160 PDA WXS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wxs_gdc_realn.bam 80069242436 BAM NA ad37577b-d536-4929-9cbc-cb39d4bb9969 7a58e168809bef442c484ba5f55020b2 hg38 Primary Tumor C3L-01160-01 sample_tag=BULK_NkkyJMp local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3L-01160.WXS.T.BULK_NkkyJMp.high_cov C3L-01160 PDA WXS tumor CPT0170600024 CPT0170600024.WholeExome.RP-1303.bam 56175912575 BAM NA 9de76634-b251-4bdd-805d-5070367b7dc9 6b6a142e029fa48832df21f540d3509a hg19 Primary Tumor C3L-01160-01 sample_tag=BULK_NkkyJMp local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3L-01160.WXS.T C3L-01160 PDA WXS tumor CPT0170600020 CPT0170600020.WholeExome.RP-1303.bam 47421435720 BAM NA 4f64a688-7914-4871-97f8-40c38bc3bfc0 4dc9caa67b8f17185b3caa5e2bda076a hg19 Primary Tumor C3L-01160-01 C3L-01160.WXS.T.CORE_ERRmwz0.core.high_cov C3L-01160 PDA WXS tumor CPT0170600018 CPT0170600018.WholeExome.RP-1303.bam 65639438807 BAM NA 3ad0348b-748f-4318-83ca-d3e13e2a42db 4e2044d8fb0a94391757a5f185fc32c5 hg19 Primary Tumor C3L-01160-01 sample_tag=CORE_ERRmwz0 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-01160.WXS.T.CORE_ERRmwz0.hg38.core.high_cov C3L-01160 PDA WXS tumor CPT0170600018 a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wxs_gdc_realn.bam 91330545140 BAM NA b515de0e-fcee-4a88-85f6-29e4dc115ccc eb74f04693eb9011204a648f9a831134 hg38 Primary Tumor C3L-01160-01 sample_tag=CORE_ERRmwz0 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-01182.MethArray.Green.Tpb C3L-01182 AML Methylation Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Grn.idat 13677885 IDAT Green e5428025-e008-40fe-9537-e0748fe03957 9627f2fbd75c66f1a19c6dfcd9a254db NA Primary Blood Derived Cancer - Peripheral Blood C3L-01182-58 @@ -14571,6 +14577,7 @@ C3L-03624.WXS.N C3L-03624 PDA WXS blood_normal CPT0198630002 CPT0198630002.Whole C3L-03624.WXS.N.hg38 C3L-03624 PDA WXS blood_normal CPT0198630002 c96c0aee-5f31-409e-9188-8fcf3653cdc0_wxs_gdc_realn.bam 33898148249 BAM NA dbbaffe7-de40-4707-ac67-682934f2c5ca 8607275b484c3152010691c6d88dd5bd hg38 Blood Derived Normal C3L-03624-31 C3L-03624.WXS.T.BULK_VONgrMO.hg38.high_cov C3L-03624 PDA WXS tumor CPT0198600029 a4653823-73c2-46db-b7f2-6dca71812990_wxs_gdc_realn.bam 60382152695 BAM NA 791d21fe-cffe-47fe-afef-ab032648cd52 2eaf095ef634b2ad9aa42b20e9271261 hg38 Primary Tumor C3L-03624-02 sample_tag=BULK_VONgrMO local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3L-03624.WXS.T.BULK_VONgrMO.high_cov C3L-03624 PDA WXS tumor CPT0198600029 CPT0198600029.WholeExome.RP-1303.bam 42976995465 BAM NA 40f9adc9-29c0-485c-b99e-866f7e1cf4c6 18bb27b3df391e6e6556ad5de50f2dec hg19 Primary Tumor C3L-03624-02 sample_tag=BULK_VONgrMO local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3L-03624.WXS.T C3L-03624 PDA WXS tumor CPT0198600025 CPT0198600025.WholeExome.RP-1303.bam 47310615021 BAM NA 8f713792-8585-41da-be6c-91627cea748b f13dbd12d947dfdd776bb9594751dc4c hg19 Primary Tumor C3L-03624-02 C3L-03624.WXS.T.CORE_M89OglR.core.high_cov C3L-03624 PDA WXS tumor CPT0198600023 CPT0198600023.WholeExome.RP-1303.bam 41660712690 BAM NA f9c7e8bb-2cdd-4adc-9d21-de3b24c850aa 79a0844548612a770e688e8612aa2e17 hg19 Primary Tumor C3L-03624-02 sample_tag=CORE_M89OglR local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-03624.WXS.T.CORE_M89OglR.hg38.core.high_cov C3L-03624 PDA WXS tumor CPT0198600023 85ace2b1-5081-4afa-ac26-f14706330702_wxs_gdc_realn.bam 58465454619 BAM NA 45881215-b482-43ca-b3b8-260ecd7c413e 00d7ebbc7647e175d0e3cc371973da64 hg38 Primary Tumor C3L-03624-02 sample_tag=CORE_M89OglR local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3L-03628.MethArray.Green.T C3L-03628 PDA Methylation Array tumor CPT0198700008 203561450100_R06C01_Grn.idat 13676221 IDAT Green 1050e3e8-af97-4065-9865-1c7d9194918e 1ea94a02fc977c54a44cc7e783177ab8 NA Primary Tumor C3L-03628-01,C3L-03628-02 @@ -19983,6 +19990,8 @@ C3L-06809.WXS.Nbc C3L-06809 AML WXS buccal_normal CPT0423880001 CPT0423880001.Wh C3L-06809.WXS.Nbc.hg38 C3L-06809 AML WXS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wxs_gdc_realn.bam 20270095113 BAM NA b95d946c-ecc7-4fdf-96d6-76d3ee43c96d cf9d5e475dd8f8a828fa4d60b1705204 hg38 Buccal Cell Normal C3L-06809-51,C3L-06809-52,C3L-06809-53 C3L-06809.WXS.Tbm C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeExome.RP-1303.bam 22623712547 BAM NA 52ff40ad-09e1-436a-9c29-18e9775426f0 5869900d905564e8fb2fd52e03592ba3 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-06809-56 C3L-06809.WXS.Tbm.hg38 C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wxs_gdc_realn.bam 31582854239 BAM NA a8d547fc-05e3-482d-8b31-68ce5408887a 4703caaf6cc1d1dbafa4e16e3b44c06a hg38 Primary Blood Derived Cancer - Bone Marrow C3L-06809-56 +C3L-06912.MethArray.Green.T C3L-06912 LGG Methylation Array tumor CPT0388940011 206009560066_R04C01_Grn.idat 13677950 IDAT Green d8921cb7-13c6-493a-bec1-956b0c0b9acf b986d5a861649338c3fdd0b9409b907a NA Primary Tumor C3L-06912-01 +C3L-06912.MethArray.Red.T C3L-06912 LGG Methylation Array tumor CPT0388940011 206009560066_R04C01_Red.idat 13677950 IDAT Red b31b7919-5e5e-4f48-b680-be7b5b94935c eb5afa5e81d98239383277ef71b86715 NA Primary Tumor C3L-06912-01 C3L-06912.miRNA-Seq.T C3L-06912 LGG miRNA-Seq tumor CPT0388940008 220505_UNC32-K00270_0319_AHMV2KBBXY_CGGAAT_S5_L003_R1_001.unaln.bam 386996923 BAM NA c31ac29e-a56e-4e48-b377-caf32badf113 b3050cf5276ec747c59d992e1fc45dd1 NA Primary Tumor C3L-06912-01 C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 @@ -20231,6 +20240,8 @@ C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal CPT0408730002 CPT0408730002.Whole C3L-07202.WXS.N.hg38 C3L-07202 GBM WXS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wxs_gdc_realn.bam 36976133990 BAM NA 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed f43c63d1055e4876cbf61e4b74f5109c hg38 Blood Derived Normal C3L-07202-31 C3L-07202.WXS.T C3L-07202 GBM WXS tumor CPT0407650010 CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM NA 08c3554c-d4d2-4e22-a091-2a8a22a88d90 eca21478e7eed4dcfe81c924247d563f hg19 Primary Tumor C3L-07202-01 C3L-07202.WXS.T.hg38 C3L-07202 GBM WXS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wxs_gdc_realn.bam 35323200367 BAM NA 5c4c8930-d564-4e1a-97bd-5971d536af18 d33bd559600876512b74d4a51a654079 hg38 Primary Tumor C3L-07202-01 +C3L-07212.MethArray.Green.T C3L-07212 LGG Methylation Array tumor CPT0447560012 206250290178_R01C01_Grn.idat 13677942 IDAT Green 4f08cfbd-be2d-4a50-b19b-e1b22347033d bf4dad83e8e006bbe9e2d55985973d85 NA Primary Tumor C3L-07212-01 +C3L-07212.MethArray.Red.T C3L-07212 LGG Methylation Array tumor CPT0447560012 206250290178_R01C01_Red.idat 13677942 IDAT Red 8e8b37a3-d0f9-41da-a850-2baf9643d279 dc45b12943ecb40ace61cdc1f7ff1143 NA Primary Tumor C3L-07212-01 C3L-07212.miRNA-Seq.T C3L-07212 LGG miRNA-Seq tumor CPT0447560007 220505_UNC32-K00270_0319_AHMV2KBBXY_CTAGCT_S6_L003_R1_001.unaln.bam 310872045 BAM NA e44650c7-2e73-4786-bb16-e7a3d837fe16 06345681442ce851c00904871d0a65ba NA Primary Tumor C3L-07212-01 C3L-07213.MethArray.Green.T C3L-07213 GBM Methylation Array tumor CPT0407970010 205555390176_R04C01_Grn.idat 13677955 IDAT Green ed6a2433-0756-4efa-8a10-cec2fcb27e88 6a00a334c1c3fb59edcc99068255357a NA Primary Tumor C3L-07213-01 C3L-07213.MethArray.Red.T C3L-07213 GBM Methylation Array tumor CPT0407970010 205555390176_R04C01_Red.idat 13677955 IDAT Red 4a399bb5-ed14-4a50-818d-c651f6d48540 944f68e32368dd49aabda726d93d9349 NA Primary Tumor C3L-07213-01 @@ -26510,6 +26521,8 @@ C3N-01197.WXS.N C3N-01197 GBM WXS blood_normal CPT0078500002 CPT0078500002.Whole C3N-01197.WXS.N.hg38 C3N-01197 GBM WXS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 36637489156 BAM NA ba871c1f-1766-4008-8b79-29ec2148b586 037cce1a0c462d957ade8dda8f3cd8c2 hg38 Blood Derived Normal C3N-01197-31 C3N-01197.WXS.T C3N-01197 GBM WXS tumor CPT0078480013 CPT0078480013.WholeExome.RP-1303.bam 31119460682 BAM NA 742678c4-a327-4aef-be8d-38b26605cb19 1a1a4aa605f5b01ab0b965c616db064b hg19 Primary Tumor C3N-01197-01 C3N-01197.WXS.T.hg38 C3N-01197 GBM WXS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 43619971997 BAM NA 813f42ab-91e9-4dbc-8d09-bf15289946f8 9bb05be85ddad759ddbc130f235cfa58 hg38 Primary Tumor C3N-01197-01 +C3N-01199.MethArray.Green.T C3N-01199 GBM Methylation Array tumor CPT0457680011 205987780179_R05C01_Grn.idat 13677940 IDAT Green 7cfef310-16d3-4e83-ade2-cab54a591e2a df039c0706457135585e665474873fa2 NA Primary Tumor C3N-01199-04 +C3N-01199.MethArray.Red.T C3N-01199 GBM Methylation Array tumor CPT0457680011 205987780179_R05C01_Red.idat 13677940 IDAT Red 82e35981-d14d-4901-b85a-0da82e7dbf87 e28beecf5bc080a642ce933c92e170b1 NA Primary Tumor C3N-01199-04 C3N-01199.miRNA-Seq.T C3N-01199 GBM miRNA-Seq tumor CPT0457680008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTATAC_S7_L003_R1_001.unaln.bam 264368830 BAM NA 64dab22d-ddf0-4ceb-9775-95cb13aba156 63b556759c4323d4308c452bf5397ad1 NA Primary Tumor C3N-01199-04 C3N-01200.MethArray.Green.A C3N-01200 CCRCC Methylation Array tissue_normal CPT0075170009 203027380024_R02C01_Grn.idat 13676241 IDAT Green 13f31e09-fb0c-4826-98b0-35e9ac240679 a4532e636b295ff7479a800be4fab853 NA Solid Tissue Normal C3N-01200-06 C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor CPT0075130009 202184990059_R08C01_Grn.idat 13676231 IDAT Green 3ceb6106-0d95-40e2-8993-b545fc0ea3ef cc153bcdbbc599278d49da61362a91a4 NA Primary Tumor C3N-01200-02 @@ -30174,6 +30187,7 @@ C3N-01897.WXS.N C3N-01897 PDA WXS blood_normal CPT0162360002 CPT0162360002.Whole C3N-01897.WXS.N.hg38 C3N-01897 PDA WXS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wxs_gdc_realn.bam 30186380588 BAM NA 9eacaf4b-96a4-4053-b3cb-c725c77a347b 011dd0f8e3dbd30c9774ac7ab141ce79 hg38 Blood Derived Normal C3N-01897-31 C3N-01897.WXS.T.BULK_OVLqnQ.hg38.high_cov C3N-01897 PDA WXS tumor CPT0162300025 84bc5e5b-8adb-4fb6-a322-3b24daf08ec8_wxs_gdc_realn.bam 69545022042 BAM NA 55945505-5a16-4af4-bd12-9be92a741eee f3983d6f5d74254abe653aad11e5129f hg38 Primary Tumor C3N-01897-01 sample_tag=BULK_OVLqnQ local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3N-01897.WXS.T.BULK_OVLqnQ.high_cov C3N-01897 PDA WXS tumor CPT0162300025 CPT0162300025.WholeExome.RP-1303.bam 48974407289 BAM NA 5773f62a-fd76-4ab1-b457-a9d41dc937d2 7e0032225587ada183fbb6bb4eaed399 hg19 Primary Tumor C3N-01897-01 sample_tag=BULK_OVLqnQ local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3N-01897.WXS.T C3N-01897 PDA WXS tumor CPT0162300021 CPT0162300021.WholeExome.RP-1303.bam 37517675995 BAM NA a8f404b2-3e0b-481b-b81b-2cc0d68e8296 be207ab67d0c5d54938be3d03dbb461a hg19 Primary Tumor C3N-01897-01 C3N-01897.WXS.T.CORE_GyzgO3.core.high_cov C3N-01897 PDA WXS tumor CPT0162300019 CPT0162300019.WholeExome.RP-1303.bam 68103574759 BAM NA dec364d2-cc30-4ed1-8fbe-81ecd61f016f 9396ce327577e44dbfa21202ad7b257a hg19 Primary Tumor C3N-01897-01 sample_tag=CORE_GyzgO3 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-01897.WXS.T.CORE_GyzgO3.hg38.core.high_cov C3N-01897 PDA WXS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wxs_gdc_realn.bam 94888641588 BAM NA 9275086f-3c69-403f-9051-2c857279c158 4fd17ea762785c62b06eaac8819e4c97 hg38 Primary Tumor C3N-01897-01 sample_tag=CORE_GyzgO3 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-01898.RNA-Seq.chimeric.A.BIOTEXT_4EGKz0.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.chimeric.gdc_realn.bam 114455235 BAM chimeric 96120554-bff3-4ef4-8bf5-277d28ae620e 09dc027828665a4bf459407ac56db228 hg38 Solid Tissue Normal C3N-01898-05 sample_tag=BIOTEXT_4EGKz0 Duplicate item: PDA BioTEXT RNA @@ -33971,6 +33985,7 @@ C3N-02590.WXS.N C3N-02590 PDA WXS blood_normal CPT0187630002 CPT0187630002.Whole C3N-02590.WXS.N.hg38 C3N-02590 PDA WXS blood_normal CPT0187630002 ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wxs_gdc_realn.bam 41090038552 BAM NA a0da46e0-ff1f-4434-997e-68947453421b a2fdf758635ad432f3b799382fe96992 hg38 Blood Derived Normal C3N-02590-31 C3N-02590.WXS.T.BULK_PNz1QDy.hg38.high_cov C3N-02590 PDA WXS tumor CPT0187590026 aa022931-97a5-4a8f-89f0-6acbd1d6fc6c_wxs_gdc_realn.bam 71035417727 BAM NA 28c76065-6382-4508-b859-3260f21669b5 57c9b435adbb8c81134a1774c2138cfc hg38 Primary Tumor C3N-02590-01 sample_tag=BULK_PNz1QDy local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3N-02590.WXS.T.BULK_PNz1QDy.high_cov C3N-02590 PDA WXS tumor CPT0187590026 CPT0187590026.WholeExome.RP-1303.bam 50413514189 BAM NA 9d9f8dc0-4476-43eb-a68a-c56559689ec9 5b50bffef5596f44cdec4372c0a79e21 hg19 Primary Tumor C3N-02590-01 sample_tag=BULK_PNz1QDy local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3N-02590.WXS.T C3N-02590 PDA WXS tumor CPT0187590022 CPT0187590022.WholeExome.RP-1303.bam 36033454513 BAM NA 7580b76c-0327-414e-99bd-e99392202b66 b3230644d8fc374cf84baad478cac8f9 hg19 Primary Tumor C3N-02590-01 C3N-02590.WXS.T.CORE_J6NZQw9.core.high_cov C3N-02590 PDA WXS tumor CPT0187590020 CPT0187590020.WholeExome.RP-1303.bam 63041283424 BAM NA 08dfed58-87d9-40c9-bddb-7591263acf11 e857bddcb895a58fe8fd3555765a62ef hg19 Primary Tumor C3N-02590-01 sample_tag=CORE_J6NZQw9 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-02590.WXS.T.CORE_J6NZQw9.hg38.core.high_cov C3N-02590 PDA WXS tumor CPT0187590020 66cd1789-c1cf-4b80-aa3b-76081ab0ea54_wxs_gdc_realn.bam 86827491680 BAM NA 60d3161a-5889-4f09-8a1f-5c02d20c4b15 c42f4cd4a9a0b7dfdbc1a5f530696ea3 hg38 Primary Tumor C3N-02590-01 sample_tag=CORE_J6NZQw9 local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-02591.MethArray.Green.T.BULK_1xqWz3 C3N-02591 PDA Methylation Array tumor CPT0162710034 203561450046_R01C01_Grn.idat 13676211 IDAT Green 7b9ccc62-9004-4c66-ae37-6c59f001ddad d80ca16e339d9276a9743b34a47f7ade NA Primary Tumor C3N-02591-01 sample_tag=BULK_1xqWz3 Duplicate item: PDA Pilot - bulk-derived DNA @@ -33987,6 +34002,7 @@ C3N-02591.WXS.N C3N-02591 PDA WXS blood_normal CPT0162750002 CPT0162750002.Whole C3N-02591.WXS.N.hg38 C3N-02591 PDA WXS blood_normal CPT0162750002 4968424c-2b02-4d69-92ca-6216433228ac_wxs_gdc_realn.bam 35122427782 BAM NA 2ac0e90d-c37c-4044-aa66-74caed82b248 2fd2650f90e27884e462d4d3a2c09c67 hg38 Blood Derived Normal C3N-02591-31 C3N-02591.WXS.T.BULK_1xqWz3.hg38.high_cov C3N-02591 PDA WXS tumor CPT0162710034 c62bcb6f-642a-42a2-a715-d7962bb7f8bc_wxs_gdc_realn.bam 68185993871 BAM NA faefc7e3-98d6-4018-af5f-9674ffdf8c23 5f66cc1a899bb2316575d41d2a3421a3 hg38 Primary Tumor C3N-02591-01 sample_tag=BULK_1xqWz3 local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3N-02591.WXS.T.BULK_1xqWz3.high_cov C3N-02591 PDA WXS tumor CPT0162710034 CPT0162710034.WholeExome.RP-1303.bam 48349896562 BAM NA f97ddea4-e55c-4caa-b712-1603730df0e4 5c9ae41358fd5064fccba09728570faf hg19 Primary Tumor C3N-02591-01 sample_tag=BULK_1xqWz3 local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3N-02591.WXS.T C3N-02591 PDA WXS tumor CPT0162710030 CPT0162710030.WholeExome.RP-1303.bam 27939284227 BAM NA 42d07bfb-e1e3-4936-95d1-aba0e3c26895 783fb6c5012a08327c7dafc6998c9184 hg19 Primary Tumor C3N-02591-01 C3N-02591.WXS.T.CORE_R2nOrL.core.high_cov C3N-02591 PDA WXS tumor CPT0162710028 CPT0162710028.WholeExome.RP-1303.bam 54648593175 BAM NA 967859b6-b9ba-4f0a-bd76-172bf914bca1 7721d00df8535dab68583a4740ba1799 hg19 Primary Tumor C3N-02591-01 sample_tag=CORE_R2nOrL local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-02591.WXS.T.CORE_R2nOrL.hg38.core.high_cov C3N-02591 PDA WXS tumor CPT0162710028 ac04ab66-7985-49f7-b93c-15543bedc183_wxs_gdc_realn.bam 77193314643 BAM NA 43299d09-3a6a-4682-ab39-4a2396d6f71c a38eaa48bac8344a9ca7c04be4d8aba2 hg38 Primary Tumor C3N-02591-01 sample_tag=CORE_R2nOrL local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-02592.MethArray.Green.T C3N-02592 PDA Methylation Array tumor CPT0162760006 203273630258_R01C01_Grn.idat 13676231 IDAT Green 8c2f67c5-a2ed-43c6-8617-4c42e766ad4b f728cb3269859f1357004f10acbd33b2 NA Primary Tumor C3N-02592-01 @@ -35966,6 +35982,7 @@ C3N-02997.WXS.N C3N-02997 PDA WXS blood_normal CPT0187920002 CPT0187920002.Whole C3N-02997.WXS.N.hg38 C3N-02997 PDA WXS blood_normal CPT0187920002 ec85c30a-c8b0-4610-944a-85e223670cd6_wxs_gdc_realn.bam 33307097960 BAM NA d85499af-013d-4afd-9be4-263b92a2f996 75e74ef41a1b76496bf0f84f7ea53219 hg38 Blood Derived Normal C3N-02997-31 C3N-02997.WXS.T.BULK_VO7vzkM.hg38.high_cov C3N-02997 PDA WXS tumor CPT0187880029 f4651bfd-45a2-4d90-a791-3a6ea57fac74_wxs_gdc_realn.bam 61514647521 BAM NA 33fbb651-d2ac-491e-9e61-bdaae9adc2db ef27c289f122ddbc50f79dc493243522 hg38 Primary Tumor C3N-02997-01 sample_tag=BULK_VO7vzkM local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA C3N-02997.WXS.T.BULK_VO7vzkM.high_cov C3N-02997 PDA WXS tumor CPT0187880029 CPT0187880029.WholeExome.RP-1303.bam 43567205475 BAM NA 7b4a54d0-a1dc-4327-98a5-b52ca16d1d41 703c881c2d3f542b5f6ccbe40869ab1e hg19 Primary Tumor C3N-02997-01 sample_tag=BULK_VO7vzkM local_meta=.high_cov Duplicate item: PDA Pilot - bulk-derived DNA +C3N-02997.WXS.T C3N-02997 PDA WXS tumor CPT0187880025 CPT0187880025.WholeExome.RP-1303.bam 52630614915 BAM NA 8648eac7-7167-49e3-bf28-c2c01f697f50 53bff600ca0127553ad2a8f43ae9a479 hg19 Primary Tumor C3N-02997-01 C3N-02997.WXS.T.CORE_M8JZn2A.core.high_cov C3N-02997 PDA WXS tumor CPT0187880023 CPT0187880023.WholeExome.RP-1303.bam 68430515342 BAM NA e2f3e9a7-4c76-491f-a733-9513f00e5b4a d5edc2c03b97ffa74d87c168a71a6a59 hg19 Primary Tumor C3N-02997-01 sample_tag=CORE_M8JZn2A local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-02997.WXS.T.CORE_M8JZn2A.hg38.core.high_cov C3N-02997 PDA WXS tumor CPT0187880023 50dedea3-c620-45ad-b9e5-bbb225fc23a2_wxs_gdc_realn.bam 94310236916 BAM NA d74a9a1a-62a2-4b30-b0d0-1447b9021fd2 dc7e708549f217d56c85dc598b54bf8d hg38 Primary Tumor C3N-02997-01 sample_tag=CORE_M8JZn2A local_meta=.core.high_cov Duplicate item: PDA Pilot - core-derived DNA C3N-02998.MethArray.Green.T C3N-02998 PDA Methylation Array tumor CPT0187930008 203561620077_R01C01_Grn.idat 13676214 IDAT Green a5983d0a-bf2a-40b1-94ec-790fc181ebb1 504df97e34fa8b23ed02197a7ceaa4a3 NA Primary Tumor C3N-02998-03 @@ -38524,6 +38541,8 @@ C3N-03785.WXS.N C3N-03785 HNSCC WXS blood_normal CPT0245720002 CPT0245720002.Who C3N-03785.WXS.N.hg38 C3N-03785 HNSCC WXS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wxs_gdc_realn.bam 34737306129 BAM NA 215dc24d-7f8b-4bb7-b7c2-4c25980ff0c0 9f66127233d88ca8ac2071c42f3a4501 hg38 Blood Derived Normal C3N-03785-31 C3N-03785.WXS.T C3N-03785 HNSCC WXS tumor CPT0245680006 CPT0245680006.WholeExome.RP-1303.bam 23064821578 BAM NA 9e7b5bab-8679-4354-9489-149e07df005d 04f7d520ced79614a1817896884a9b46 hg19 Primary Tumor C3N-03785-03 C3N-03785.WXS.T.hg38 C3N-03785 HNSCC WXS tumor CPT0245680006 58d9cb22-cc39-4db7-b889-647d69bed821_wxs_gdc_realn.bam 31718463963 BAM NA c93c4841-5d45-4476-b6a2-935ba9c20f82 34917359501902f86f17dc1cea7d97e5 hg38 Primary Tumor C3N-03785-03 +C3N-03788.MethArray.Green.T C3N-03788 GBM Methylation Array tumor CPT0457770011 206250290128_R07C01_Grn.idat 13677950 IDAT Green cc55834b-f2a3-4144-b0af-39170068fc1d 4b145b2cdf0df816b97155059d34b878 NA Primary Tumor C3N-03788-03 +C3N-03788.MethArray.Red.T C3N-03788 GBM Methylation Array tumor CPT0457770011 206250290128_R07C01_Red.idat 13677950 IDAT Red c88b0907-bfc3-42fb-81d1-b8f069fc9c85 7ac51ce78eaa54f0509518b40ca3d1c3 NA Primary Tumor C3N-03788-03 C3N-03788.miRNA-Seq.T C3N-03788 GBM miRNA-Seq tumor CPT0457770008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTCAGA_S8_L003_R1_001.unaln.bam 381775024 BAM NA df8726e2-4517-4a7a-bdaf-9289ab6ad3f5 3ecb5f14597b720c4de18afc61cf8f8a NA Primary Tumor C3N-03788-03 C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 NA Primary Tumor C3N-03789-05 C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 NA Primary Tumor C3N-03789-05