diff --git a/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat b/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat index 339271a..fd6d7a3 100644 --- a/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat +++ b/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat @@ -15,6 +15,66 @@ 11LU035 LUAD WGS_CNV_Somatic v2.0 20190121 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_CNV_Somatic.LUAD.all.hg38_v2.0_20190121/11LU035.gene_level.log2.seg.gz 296905 TSV 0d2d33acad6ceb9acb53867470e74b9d Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 SEG 11LU035 LUAD WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/11LU035.case.cnv.gz 4635 CNV c70e60577530a13215b9df39928929ce 11LU035.WGS.T.hg38 83b77360-ef94-43ea-9ac2-7229808e2512 11LU035.WGS.N.hg38 051bf441-b940-4e4b-95a9-86f8f892090c fcbb18af-14c7-416b-8c4c-1b8f5cad2ce0 11LU035 LUAD WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/11LU035.case.gene_level.log2.seg.gz 296539 SEG bac01ad6626a97b3aa55864e55898cd6 11LU035.WGS.T.hg38 83b77360-ef94-43ea-9ac2-7229808e2512 11LU035.WGS.N.hg38 051bf441-b940-4e4b-95a9-86f8f892090c fcbb18af-14c7-416b-8c4c-1b8f5cad2ce0 +C1230738 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1230738.ALQ_2b9c5101.case.cnv.gz 14393 CNV 5019ce34ec937b017f4b42a71168417e C1230738.WGS.T.hg38 4f59cd18-e160-40bc-b20f-d9b6d6b2a828 C1230738.WGS.N.hg38 91fdb084-280b-4301-a2dd-9ebd845f862c 8ee31d00-8137-4b2e-9405-652c823e27fb +C1230738 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1230738.ALQ_2b9c5101.case.gene_level.log2.seg.gz 300569 SEG c79f006856e7f374ffe46f50157bb3e0 C1230738.WGS.T.hg38 4f59cd18-e160-40bc-b20f-d9b6d6b2a828 C1230738.WGS.N.hg38 91fdb084-280b-4301-a2dd-9ebd845f862c 8ee31d00-8137-4b2e-9405-652c823e27fb +C1230738 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1230738.DUP_eb44394c.case.cnv.gz 25264 CNV d64e410167808fe8980e1e0df769ad79 C1230738.DUP_eb44394c.WGS.T.hg38 49344d55-2c3a-412b-910b-1faebfcea48d C1230738.WGS.N.hg38 91fdb084-280b-4301-a2dd-9ebd845f862c d2eabb4e-107f-4526-8b79-f3afe91da02c +C1230738 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1230738.DUP_eb44394c.case.gene_level.log2.seg.gz 304081 SEG 73eb53e1153c289661ecf7cdd36ddcbd C1230738.DUP_eb44394c.WGS.T.hg38 49344d55-2c3a-412b-910b-1faebfcea48d C1230738.WGS.N.hg38 91fdb084-280b-4301-a2dd-9ebd845f862c d2eabb4e-107f-4526-8b79-f3afe91da02c +C1245129 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1245129.ALQ_8f13fd02.case.cnv.gz 10537 CNV d4df1f0a05b2e6ef75632e5cc3053ce7 C1245129.WGS.T.hg38 c12354a1-3d98-4407-b4c3-17e3acf05bf4 C1245129.WGS.N.hg38 d016185e-cf6e-4b21-9841-554ef3d18e7a eea83c2b-1bc5-4bac-9584-8a5912f5512c +C1245129 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1245129.ALQ_8f13fd02.case.gene_level.log2.seg.gz 299272 SEG 593df5583dc7e36d7cfc555110dc58fd C1245129.WGS.T.hg38 c12354a1-3d98-4407-b4c3-17e3acf05bf4 C1245129.WGS.N.hg38 d016185e-cf6e-4b21-9841-554ef3d18e7a eea83c2b-1bc5-4bac-9584-8a5912f5512c +C1245129 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1245129.DUP_f4f0a623.case.cnv.gz 9227 CNV bc525766ba500dbb98175132b15b2e7c C1245129.DUP_f4f0a623.WGS.T.hg38 f3c78e93-c869-4b25-b43b-eb115a89b242 C1245129.WGS.N.hg38 d016185e-cf6e-4b21-9841-554ef3d18e7a 5b83ff7c-0cf1-416c-8137-7ab9ca9887a8 +C1245129 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C1245129.DUP_f4f0a623.case.gene_level.log2.seg.gz 298466 SEG 0d536b2751eba2adc85b7e7ea15ee237 C1245129.DUP_f4f0a623.WGS.T.hg38 f3c78e93-c869-4b25-b43b-eb115a89b242 C1245129.WGS.N.hg38 d016185e-cf6e-4b21-9841-554ef3d18e7a 5b83ff7c-0cf1-416c-8137-7ab9ca9887a8 +C204057 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C204057.ALQ_eb5da6ab.case.cnv.gz 9980 CNV 86c8bf82331acca00746f80a59e9ca60 C204057.WGS.T.hg38 f1b9b874-d882-4b5b-9573-0bae4430d09b C204057.WGS.N.hg38 355b4d9c-302a-4ac1-a27f-8f6c38ab51b1 0d55a543-0f70-4857-b05c-ab94a20c6ed3 +C204057 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C204057.ALQ_eb5da6ab.case.gene_level.log2.seg.gz 298161 SEG eed3be867b9983c20ced61e623245ccc C204057.WGS.T.hg38 f1b9b874-d882-4b5b-9573-0bae4430d09b C204057.WGS.N.hg38 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51b8c6a60ea23a215c754f208f615db8 C207624.DUP_8ab52100.WGS.T.hg38 4640f446-9179-43cd-b41c-5c5ef7251c59 C207624.WGS.N.hg38 60ee616b-34ea-4cb4-a7b9-ee547438873e ae9567a9-e181-41d8-bcff-df02399ecce3 +C207624 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C207624.case.gene_level.log2.seg.gz 304374 SEG 4a409900e283215b89bcf054c2a3c057 C207624.DUP_8ab52100.WGS.T.hg38 4640f446-9179-43cd-b41c-5c5ef7251c59 C207624.WGS.N.hg38 60ee616b-34ea-4cb4-a7b9-ee547438873e ae9567a9-e181-41d8-bcff-df02399ecce3 +C208854 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C208854.ALQ_92cbe1e0.case.cnv.gz 4065 CNV 0299a311cb4cdc2641a5d74b08233dcd C208854.WGS.T.hg38 36aac09f-30e3-4464-a20e-33c90605fe83 C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb fef3fdd8-1ce3-4ed4-b393-28ceedee5836 +C208854 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C208854.ALQ_92cbe1e0.case.gene_level.log2.seg.gz 296050 SEG d6e89b4cae997cc71824d235575c60e3 C208854.WGS.T.hg38 36aac09f-30e3-4464-a20e-33c90605fe83 C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb fef3fdd8-1ce3-4ed4-b393-28ceedee5836 +C208854 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C208854.DUP_15b44502.case.cnv.gz 5733 CNV 4421e4d103594b8cef3eb54ba1b68541 C208854.DUP_15b44502.WGS.T.hg38 ce084882-0179-4eff-8700-3f917d1a9f5f C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb 069cc2dc-93cf-4b8b-9989-227e3d33f094 +C208854 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C208854.DUP_15b44502.case.gene_level.log2.seg.gz 296932 SEG 5373f8e0c45b176ecb392c8fa7fbe1e7 C208854.DUP_15b44502.WGS.T.hg38 ce084882-0179-4eff-8700-3f917d1a9f5f C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb 069cc2dc-93cf-4b8b-9989-227e3d33f094 +C208854 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C208854.DUP_93ae1041.case.cnv.gz 3151 CNV 8d0e72a4856690aec74c84a30af9e37c C208854.DUP_93ae1041.WGS.T.hg38 a3290f46-6977-427f-8c5b-0f3f02d4e85f C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb 735d39ba-fbe2-4deb-9661-295f245aac41 +C208854 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C208854.DUP_93ae1041.case.gene_level.log2.seg.gz 295369 SEG 4cda27eb051ecdd6d126a05f40f67c0f C208854.DUP_93ae1041.WGS.T.hg38 a3290f46-6977-427f-8c5b-0f3f02d4e85f C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb 735d39ba-fbe2-4deb-9661-295f245aac41 +C217710 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C217710.case.cnv.gz 7188 CNV 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/CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C219555.case.gene_level.log2.seg.gz 302580 SEG 73a5a10ea46caabc616d3b8f377a2cbf C219555.WGS.T.hg38 6715f699-6a80-427d-b2c8-07a09f0682ca C219555.WGS.N.hg38 d2a01326-0fde-420b-8a11-23df57892a50 004cccd8-c2b2-4d8a-81b9-b8899629ac40 +C224106 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C224106.ALQ_65344b2f.case.cnv.gz 16476 CNV b08b4bbe0688fa8e3994453695ab8ca1 C224106.WGS.T.hg38 4b8621c8-b515-46b2-be8b-6ae003ea0291 C224106.WGS.N.hg38 27b129be-59e4-45b6-a760-37f62e4febe4 0bc2aada-a97e-4067-b09d-a1b53bc95553 +C224106 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C224106.ALQ_65344b2f.case.gene_level.log2.seg.gz 300245 SEG 7dee380bf38490742e1b9bc788d3da5f C224106.WGS.T.hg38 4b8621c8-b515-46b2-be8b-6ae003ea0291 C224106.WGS.N.hg38 27b129be-59e4-45b6-a760-37f62e4febe4 0bc2aada-a97e-4067-b09d-a1b53bc95553 +C224106 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C224106.DUP_4208c7cd.case.cnv.gz 13495 CNV a2a52ae9db31ce389004e7560d9839ee C224106.DUP_4208c7cd.WGS.T.hg38 0c382407-5002-43eb-832a-57e8a14d039e C224106.WGS.N.hg38 27b129be-59e4-45b6-a760-37f62e4febe4 923dbcb2-b3b3-4638-91ee-9a786f935b38 +C224106 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C224106.DUP_4208c7cd.case.gene_level.log2.seg.gz 298807 SEG 53e30923415d179fccc57874ba0d887c C224106.DUP_4208c7cd.WGS.T.hg38 0c382407-5002-43eb-832a-57e8a14d039e C224106.WGS.N.hg38 27b129be-59e4-45b6-a760-37f62e4febe4 923dbcb2-b3b3-4638-91ee-9a786f935b38 +C229764 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C229764.case.cnv.gz 11527 CNV 96c323f7b4241b5c0792899e49b5397f C229764.WGS.T.hg38 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/CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C2415597.case.gene_level.log2.seg.gz 303105 SEG 6c846c52b5f367f4090039738069fc2b C2415597.DUP_6b347d64.WGS.T.hg38 80a726e3-4517-48d1-ae34-183300dc3541 C2415597.WGS.N.hg38 81a1a51b-92a2-4934-b3c7-21d141f6e0c3 730dee50-278f-47d6-825a-ce97f83fc070 +C243048 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C243048.ALQ_744835e4.case.cnv.gz 11349 CNV c7e7b63679ba4d868378f178cda86ac6 C243048.WGS.T.hg38 e7f1591c-6ecb-4af1-a23d-5a38754f57b9 C243048.WGS.N.hg38 f5977d12-989d-4216-a674-474170a62e63 45ad6667-8f8a-4daf-8c7c-04857662ce45 +C243048 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C243048.ALQ_744835e4.case.gene_level.log2.seg.gz 299776 SEG 3722e70f842939372e8e8163ebf88ce0 C243048.WGS.T.hg38 e7f1591c-6ecb-4af1-a23d-5a38754f57b9 C243048.WGS.N.hg38 f5977d12-989d-4216-a674-474170a62e63 45ad6667-8f8a-4daf-8c7c-04857662ce45 +C243048 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C243048.DUP_94a7b89d.case.cnv.gz 11620 CNV eb0326c374b411c775b20e8974256734 C243048.DUP_94a7b89d.WGS.T.hg38 fc5d3bd7-69e2-435f-b278-290e6237aa47 C243048.WGS.N.hg38 f5977d12-989d-4216-a674-474170a62e63 c2c6a46c-8dc8-4523-95d9-dc450ab194b6 +C243048 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C243048.DUP_94a7b89d.case.gene_level.log2.seg.gz 298782 SEG 9d11c33a88f3fd6834e3b1eb1c286e0c C243048.DUP_94a7b89d.WGS.T.hg38 fc5d3bd7-69e2-435f-b278-290e6237aa47 C243048.WGS.N.hg38 f5977d12-989d-4216-a674-474170a62e63 c2c6a46c-8dc8-4523-95d9-dc450ab194b6 +C247230 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C247230.case.cnv.gz 6219 CNV c94931b9cd23f0a6328cb4955029e0ee C247230.DUP_aa190bd.WGS.T.hg38 a32f7c17-1eca-4dcd-92e8-f5b8068d72e7 C247230.WGS.N.hg38 af1de814-a89b-4044-9f65-925fe40aaf42 82e41838-8a83-401d-b35e-43ea9d38a90d +C247230 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C247230.case.gene_level.log2.seg.gz 297279 SEG 25931cbc7c118a8f6ee5085cc4ad5470 C247230.DUP_aa190bd.WGS.T.hg38 a32f7c17-1eca-4dcd-92e8-f5b8068d72e7 C247230.WGS.N.hg38 af1de814-a89b-4044-9f65-925fe40aaf42 82e41838-8a83-401d-b35e-43ea9d38a90d +C259161 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C259161.ALQ_97e7e164.case.cnv.gz 4647 CNV 63268f003cc67f340325738ccf462cc6 C259161.WGS.T.hg38 389e91a8-3b5c-4d4a-9e58-7f45e2698503 C259161.WGS.N.hg38 957eecd3-4344-4afa-9bf2-b2af7d954a5e 87bf0b59-304e-4ff1-8d02-d5f3d230ad94 +C259161 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C259161.ALQ_97e7e164.case.gene_level.log2.seg.gz 296105 SEG 4342979f29a0a0dd9ffa5926c4f5c3e7 C259161.WGS.T.hg38 389e91a8-3b5c-4d4a-9e58-7f45e2698503 C259161.WGS.N.hg38 957eecd3-4344-4afa-9bf2-b2af7d954a5e 87bf0b59-304e-4ff1-8d02-d5f3d230ad94 +C259161 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C259161.DUP_5c7e3295.case.cnv.gz 3336326 CNV 8e6ac6d6947d7be9c83634840b42e7af C259161.DUP_5c7e3295.WGS.T.hg38 88db0eef-aadc-4e7b-b6e9-20df18940bf3 C259161.WGS.N.hg38 957eecd3-4344-4afa-9bf2-b2af7d954a5e a251d1aa-6743-4f1f-95d1-0af87f5cbbf3 +C259161 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C259161.DUP_5c7e3295.case.gene_level.log2.seg.gz 438264 SEG f0f75882560217057e80df205efe7813 C259161.DUP_5c7e3295.WGS.T.hg38 88db0eef-aadc-4e7b-b6e9-20df18940bf3 C259161.WGS.N.hg38 957eecd3-4344-4afa-9bf2-b2af7d954a5e a251d1aa-6743-4f1f-95d1-0af87f5cbbf3 +C266664 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C266664.case.cnv.gz 86923 CNV 956f42d6c45758c63147906918e59f66 C266664.DUP_5dbc58a2.WGS.T.hg38 e04b8d09-5776-4725-b3f5-db58cd62f8f6 C266664.WGS.N.hg38 f92426ea-9a03-45c1-bece-4af8fc16d4b0 2cb5d9a7-9d7e-4107-b87a-0c2b2e663fb7 +C266664 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C266664.case.gene_level.log2.seg.gz 314673 SEG 207af93fe219c2bc7d3996eeedd7178e C266664.DUP_5dbc58a2.WGS.T.hg38 e04b8d09-5776-4725-b3f5-db58cd62f8f6 C266664.WGS.N.hg38 f92426ea-9a03-45c1-bece-4af8fc16d4b0 2cb5d9a7-9d7e-4107-b87a-0c2b2e663fb7 +C283515 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C283515.case.cnv.gz 4969 CNV 9a3d4071641cec6ddb4f4c577475d621 C283515.DUP_16970afa.WGS.T.hg38 f01f616f-baae-41c6-bc30-d7baa888fca2 C283515.WGS.N.hg38 64ff8172-9477-49e2-aab6-53ed112aa73c be547ca5-2d64-4f2b-a40c-341125d81e48 +C283515 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C283515.case.gene_level.log2.seg.gz 296383 SEG 24ca2acaf258db221a9819da5212d131 C283515.DUP_16970afa.WGS.T.hg38 f01f616f-baae-41c6-bc30-d7baa888fca2 C283515.WGS.N.hg38 64ff8172-9477-49e2-aab6-53ed112aa73c be547ca5-2d64-4f2b-a40c-341125d81e48 +C289419 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C289419.ALQ_24f84cd9.case.cnv.gz 13166 CNV cb6b55fdc990624f6a7b6104f6094650 C289419.WGS.T.hg38 66088cb3-52d4-4923-80d8-c9f6467076ab C289419.WGS.N.hg38 3206bc3b-648f-40f0-90d4-3914a2173ae6 6e30b21e-87bc-4643-b8e8-2534ba259445 +C289419 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C289419.ALQ_24f84cd9.case.gene_level.log2.seg.gz 298980 SEG 011bcc7f0bb8c23dc464a578e86bc535 C289419.WGS.T.hg38 66088cb3-52d4-4923-80d8-c9f6467076ab C289419.WGS.N.hg38 3206bc3b-648f-40f0-90d4-3914a2173ae6 6e30b21e-87bc-4643-b8e8-2534ba259445 +C289419 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C289419.DUP_ebf29e44.case.cnv.gz 33086 CNV 7eb6aec52c83b13d63a06819589f86a0 C289419.DUP_ebf29e44.WGS.T.hg38 87df8153-1621-45ef-84f6-475e6b344c45 C289419.WGS.N.hg38 3206bc3b-648f-40f0-90d4-3914a2173ae6 3afda00b-9ea4-490d-93ee-b1a1f2bae115 +C289419 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C289419.DUP_ebf29e44.case.gene_level.log2.seg.gz 305679 SEG d6374618ea454f3244bfd2796a572573 C289419.DUP_ebf29e44.WGS.T.hg38 87df8153-1621-45ef-84f6-475e6b344c45 C289419.WGS.N.hg38 3206bc3b-648f-40f0-90d4-3914a2173ae6 3afda00b-9ea4-490d-93ee-b1a1f2bae115 +C298152 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C298152.ALQ_7f0197e6.case.cnv.gz 12356 CNV 53b9a462cbaa602b1a32964015610b83 C298152.WGS.T.hg38 32e43bb8-4fb5-4435-99b0-f09f6f817dd0 C298152.WGS.N.hg38 d58f2823-1d0b-4d87-a8cf-60d3880cad66 c9790096-65a9-4d71-8b2e-2ca953ceea9c +C298152 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C298152.ALQ_7f0197e6.case.gene_level.log2.seg.gz 297572 SEG 560771a16f6fad544d6f351d8a74ea84 C298152.WGS.T.hg38 32e43bb8-4fb5-4435-99b0-f09f6f817dd0 C298152.WGS.N.hg38 d58f2823-1d0b-4d87-a8cf-60d3880cad66 c9790096-65a9-4d71-8b2e-2ca953ceea9c +C298152 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C298152.DUP_cb6d6363.case.cnv.gz 14165 CNV 505770ea02e6cbb0c746484375221c7b C298152.DUP_cb6d6363.WGS.T.hg38 fddc2fe2-8b91-4754-bf9c-cb63b03f66ae C298152.WGS.N.hg38 d58f2823-1d0b-4d87-a8cf-60d3880cad66 64656be8-2607-4f52-a3d0-1eba949aacf6 +C298152 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C298152.DUP_cb6d6363.case.gene_level.log2.seg.gz 298759 SEG 2bb23ac69e25357308d20e7b98541358 C298152.DUP_cb6d6363.WGS.T.hg38 fddc2fe2-8b91-4754-bf9c-cb63b03f66ae C298152.WGS.N.hg38 d58f2823-1d0b-4d87-a8cf-60d3880cad66 64656be8-2607-4f52-a3d0-1eba949aacf6 +C317832 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C317832.ALQ_5cfa9604.case.cnv.gz 5546 CNV ad9572bec509dba305e72fdd3c0892f5 C317832.WGS.T.hg38 6c345d12-741e-4e98-abfd-337cc774d958 C317832.WGS.N.hg38 0fa25367-cd71-4bee-a9ce-c0487935bf1a 476a1441-3c9d-4e26-8ff7-78feffde0c46 +C317832 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C317832.ALQ_5cfa9604.case.gene_level.log2.seg.gz 296849 SEG 502cd6ffd0c7206661c593ae49cb1174 C317832.WGS.T.hg38 6c345d12-741e-4e98-abfd-337cc774d958 C317832.WGS.N.hg38 0fa25367-cd71-4bee-a9ce-c0487935bf1a 476a1441-3c9d-4e26-8ff7-78feffde0c46 +C317832 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C317832.DUP_4b7f0398.case.cnv.gz 160748 CNV 392b684cb1f1504df371d9c12848b0cf C317832.DUP_4b7f0398.WGS.T.hg38 90d89778-ba90-4096-b585-894a2c7a81f2 C317832.WGS.N.hg38 0fa25367-cd71-4bee-a9ce-c0487935bf1a f329c35a-3fa8-40d1-8357-4939010139f8 +C317832 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C317832.DUP_4b7f0398.case.gene_level.log2.seg.gz 330370 SEG dca75a4c4057aca5cc847746dbb7dc56 C317832.DUP_4b7f0398.WGS.T.hg38 90d89778-ba90-4096-b585-894a2c7a81f2 C317832.WGS.N.hg38 0fa25367-cd71-4bee-a9ce-c0487935bf1a f329c35a-3fa8-40d1-8357-4939010139f8 +C330255 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C330255.case.cnv.gz 13587 CNV c5f46b932e91b02a968c3605a32c47bc C330255.WGS.T.hg38 e809e615-2a38-4ebb-bb20-51d162b52ce6 C330255.WGS.N.hg38 417d7c29-a3f8-4a79-b384-d053f4b7051f c85725ba-641f-4721-95a3-0a2c85b2c591 +C330255 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C330255.case.gene_level.log2.seg.gz 300880 SEG d60d7a14c55774c6ff64778101045ea2 C330255.WGS.T.hg38 e809e615-2a38-4ebb-bb20-51d162b52ce6 C330255.WGS.N.hg38 417d7c29-a3f8-4a79-b384-d053f4b7051f c85725ba-641f-4721-95a3-0a2c85b2c591 C3L-00001 LUAD WGS_CNV_Somatic v2.0 20190121 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_CNV_Somatic.LUAD.all.hg38_v2.0_20190121/C3L-00001.cnv 19881 TSV f068ae76e55f2289f190b95c149e76dc Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 CNV C3L-00001 LUAD WGS_CNV_Somatic v2.0 20190121 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_CNV_Somatic.LUAD.all.hg38_v2.0_20190121/C3L-00001.gene_level.log2.seg.gz 299410 TSV 764d4accec0dc6e0d1f9ad9535bee28f Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 SEG C3L-00001 LUAD WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-00001.WGS.T.hg38.case.cnv.gz 9716 CNV 13d10769dabc1e1e0baf37d774acfd4f C3L-00001.WGS.T.hg38 b919a0f4-c85d-4fe0-9947-2b8cb9b9a2b4 C3L-00001.WGS.N.hg38 1d301dc5-ebb2-47e0-9a9f-e31ed41b4542 16bf4251-d6b0-422c-8d33-d17a03d83b18 @@ -435,6 +495,8 @@ C3L-00610 CCRCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_C C3L-00610 CCRCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-00610.WGS.T.hg38.case.gene_level.log2.seg.gz 295301 SEG 771449ff91657daa285340683114e8fd C3L-00610.WGS.T.hg38 ae06cc02-91b4-420a-b04f-1e76954d1de0 C3L-00610.WGS.N.hg38 cf1f561b-bcc6-4e40-b09b-d57b1b9b6c70 504d1233-f7d1-4b6d-8640-4d48c89b4129 C3L-00614 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-00614.case.cnv.gz 11538 CNV 01273d54d35f0c2e7e8188507883b419 C3L-00614.WGS.Tpb.hg38 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 C3L-00614.WGS.Nbc.hg38 a8b1aad9-afac-494b-a513-91889fe8be96 f07de7ac-5120-4a31-9762-e016babfa859 C3L-00614 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-00614.case.gene_level.log2.seg.gz 299178 SEG 746c5183a7c3e91d9b0375dc06762a94 C3L-00614.WGS.Tpb.hg38 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 C3L-00614.WGS.Nbc.hg38 a8b1aad9-afac-494b-a513-91889fe8be96 f07de7ac-5120-4a31-9762-e016babfa859 +C3L-00617 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-00617.case.cnv.gz 355369 CNV 738bb0af13edbfcffe197b5a1d60b3cb C3L-00617.WGS.Tbm.hg38 98eaebef-92a8-4da4-96f8-21ef7564d427 C3L-00617.WGS.Nbc.hg38 4fe3fee3-b27e-4159-9dc8-088f09e974f5 0dc756b8-f004-4053-b8ec-c948b25764c5 +C3L-00617 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-00617.case.gene_level.log2.seg.gz 336083 SEG d0ebae7b8d2610dbec119c9b25aeb0b2 C3L-00617.WGS.Tbm.hg38 98eaebef-92a8-4da4-96f8-21ef7564d427 C3L-00617.WGS.Nbc.hg38 4fe3fee3-b27e-4159-9dc8-088f09e974f5 0dc756b8-f004-4053-b8ec-c948b25764c5 C3L-00622 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-00622.cnv.gz 3389 TSV c569bf606bff55184835f6bcafcf2905 C3L-00622.WGS.T.hg38 086ec943-b53a-4ccd-9594-bb20d5535f9b C3L-00622.WGS.N.hg38 286cd6a8-1673-4386-90d5-551bf89e2b6f CNV C3L-00622 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-00622.gene_level.log2.seg.gz 296192 TSV 6c51209b6fcc19154c5458bfa7bf77b8 C3L-00622.WGS.T.hg38 086ec943-b53a-4ccd-9594-bb20d5535f9b C3L-00622.WGS.N.hg38 286cd6a8-1673-4386-90d5-551bf89e2b6f SEG C3L-00622 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-00622.case.cnv.gz 3307 CNV 0c20caa839724262d24173c0c891cb3b C3L-00622.WGS.T.hg38 086ec943-b53a-4ccd-9594-bb20d5535f9b C3L-00622.WGS.N.hg38 286cd6a8-1673-4386-90d5-551bf89e2b6f ee7c5ad1-282e-45cc-8230-1d437d561ae7 @@ -869,6 +931,10 @@ C3L-01160 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_W C3L-01160 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-01160.gene_level.log2.seg.gz 296615 TSV e9cbeec641c0a85a132c06f092dc5aaf C3L-01160.WGS.T.hg38 05cb8a97-9225-4a2c-b9e4-048375f3478d C3L-01160.WGS.N.hg38 159ed349-6664-4f63-a807-2c0ec490012b SEG C3L-01160 PDA WGS_CNV_Somatic v2.5 20211015 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_SomaticCNV.batch_1021_20211015/C3L-01160.case.cnv.gz 5066 CNV b2bb24fdcbd11d2fd8e5940d6c9f743a C3L-01160.WGS.T.CORE_ERRmwz0.hg38.core 1000b82e-99a4-4743-90b4-625b6dc12984 C3L-01160.WGS.N.hg38 159ed349-6664-4f63-a807-2c0ec490012b 8d3727e3-8392-4e3e-b9cf-326ab91666c8 C3L-01160 PDA WGS_CNV_Somatic v2.5 20211015 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_SomaticCNV.batch_1021_20211015/C3L-01160.case.gene_level.log2.seg.gz 296868 SEG 29af9e260f01a3029830c0207e4ff097 C3L-01160.WGS.T.CORE_ERRmwz0.hg38.core 1000b82e-99a4-4743-90b4-625b6dc12984 C3L-01160.WGS.N.hg38 159ed349-6664-4f63-a807-2c0ec490012b 8d3727e3-8392-4e3e-b9cf-326ab91666c8 +C3L-01182 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01182.case.cnv.gz 142458 CNV 66480fc7d70c60ca626ff1540ad45f52 C3L-01182.WGS.Tpb.hg38 9203d3b3-eb05-4923-989d-1c8abb8a42ea C3L-01182.WGS.Nbc.hg38 d7132b30-16af-41cd-a0be-7ed4971b0d12 eb34e69e-adf6-448b-890a-2e6ddd87afba +C3L-01182 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01182.case.gene_level.log2.seg.gz 323544 SEG 6fa86ec6920f17064a33abed52735e24 C3L-01182.WGS.Tpb.hg38 9203d3b3-eb05-4923-989d-1c8abb8a42ea C3L-01182.WGS.Nbc.hg38 d7132b30-16af-41cd-a0be-7ed4971b0d12 eb34e69e-adf6-448b-890a-2e6ddd87afba +C3L-01188 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01188.case.cnv.gz 2362 CNV c56c7816a583a947617f2d137d1b2e85 C3L-01188.WGS.Tbm.hg38 443d5fcc-56db-4bb1-8765-0b2ae5399577 C3L-01188.WGS.Nbc.hg38 f50beef2-41e8-4cab-828a-3d2adc6d21eb 1a1e9566-f1c0-4f7f-9d16-0bbfc69da5b2 +C3L-01188 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01188.case.gene_level.log2.seg.gz 295277 SEG ba7ed6e4bf408a516a63edfe91e88c67 C3L-01188.WGS.Tbm.hg38 443d5fcc-56db-4bb1-8765-0b2ae5399577 C3L-01188.WGS.Nbc.hg38 f50beef2-41e8-4cab-828a-3d2adc6d21eb 1a1e9566-f1c0-4f7f-9d16-0bbfc69da5b2 C3L-01202 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-01202.case.cnv.gz 4833 CNV 99e59abd49c2b68d007629b180d3d6d0 C3L-01202.WGS.Tbm.hg38 c4e035b2-76ee-4d67-843d-1f18990e3bb1 C3L-01202.WGS.Nbc.hg38 dc06e74b-457a-466a-96eb-bae0b949c050 e2f2f58f-105a-458f-b732-d7cc743e63de C3L-01202 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-01202.case.gene_level.log2.seg.gz 296012 SEG cbb17bb274a25759251a67f601967c79 C3L-01202.WGS.Tbm.hg38 c4e035b2-76ee-4d67-843d-1f18990e3bb1 C3L-01202.WGS.Nbc.hg38 dc06e74b-457a-466a-96eb-bae0b949c050 e2f2f58f-105a-458f-b732-d7cc743e63de C3L-01205 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-01205.case.cnv.gz 289647 CNV aeeb1aea1c9cb96c27f888b161e5dff8 C3L-01205.WGS.Tbm.hg38 fadcb315-1cbc-498d-8835-f6828b2d3ee0 C3L-01205.WGS.Nbc.hg38 78af2650-07ba-4252-853f-22a0e4f310d5 dd00287f-d9e3-48d1-a5f0-e9b4c4905696 @@ -1021,6 +1087,12 @@ C3L-01355 UCEC WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/UCEC/CPTAC3_UCE C3L-01355 UCEC WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-01355.gene_level.log2.seg.gz 294594 TSV 089fc24214adaf0b07593b1096d7c08a C3L-01355.WGS.T.hg38 c6e73847-d928-4be5-9688-e38ae6742870 C3L-01355.WGS.N.hg38 c683c8b1-6683-46a0-b7a3-43c153a8ef5c SEG C3L-01355 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-01355.WGS.T.hg38.case.cnv.gz 149793 CNV 0d9b2bb2531816b8b8f5a5a5ec08c21f C3L-01355.WGS.T.hg38 c6e73847-d928-4be5-9688-e38ae6742870 C3L-01355.WGS.N.hg38 c683c8b1-6683-46a0-b7a3-43c153a8ef5c 44c950c2-8f73-4841-b986-c47a67fd6493 C3L-01355 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-01355.WGS.T.hg38.case.gene_level.log2.seg.gz 331515 SEG e10583edd5ae44b9887256fd51babbf8 C3L-01355.WGS.T.hg38 c6e73847-d928-4be5-9688-e38ae6742870 C3L-01355.WGS.N.hg38 c683c8b1-6683-46a0-b7a3-43c153a8ef5c 44c950c2-8f73-4841-b986-c47a67fd6493 +C3L-01425 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01425.case.cnv.gz 1280711 CNV 960028d9d1a64ce22be1119276b61317 C3L-01425.WGS.Tbm.hg38 3634e8ee-419e-422b-a492-b63f07b3840a C3L-01425.WGS.Nbc.hg38 3289b16b-0383-4ece-914c-5ae5fa903955 18c26805-6385-4a80-8fbd-c7bca6169fd0 +C3L-01425 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01425.case.gene_level.log2.seg.gz 370039 SEG f616d8cc185cfbea6619793a442c00fa C3L-01425.WGS.Tbm.hg38 3634e8ee-419e-422b-a492-b63f07b3840a C3L-01425.WGS.Nbc.hg38 3289b16b-0383-4ece-914c-5ae5fa903955 18c26805-6385-4a80-8fbd-c7bca6169fd0 +C3L-01426 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01426.case.cnv.gz 13159 CNV 096563957c15119a73a32367f3af864d C3L-01426.WGS.Tpb.hg38 600534ec-3fd0-420d-9d39-45bf59abea96 C3L-01426.WGS.Nbc.hg38 d6162a5c-7200-4643-ad34-2f17276ad642 dae1a49b-759e-4b6f-9090-d4591ce8eccc +C3L-01426 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01426.case.gene_level.log2.seg.gz 300092 SEG 3efe593a64eb05035d3b05f7b80fd828 C3L-01426.WGS.Tpb.hg38 600534ec-3fd0-420d-9d39-45bf59abea96 C3L-01426.WGS.Nbc.hg38 d6162a5c-7200-4643-ad34-2f17276ad642 dae1a49b-759e-4b6f-9090-d4591ce8eccc +C3L-01427 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01427.case.cnv.gz 42780 CNV 835af1084be6a422828275451700f293 C3L-01427.WGS.Tpb.hg38 4e6e8a93-e0e6-4259-9227-345d4526b521 C3L-01427.WGS.Nbc.hg38 769c53ae-858c-4c6f-b0b5-4733b5d3be14 691d9f52-7870-40ef-9ad8-5f0a4db40087 +C3L-01427 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01427.case.gene_level.log2.seg.gz 309653 SEG bac79a64cf73564f100b6af4597f5c78 C3L-01427.WGS.Tpb.hg38 4e6e8a93-e0e6-4259-9227-345d4526b521 C3L-01427.WGS.Nbc.hg38 769c53ae-858c-4c6f-b0b5-4733b5d3be14 691d9f52-7870-40ef-9ad8-5f0a4db40087 C3L-01453 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-01453.cnv.gz 3516 TSV 293030f71124762a160c04ff1335428e C3L-01453.WGS.T.hg38 18f0a656-615a-417e-92b1-953fbfd4afd6 C3L-01453.WGS.N.hg38 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d CNV C3L-01453 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-01453.gene_level.log2.seg.gz 295676 TSV 7f4dca579ab63ed6f9a4b340b9022883 C3L-01453.WGS.T.hg38 18f0a656-615a-417e-92b1-953fbfd4afd6 C3L-01453.WGS.N.hg38 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d SEG C3L-01453 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-01453.case.cnv.gz 3439 CNV c91ca7739564a6f2965bffd76f6c4973 C3L-01453.WGS.T.DEEP_rxJo3W.hg38 18f0a656-615a-417e-92b1-953fbfd4afd6 C3L-01453.WGS.N.hg38 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d 300deb23-d835-4167-804c-0ce92f0fcc0f @@ -1183,6 +1255,8 @@ C3L-01689 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_W C3L-01689 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-01689.gene_level.log2.seg.gz 296110 TSV da34586064c11ddd23d821f859bd126e C3L-01689.WGS.T.hg38 7e8efdd4-7fad-4e46-aa74-5e1bf4b2f149 C3L-01689.WGS.N.hg38 e39d2edb-7a85-49c1-bafd-9ed460b73941 SEG C3L-01689 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-01689.case.cnv.gz 3452 CNV 3a22680968e46016c157570e5d601db4 C3L-01689.WGS.T.DEEP_v6DZXg.hg38 7e8efdd4-7fad-4e46-aa74-5e1bf4b2f149 C3L-01689.WGS.N.hg38 e39d2edb-7a85-49c1-bafd-9ed460b73941 f414feb8-7283-4aee-92f8-89682999f898 C3L-01689 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-01689.case.gene_level.log2.seg.gz 296289 SEG 5a4ed22de7c78194d326413de66d0bf4 C3L-01689.WGS.T.DEEP_v6DZXg.hg38 7e8efdd4-7fad-4e46-aa74-5e1bf4b2f149 C3L-01689.WGS.N.hg38 e39d2edb-7a85-49c1-bafd-9ed460b73941 f414feb8-7283-4aee-92f8-89682999f898 +C3L-01694 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01694.case.cnv.gz 9591 CNV a687570b956141f83686b200235681c3 C3L-01694.WGS.Tpb.hg38 98a43f31-aa70-4a90-aad4-4f12a5fad7ab C3L-01694.WGS.Nbc.hg38 f0e9d729-028a-44d1-938a-8c48e13b96da cec1d170-c597-4f7b-b383-c99023008acb +C3L-01694 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-01694.case.gene_level.log2.seg.gz 298600 SEG b14eea4b88d4d858874bd2dc73063e3b C3L-01694.WGS.Tpb.hg38 98a43f31-aa70-4a90-aad4-4f12a5fad7ab C3L-01694.WGS.Nbc.hg38 f0e9d729-028a-44d1-938a-8c48e13b96da cec1d170-c597-4f7b-b383-c99023008acb C3L-01700 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-01700.case.cnv.gz 1808 CNV 89741054533c0c2b22406f3191cc262d C3L-01700.WGS.Tbm.hg38 b0dc159d-ba72-46f7-a292-b64202b41de3 C3L-01700.WGS.Nbc.hg38 c9ca3855-56ab-43b4-94ba-b9be6a3bba97 2be5d7ce-0452-4380-988d-b9560a48c2c9 C3L-01700 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-01700.case.gene_level.log2.seg.gz 294838 SEG a79571d54bc15f7b2261fc163540a323 C3L-01700.WGS.Tbm.hg38 b0dc159d-ba72-46f7-a292-b64202b41de3 C3L-01700.WGS.Nbc.hg38 c9ca3855-56ab-43b4-94ba-b9be6a3bba97 2be5d7ce-0452-4380-988d-b9560a48c2c9 C3L-01702 PDA WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-01702.cnv.gz 1864 TSV 8cde595edb33cf8b62bcc38f65ad73e1 C3L-01702.WGS.T.hg38 07e5550b-cc74-4209-a752-5ca156d2362a C3L-01702.WGS.N.hg38 f10fc8b4-5c83-4b4a-a27c-4f42bb53aff5 CNV @@ -1769,6 +1843,8 @@ C3L-02747 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCE C3L-02747 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-02747.C3L-02747.gene_level.log2.seg.gz 294401 TSV ca62417a4630d9c38f0485205f7f5fb0 C3L-02747.WGS.T.hg38 1894bbde-fb66-4ab5-9676-95a28fb8225b C3L-02747.WGS.N.hg38 ca6433d5-5901-4360-a0cc-be3613506b88 SEG C3L-02747 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-02747.WGS.T.hg38.case.cnv.gz 1649 CNV f0de91ca6b4a4a1df2010b708164a300 C3L-02747.WGS.T.hg38 1894bbde-fb66-4ab5-9676-95a28fb8225b C3L-02747.WGS.N.hg38 ca6433d5-5901-4360-a0cc-be3613506b88 58162bbd-3869-4e89-a881-ead2bdd71f75 C3L-02747 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-02747.WGS.T.hg38.case.gene_level.log2.seg.gz 294697 SEG 0aed9300ad40b0eacc24b075d7bc8599 C3L-02747.WGS.T.hg38 1894bbde-fb66-4ab5-9676-95a28fb8225b C3L-02747.WGS.N.hg38 ca6433d5-5901-4360-a0cc-be3613506b88 58162bbd-3869-4e89-a881-ead2bdd71f75 +C3L-02779 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-02779.case.cnv.gz 21112 CNV 4122ebd7070edb8d91418c35461b510b C3L-02779.WGS.Tpb.hg38 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e C3L-02779.WGS.Nbc.hg38 15c037cc-7c13-4563-aebd-cf963b3cb3e8 87244bc3-d8b6-4469-afe8-f8d2a772d49d +C3L-02779 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-02779.case.gene_level.log2.seg.gz 303474 SEG 3fab9b7300ff55d696c19b70f5b9bfe5 C3L-02779.WGS.Tpb.hg38 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e C3L-02779.WGS.Nbc.hg38 15c037cc-7c13-4563-aebd-cf963b3cb3e8 87244bc3-d8b6-4469-afe8-f8d2a772d49d C3L-02800 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-02800.C3L-02800.cnv.gz 1945 TSV ebd58907b0328e535645ba9a0065c2aa C3L-02800.WGS.T.hg38 3017d721-58f9-4818-b2cc-4a25a5869caa C3L-02800.WGS.N.hg38 0f97e2fd-22e2-4ae6-9129-26647af4cb04 CNV C3L-02800 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-02800.C3L-02800.gene_level.log2.seg.gz 294841 TSV 2c480db5ea2db3ae877aed1666f8352c C3L-02800.WGS.T.hg38 3017d721-58f9-4818-b2cc-4a25a5869caa C3L-02800.WGS.N.hg38 0f97e2fd-22e2-4ae6-9129-26647af4cb04 SEG C3L-02800 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-02800.WGS.T.hg38.case.cnv.gz 1856 CNV ba1452a75a7a330fd14ab43826de940a C3L-02800.WGS.T.hg38 3017d721-58f9-4818-b2cc-4a25a5869caa C3L-02800.WGS.N.hg38 0f97e2fd-22e2-4ae6-9129-26647af4cb04 5b6c0efd-aba1-4c83-9469-aaf966fa429f @@ -1911,6 +1987,8 @@ C3L-03272 LSCC WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSC C3L-03272 LSCC WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3L-03272.gene_level.log2.seg.gz 347126 TSV 4def10bf0dea04a358214ece0fe9f177 C3L-03272.WGS.T.hg38 72f758cf-917a-4a95-b714-d422e6c58128 C3L-03272.WGS.N.hg38 34b966ea-7310-4aad-ab2f-3abbff502e84 SEG C3L-03272 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-03272.WGS.T.hg38.case.cnv.gz 1014926 CNV 529e5ae47217d1e9192c5d0454d7bfef C3L-03272.WGS.T.hg38 72f758cf-917a-4a95-b714-d422e6c58128 C3L-03272.WGS.N.hg38 34b966ea-7310-4aad-ab2f-3abbff502e84 77b9768c-fb25-48ee-8a82-c93902f41cb1 C3L-03272 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-03272.WGS.T.hg38.case.gene_level.log2.seg.gz 347249 SEG 63f9ed7c724615c9bd620aeaa7653d1c C3L-03272.WGS.T.hg38 72f758cf-917a-4a95-b714-d422e6c58128 C3L-03272.WGS.N.hg38 34b966ea-7310-4aad-ab2f-3abbff502e84 77b9768c-fb25-48ee-8a82-c93902f41cb1 +C3L-03303 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03303.case.cnv.gz 114269 CNV 4bf6f2733a5baf0696a1bfcb8cb44d0c C3L-03303.WGS.Tpb.hg38 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 C3L-03303.WGS.Nbc.hg38 5d5ffeab-8fde-4425-b4c2-709184c3574e e0db4bf8-e63f-4763-85c7-1877c98c588a +C3L-03303 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03303.case.gene_level.log2.seg.gz 324029 SEG 8e3853c32ef8079e6be5cd54ac49840b C3L-03303.WGS.Tpb.hg38 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 C3L-03303.WGS.Nbc.hg38 5d5ffeab-8fde-4425-b4c2-709184c3574e e0db4bf8-e63f-4763-85c7-1877c98c588a C3L-03350 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-03350.cnv.gz 5875 TSV 36a747487787b034c1b1c71a9e1ecef1 C3L-03350.WGS.T.hg38 3ba0ce7c-be58-4b50-a682-a89f95bc13b0 C3L-03350.WGS.N.hg38 3aff18dc-c927-4f39-a5f2-e43fbc2a92e8 CNV C3L-03350 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-03350.gene_level.log2.seg.gz 298235 TSV 9b77fe0881955597d4e75c2da3949440 C3L-03350.WGS.T.hg38 3ba0ce7c-be58-4b50-a682-a89f95bc13b0 C3L-03350.WGS.N.hg38 3aff18dc-c927-4f39-a5f2-e43fbc2a92e8 SEG C3L-03356 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-03356.cnv.gz 3573 TSV 7cb7ebddabef0565ba1010485af0282e C3L-03356.WGS.T.hg38 2e61e2f8-19c0-46b4-b4d0-226140c1589c C3L-03356.WGS.N.hg38 4197a5e2-b184-43c5-a01d-01f22cf89d7c CNV @@ -1975,6 +2053,12 @@ C3L-03493 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_W C3L-03493 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-03493.case.gene_level.log2.seg.gz 295190 SEG 10e7e0a55852e5e113110766238f8d87 C3L-03493.WGS.Tbm.hg38 690c7e00-d487-4d12-973f-7a0fa1e94eb4 C3L-03493.WGS.Nbc.hg38 a76f4c04-d156-48ae-a49e-59200fbe2315 4c2768b1-3de1-4013-bbda-0a55d3c2434a C3L-03496 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-03496.case.cnv.gz 3580 CNV a0f829c2181c8d2e4c31b1692aa2770d C3L-03496.WGS.Tbm.hg38 3b7cb468-6327-4090-a75e-d332304d6a51 C3L-03496.WGS.Nbc.hg38 e28d6175-4ee7-497c-a49d-712b85f10815 70eea684-c233-42b4-afc2-053e436c2d98 C3L-03496 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-03496.case.gene_level.log2.seg.gz 295009 SEG 00ae58614640c7516f8892b81b59ea7f C3L-03496.WGS.Tbm.hg38 3b7cb468-6327-4090-a75e-d332304d6a51 C3L-03496.WGS.Nbc.hg38 e28d6175-4ee7-497c-a49d-712b85f10815 70eea684-c233-42b4-afc2-053e436c2d98 +C3L-03506 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03506.case.cnv.gz 43840 CNV 541086b8bdb60258cbfdcf911a0209af C3L-03506.WGS.Tbm.hg38 e588d3ea-e49d-436d-ba8d-3078d662beeb C3L-03506.WGS.Nbc.hg38 0e01c3e7-f302-4e40-84fa-39093f664511 cb17a2a9-f678-460c-a033-12cc4650abb8 +C3L-03506 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03506.case.gene_level.log2.seg.gz 305361 SEG 6fb6762ce78279dc67913c2d597acfda C3L-03506.WGS.Tbm.hg38 e588d3ea-e49d-436d-ba8d-3078d662beeb C3L-03506.WGS.Nbc.hg38 0e01c3e7-f302-4e40-84fa-39093f664511 cb17a2a9-f678-460c-a033-12cc4650abb8 +C3L-03508 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03508.case.cnv.gz 29135 CNV ff4b63076b350cf389ef46fa5e34b32d C3L-03508.WGS.Tbm.hg38 eb2d66d8-1b52-4fa6-9732-902cab19da2b C3L-03508.WGS.Nbc.hg38 931985c6-ced7-4c82-b2ef-ed40d574818f 56edd1ee-0d6e-4859-b1ee-e87053e87042 +C3L-03508 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03508.case.gene_level.log2.seg.gz 303004 SEG 8f8d5fa40bca5294da63f61754bfe9cd C3L-03508.WGS.Tbm.hg38 eb2d66d8-1b52-4fa6-9732-902cab19da2b C3L-03508.WGS.Nbc.hg38 931985c6-ced7-4c82-b2ef-ed40d574818f 56edd1ee-0d6e-4859-b1ee-e87053e87042 +C3L-03510 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03510.case.cnv.gz 15720 CNV 4209d2b0c9ec09d4ed43c1e4119d0ca7 C3L-03510.WGS.Tbm.hg38 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 C3L-03510.WGS.Nbc.hg38 f800b205-92ba-4e0d-90bf-71788445fa57 5c12b5e1-7b3d-4167-a5f1-a6baf50982cb +C3L-03510 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-03510.case.gene_level.log2.seg.gz 301029 SEG 9a9fd50d9155e25fb2d366a70f88c76b C3L-03510.WGS.Tbm.hg38 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 C3L-03510.WGS.Nbc.hg38 f800b205-92ba-4e0d-90bf-71788445fa57 5c12b5e1-7b3d-4167-a5f1-a6baf50982cb C3L-03589 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-03589.C3L-03589.cnv.gz 3124 TSV 39074d85a253056f5c87c98473992b9e C3L-03589.WGS.T.hg38 558d49c6-bca4-415d-b337-421423306c9c C3L-03589.WGS.N.hg38 bd6b2826-154e-4b74-a395-7fadc4650c7c CNV C3L-03589 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-03589.C3L-03589.gene_level.log2.seg.gz 295807 TSV a84fbcf742ea247dde619c9aa0817042 C3L-03589.WGS.T.hg38 558d49c6-bca4-415d-b337-421423306c9c C3L-03589.WGS.N.hg38 bd6b2826-154e-4b74-a395-7fadc4650c7c SEG C3L-03589 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-03589.WGS.T.hg38.case.cnv.gz 4108 CNV 7f1fc1774bc77255b9d5abe31c2a8c7a C3L-03589.WGS.T.hg38 558d49c6-bca4-415d-b337-421423306c9c C3L-03589.WGS.N.hg38 bd6b2826-154e-4b74-a395-7fadc4650c7c 1c956a09-5cb9-495f-a0e5-2ca89d3e502a @@ -2123,6 +2207,8 @@ C3L-04080 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_W C3L-04080 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04080.gene_level.log2.seg.gz 301448 TSV 72ae74de8d1d88c7a9a6dc4567e26b74 C3L-04080.WGS.T.hg38 fd0a5edf-f331-4563-818d-060962d79803 C3L-04080.WGS.N.hg38 68ab3e9a-bd37-44be-8133-99d381095699 SEG C3L-04080 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-04080.case.cnv.gz 8725 CNV c02cdb3f47c330d6047d9934d3de27fc C3L-04080.WGS.T.hg38 fd0a5edf-f331-4563-818d-060962d79803 C3L-04080.WGS.N.hg38 68ab3e9a-bd37-44be-8133-99d381095699 d472244b-6770-4439-8d1b-58a669c7f0ca C3L-04080 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-04080.case.gene_level.log2.seg.gz 299561 SEG 7d280c18b7b16ef3015701927d5df684 C3L-04080.WGS.T.hg38 fd0a5edf-f331-4563-818d-060962d79803 C3L-04080.WGS.N.hg38 68ab3e9a-bd37-44be-8133-99d381095699 d472244b-6770-4439-8d1b-58a669c7f0ca +C3L-04081 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04081.case.cnv.gz 6032 CNV ae912fb2a69dd5c318e7ffd166de143b C3L-04081.WGS.T.hg38 c8e3e5a9-2798-4125-a0f8-a84d2d5bb653 C3L-04081.WGS.N.hg38 4ad311e9-01c5-464a-8d6c-40f40c331c19 106cc077-9f6f-44aa-8dfc-bec16465f917 +C3L-04081 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04081.case.gene_level.log2.seg.gz 296929 SEG fe60844100b54bea66703914063a413b C3L-04081.WGS.T.hg38 c8e3e5a9-2798-4125-a0f8-a84d2d5bb653 C3L-04081.WGS.N.hg38 4ad311e9-01c5-464a-8d6c-40f40c331c19 106cc077-9f6f-44aa-8dfc-bec16465f917 C3L-04082 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04082.WGS.T.hg38.case.cnv.gz 10070 CNV 76967260dc86a003adde5d559bb5cc7d C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 0b461cbc-6ab7-4f92-85b8-f0c19d8669fd C3L-04082 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04082.WGS.T.hg38.case.gene_level.log2.seg.gz 298789 SEG 9ec823be3cf24f842dfc01aa1359cbb6 C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 0b461cbc-6ab7-4f92-85b8-f0c19d8669fd C3L-04083 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04083.WGS.T.hg38.case.cnv.gz 71851 CNV 49f69f08c3f82b2a69524e177845b4cb C3L-04083.WGS.T.hg38 a76bbc4e-73d6-452c-8993-b8b3c830587b C3L-04083.WGS.N.hg38 8f0a473f-e05f-4b30-988f-a4456e458e19 34e840a4-e7d3-4948-96f2-d9179a9e6bc4 @@ -2139,6 +2225,10 @@ C3L-04213 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_W C3L-04213 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04213.WGS.T.hg38.case.gene_level.log2.seg.gz 299934 SEG eef12ef589133eb1174237c2b602d396 C3L-04213.WGS.T.hg38 bb4472a3-b931-436b-a6f2-028f0e236229 C3L-04213.WGS.N.hg38 e4a20d36-782a-4b14-a985-15b48497ff4e 3f411521-bde6-4be6-939c-1f1535e10cfc C3L-04216 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04216.WGS.T.hg38.case.cnv.gz 9160 CNV 2e36a3c0eee770a0782ff4e9a2e1c569 C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 df62d379-798c-4bad-890b-cc4636d3af41 C3L-04216 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04216.WGS.T.hg38.case.gene_level.log2.seg.gz 299290 SEG 603351d7c3e95d3272d7f946a90301ee C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 df62d379-798c-4bad-890b-cc4636d3af41 +C3L-04231 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04231.case.cnv.gz 22529 CNV 6a550939643f2ee54f1c2a6b37781688 C3L-04231.WGS.Tbm.hg38 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c C3L-04231.WGS.Nbc.hg38 529ad08a-dedd-4191-abe7-f747e9306138 f10171f1-a817-48e5-b41a-cd0d399c2d29 +C3L-04231 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04231.case.gene_level.log2.seg.gz 303181 SEG 5b33111e956b55a7856c4a8b856a9a40 C3L-04231.WGS.Tbm.hg38 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c C3L-04231.WGS.Nbc.hg38 529ad08a-dedd-4191-abe7-f747e9306138 f10171f1-a817-48e5-b41a-cd0d399c2d29 +C3L-04236 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04236.case.cnv.gz 22042 CNV b8286bddfedc3c08e1f75b9eec33a022 C3L-04236.WGS.Tbm.hg38 88ec4690-af60-4ef8-970e-324e05ed6101 C3L-04236.WGS.Nbc.hg38 fd22f225-d998-47b7-894b-79a9d7ac4109 67a813aa-b1b8-4b0c-8898-f08e0660bef5 +C3L-04236 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04236.case.gene_level.log2.seg.gz 303534 SEG a7c62af1a59cf9cd564a001a94ba69d8 C3L-04236.WGS.Tbm.hg38 88ec4690-af60-4ef8-970e-324e05ed6101 C3L-04236.WGS.Nbc.hg38 fd22f225-d998-47b7-894b-79a9d7ac4109 67a813aa-b1b8-4b0c-8898-f08e0660bef5 C3L-04241 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04241.case.cnv.gz 16065 CNV 5897b3bb43b5ea42cbab3030c184a35a C3L-04241.WGS.Tbm.hg38 f8b81384-68cc-4fac-93d9-1ce01c490390 C3L-04241.WGS.Nbc.hg38 70432235-b33a-4105-85d6-fc7d029cf3bd c4c368f7-b9f3-42af-a263-cc83931b1680 C3L-04241 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04241.case.gene_level.log2.seg.gz 297510 SEG 4ae8fda6230857aadfba55dc73ae49a9 C3L-04241.WGS.Tbm.hg38 f8b81384-68cc-4fac-93d9-1ce01c490390 C3L-04241.WGS.Nbc.hg38 70432235-b33a-4105-85d6-fc7d029cf3bd c4c368f7-b9f3-42af-a263-cc83931b1680 C3L-04242 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04242.case.cnv.gz 1939 CNV 2ea58b767473c6931a2cc88218b37fd1 C3L-04242.WGS.Tbm.hg38 95aa6faf-55af-4f6b-b01d-260bb025fec7 C3L-04242.WGS.Nbc.hg38 716018d2-bee2-43e5-9184-12dba57c70a6 ce5b9f09-0489-4bd8-b3dd-2af5e00c7f63 @@ -2147,8 +2237,12 @@ C3L-04245 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_W C3L-04245 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04245.case.gene_level.log2.seg.gz 297673 SEG 3d1f4ce80349b489cd8773dd80165f99 C3L-04245.WGS.Tbm.hg38 419cf2fb-18cd-4a3e-90b5-2dd8ef7ac714 C3L-04245.WGS.Nbc.hg38 9a88768d-4af8-464d-ad42-eb8a9ae6b7af 2e8dc4e7-aafa-4acd-9c32-59608317204c C3L-04250 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04250.case.cnv.gz 5299 CNV d73b4cf1611ca46fda7d914a3496d63a C3L-04250.WGS.Tbm.hg38 539b6614-4424-4a68-8462-e3ab2867246e C3L-04250.WGS.Nbc.hg38 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 b10d1be6-4590-404a-a0f7-e49c288d8ddd C3L-04250 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04250.case.gene_level.log2.seg.gz 295644 SEG 20651f650840e00a7a195e389da962fe C3L-04250.WGS.Tbm.hg38 539b6614-4424-4a68-8462-e3ab2867246e C3L-04250.WGS.Nbc.hg38 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 b10d1be6-4590-404a-a0f7-e49c288d8ddd +C3L-04263 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04263.case.cnv.gz 12560 CNV 3bb3ce46cbce1e1f299bc8f4ecf8ba84 C3L-04263.WGS.Tbm.hg38 fdae0859-8401-4b76-8d57-bb6607a778c8 C3L-04263.WGS.Nbc.hg38 142d091a-aba1-4173-8c45-567d7ce4ee7f 3d451477-f683-4756-bf25-3942744f2c1b +C3L-04263 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04263.case.gene_level.log2.seg.gz 299621 SEG eebbd87aa7f80d86b2310e2ee6069fc9 C3L-04263.WGS.Tbm.hg38 fdae0859-8401-4b76-8d57-bb6607a778c8 C3L-04263.WGS.Nbc.hg38 142d091a-aba1-4173-8c45-567d7ce4ee7f 3d451477-f683-4756-bf25-3942744f2c1b C3L-04265 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04265.case.cnv.gz 5640 CNV f78e839045c313a7c4e548eedac024a7 C3L-04265.WGS.Tbm.hg38 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 C3L-04265.WGS.Nbc.hg38 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 eb728aa7-fcc4-438b-80cd-5d5b9e397b31 C3L-04265 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04265.case.gene_level.log2.seg.gz 296875 SEG 0aec5470d0fed7ca7260949fce3f37f2 C3L-04265.WGS.Tbm.hg38 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 C3L-04265.WGS.Nbc.hg38 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 eb728aa7-fcc4-438b-80cd-5d5b9e397b31 +C3L-04270 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04270.case.cnv.gz 10153 CNV 815351e04c540883b37fbecf557a83b7 C3L-04270.WGS.Tbm.hg38 a382bf00-ff44-4937-98ed-fc56b0596db2 C3L-04270.WGS.Nbc.hg38 75406c0c-b54e-40da-8d71-7aebffc242d0 2797c072-2665-46b2-a66b-eb4415652e89 +C3L-04270 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04270.case.gene_level.log2.seg.gz 299144 SEG 5c57ab139a265c54591e58f5a286256c C3L-04270.WGS.Tbm.hg38 a382bf00-ff44-4937-98ed-fc56b0596db2 C3L-04270.WGS.Nbc.hg38 75406c0c-b54e-40da-8d71-7aebffc242d0 2797c072-2665-46b2-a66b-eb4415652e89 C3L-04336 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04336.WGS.T.hg38.case.cnv.gz 15066 CNV 81d467da1bcda4fdb23dc8c967f74180 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae d1941d4c-2d98-4797-b4e1-348751755f2c C3L-04336 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04336.WGS.T.hg38.case.gene_level.log2.seg.gz 301797 SEG 1d921eab05ac680aef7694852b7048f7 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae d1941d4c-2d98-4797-b4e1-348751755f2c C3L-04339 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04339.WGS.T.hg38.case.cnv.gz 10127 CNV 3c6978ea18dcd448b8aa1474b39d9a2e C3L-04339.WGS.T.hg38 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 C3L-04339.WGS.N.hg38 a78992b6-5d44-4e49-ba64-f99c06d9700e 0d79807a-d082-4c05-b8ca-5d43c8f5e4da @@ -2199,6 +2293,12 @@ C3L-04479 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_W C3L-04479 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04479.gene_level.log2.seg.gz 295788 TSV 119dfc10166d86d87e46274285f4a41d C3L-04479.WGS.T.hg38 d193537d-6e11-4a26-bfee-72399c8099fc C3L-04479.WGS.N.hg38 3f8032aa-b17d-408e-b800-fb1716196c0d SEG C3L-04479 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-04479.case.cnv.gz 3512 CNV ed12229cae262624bd6bf3f130dc8a27 C3L-04479.WGS.T.hg38 d193537d-6e11-4a26-bfee-72399c8099fc C3L-04479.WGS.N.hg38 3f8032aa-b17d-408e-b800-fb1716196c0d b23bca07-5b43-4b7c-95a4-b9aa2bee0c62 C3L-04479 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-04479.case.gene_level.log2.seg.gz 296120 SEG 2ec2c21d896dae17587d4c8b3f49485f C3L-04479.WGS.T.hg38 d193537d-6e11-4a26-bfee-72399c8099fc C3L-04479.WGS.N.hg38 3f8032aa-b17d-408e-b800-fb1716196c0d b23bca07-5b43-4b7c-95a4-b9aa2bee0c62 +C3L-04483 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04483.case.cnv.gz 21155 CNV 58face0cff9a28081b6cde419ca915fa C3L-04483.WGS.Tbm.hg38 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 C3L-04483.WGS.Nbc.hg38 708e41fa-402b-44c6-8464-85e884efcdf0 ade6b7ba-c37d-4883-b175-df7eb99cb12a +C3L-04483 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04483.case.gene_level.log2.seg.gz 299227 SEG 30aa09b4e39e78dea244f9ae3015a730 C3L-04483.WGS.Tbm.hg38 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 C3L-04483.WGS.Nbc.hg38 708e41fa-402b-44c6-8464-85e884efcdf0 ade6b7ba-c37d-4883-b175-df7eb99cb12a +C3L-04486 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04486.case.cnv.gz 2200576 CNV 74dd763d85fd580aceeb32158e4c57d4 C3L-04486.WGS.Tbm.hg38 7258358e-0e5d-40cb-bf66-47a73d1e835a C3L-04486.WGS.Nbc.hg38 99844d17-85aa-41d8-8dac-ee50133783a6 64962bb4-1157-4b17-a981-86edb54b281e +C3L-04486 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04486.case.gene_level.log2.seg.gz 404954 SEG c50608fc0f5873247340cfe567a1eb0d C3L-04486.WGS.Tbm.hg38 7258358e-0e5d-40cb-bf66-47a73d1e835a C3L-04486.WGS.Nbc.hg38 99844d17-85aa-41d8-8dac-ee50133783a6 64962bb4-1157-4b17-a981-86edb54b281e +C3L-04489 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04489.case.cnv.gz 726600 CNV 49ef569a87366993b7336eb1bdf5d794 C3L-04489.WGS.Tpb.hg38 a3d3e92c-ed2b-4a4b-8291-040d062ae556 C3L-04489.WGS.Nbc.hg38 a6625c57-93f4-4c2e-b532-8c887d04f22c 8a02241b-fa45-411a-8e0b-f3d9aa22aafd +C3L-04489 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04489.case.gene_level.log2.seg.gz 350735 SEG d24172548c88e81edff177dee447067e C3L-04489.WGS.Tpb.hg38 a3d3e92c-ed2b-4a4b-8291-040d062ae556 C3L-04489.WGS.Nbc.hg38 a6625c57-93f4-4c2e-b532-8c887d04f22c 8a02241b-fa45-411a-8e0b-f3d9aa22aafd C3L-04495 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04495.cnv.gz 1965 TSV a1aa0828acb0c491f38f9bcde85b6780 C3L-04495.WGS.T.hg38 71ebf493-075b-4b39-9a05-0c17fc0b2e16 C3L-04495.WGS.N.hg38 6376abc5-61d7-45c7-950a-ef8321e16243 CNV C3L-04495 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04495.gene_level.log2.seg.gz 294371 TSV 3d6501df779cd0dce188c9070d5c3db3 C3L-04495.WGS.T.hg38 71ebf493-075b-4b39-9a05-0c17fc0b2e16 C3L-04495.WGS.N.hg38 6376abc5-61d7-45c7-950a-ef8321e16243 SEG C3L-04495 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3L-04495.case.cnv.gz 1875 CNV c3f3229afd0266c5ecffad2b419de2de C3L-04495.WGS.T.hg38 71ebf493-075b-4b39-9a05-0c17fc0b2e16 C3L-04495.WGS.N.hg38 6376abc5-61d7-45c7-950a-ef8321e16243 80c9f71c-b110-4e8e-a6ab-52baae75f63b @@ -2221,6 +2321,10 @@ C3L-04757 LUAD WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUA C3L-04757 LUAD WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04757.WGS.T.hg38.case.gene_level.log2.seg.gz 299553 SEG 260d7da8d377db550d77429acb1a68a9 C3L-04757.WGS.T.hg38 34305f06-2a3d-4e58-9625-3e051b9cb648 C3L-04757.WGS.N.hg38 622c8bbc-4f6e-4368-aad0-015fc56a074c 52ca896f-d215-465f-b32e-62009063c963 C3L-04759 LUAD WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04759.WGS.T.hg38.case.cnv.gz 6898 CNV 6465c054b432d15441715fb27cce030d C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 ed98169c-9614-4829-bb94-f82eaf26a30d C3L-04759 LUAD WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04759.WGS.T.hg38.case.gene_level.log2.seg.gz 298572 SEG b7daf918af250c79af0175c281587136 C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 ed98169c-9614-4829-bb94-f82eaf26a30d +C3L-04761 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04761.case.cnv.gz 25521 CNV 2209660a2e01ee82e74b3ca59557eb22 C3L-04761.WGS.Tbm.hg38 3d065aa6-d8f3-42d3-b435-63d257e95504 C3L-04761.WGS.Nbc.hg38 7b5193f4-61e1-40fd-97f0-eccf74fa790c 317090f3-a95a-48fb-acc6-ee0d87d34119 +C3L-04761 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04761.case.gene_level.log2.seg.gz 305136 SEG 56d1e2adf90cbae321d67285a6900b82 C3L-04761.WGS.Tbm.hg38 3d065aa6-d8f3-42d3-b435-63d257e95504 C3L-04761.WGS.Nbc.hg38 7b5193f4-61e1-40fd-97f0-eccf74fa790c 317090f3-a95a-48fb-acc6-ee0d87d34119 +C3L-04763 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04763.case.cnv.gz 31124 CNV 1f97026bc1e8e4b8af2e5780bc8f395a C3L-04763.WGS.Tbm.hg38 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f C3L-04763.WGS.Nbc.hg38 14184470-cfa5-412b-8fd5-87bc5d88068f ac9ec41a-602b-441d-9927-71602793f02e +C3L-04763 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-04763.case.gene_level.log2.seg.gz 305755 SEG 18c70d57d523135806bb8a2d1cc77e01 C3L-04763.WGS.Tbm.hg38 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f C3L-04763.WGS.Nbc.hg38 14184470-cfa5-412b-8fd5-87bc5d88068f ac9ec41a-602b-441d-9927-71602793f02e C3L-04766 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04766.case.cnv.gz 12152 CNV ef8ec5c86b852cd74328087fd0712a99 C3L-04766.WGS.Tbm.hg38 d2f6501a-b963-45d6-a9a2-671b09642337 C3L-04766.WGS.Nbc.hg38 86308fbb-f98a-4d01-92c0-dcc81d98f203 d2e14e2f-5c67-472a-8230-c85d5d9e0c90 C3L-04766 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-04766.case.gene_level.log2.seg.gz 299016 SEG eeaf4603af961fea4fb211f0c255a2aa C3L-04766.WGS.Tbm.hg38 d2f6501a-b963-45d6-a9a2-671b09642337 C3L-04766.WGS.Nbc.hg38 86308fbb-f98a-4d01-92c0-dcc81d98f203 d2e14e2f-5c67-472a-8230-c85d5d9e0c90 C3L-04786 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-04786.WGS.T.hg38.case.cnv.gz 5093 CNV 2e18d6896b5178372c63427d83385d25 C3L-04786.WGS.T.hg38 6c11187b-9320-49ed-838d-692f239d9451 C3L-04786.WGS.N.hg38 75496f29-8401-4131-b320-d16cced4737b 2ceb53b9-bbda-45c5-bd8e-b4e156596c75 @@ -2313,6 +2417,20 @@ C3L-05225 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSC C3L-05225 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05225.WGS.T.hg38.case.gene_level.log2.seg.gz 305772 SEG 59f770a6b23e2f4e209c5e0b1850c4d6 C3L-05225.WGS.T.hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 C3L-05225.WGS.N.hg38 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 e174d076-aee7-49b7-aa02-f48861ffc89c C3L-05239 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05239.WGS.T.hg38.case.cnv.gz 4417 CNV 021a321f2e8f55759cdc1b1526da9948 C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 232b9b8c-6861-4bdb-87f5-d123cb5999c2 C3L-05239 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05239.WGS.T.hg38.case.gene_level.log2.seg.gz 296434 SEG 6b637b9d6a91ae8108a5be32375c574f C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 232b9b8c-6861-4bdb-87f5-d123cb5999c2 +C3L-05317 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05317.case.cnv.gz 86537 CNV e77684f275d466f47262bdf263be02ce C3L-05317.WGS.Tpb.hg38 106a273c-f44a-47df-b769-0f5969ede688 C3L-05317.WGS.Nbc.hg38 8169035d-610e-4406-a2bf-0252251f2300 32ecf74e-9f7a-478a-8f46-c194a0b0ef38 +C3L-05317 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05317.case.gene_level.log2.seg.gz 312848 SEG 1e11ca567dfd61f35a38562d82f1ce2b C3L-05317.WGS.Tpb.hg38 106a273c-f44a-47df-b769-0f5969ede688 C3L-05317.WGS.Nbc.hg38 8169035d-610e-4406-a2bf-0252251f2300 32ecf74e-9f7a-478a-8f46-c194a0b0ef38 +C3L-05325 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05325.case.cnv.gz 19396 CNV 989e5f143f16aaf5d4bd5744b30359e6 C3L-05325.WGS.Tbm.hg38 cc26201b-60ab-42fe-b54b-01affbeb695b C3L-05325.WGS.Nbc.hg38 bd569d7a-2452-48fc-bb63-a7592fecb358 178d69c6-7af3-4274-891b-93554f28f80d +C3L-05325 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05325.case.gene_level.log2.seg.gz 303335 SEG b996af756dc6758bba575b484f7bbeda C3L-05325.WGS.Tbm.hg38 cc26201b-60ab-42fe-b54b-01affbeb695b C3L-05325.WGS.Nbc.hg38 bd569d7a-2452-48fc-bb63-a7592fecb358 178d69c6-7af3-4274-891b-93554f28f80d +C3L-05326 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05326.case.cnv.gz 5699 CNV 3621406a90ce09b4d77bb0d327aef182 C3L-05326.WGS.Tbm.hg38 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 C3L-05326.WGS.Nbc.hg38 5642b833-19b5-4ca9-86f9-5f2dccbe5689 cc342d8f-e158-46e0-b50b-42b01c0a98bd +C3L-05326 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05326.case.gene_level.log2.seg.gz 296387 SEG 3f718cdb03a47d332efa76f458a4fda5 C3L-05326.WGS.Tbm.hg38 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 C3L-05326.WGS.Nbc.hg38 5642b833-19b5-4ca9-86f9-5f2dccbe5689 cc342d8f-e158-46e0-b50b-42b01c0a98bd +C3L-05329 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05329.case.cnv.gz 5079 CNV c3a2d70425d0a5b9ba30e0d04a873136 C3L-05329.WGS.Tbm.hg38 2c76956b-1fb0-4fcf-af09-37466c893f73 C3L-05329.WGS.Nbc.hg38 791e3842-80c8-401d-a611-a5b5825f9ce7 921b0f15-f85e-4035-aa82-33d812a84b75 +C3L-05329 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05329.case.gene_level.log2.seg.gz 295705 SEG c9f0beeb3e0690317f6b91139a30c9a7 C3L-05329.WGS.Tbm.hg38 2c76956b-1fb0-4fcf-af09-37466c893f73 C3L-05329.WGS.Nbc.hg38 791e3842-80c8-401d-a611-a5b5825f9ce7 921b0f15-f85e-4035-aa82-33d812a84b75 +C3L-05331 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05331.case.cnv.gz 19730 CNV d65c8c158b53bee1d027b232ff40180e C3L-05331.WGS.Tbm.hg38 f1fae58f-9b1b-4025-a253-9dcb308f4beb C3L-05331.WGS.Nbc.hg38 bbf8979f-080d-4a93-8c81-3b5b44a6a5db 6a9699fc-11cb-443f-97c2-4bddb0cbd357 +C3L-05331 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05331.case.gene_level.log2.seg.gz 302785 SEG 93fb8eb1908bc14897c2dfa54ff012d8 C3L-05331.WGS.Tbm.hg38 f1fae58f-9b1b-4025-a253-9dcb308f4beb C3L-05331.WGS.Nbc.hg38 bbf8979f-080d-4a93-8c81-3b5b44a6a5db 6a9699fc-11cb-443f-97c2-4bddb0cbd357 +C3L-05335 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05335.case.cnv.gz 33014 CNV 4f78654bd8f565277550b7a9082e0a22 C3L-05335.WGS.Tbm.hg38 66e7a5d3-2eff-4840-ab1e-448203643be7 C3L-05335.WGS.Nbc.hg38 76841f2b-4fd7-4071-b9d5-e5b573c876f0 166e61b7-10a1-42a3-a64f-c0fb5da34ee6 +C3L-05335 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05335.case.gene_level.log2.seg.gz 302869 SEG 4e4ac725c474c26a5f14338b2bccb080 C3L-05335.WGS.Tbm.hg38 66e7a5d3-2eff-4840-ab1e-448203643be7 C3L-05335.WGS.Nbc.hg38 76841f2b-4fd7-4071-b9d5-e5b573c876f0 166e61b7-10a1-42a3-a64f-c0fb5da34ee6 +C3L-05338 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05338.case.cnv.gz 213863 CNV e554700ab6f8c4ce73c2e44a35ad30ad C3L-05338.WGS.Tbm.hg38 296b2dfb-9d7b-46c4-a848-4f96f19bb99b C3L-05338.WGS.Nbc.hg38 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 8383fef7-3e2c-4496-9bac-4f5288c8dbab +C3L-05338 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05338.case.gene_level.log2.seg.gz 326265 SEG 1440616b6174e7fc5c16e5b4ddcf155d C3L-05338.WGS.Tbm.hg38 296b2dfb-9d7b-46c4-a848-4f96f19bb99b C3L-05338.WGS.Nbc.hg38 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 8383fef7-3e2c-4496-9bac-4f5288c8dbab C3L-05369 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05369.WGS.T.hg38.case.cnv.gz 7456 CNV 7136aa5bd8ddfedc86d181986d2d6f3c C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 0caaa6fc-8f40-468a-985c-31ba9fee71f2 C3L-05369 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05369.WGS.T.hg38.case.gene_level.log2.seg.gz 298313 SEG 177a4a3a89acacfd7cb6060fa13c9037 C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 0caaa6fc-8f40-468a-985c-31ba9fee71f2 C3L-05386 AML WGS_CNV_Somatic v2.5 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_CPTAC3_AML_CNV_20220419/C3L-05386.case.cnv.gz 3649 CNV 3240382e45b6ef4c85998c2374c183ee C3L-05386.WGS.Tpb.hg38 f47fe90d-7a83-4f95-9c44-0c4ebc39d6b3 C3L-05386.WGS.Nbc.hg38 53b93788-0e38-4cb9-b5f2-818b0488012e ee79d9cc-6f2e-4955-b8ff-1f69eae0b6f9 @@ -2344,12 +2462,26 @@ C3L-05427 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSC C3L-05427 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05427.WGS.T.hg38.case.gene_level.log2.seg.gz 296217 SEG e305c1ced0daf413756c73e8fe25f798 C3L-05427.WGS.T.hg38 4329ac2a-b1af-4698-9bc5-8cf6776181b4 C3L-05427.WGS.N.hg38 28017ff1-f4d8-485f-b4fd-a52523420749 253a381d-9741-4d4f-a665-e63756f21c07 C3L-05428 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05428.WGS.T.hg38.case.cnv.gz 5468 CNV 461fb07713e28e7f30a693d275dbe829 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 9c800f1b-bd22-41a9-9e80-8c9992be9f06 C3L-05428 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05428.WGS.T.hg38.case.gene_level.log2.seg.gz 297060 SEG 74545eead34a758da47073526285274b C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 9c800f1b-bd22-41a9-9e80-8c9992be9f06 +C3L-05481 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05481.case.cnv.gz 7848 CNV 3ab25c5165ea07032f0302eddc9c08d0 C3L-05481.WGS.T.hg38 7e51a55c-1945-4568-9355-6f037446733b C3L-05481.WGS.N.hg38 299c23c9-022e-44e9-82fd-c42f53062863 ff2a145b-4b5a-49ad-b9d1-add6bda90949 +C3L-05481 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05481.case.gene_level.log2.seg.gz 296746 SEG a1b15cd4ce8ba03e19b0bca68d850f00 C3L-05481.WGS.T.hg38 7e51a55c-1945-4568-9355-6f037446733b C3L-05481.WGS.N.hg38 299c23c9-022e-44e9-82fd-c42f53062863 ff2a145b-4b5a-49ad-b9d1-add6bda90949 C3L-05571 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-05571.C3L-05571.cnv.gz 21246 TSV 021bfa12b9c603e6f596c2e24d64ab52 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 CNV C3L-05571 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-05571.C3L-05571.gene_level.log2.seg.gz 306143 TSV 8dba1ff29bec3e0297d967aaa6f17aef C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 SEG C3L-05571 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-05571.WGS.T.hg38.case.cnv.gz 19845 CNV 69906c00ae9833ee336123bc285cad14 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 8e0f9f54-aa4e-4939-925d-f41c7ad2a5d3 C3L-05571 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-05571.WGS.T.hg38.case.gene_level.log2.seg.gz 305886 SEG a214c1fa368e584c242369a41140e4d3 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 8e0f9f54-aa4e-4939-925d-f41c7ad2a5d3 +C3L-05678 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05678.case.cnv.gz 8731 CNV 8d1989bed847c8b09c935c58d6c13cc2 C3L-05678.WGS.Tpb.hg38 c9e37e32-d97e-4d6d-8ea9-843141103d21 C3L-05678.WGS.Nbc.hg38 42c8a39f-c216-4b9b-9397-0e17f6c3787f 60afeaf0-d192-48c9-8b82-ea24687c69de +C3L-05678 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05678.case.gene_level.log2.seg.gz 298264 SEG 53d5ed89f18b5ccd3c689960043e5679 C3L-05678.WGS.Tpb.hg38 c9e37e32-d97e-4d6d-8ea9-843141103d21 C3L-05678.WGS.Nbc.hg38 42c8a39f-c216-4b9b-9397-0e17f6c3787f 60afeaf0-d192-48c9-8b82-ea24687c69de C3L-05693 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05693.WGS.T.hg38.case.cnv.gz 10328 CNV e7a1603bb20e1c744051e96da47c5722 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 8728872d-93d8-4ee0-9daf-4edfa9596388 C3L-05693 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-05693.WGS.T.hg38.case.gene_level.log2.seg.gz 299364 SEG 90a72cc0fe44b3629150cf7949daa768 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 8728872d-93d8-4ee0-9daf-4edfa9596388 +C3L-05811 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05811.case.cnv.gz 9424 CNV 1d8870f2a10e348395dac5bedbe7004c C3L-05811.WGS.Tpb.hg38 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 C3L-05811.WGS.Nbc.hg38 181017af-d709-456e-ac61-d28f02aee849 fa246597-8bd3-4a17-904c-a600341f4fa3 +C3L-05811 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05811.case.gene_level.log2.seg.gz 298667 SEG cd8645103f89b63dc45b89b08b953236 C3L-05811.WGS.Tpb.hg38 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 C3L-05811.WGS.Nbc.hg38 181017af-d709-456e-ac61-d28f02aee849 fa246597-8bd3-4a17-904c-a600341f4fa3 +C3L-05815 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05815.case.cnv.gz 17683 CNV f6c915df041fd54bf3e34695514dae9f C3L-05815.WGS.Tpb.hg38 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a C3L-05815.WGS.Nbc.hg38 16782800-b974-449d-a904-63e0450305c1 69029081-2eab-4836-bec3-5ddff3f4ae51 +C3L-05815 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05815.case.gene_level.log2.seg.gz 303652 SEG 37df2e6929fe0e27640e1559ad4aec08 C3L-05815.WGS.Tpb.hg38 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a C3L-05815.WGS.Nbc.hg38 16782800-b974-449d-a904-63e0450305c1 69029081-2eab-4836-bec3-5ddff3f4ae51 +C3L-05816 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05816.case.cnv.gz 10282 CNV 50ed06d12d781362842d136b64434516 C3L-05816.WGS.Tpb.hg38 56e0e868-c221-40e0-9757-a091ca137a68 C3L-05816.WGS.Nbc.hg38 0cc98eed-522d-4c11-927f-456208e184d8 e28cb106-3599-404b-adb6-cf1d7ba74537 +C3L-05816 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05816.case.gene_level.log2.seg.gz 299218 SEG 4cc1316c07e4ab371a6a8d4af0c69817 C3L-05816.WGS.Tpb.hg38 56e0e868-c221-40e0-9757-a091ca137a68 C3L-05816.WGS.Nbc.hg38 0cc98eed-522d-4c11-927f-456208e184d8 e28cb106-3599-404b-adb6-cf1d7ba74537 +C3L-05818 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05818.case.cnv.gz 384149 CNV d226110ac6d1867c664092dc7d2a11cc C3L-05818.WGS.Tpb.hg38 33763a8a-1d39-4242-a314-022ebf386cde C3L-05818.WGS.Nbc.hg38 79f3bf76-08d2-40cc-a261-d303e5d51318 707fdaf7-b97f-4b67-b93f-66e045235b17 +C3L-05818 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05818.case.gene_level.log2.seg.gz 327965 SEG 506696bed3e911b0d749ff0395152a92 C3L-05818.WGS.Tpb.hg38 33763a8a-1d39-4242-a314-022ebf386cde C3L-05818.WGS.Nbc.hg38 79f3bf76-08d2-40cc-a261-d303e5d51318 707fdaf7-b97f-4b67-b93f-66e045235b17 +C3L-05819 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05819.case.cnv.gz 8684 CNV c418f81ee3cb236d8bd9dfdd558060a7 C3L-05819.WGS.Tpb.hg38 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc C3L-05819.WGS.Nbc.hg38 08e4d192-7b7d-4f5a-859f-7a804bca3ddf ec567fb3-30b9-41eb-903f-93de70a7fefc +C3L-05819 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05819.case.gene_level.log2.seg.gz 298753 SEG 80d0f52432fb21c860d45d63721462b0 C3L-05819.WGS.Tpb.hg38 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc C3L-05819.WGS.Nbc.hg38 08e4d192-7b7d-4f5a-859f-7a804bca3ddf ec567fb3-30b9-41eb-903f-93de70a7fefc C3L-05848 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-05848.C3L-05848.cnv.gz 48670 TSV be5c3de7629ca97869fd886d1a3a334e C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 CNV C3L-05848 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-05848.C3L-05848.gene_level.log2.seg.gz 311000 TSV 4b7e801a989b5297d648934a2f8eebe2 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 SEG C3L-05848 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-05848.WGS.T.hg38.case.cnv.gz 17142 CNV b09e523239f9bf88d00d6ba9f7ecc18d C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 ea0eece7-4d3b-464d-a3c9-b34c039fadb0 @@ -2358,8 +2490,144 @@ C3L-05849 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCE C3L-05849 UCEC WGS_CNV_Somatic v2.1 20210608 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.1_UCEC_rerun_20210608/C3L-05849.C3L-05849.gene_level.log2.seg.gz 299565 TSV 2da1a91c0e68072143d7c027d0e6cc57 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 SEG C3L-05849 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-05849.WGS.T.hg38.case.cnv.gz 9692 CNV e5d2d3ad319fe4d37f3a098ce92decee C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 202a1458-ce90-4885-a9a6-dd7f7221c15f C3L-05849 UCEC WGS_CNV_Somatic v2.5 20210803 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.5_UCEC_rerun.v2.5_20210803/C3L-05849.WGS.T.hg38.case.gene_level.log2.seg.gz 300003 SEG c15d84ef039bba77a81176d89b747534 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 202a1458-ce90-4885-a9a6-dd7f7221c15f +C3L-05861 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05861.case.cnv.gz 88635 CNV 62bf08479f330b2756bcb177a53887ed C3L-05861.WGS.Tbm.hg38 6e5f92dc-1661-4759-80cb-565482e59b19 C3L-05861.WGS.Nbc.hg38 a45b486c-f931-4d85-a7db-ed57d173c8ba 249e3494-a8c9-46c8-8035-133a3cbdb67e +C3L-05861 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05861.case.gene_level.log2.seg.gz 320662 SEG 65eba58f4ec500c3fc307e243e9b11c1 C3L-05861.WGS.Tbm.hg38 6e5f92dc-1661-4759-80cb-565482e59b19 C3L-05861.WGS.Nbc.hg38 a45b486c-f931-4d85-a7db-ed57d173c8ba 249e3494-a8c9-46c8-8035-133a3cbdb67e +C3L-05862 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05862.case.cnv.gz 84811 CNV e64a9f17a87cc83b8cb09537b07b9138 C3L-05862.WGS.Tpb.hg38 dd71b842-dcca-436e-bd57-2a4a47945ea1 C3L-05862.WGS.Nbc.hg38 cc820c53-59a0-4c02-ad49-62d668703147 5c658b40-774f-42ce-91fd-d88c435c8c90 +C3L-05862 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05862.case.gene_level.log2.seg.gz 311889 SEG 6684171ec040fdb575db1ae01fe243ba C3L-05862.WGS.Tpb.hg38 dd71b842-dcca-436e-bd57-2a4a47945ea1 C3L-05862.WGS.Nbc.hg38 cc820c53-59a0-4c02-ad49-62d668703147 5c658b40-774f-42ce-91fd-d88c435c8c90 +C3L-05865 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05865.case.cnv.gz 1318623 CNV 08addcad30f9311cfca025e48b5671da C3L-05865.WGS.Tbm.hg38 76bd6c51-c345-4984-b88a-869c51ebd318 C3L-05865.WGS.Nbc.hg38 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 10b8d1a3-7fd0-4b42-95be-de3acc816146 +C3L-05865 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05865.case.gene_level.log2.seg.gz 345685 SEG b82c1c8ea52747d651481a61f0e7dcd6 C3L-05865.WGS.Tbm.hg38 76bd6c51-c345-4984-b88a-869c51ebd318 C3L-05865.WGS.Nbc.hg38 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 10b8d1a3-7fd0-4b42-95be-de3acc816146 +C3L-05866 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05866.case.cnv.gz 17747 CNV b1772087a47474f63034ba3d22ee0469 C3L-05866.WGS.Tbm.hg38 cabdf6e7-64e2-4429-87d0-7f95a3c9054f C3L-05866.WGS.Nbc.hg38 7f823e8f-f7ae-4cc6-a260-7e07843b534d 17201197-b892-4285-8d9c-a95086bd9607 +C3L-05866 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05866.case.gene_level.log2.seg.gz 300929 SEG 38bd663da089ea9208c860a77bd00312 C3L-05866.WGS.Tbm.hg38 cabdf6e7-64e2-4429-87d0-7f95a3c9054f C3L-05866.WGS.Nbc.hg38 7f823e8f-f7ae-4cc6-a260-7e07843b534d 17201197-b892-4285-8d9c-a95086bd9607 +C3L-05870 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05870.case.cnv.gz 4033062 CNV 8c2f9d8b48f2a2e6fcb7c9128118c4c7 C3L-05870.WGS.Tpb.hg38 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 C3L-05870.WGS.Nbc.hg38 08dc064e-d5a3-417c-ac3a-562b88329bc9 241ce28c-e629-4431-89e1-b61fe514d7ec +C3L-05870 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05870.case.gene_level.log2.seg.gz 441586 SEG 3c5d15127e42124fba0a45e6a054c66a C3L-05870.WGS.Tpb.hg38 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 C3L-05870.WGS.Nbc.hg38 08dc064e-d5a3-417c-ac3a-562b88329bc9 241ce28c-e629-4431-89e1-b61fe514d7ec +C3L-05872 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05872.case.cnv.gz 14339 CNV c1e16b07de5052d94f8c7bd2510fa796 C3L-05872.WGS.Tbm.hg38 571c510d-7fcc-40fd-8f1f-905375d8dfcc C3L-05872.WGS.Nbc.hg38 64766b93-1829-4232-a292-eeaf37c967b9 8791b775-e393-4fbd-bfb8-d1635b8ed1f0 +C3L-05872 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05872.case.gene_level.log2.seg.gz 300484 SEG 966160d8425b2d48adaa457ee81c63ba C3L-05872.WGS.Tbm.hg38 571c510d-7fcc-40fd-8f1f-905375d8dfcc C3L-05872.WGS.Nbc.hg38 64766b93-1829-4232-a292-eeaf37c967b9 8791b775-e393-4fbd-bfb8-d1635b8ed1f0 +C3L-05877 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05877.case.cnv.gz 173368 CNV 8e160eee909b9f47d35b16c9c1ddbe43 C3L-05877.WGS.Tbm.hg38 b158bbad-df67-4297-970f-9186bbc0a2bd C3L-05877.WGS.Nbc.hg38 0dcc0454-f17b-4951-9437-ff2891e22852 41e586eb-ddd5-4fab-8ce7-4902a54d5eed +C3L-05877 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05877.case.gene_level.log2.seg.gz 322078 SEG d83a5d50f53aba3b8d0666e6afb48a87 C3L-05877.WGS.Tbm.hg38 b158bbad-df67-4297-970f-9186bbc0a2bd C3L-05877.WGS.Nbc.hg38 0dcc0454-f17b-4951-9437-ff2891e22852 41e586eb-ddd5-4fab-8ce7-4902a54d5eed +C3L-05880 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05880.case.cnv.gz 10230 CNV f790ef77749ba3c912b1b97748703742 C3L-05880.WGS.Tbm.hg38 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 C3L-05880.WGS.Nbc.hg38 a4668566-e4f8-46a6-af3b-1879baa49290 03ddb865-8a73-476a-b21f-c7cadeda3cba +C3L-05880 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05880.case.gene_level.log2.seg.gz 297283 SEG f1ada723eba613005882b75ce3f3cc4b C3L-05880.WGS.Tbm.hg38 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 C3L-05880.WGS.Nbc.hg38 a4668566-e4f8-46a6-af3b-1879baa49290 03ddb865-8a73-476a-b21f-c7cadeda3cba +C3L-05884 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05884.case.cnv.gz 15125 CNV 37b5587ee3abf0ba711d4dbe8d3773d1 C3L-05884.WGS.Tbm.hg38 766dc870-eef3-4df7-88ef-16e5b7950943 C3L-05884.WGS.Nbc.hg38 0872d590-4c7c-4270-879e-d60630f04982 32a397d1-9220-4c61-a131-0c57c10db52e +C3L-05884 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05884.case.gene_level.log2.seg.gz 299381 SEG c073251f5ba2515679a26cc92baf09b9 C3L-05884.WGS.Tbm.hg38 766dc870-eef3-4df7-88ef-16e5b7950943 C3L-05884.WGS.Nbc.hg38 0872d590-4c7c-4270-879e-d60630f04982 32a397d1-9220-4c61-a131-0c57c10db52e +C3L-05887 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05887.case.cnv.gz 49350 CNV 68474954c7cac262e2a94bd8b76a6f56 C3L-05887.WGS.Tbm.hg38 4e4e94e7-8082-469d-a621-8f506bead92f C3L-05887.WGS.Nbc.hg38 dbebe5b3-751c-418b-92ca-7a2e95782be0 4ee51a30-846f-472c-be77-094e01f930e9 +C3L-05887 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05887.case.gene_level.log2.seg.gz 310030 SEG 91f3728331ff5272ad859044e12dadd0 C3L-05887.WGS.Tbm.hg38 4e4e94e7-8082-469d-a621-8f506bead92f C3L-05887.WGS.Nbc.hg38 dbebe5b3-751c-418b-92ca-7a2e95782be0 4ee51a30-846f-472c-be77-094e01f930e9 +C3L-05888 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05888.case.cnv.gz 248308 CNV 8d6ad4b4bf93cc21eb7e7410f6ebb9a4 C3L-05888.WGS.Tbm.hg38 1d979e9f-8895-43ac-b026-82da5d317b60 C3L-05888.WGS.Nbc.hg38 6c758b3c-100a-4699-abc1-60fea47b26ce efff76ce-4f03-4e80-b826-5cc86ade958a +C3L-05888 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05888.case.gene_level.log2.seg.gz 340828 SEG 3a86dd3ad88e2c9df05a6cc5f9c852f0 C3L-05888.WGS.Tbm.hg38 1d979e9f-8895-43ac-b026-82da5d317b60 C3L-05888.WGS.Nbc.hg38 6c758b3c-100a-4699-abc1-60fea47b26ce efff76ce-4f03-4e80-b826-5cc86ade958a +C3L-05889 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05889.case.cnv.gz 28544 CNV 6e466378e9c456ac97f12b73e319d782 C3L-05889.WGS.Tbm.hg38 75ed27c4-40d0-4082-9acf-9a19fd96b6df C3L-05889.WGS.Nbc.hg38 da5f49f1-d186-45bd-915a-227329e8b998 9b071935-10c8-44b4-96fa-2bc514c9c68e +C3L-05889 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05889.case.gene_level.log2.seg.gz 305639 SEG 0c18a0a3911491163364102e6ed7cbb1 C3L-05889.WGS.Tbm.hg38 75ed27c4-40d0-4082-9acf-9a19fd96b6df C3L-05889.WGS.Nbc.hg38 da5f49f1-d186-45bd-915a-227329e8b998 9b071935-10c8-44b4-96fa-2bc514c9c68e +C3L-05891 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05891.case.cnv.gz 56014 CNV 842a9c59b5ee8a2e67f87ee7a3badfd3 C3L-05891.WGS.Tbm.hg38 9f9777c6-debb-46c5-a695-f9d04ec1236c C3L-05891.WGS.Nbc.hg38 aa5e5bd5-4de1-4fc8-9900-db318dd44574 3f6509ec-f4d2-4152-b9e9-9ff5b9f3ead8 +C3L-05891 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05891.case.gene_level.log2.seg.gz 311876 SEG 868a1c59170ad76e70e0047e479030e3 C3L-05891.WGS.Tbm.hg38 9f9777c6-debb-46c5-a695-f9d04ec1236c C3L-05891.WGS.Nbc.hg38 aa5e5bd5-4de1-4fc8-9900-db318dd44574 3f6509ec-f4d2-4152-b9e9-9ff5b9f3ead8 +C3L-05896 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05896.case.cnv.gz 12107 CNV 8c6402d3768e4ef5351ed3ccd178cc61 C3L-05896.WGS.Tbm.hg38 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 C3L-05896.WGS.Nbc.hg38 80234ef6-f17c-4840-ae61-720e520c53ee 0ec8c048-4fc2-43ff-9077-93049afa4334 +C3L-05896 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05896.case.gene_level.log2.seg.gz 298968 SEG f3c90a6f27ef4cf0ceeedc81b47b01bc C3L-05896.WGS.Tbm.hg38 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 C3L-05896.WGS.Nbc.hg38 80234ef6-f17c-4840-ae61-720e520c53ee 0ec8c048-4fc2-43ff-9077-93049afa4334 +C3L-05905 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05905.case.cnv.gz 10879 CNV e851a9a7b536c95fd93f8f6a8387b420 C3L-05905.WGS.Tpb.hg38 10d9505e-54f3-4fda-8d41-9397231019b3 C3L-05905.WGS.Nbc.hg38 f3356d52-443e-430b-b183-c2255a34aee4 ee85d9da-b79a-4987-aba7-2cd934a3c269 +C3L-05905 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05905.case.gene_level.log2.seg.gz 297604 SEG 22cda49d0fc5ab1b05b1121f555bfc95 C3L-05905.WGS.Tpb.hg38 10d9505e-54f3-4fda-8d41-9397231019b3 C3L-05905.WGS.Nbc.hg38 f3356d52-443e-430b-b183-c2255a34aee4 ee85d9da-b79a-4987-aba7-2cd934a3c269 +C3L-05908 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05908.case.cnv.gz 6562 CNV 96fe111e98e9314aeef7bb15d750f0d8 C3L-05908.WGS.Tbm.hg38 bb0e880d-d80c-4380-87d3-ee42c919d1cb C3L-05908.WGS.Nbc.hg38 7bef082d-803e-45b2-b53e-5a1399bf1b5c d3317b3f-82bf-43e3-8446-3530468fa651 +C3L-05908 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-05908.case.gene_level.log2.seg.gz 296783 SEG 765ea16f0556ab8ea07cf36155276c05 C3L-05908.WGS.Tbm.hg38 bb0e880d-d80c-4380-87d3-ee42c919d1cb C3L-05908.WGS.Nbc.hg38 7bef082d-803e-45b2-b53e-5a1399bf1b5c d3317b3f-82bf-43e3-8446-3530468fa651 +C3L-06061 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06061.case.cnv.gz 9515 CNV 661dc87fa88289117692058512646740 C3L-06061.WGS.Tbm.hg38 df2b1538-16cb-4e8b-8347-592204bd6de2 C3L-06061.WGS.Nbc.hg38 d3aa2183-2a2b-49cb-94aa-722bb084d738 6063cc0c-6f19-40f9-b9e2-e3c71cb55261 +C3L-06061 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06061.case.gene_level.log2.seg.gz 297316 SEG 4acc5603cd9bb5d52bcf99f57df85dad C3L-06061.WGS.Tbm.hg38 df2b1538-16cb-4e8b-8347-592204bd6de2 C3L-06061.WGS.Nbc.hg38 d3aa2183-2a2b-49cb-94aa-722bb084d738 6063cc0c-6f19-40f9-b9e2-e3c71cb55261 +C3L-06063 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06063.case.cnv.gz 25272 CNV 7378c1161f20e5a4a174e441dd1f214a C3L-06063.WGS.Tbm.hg38 e8f9b051-60b0-4579-b572-7b85f6a049e9 C3L-06063.WGS.Nbc.hg38 b3d51cee-b87d-49f6-ab1d-58196bb20849 80aeb2db-c1e9-4c3c-9486-faace5243a8d +C3L-06063 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06063.case.gene_level.log2.seg.gz 302781 SEG 6b7d3bc60d6e966b267736cab7c63691 C3L-06063.WGS.Tbm.hg38 e8f9b051-60b0-4579-b572-7b85f6a049e9 C3L-06063.WGS.Nbc.hg38 b3d51cee-b87d-49f6-ab1d-58196bb20849 80aeb2db-c1e9-4c3c-9486-faace5243a8d +C3L-06064 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06064.case.cnv.gz 25291 CNV 006297af4021e2263629ce8916044777 C3L-06064.WGS.Tbm.hg38 57ed6f78-7ead-42e1-91d1-8922419b163c C3L-06064.WGS.Nbc.hg38 c7599d97-a30f-463f-82c9-b3f8dfc5abbe 3c2c312b-99f7-4416-9c6f-190b2e5c3809 +C3L-06064 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06064.case.gene_level.log2.seg.gz 304048 SEG ab506ab1c7f6f73855be32906661041b C3L-06064.WGS.Tbm.hg38 57ed6f78-7ead-42e1-91d1-8922419b163c C3L-06064.WGS.Nbc.hg38 c7599d97-a30f-463f-82c9-b3f8dfc5abbe 3c2c312b-99f7-4416-9c6f-190b2e5c3809 +C3L-06066 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06066.case.cnv.gz 2767 CNV 7784d5f8345d1f25b717434e9233064d C3L-06066.WGS.Tbm.hg38 ef8c9afd-27b8-4c74-abda-f2a080cbe817 C3L-06066.WGS.Nbc.hg38 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 4bef93c8-cb87-4a84-b8ca-7b60cff213f6 +C3L-06066 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06066.case.gene_level.log2.seg.gz 295249 SEG 9fd6a47549a7187a586bf140663aad10 C3L-06066.WGS.Tbm.hg38 ef8c9afd-27b8-4c74-abda-f2a080cbe817 C3L-06066.WGS.Nbc.hg38 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 4bef93c8-cb87-4a84-b8ca-7b60cff213f6 +C3L-06067 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06067.case.cnv.gz 11396 CNV 443bd63672baf0aabc37e55417459a80 C3L-06067.WGS.Tbm.hg38 7fa81a7c-59ad-4ece-a675-850df0bae7c2 C3L-06067.WGS.Nbc.hg38 dfd184ff-b179-4ab5-9587-83ed28776f05 0085cebf-3e25-446c-8790-d45f06e65382 +C3L-06067 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06067.case.gene_level.log2.seg.gz 299338 SEG 08013430a9067a8f905fe4d61deaf335 C3L-06067.WGS.Tbm.hg38 7fa81a7c-59ad-4ece-a675-850df0bae7c2 C3L-06067.WGS.Nbc.hg38 dfd184ff-b179-4ab5-9587-83ed28776f05 0085cebf-3e25-446c-8790-d45f06e65382 +C3L-06068 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06068.case.cnv.gz 27448 CNV e02be03459983f9b623dc7181b96770c C3L-06068.WGS.Tbm.hg38 aa7b5688-3e56-4228-becf-ccb94c76f378 C3L-06068.WGS.Nbc.hg38 f1b8e0e8-78c2-4480-b230-d7d243dcae43 83ecda73-ed9b-46cd-a77b-550abb2762a3 +C3L-06068 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06068.case.gene_level.log2.seg.gz 304390 SEG 0e86359ef8e4228d35f5a35b2b5841b7 C3L-06068.WGS.Tbm.hg38 aa7b5688-3e56-4228-becf-ccb94c76f378 C3L-06068.WGS.Nbc.hg38 f1b8e0e8-78c2-4480-b230-d7d243dcae43 83ecda73-ed9b-46cd-a77b-550abb2762a3 +C3L-06069 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06069.case.cnv.gz 3702 CNV 292b310c312dd8a3a9f7818a0b7aa5e4 C3L-06069.WGS.Tbm.hg38 6479fcbc-6431-49c3-bb94-71a681a7438f C3L-06069.WGS.Nbc.hg38 fdc8d9db-7c70-44f3-b4bf-79729d61e81e 7747ec27-0419-49b8-8fbd-f15991236bba +C3L-06069 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06069.case.gene_level.log2.seg.gz 295500 SEG fc9b74387059cdfe67356a6daa6d51bb C3L-06069.WGS.Tbm.hg38 6479fcbc-6431-49c3-bb94-71a681a7438f C3L-06069.WGS.Nbc.hg38 fdc8d9db-7c70-44f3-b4bf-79729d61e81e 7747ec27-0419-49b8-8fbd-f15991236bba +C3L-06070 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06070.case.cnv.gz 33871 CNV 4fd51da54616caf96c42c9d9fbe457c5 C3L-06070.WGS.Tbm.hg38 c3419350-e9c5-489f-beec-f35203a5c2a4 C3L-06070.WGS.Nbc.hg38 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 63b479a0-2456-480d-8a2e-dcee9ea9faec +C3L-06070 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06070.case.gene_level.log2.seg.gz 304193 SEG fa6b1c07cd5283f5ea0cda70ea57cfda C3L-06070.WGS.Tbm.hg38 c3419350-e9c5-489f-beec-f35203a5c2a4 C3L-06070.WGS.Nbc.hg38 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 63b479a0-2456-480d-8a2e-dcee9ea9faec +C3L-06072 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06072.case.cnv.gz 405349 CNV c862733cd0d005bb2e17094577fdf42c C3L-06072.WGS.Tpb.hg38 d89ac0df-eada-4938-9b40-4ff3515eacdb C3L-06072.WGS.Nbc.hg38 343a85c3-aea3-4ca6-88e8-dadeff887a4f 6d58a977-6d2e-4fa1-8b3f-2a03779d8be8 +C3L-06072 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06072.case.gene_level.log2.seg.gz 332164 SEG ebb11808d98356ffef10e327453c6fa3 C3L-06072.WGS.Tpb.hg38 d89ac0df-eada-4938-9b40-4ff3515eacdb C3L-06072.WGS.Nbc.hg38 343a85c3-aea3-4ca6-88e8-dadeff887a4f 6d58a977-6d2e-4fa1-8b3f-2a03779d8be8 +C3L-06074 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06074.case.cnv.gz 133212 CNV 798167c1ce796934eaf83aba1c239800 C3L-06074.WGS.Tpb.hg38 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 C3L-06074.WGS.Nbc.hg38 d389e536-718a-4c9c-99c7-8301baa0fd09 905afa7c-8944-4747-959f-9ffdb618eb63 +C3L-06074 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06074.case.gene_level.log2.seg.gz 322675 SEG 43f558e167d9e102179bb092197cd265 C3L-06074.WGS.Tpb.hg38 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 C3L-06074.WGS.Nbc.hg38 d389e536-718a-4c9c-99c7-8301baa0fd09 905afa7c-8944-4747-959f-9ffdb618eb63 +C3L-06075 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06075.case.cnv.gz 4957129 CNV 1bb2492d82f11d8f09cf697e7bb03058 C3L-06075.WGS.Tbm.hg38 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 C3L-06075.WGS.Nbc.hg38 47e8d381-d52d-4117-b450-ab265a010af9 19587fe2-39c7-4a28-8512-ac4e1c1680ef +C3L-06075 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06075.case.gene_level.log2.seg.gz 428939 SEG 92fcf02323767552762c610fc19afbd5 C3L-06075.WGS.Tbm.hg38 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 C3L-06075.WGS.Nbc.hg38 47e8d381-d52d-4117-b450-ab265a010af9 19587fe2-39c7-4a28-8512-ac4e1c1680ef +C3L-06081 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06081.case.cnv.gz 129478 CNV fe98caa9da9bc67d0c1de75c6263227c C3L-06081.WGS.Tbm.hg38 8a5d9822-2aac-41de-a04c-3bfcc975bd20 C3L-06081.WGS.Nbc.hg38 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 a429e770-6322-42e4-a506-9dc8ea43b8d8 +C3L-06081 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06081.case.gene_level.log2.seg.gz 315441 SEG 9a9499fb34e5ad7b54ed6b3fb4272a37 C3L-06081.WGS.Tbm.hg38 8a5d9822-2aac-41de-a04c-3bfcc975bd20 C3L-06081.WGS.Nbc.hg38 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 a429e770-6322-42e4-a506-9dc8ea43b8d8 +C3L-06087 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06087.case.cnv.gz 6305 CNV e25c2d080f349903e2120ebc3f1908b8 C3L-06087.WGS.Tpb.hg38 da1742db-aaf8-4617-a695-fea2359a0c0b C3L-06087.WGS.Nbc.hg38 76fbce3e-9d03-4812-af81-48f4ece89e38 9a85e066-c02c-474b-88b5-11994b5667e5 +C3L-06087 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06087.case.gene_level.log2.seg.gz 297231 SEG 92e528299c7010d3003b8849d9d461a8 C3L-06087.WGS.Tpb.hg38 da1742db-aaf8-4617-a695-fea2359a0c0b C3L-06087.WGS.Nbc.hg38 76fbce3e-9d03-4812-af81-48f4ece89e38 9a85e066-c02c-474b-88b5-11994b5667e5 +C3L-06089 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06089.case.cnv.gz 57074 CNV f08664370bda2be72a6538967a6a1dbd C3L-06089.WGS.Tpb.hg38 37b73a94-d717-4fad-b01b-6f184d89e923 C3L-06089.WGS.Nbc.hg38 08e06a2b-fa98-47c2-8e5d-8a17196c3211 ef746a6d-c296-4741-8f2a-08068c2eafaf +C3L-06089 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06089.case.gene_level.log2.seg.gz 307509 SEG e5e2e46279c8d15b6bfb442cb5058f28 C3L-06089.WGS.Tpb.hg38 37b73a94-d717-4fad-b01b-6f184d89e923 C3L-06089.WGS.Nbc.hg38 08e06a2b-fa98-47c2-8e5d-8a17196c3211 ef746a6d-c296-4741-8f2a-08068c2eafaf +C3L-06090 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06090.case.cnv.gz 8765 CNV bdb18a487bb812fdb15d1f60b00b4f6e C3L-06090.WGS.Tpb.hg38 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a C3L-06090.WGS.Nbc.hg38 a722364a-e5e2-4e48-b998-36ebf73181a1 03050dd2-ed4b-4978-9e5c-71a15d9f64ba +C3L-06090 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06090.case.gene_level.log2.seg.gz 298380 SEG 1836b3508c1d1460925d0264769c8f1d C3L-06090.WGS.Tpb.hg38 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a C3L-06090.WGS.Nbc.hg38 a722364a-e5e2-4e48-b998-36ebf73181a1 03050dd2-ed4b-4978-9e5c-71a15d9f64ba C3L-06169 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-06169.WGS.T.hg38.case.cnv.gz 7167 CNV cc9dde2b7b81b3993740c5423c7f432b C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a a82daffb-8b45-4a5f-8f3d-5482db9f687e C3L-06169 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3L-06169.WGS.T.hg38.case.gene_level.log2.seg.gz 298081 SEG 1629634d11a66ac464c327304cff51d6 C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a a82daffb-8b45-4a5f-8f3d-5482db9f687e +C3L-06352 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06352.case.cnv.gz 190359 CNV e1d695fa2f69687a49251c67e4f1090d C3L-06352.WGS.Tpb.hg38 17c81b9e-2685-4178-8bb1-046c9380bfba C3L-06352.WGS.Nbc.hg38 27595487-bbe0-436e-b38c-1d86aa50d8b0 1bb64d0d-e2a8-438d-9390-6ae97bb4497f +C3L-06352 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06352.case.gene_level.log2.seg.gz 338500 SEG fc8b90102f00f58a50fd770934c64caf C3L-06352.WGS.Tpb.hg38 17c81b9e-2685-4178-8bb1-046c9380bfba C3L-06352.WGS.Nbc.hg38 27595487-bbe0-436e-b38c-1d86aa50d8b0 1bb64d0d-e2a8-438d-9390-6ae97bb4497f +C3L-06356 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06356.case.cnv.gz 18203 CNV 9b63bdf49486b15b9d47da8f5750a31f C3L-06356.WGS.Tbm.hg38 7e9fdf55-4553-45ce-b272-d72a89ebeccd C3L-06356.WGS.Nbc.hg38 77636d17-c52a-44b3-9a13-5a4a0e06d660 f4c4e88c-6d59-47cb-a9a9-142b535ff361 +C3L-06356 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06356.case.gene_level.log2.seg.gz 301623 SEG cc5faf71d205c5663daffe85b0fbdeb2 C3L-06356.WGS.Tbm.hg38 7e9fdf55-4553-45ce-b272-d72a89ebeccd C3L-06356.WGS.Nbc.hg38 77636d17-c52a-44b3-9a13-5a4a0e06d660 f4c4e88c-6d59-47cb-a9a9-142b535ff361 +C3L-06357 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06357.case.cnv.gz 20018 CNV 23d50c2cda82341c503945d9dad94a50 C3L-06357.WGS.Tbm.hg38 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 C3L-06357.WGS.Nbc.hg38 0ae5fa74-35c4-400e-8946-969a354b3d0d 648d4ef8-ff97-4fad-897a-9e022835cf2c +C3L-06357 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06357.case.gene_level.log2.seg.gz 302959 SEG 4f877affa17ccb08ce77da9fe1804c9d C3L-06357.WGS.Tbm.hg38 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 C3L-06357.WGS.Nbc.hg38 0ae5fa74-35c4-400e-8946-969a354b3d0d 648d4ef8-ff97-4fad-897a-9e022835cf2c +C3L-06364 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06364.case.cnv.gz 23927 CNV c78e3ce577a2f06dd471db32d2956df7 C3L-06364.WGS.Tbm.hg38 d61d96da-f617-4d13-adae-d615f336047c C3L-06364.WGS.Nbc.hg38 04197309-7cc3-4385-a294-284c8c7e108d 714a1b22-019d-4ea8-a6b5-162c3bb30c0b +C3L-06364 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06364.case.gene_level.log2.seg.gz 304655 SEG 8222af3f5b4c5757e17d0619eacef12e C3L-06364.WGS.Tbm.hg38 d61d96da-f617-4d13-adae-d615f336047c C3L-06364.WGS.Nbc.hg38 04197309-7cc3-4385-a294-284c8c7e108d 714a1b22-019d-4ea8-a6b5-162c3bb30c0b +C3L-06367 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06367.case.cnv.gz 10340568 CNV a50ca791883d87e0fbf59eda14cdc516 C3L-06367.WGS.Tbm.hg38 4b683e0d-6960-41cb-99c1-ed1ab9efa601 C3L-06367.WGS.Nbc.hg38 d72473d5-e10f-4d2c-967b-af4c443685bd 8ac8559a-ab98-435c-af9f-bd3e33638e09 +C3L-06367 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06367.case.gene_level.log2.seg.gz 432595 SEG ff7a473117070d77118890493f6e08ba C3L-06367.WGS.Tbm.hg38 4b683e0d-6960-41cb-99c1-ed1ab9efa601 C3L-06367.WGS.Nbc.hg38 d72473d5-e10f-4d2c-967b-af4c443685bd 8ac8559a-ab98-435c-af9f-bd3e33638e09 +C3L-06369 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06369.case.cnv.gz 28008352 CNV 89ec2334a663c95b0b7a55d208b5a787 C3L-06369.WGS.Tbm.hg38 d93cf91b-6505-4604-90a9-1ed7919a25f7 C3L-06369.WGS.Nbc.hg38 d4778278-deab-47c4-8cad-3ad89a813df0 c5631ad8-31a6-4bd3-9e6e-37cb19432c60 +C3L-06369 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06369.case.gene_level.log2.seg.gz 461226 SEG 767b05aeb28f995594a3cb8957bdb93e C3L-06369.WGS.Tbm.hg38 d93cf91b-6505-4604-90a9-1ed7919a25f7 C3L-06369.WGS.Nbc.hg38 d4778278-deab-47c4-8cad-3ad89a813df0 c5631ad8-31a6-4bd3-9e6e-37cb19432c60 +C3L-06374 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06374.case.cnv.gz 26777 CNV c215c623f772d0035cbacf59e8b70d3e C3L-06374.WGS.Tbm.hg38 5a782fa9-d539-48e4-bdea-eee86f280403 C3L-06374.WGS.Nbc.hg38 1baab9c9-7a4f-40c9-9873-5fa78856e42e cbb1dd5b-1f08-4229-a102-42db61cb50ce +C3L-06374 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06374.case.gene_level.log2.seg.gz 302117 SEG 344c44080402f009ddf4a407801c8e55 C3L-06374.WGS.Tbm.hg38 5a782fa9-d539-48e4-bdea-eee86f280403 C3L-06374.WGS.Nbc.hg38 1baab9c9-7a4f-40c9-9873-5fa78856e42e cbb1dd5b-1f08-4229-a102-42db61cb50ce +C3L-06536 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06536.case.cnv.gz 47353 CNV 66109f14793a0592793e4819c074c447 C3L-06536.WGS.Tbm.hg38 0819a42c-0ec4-4c56-9085-a5cefa866e5c C3L-06536.WGS.Nbc.hg38 d3eb1159-4ed5-4b4b-afc7-3121c141a45f e2792cdb-b33a-44a2-8aa2-243a58d768bb +C3L-06536 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06536.case.gene_level.log2.seg.gz 303535 SEG f0cdfbc43244b93119888343bcc3fe1b C3L-06536.WGS.Tbm.hg38 0819a42c-0ec4-4c56-9085-a5cefa866e5c C3L-06536.WGS.Nbc.hg38 d3eb1159-4ed5-4b4b-afc7-3121c141a45f e2792cdb-b33a-44a2-8aa2-243a58d768bb +C3L-06537 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06537.case.cnv.gz 4024 CNV 40c5511c745a6404379ad7d4dd34f353 C3L-06537.WGS.Tbm.hg38 047b861d-0027-4d8e-94a9-319d18db7b84 C3L-06537.WGS.Nbc.hg38 64b40dfd-471f-4fa3-bd24-f9ea433e8283 463f263b-3e92-4ce3-b2a2-09e6dbca5725 +C3L-06537 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06537.case.gene_level.log2.seg.gz 295818 SEG 66fe36a5383aada6305d1f87d934a5a5 C3L-06537.WGS.Tbm.hg38 047b861d-0027-4d8e-94a9-319d18db7b84 C3L-06537.WGS.Nbc.hg38 64b40dfd-471f-4fa3-bd24-f9ea433e8283 463f263b-3e92-4ce3-b2a2-09e6dbca5725 +C3L-06539 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06539.case.cnv.gz 6588 CNV 12f0ce6bc8c7b27165d44ffb434abb2f C3L-06539.WGS.Tbm.hg38 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 C3L-06539.WGS.Nbc.hg38 472f4c29-feee-4101-9f40-24a10a33bcc3 cfc94c28-c347-4583-8690-08d016ebad38 +C3L-06539 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06539.case.gene_level.log2.seg.gz 295980 SEG 7a92f6a7286a94a556da32ee6c7d0234 C3L-06539.WGS.Tbm.hg38 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 C3L-06539.WGS.Nbc.hg38 472f4c29-feee-4101-9f40-24a10a33bcc3 cfc94c28-c347-4583-8690-08d016ebad38 +C3L-06540 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06540.case.cnv.gz 5101 CNV afe12faab1d39bdcd0f474284a13b257 C3L-06540.WGS.Tbm.hg38 6b58e6f7-133e-46d2-a78b-6d28408c9d3a C3L-06540.WGS.Nbc.hg38 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c f2305837-55d6-47ed-9059-0767e3167a14 +C3L-06540 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06540.case.gene_level.log2.seg.gz 296506 SEG 5d2596628fafdd7a0e48a87651405485 C3L-06540.WGS.Tbm.hg38 6b58e6f7-133e-46d2-a78b-6d28408c9d3a C3L-06540.WGS.Nbc.hg38 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c f2305837-55d6-47ed-9059-0767e3167a14 +C3L-06541 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06541.case.cnv.gz 15367 CNV 35cf125ab634b84bf0bb49032de1cee3 C3L-06541.WGS.Tbm.hg38 0d821410-5bac-4cc3-acbe-95fcda1364ea C3L-06541.WGS.Nbc.hg38 353c9734-73ad-4bed-86b7-524c2d79a4b5 1b2270d6-7344-46ef-bd48-1ae0168318a3 +C3L-06541 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06541.case.gene_level.log2.seg.gz 301418 SEG 72e84ccb1a9f4cff12c31fcc8b1b3ce0 C3L-06541.WGS.Tbm.hg38 0d821410-5bac-4cc3-acbe-95fcda1364ea C3L-06541.WGS.Nbc.hg38 353c9734-73ad-4bed-86b7-524c2d79a4b5 1b2270d6-7344-46ef-bd48-1ae0168318a3 +C3L-06542 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06542.case.cnv.gz 9231 CNV bbc5db8720e789f5b712e1cd168f2e39 C3L-06542.WGS.Tbm.hg38 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 C3L-06542.WGS.Nbc.hg38 1835d614-9a70-471e-8179-c103234cb687 5530d0fd-0803-48b1-9c23-35cab0816b12 +C3L-06542 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06542.case.gene_level.log2.seg.gz 298700 SEG 1ba849ff86eb6c9fdcdd09cde595e474 C3L-06542.WGS.Tbm.hg38 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 C3L-06542.WGS.Nbc.hg38 1835d614-9a70-471e-8179-c103234cb687 5530d0fd-0803-48b1-9c23-35cab0816b12 +C3L-06543 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06543.case.cnv.gz 4941 CNV 0310307c4ed99f8c89c23c65328f136b C3L-06543.WGS.Tbm.hg38 640af29c-4df0-4694-99a3-63b0820bf958 C3L-06543.WGS.Nbc.hg38 10a4b333-5ffd-439e-a55a-aa95ac06b469 addb54fc-c461-46b4-a523-43843b16b2e0 +C3L-06543 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06543.case.gene_level.log2.seg.gz 296528 SEG 0e0622d92331de4c0461a21aca89c1fe C3L-06543.WGS.Tbm.hg38 640af29c-4df0-4694-99a3-63b0820bf958 C3L-06543.WGS.Nbc.hg38 10a4b333-5ffd-439e-a55a-aa95ac06b469 addb54fc-c461-46b4-a523-43843b16b2e0 +C3L-06625 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06625.case.cnv.gz 5560 CNV d25f32b73464a5e8d2cbff0358e0ff61 C3L-06625.WGS.T.hg38 a7bd7fab-ba0d-43e2-9c92-ebbfb5d94cca C3L-06625.WGS.N.hg38 9d21e404-4a48-4eb3-8bee-66b811efd37e 316f5386-fef5-4821-9ed0-ffd5fe11634b +C3L-06625 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06625.case.gene_level.log2.seg.gz 296962 SEG f4120d2c82e6ef27731a489c65d043de C3L-06625.WGS.T.hg38 a7bd7fab-ba0d-43e2-9c92-ebbfb5d94cca C3L-06625.WGS.N.hg38 9d21e404-4a48-4eb3-8bee-66b811efd37e 316f5386-fef5-4821-9ed0-ffd5fe11634b +C3L-06801 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06801.case.cnv.gz 14301 CNV c0b2026afe661efe0b16c561f5d05250 C3L-06801.WGS.Tbm.hg38 c2325192-7bb3-4f7e-850b-1b1ccb80316b C3L-06801.WGS.Nbc.hg38 527e15dd-11c6-455b-bf87-8b24bc28b6e1 03382298-4d94-452b-a68c-ade33ac5fc67 +C3L-06801 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06801.case.gene_level.log2.seg.gz 299159 SEG ee71fcdf5887d5a0e5ef3ea6b8534952 C3L-06801.WGS.Tbm.hg38 c2325192-7bb3-4f7e-850b-1b1ccb80316b C3L-06801.WGS.Nbc.hg38 527e15dd-11c6-455b-bf87-8b24bc28b6e1 03382298-4d94-452b-a68c-ade33ac5fc67 +C3L-06803 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06803.case.cnv.gz 17261 CNV 93a99c4c57a59f517758237f40807cea C3L-06803.WGS.Tbm.hg38 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a C3L-06803.WGS.Nbc.hg38 887b6d76-aeda-4618-b395-4953f9f27201 2a7a5d74-8659-4d54-91fe-6f66a1d7ae10 +C3L-06803 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06803.case.gene_level.log2.seg.gz 299161 SEG 8c3ec0d772b9aa938a725d9148ecfd2c C3L-06803.WGS.Tbm.hg38 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a C3L-06803.WGS.Nbc.hg38 887b6d76-aeda-4618-b395-4953f9f27201 2a7a5d74-8659-4d54-91fe-6f66a1d7ae10 +C3L-06806 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06806.case.cnv.gz 11461 CNV 4fd3bcb10932795da38efba8c5ea4b89 C3L-06806.WGS.Tbm.hg38 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f C3L-06806.WGS.Nbc.hg38 0c557241-6ab1-42cb-b964-30c1cf2c62b2 5817eaf4-2777-4db1-bd89-08bf02cc3f25 +C3L-06806 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06806.case.gene_level.log2.seg.gz 298129 SEG 3ff2620ff0c4aff45e17253b7cf6f197 C3L-06806.WGS.Tbm.hg38 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f C3L-06806.WGS.Nbc.hg38 0c557241-6ab1-42cb-b964-30c1cf2c62b2 5817eaf4-2777-4db1-bd89-08bf02cc3f25 +C3L-06807 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06807.case.cnv.gz 13170 CNV f3ae611823073d4bbadf412d11ec2121 C3L-06807.WGS.Tbm.hg38 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 C3L-06807.WGS.Nbc.hg38 a5e65538-6337-4ca8-80e1-08d7f8916278 e359bd01-ca62-4d7b-b0cf-fe12cde56bba +C3L-06807 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06807.case.gene_level.log2.seg.gz 300560 SEG 9c37eb08032acfa85113d3e70b200323 C3L-06807.WGS.Tbm.hg38 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 C3L-06807.WGS.Nbc.hg38 a5e65538-6337-4ca8-80e1-08d7f8916278 e359bd01-ca62-4d7b-b0cf-fe12cde56bba +C3L-06809 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06809.case.cnv.gz 453727 CNV dbe3c90a6d88320569dc38c593c74897 C3L-06809.WGS.Tbm.hg38 d5f641bb-a84b-4cb2-932f-e25c73ef9081 C3L-06809.WGS.Nbc.hg38 57d26f1b-6ee3-425e-bab0-a006fab6ce90 114ef16c-0232-47ea-bbec-7e4675132e93 +C3L-06809 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06809.case.gene_level.log2.seg.gz 327111 SEG 7dce0c26b429b578b7f3f9ee63e31d29 C3L-06809.WGS.Tbm.hg38 d5f641bb-a84b-4cb2-932f-e25c73ef9081 C3L-06809.WGS.Nbc.hg38 57d26f1b-6ee3-425e-bab0-a006fab6ce90 114ef16c-0232-47ea-bbec-7e4675132e93 +C3L-06951 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06951.case.cnv.gz 20974 CNV 94e1c7fc64a3e92a8ed12fe819c146fb C3L-06951.WGS.Tbm.hg38 097d3f76-6044-4639-a353-cddbae861463 C3L-06951.WGS.Nbc.hg38 78899104-aff8-41cb-865c-bbcda214cde3 6bd2db22-2862-48de-a5e3-cd7b43be1abc +C3L-06951 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06951.case.gene_level.log2.seg.gz 300424 SEG 73bbd90d5d50aeb062e2fa21a1d3db7e C3L-06951.WGS.Tbm.hg38 097d3f76-6044-4639-a353-cddbae861463 C3L-06951.WGS.Nbc.hg38 78899104-aff8-41cb-865c-bbcda214cde3 6bd2db22-2862-48de-a5e3-cd7b43be1abc +C3L-06952 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06952.case.cnv.gz 52110 CNV 0dc4074b484853a9a1e247fb90348191 C3L-06952.WGS.Tbm.hg38 e786c669-ae8d-4f7e-9ff3-a8b674b81574 C3L-06952.WGS.Nbc.hg38 fe83e9be-7e7a-4295-906d-0317b2a405b5 dae6acd9-e595-4ac6-9716-5c2f0a90ba54 +C3L-06952 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06952.case.gene_level.log2.seg.gz 310094 SEG 10eaf10272824372ae5314a290db14ae C3L-06952.WGS.Tbm.hg38 e786c669-ae8d-4f7e-9ff3-a8b674b81574 C3L-06952.WGS.Nbc.hg38 fe83e9be-7e7a-4295-906d-0317b2a405b5 dae6acd9-e595-4ac6-9716-5c2f0a90ba54 +C3L-06953 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06953.case.cnv.gz 14958 CNV 1b396cb0358529ae2f3a09117853f502 C3L-06953.WGS.Tbm.hg38 02b919c1-e7df-495f-8084-65f8a1af6e45 C3L-06953.WGS.Nbc.hg38 afa8c524-60e7-423b-9677-8653c4a5da65 d75941d2-76d9-430c-bfad-4ab4f69d68fe +C3L-06953 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06953.case.gene_level.log2.seg.gz 299052 SEG 24e9a264260f7e866187847da9431e5b C3L-06953.WGS.Tbm.hg38 02b919c1-e7df-495f-8084-65f8a1af6e45 C3L-06953.WGS.Nbc.hg38 afa8c524-60e7-423b-9677-8653c4a5da65 d75941d2-76d9-430c-bfad-4ab4f69d68fe +C3L-06954 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06954.case.cnv.gz 102398 CNV 480363fdbc15b2c47b9b87337e05f926 C3L-06954.WGS.Tbm.hg38 4aec74c8-8469-4ab7-874e-cd559c14c396 C3L-06954.WGS.Nbc.hg38 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee 53b3c7df-a9f9-465d-b120-b318cda4cc42 +C3L-06954 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06954.case.gene_level.log2.seg.gz 318489 SEG 73a659c7262be9971ef72b7a079b3bf8 C3L-06954.WGS.Tbm.hg38 4aec74c8-8469-4ab7-874e-cd559c14c396 C3L-06954.WGS.Nbc.hg38 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee 53b3c7df-a9f9-465d-b120-b318cda4cc42 +C3L-06956 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06956.case.cnv.gz 84282 CNV 6184e4a8c981687f815f7595cef53fe7 C3L-06956.WGS.Tpb.hg38 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 C3L-06956.WGS.Nbc.hg38 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 28d6c85c-138e-44e7-b9d1-2691ee954988 +C3L-06956 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06956.case.gene_level.log2.seg.gz 308236 SEG e8b08370efcc5c67c99c05d98d99c342 C3L-06956.WGS.Tpb.hg38 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 C3L-06956.WGS.Nbc.hg38 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 28d6c85c-138e-44e7-b9d1-2691ee954988 +C3L-06960 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06960.case.cnv.gz 138955 CNV 979958bc02eb38bfa35078dcf9f6f755 C3L-06960.WGS.Tpb.hg38 71fada9d-8485-4d3a-bd18-413e4a5ccd49 C3L-06960.WGS.Nbc.hg38 829aaac7-f4bf-464c-8823-3a474e550f29 5e6a7624-19b0-4a54-bddd-d2820764380c +C3L-06960 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06960.case.gene_level.log2.seg.gz 312828 SEG 9d9fb385ef62b12bcc084b8bdb14a023 C3L-06960.WGS.Tpb.hg38 71fada9d-8485-4d3a-bd18-413e4a5ccd49 C3L-06960.WGS.Nbc.hg38 829aaac7-f4bf-464c-8823-3a474e550f29 5e6a7624-19b0-4a54-bddd-d2820764380c +C3L-06981 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06981.case.cnv.gz 5525 CNV e615eca82f30a975355bb0c72eb386f7 C3L-06981.WGS.Tpb.hg38 9ec0d8c2-3a7d-4579-b850-91811dc93dfd C3L-06981.WGS.Nbc.hg38 7ab67fa3-1ce9-4d82-920c-c2e87528b007 72cf0f06-ef7c-45f2-aa3d-c99a9d82ab59 +C3L-06981 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06981.case.gene_level.log2.seg.gz 296848 SEG c3031c0b5c4eb9d92824317bd464c83b C3L-06981.WGS.Tpb.hg38 9ec0d8c2-3a7d-4579-b850-91811dc93dfd C3L-06981.WGS.Nbc.hg38 7ab67fa3-1ce9-4d82-920c-c2e87528b007 72cf0f06-ef7c-45f2-aa3d-c99a9d82ab59 +C3L-06982 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06982.case.cnv.gz 22963 CNV a95ec44189c5808032b714ca9a938fc7 C3L-06982.WGS.Tpb.hg38 1bf7909e-23fb-418e-b3a8-957be0b608ba C3L-06982.WGS.Nbc.hg38 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 be3bfbf2-2a00-4924-8f2f-75afb7c8d37e +C3L-06982 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06982.case.gene_level.log2.seg.gz 305264 SEG 76e5a0488ef4d27af4c33469a65a8798 C3L-06982.WGS.Tpb.hg38 1bf7909e-23fb-418e-b3a8-957be0b608ba C3L-06982.WGS.Nbc.hg38 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 be3bfbf2-2a00-4924-8f2f-75afb7c8d37e +C3L-06983 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06983.case.cnv.gz 10991 CNV 91f2fc112c918a3e4dc592095b191a9f C3L-06983.WGS.Tpb.hg38 1e2921db-5243-4ee6-8d9b-07ecef59fa12 C3L-06983.WGS.Nbc.hg38 69d8818f-a69e-4afa-a106-5bcbeece0a49 abbccc09-2660-4f8d-97eb-7dc37d1993a8 +C3L-06983 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06983.case.gene_level.log2.seg.gz 299169 SEG 90a41672e67ee1ed175249151c048469 C3L-06983.WGS.Tpb.hg38 1e2921db-5243-4ee6-8d9b-07ecef59fa12 C3L-06983.WGS.Nbc.hg38 69d8818f-a69e-4afa-a106-5bcbeece0a49 abbccc09-2660-4f8d-97eb-7dc37d1993a8 +C3L-06984 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06984.case.cnv.gz 10443 CNV 25e90a4f423f6352fd25f8ec77e0fbb0 C3L-06984.WGS.Tpb.hg38 dc89ef04-c297-4432-a134-46486e9e8dcb C3L-06984.WGS.Nbc.hg38 65b123d9-9d59-4697-82bf-9db318649bb3 265d8305-459e-47f2-925a-784c9511d072 +C3L-06984 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-06984.case.gene_level.log2.seg.gz 297486 SEG fe2d91fc1716231c5f06e2bad341dfa9 C3L-06984.WGS.Tpb.hg38 dc89ef04-c297-4432-a134-46486e9e8dcb C3L-06984.WGS.Nbc.hg38 65b123d9-9d59-4697-82bf-9db318649bb3 265d8305-459e-47f2-925a-784c9511d072 +C3L-07013 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07013.case.cnv.gz 239039 CNV 182c96f7850c5f8ff95d514a80be5900 C3L-07013.WGS.Tbm.hg38 56965835-c74a-4372-9f42-4bb4fe46ae3a C3L-07013.WGS.Nbc.hg38 998c64c5-cac5-473d-a385-8c99522cf665 e9817f69-99e8-4796-a301-619be10b3c08 +C3L-07013 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07013.case.gene_level.log2.seg.gz 338520 SEG b1fb5aa3dc487c62f5140e87bcf7a410 C3L-07013.WGS.Tbm.hg38 56965835-c74a-4372-9f42-4bb4fe46ae3a C3L-07013.WGS.Nbc.hg38 998c64c5-cac5-473d-a385-8c99522cf665 e9817f69-99e8-4796-a301-619be10b3c08 +C3L-07202 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07202.case.cnv.gz 4944 CNV 613e69c21f23cef05e59dc0436a810cc C3L-07202.WGS.T.hg38 27664a4a-b413-4602-a67e-2f168c52e22a C3L-07202.WGS.N.hg38 e8e293fc-c8ca-4cc8-809a-18ff04d36c91 2ed60683-cdbe-4822-8a4f-afffa7bb055b +C3L-07202 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07202.case.gene_level.log2.seg.gz 296150 SEG cde04a43ee23a0a6687aa77ff23bd8cb C3L-07202.WGS.T.hg38 27664a4a-b413-4602-a67e-2f168c52e22a C3L-07202.WGS.N.hg38 e8e293fc-c8ca-4cc8-809a-18ff04d36c91 2ed60683-cdbe-4822-8a4f-afffa7bb055b +C3L-07213 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07213.case.cnv.gz 31318 CNV 9a4ce3deee2858e4ce9555cf99284713 C3L-07213.WGS.T.hg38 50f5310c-72b0-4d41-a8ce-6f4b370c351e C3L-07213.WGS.N.hg38 81f5956f-4df7-41d9-be6e-af59c628b6dd fc727c32-851a-4cc0-88b9-2316a6c4e42e +C3L-07213 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07213.case.gene_level.log2.seg.gz 304275 SEG 29dee668d7ea0de767074377e0d6f2c4 C3L-07213.WGS.T.hg38 50f5310c-72b0-4d41-a8ce-6f4b370c351e C3L-07213.WGS.N.hg38 81f5956f-4df7-41d9-be6e-af59c628b6dd fc727c32-851a-4cc0-88b9-2316a6c4e42e +C3L-07437 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07437.case.cnv.gz 6486 CNV 6ad690e238aba03572eabfe9397114de C3L-07437.WGS.Tpb.hg38 b8a63078-67cb-4929-afe2-4ab723ea9327 C3L-07437.WGS.Nbc.hg38 7f2b71bd-804b-4dbb-9d74-3539784d34e4 319f2548-8db8-42da-845e-e6e9a70b55ec +C3L-07437 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07437.case.gene_level.log2.seg.gz 296781 SEG e975e767c9566856fbacf6c4d6e06ca5 C3L-07437.WGS.Tpb.hg38 b8a63078-67cb-4929-afe2-4ab723ea9327 C3L-07437.WGS.Nbc.hg38 7f2b71bd-804b-4dbb-9d74-3539784d34e4 319f2548-8db8-42da-845e-e6e9a70b55ec +C3L-07439 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07439.case.cnv.gz 6261 CNV f5044c463f7a8519af720bbd864cfe23 C3L-07439.WGS.Tpb.hg38 e8607566-c0aa-40a6-9b90-263e0ab072b1 C3L-07439.WGS.Nbc.hg38 8f38803a-d993-4cf9-a78b-121bb76b10d0 b2efa071-efd9-43aa-bfe4-39f74627a755 +C3L-07439 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07439.case.gene_level.log2.seg.gz 297263 SEG 4ccac2e2b91d861ed87e690c6d02468b C3L-07439.WGS.Tpb.hg38 e8607566-c0aa-40a6-9b90-263e0ab072b1 C3L-07439.WGS.Nbc.hg38 8f38803a-d993-4cf9-a78b-121bb76b10d0 b2efa071-efd9-43aa-bfe4-39f74627a755 +C3L-07490 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07490.case.cnv.gz 162939 CNV f1d8a1c95095275aadae0cc17fb83bc4 C3L-07490.WGS.Tbm.hg38 036102b0-a019-45e8-b9db-ea99632f6ad5 C3L-07490.WGS.Nbc.hg38 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d fc393fe1-3354-4ff4-8242-e3362d487b20 +C3L-07490 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07490.case.gene_level.log2.seg.gz 323018 SEG 962acbe691943e6032612ce09e49d368 C3L-07490.WGS.Tbm.hg38 036102b0-a019-45e8-b9db-ea99632f6ad5 C3L-07490.WGS.Nbc.hg38 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d fc393fe1-3354-4ff4-8242-e3362d487b20 +C3L-07611 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07611.case.cnv.gz 2433 CNV abcdc67a05e1b434f69e7bd9f283d856 C3L-07611.WGS.T.hg38 c86ee9c9-faff-49f4-b731-53751cc80228 C3L-07611.WGS.N.hg38 0ef89055-e885-438d-9e05-f60f89725367 d420020b-9ae7-4564-8802-bfb7753a518b +C3L-07611 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3L-07611.case.gene_level.log2.seg.gz 294794 SEG e031bf1d64682a301eae08f75cacd55d C3L-07611.WGS.T.hg38 c86ee9c9-faff-49f4-b731-53751cc80228 C3L-07611.WGS.N.hg38 0ef89055-e885-438d-9e05-f60f89725367 d420020b-9ae7-4564-8802-bfb7753a518b C3N-00148 CCRCC WGS_CNV_Somatic v2.0 20190124 Y1 /CPTAC3_WashU_hg38/CCRCC/WGS_CNV_Somatic.CCRCC.all.hg38_v2.0_20190124/C3N-00148.cnv 6511 TSV 2b84b6f04fc2c6d3dbeb123611cb320d Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 CNV C3N-00148 CCRCC WGS_CNV_Somatic v2.0 20190124 Y1 /CPTAC3_WashU_hg38/CCRCC/WGS_CNV_Somatic.CCRCC.all.hg38_v2.0_20190124/C3N-00148.gene_level.log2.seg.gz 295890 TSV bb746a93f2de4967e8c064a289cb576a Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 SEG C3N-00148 CCRCC WGS_CNV_Somatic v2.0 20210310 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_CNV_Somatic_v2.0_CNV.CCRCC_ITH_20210310/C3N-00148.C3N-00148.WGS.T.HET_r6OkJK.hg38.cnv.gz 154493 TSV d0af2ae1d659f23f71b2fe6eb3676e97 C3N-00148.WGS.T.HET_r6OkJK.hg38 b106741d-59eb-42e6-b699-1d03231ca80b C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd CNV @@ -2968,6 +3236,12 @@ C3N-00647 CCRCC WGS_CNV_Somatic v2.0 20201009 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_C C3N-00647 CCRCC WGS_CNV_Somatic v2.0 20201009 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_CNV_Somatic_v2.0_Y3.620_20201009/C3N-00647.C3N-00647.gene_level.log2.seg.gz 294843 TSV 8c95bb94aad7e0835df455dcaea9a20e C3N-00647.WGS.T.hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f C3N-00647.WGS.N.hg38 aeef39b1-87b9-4242-af72-31c6a0d4682b SEG C3N-00647 CCRCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-00647.WGS.T.hg38.case.cnv.gz 2577 CNV 6ef2127f6ad331a16e8fbb6b9ddf31d7 C3N-00647.WGS.T.hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f C3N-00647.WGS.N.hg38 aeef39b1-87b9-4242-af72-31c6a0d4682b a5957eea-49a8-4552-a4c7-7c5c4b6b4001 C3N-00647 CCRCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-00647.WGS.T.hg38.case.gene_level.log2.seg.gz 294756 SEG 8a6ea6b3c319f5218f171612d56a7461 C3N-00647.WGS.T.hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f C3N-00647.WGS.N.hg38 aeef39b1-87b9-4242-af72-31c6a0d4682b a5957eea-49a8-4552-a4c7-7c5c4b6b4001 +C3N-00656 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00656.case.cnv.gz 6781 CNV a531e0783526db05d7b5eeb1cc348f9e C3N-00656.WGS.Tbm.hg38 c0204f8e-861d-4005-a7af-9a9f9cac802a C3N-00656.WGS.Nbc.hg38 71add2cb-73d9-4aa3-8025-8fc9a58267b4 d237722e-b07f-44cf-b504-d9306e419fee +C3N-00656 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00656.case.gene_level.log2.seg.gz 296632 SEG 79a3e6c7c2a47bc07b3363c68489f2bd C3N-00656.WGS.Tbm.hg38 c0204f8e-861d-4005-a7af-9a9f9cac802a C3N-00656.WGS.Nbc.hg38 71add2cb-73d9-4aa3-8025-8fc9a58267b4 d237722e-b07f-44cf-b504-d9306e419fee +C3N-00659 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00659.case.cnv.gz 14293 CNV b2b16915c4c2e4c834ff6c18eb42a4f1 C3N-00659.WGS.Tbm.hg38 6fca0608-132e-41e7-8103-0d121e45004d C3N-00659.WGS.Nbc.hg38 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 eb71fb10-0bcf-4f2c-a44a-63e5b1fa7ba4 +C3N-00659 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00659.case.gene_level.log2.seg.gz 299861 SEG 1e54a12dd5bab4f07e1a95a75f22a3d9 C3N-00659.WGS.Tbm.hg38 6fca0608-132e-41e7-8103-0d121e45004d C3N-00659.WGS.Nbc.hg38 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 eb71fb10-0bcf-4f2c-a44a-63e5b1fa7ba4 +C3N-00660 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00660.case.cnv.gz 35994 CNV 97a24623a0f56b72515692496b3b157a C3N-00660.WGS.Tbm.hg38 f6819867-14ed-436d-aaa6-e87e5ffce392 C3N-00660.WGS.Nbc.hg38 6d340b8f-1f8e-4c6a-91b1-dd502378d273 11f6aabd-9c88-4f20-84e3-02bf4b4fdc85 +C3N-00660 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00660.case.gene_level.log2.seg.gz 304905 SEG 675d078d7f72a56835c79614775c45c7 C3N-00660.WGS.Tbm.hg38 f6819867-14ed-436d-aaa6-e87e5ffce392 C3N-00660.WGS.Nbc.hg38 6d340b8f-1f8e-4c6a-91b1-dd502378d273 11f6aabd-9c88-4f20-84e3-02bf4b4fdc85 C3N-00661 GBM WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3N-00661.cnv.gz 8556 TSV ec156b0643f30da24068848f0c28155c C3N-00661.WGS.T.hg38 2fed7e32-d8c9-46cf-8ace-368ede492a80 C3N-00661.WGS.N.hg38 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f CNV C3N-00661 GBM WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3N-00661.gene_level.log2.seg.gz 296953 TSV 77a00768e5b252af5b1af028ef58d6b3 C3N-00661.WGS.T.hg38 2fed7e32-d8c9-46cf-8ace-368ede492a80 C3N-00661.WGS.N.hg38 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f SEG C3N-00661 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-00661.WGS.T.hg38.case.cnv.gz 8724 CNV d8d438467efc5e0d0c61a81f85e6cf84 C3N-00661.WGS.T.hg38 2fed7e32-d8c9-46cf-8ace-368ede492a80 C3N-00661.WGS.N.hg38 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f cd6476cc-d363-441d-8a14-d8c191263599 @@ -2984,6 +3258,12 @@ C3N-00665 GBM WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_W C3N-00665 GBM WGS_CNV_Somatic v2.0 20191121 Y3 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.0_WGS_CNV.20191121_20191121/C3N-00665.gene_level.log2.seg.gz 297246 TSV 571a2a5528bddc62a98be3696c68b057 C3N-00665.WGS.T.hg38 aabf00cc-4646-4c76-ba85-e71a9918937b C3N-00665.WGS.N.hg38 394b7faf-cc03-4e59-a36c-01fbfba7449c SEG C3N-00665 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-00665.WGS.T.hg38.case.cnv.gz 8830 CNV ff70d2bad1e4a4845679a3a4755bfae6 C3N-00665.WGS.T.hg38 aabf00cc-4646-4c76-ba85-e71a9918937b C3N-00665.WGS.N.hg38 394b7faf-cc03-4e59-a36c-01fbfba7449c b5a4416b-fbc4-4ce8-9724-9e57baba381c C3N-00665 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-00665.WGS.T.hg38.case.gene_level.log2.seg.gz 297322 SEG ebc499edd23493a92774314ecee03c0f C3N-00665.WGS.T.hg38 aabf00cc-4646-4c76-ba85-e71a9918937b C3N-00665.WGS.N.hg38 394b7faf-cc03-4e59-a36c-01fbfba7449c b5a4416b-fbc4-4ce8-9724-9e57baba381c +C3N-00681 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00681.case.cnv.gz 5944 CNV 9fda32f536b2d677eaa7750b8379c5d8 C3N-00681.WGS.Tbm.hg38 364841e8-4076-4d6b-be96-5a384877d20e C3N-00681.WGS.Nbc.hg38 fe2d050d-a92a-42e6-925c-669ac5a858c2 f5e090c9-49b4-4854-9f6b-63e5ea00457c +C3N-00681 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00681.case.gene_level.log2.seg.gz 297139 SEG 28a03baae718d832458bbd3e61b74fb0 C3N-00681.WGS.Tbm.hg38 364841e8-4076-4d6b-be96-5a384877d20e C3N-00681.WGS.Nbc.hg38 fe2d050d-a92a-42e6-925c-669ac5a858c2 f5e090c9-49b4-4854-9f6b-63e5ea00457c +C3N-00682 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00682.case.cnv.gz 7980 CNV 74ffaae9210aae88382187a3c5cf25d0 C3N-00682.WGS.Tbm.hg38 a9f6a226-2277-4b18-8c66-49821f0b9fc6 C3N-00682.WGS.Nbc.hg38 5c144d70-5a22-494a-95d5-184d07361a2d c2421757-d2f1-46dd-8f05-72e9a4def2f3 +C3N-00682 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00682.case.gene_level.log2.seg.gz 298369 SEG 1a280ab8d86faa4795dd18ed4366c22c C3N-00682.WGS.Tbm.hg38 a9f6a226-2277-4b18-8c66-49821f0b9fc6 C3N-00682.WGS.Nbc.hg38 5c144d70-5a22-494a-95d5-184d07361a2d c2421757-d2f1-46dd-8f05-72e9a4def2f3 +C3N-00689 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00689.case.cnv.gz 12277 CNV 66aa4569496625a6705e77a074aaccdf C3N-00689.WGS.Tbm.hg38 d67370bf-7944-4bb2-91a5-ada579ec1bdd C3N-00689.WGS.Nbc.hg38 878e413b-ef66-45a3-98c4-bc1c3dbf53cc af426479-4fa9-41e9-87f0-a9eb329ea764 +C3N-00689 AML WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-00689.case.gene_level.log2.seg.gz 299654 SEG 77c95bfcd6cef001dbc389536c37675e C3N-00689.WGS.Tbm.hg38 d67370bf-7944-4bb2-91a5-ada579ec1bdd C3N-00689.WGS.Nbc.hg38 878e413b-ef66-45a3-98c4-bc1c3dbf53cc af426479-4fa9-41e9-87f0-a9eb329ea764 C3N-00704 LUAD WGS_CNV_Somatic v2.0 20190121 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_CNV_Somatic.LUAD.all.hg38_v2.0_20190121/C3N-00704.cnv 11566 TSV 9398694bb524c1059e5602a5ee030acc Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 CNV C3N-00704 LUAD WGS_CNV_Somatic v2.0 20190121 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_CNV_Somatic.LUAD.all.hg38_v2.0_20190121/C3N-00704.gene_level.log2.seg.gz 297847 TSV 79da98201780b4d305db44cb81ca90c7 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 SEG C3N-00704 LUAD WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-00704.WGS.T.hg38.case.cnv.gz 6325 CNV 7f0b1b5d8d11c6e8ae90d8b997de47ea C3N-00704.WGS.T.hg38 96826950-6ed1-4823-9139-a25ac9973c6b C3N-00704.WGS.N.hg38 e2d7bb33-913f-4649-818d-ea17dec28c73 cb3f1f8a-2cd5-4c20-8e39-6c5308ba273b @@ -5180,6 +5460,8 @@ C3N-04100 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_W C3N-04100 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-04100.WGS.T.hg38.case.gene_level.log2.seg.gz 300086 SEG 717d00e6a5285af76ddd07f286ff47af C3N-04100.WGS.T.hg38 6655aea0-8f5c-4a62-813f-4afe372c81a3 C3N-04100.WGS.N.hg38 4d339a11-7fe1-4768-9bce-01c4d959a1b5 f014982f-46bb-490a-8601-3b57f605ce43 C3N-04113 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-04113.WGS.T.hg38.case.cnv.gz 21910 CNV 089da2deedacdd60c5b1b58bc8c44a96 C3N-04113.WGS.T.hg38 b4fdd133-7457-4a99-9621-b06aad5f7def C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff b32562da-a4d9-4446-9b46-e52233a1add3 C3N-04113 GBM WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-04113.WGS.T.hg38.case.gene_level.log2.seg.gz 303405 SEG 809d0190cb664e97c6d4b8c40f0670b8 C3N-04113.WGS.T.hg38 b4fdd133-7457-4a99-9621-b06aad5f7def C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff b32562da-a4d9-4446-9b46-e52233a1add3 +C3N-04113 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-04113.REP_7d56a3b1.case.cnv.gz 28938 CNV b7ce6bed30476e124e49e2d7488250d7 C3N-04113.REP_7d56a3b1.WGS.T.hg38 316589c0-c980-491c-85cb-ed6085aa0239 C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff 2df8aa47-8796-4462-850e-4f297451a527 +C3N-04113 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C3N-04113.REP_7d56a3b1.case.gene_level.log2.seg.gz 304605 SEG 3f8bc53cb09827a0ec45d358a0c9ebe1 C3N-04113.REP_7d56a3b1.WGS.T.hg38 316589c0-c980-491c-85cb-ed6085aa0239 C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff 2df8aa47-8796-4462-850e-4f297451a527 C3N-04119 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3N-04119.cnv.gz 69123 TSV e1619c5f0e1474df3eac4c15570a7373 C3N-04119.WGS.T.hg38 1becad3b-33c5-4bad-b7ee-20ee2603f398 C3N-04119.WGS.N.hg38 b8610c14-73e9-485b-9f23-36594cc52aaf CNV C3N-04119 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3N-04119.gene_level.log2.seg.gz 309081 TSV bea1dc60ec7bd4db35bde18afd6e31ca C3N-04119.WGS.T.hg38 1becad3b-33c5-4bad-b7ee-20ee2603f398 C3N-04119.WGS.N.hg38 b8610c14-73e9-485b-9f23-36594cc52aaf SEG C3N-04119 PDA WGS_CNV_Somatic v2.5 20211117 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.5_06.v2.5-update_20211117/C3N-04119.case.cnv.gz 25760 CNV bb756fc6093b18aaca44b2ec63c68ee0 C3N-04119.WGS.T.hg38 1becad3b-33c5-4bad-b7ee-20ee2603f398 C3N-04119.WGS.N.hg38 b8610c14-73e9-485b-9f23-36594cc52aaf 865df581-a349-427b-910c-8e62936fd55f @@ -5318,3 +5600,21 @@ C3N-05929 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSC C3N-05929 LSCC WGS_CNV_Somatic v2.5 20211014 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_CNV_Somatic_v2.5_WGS_CNV_Somatic.02_all_cases_rerun_20211014/C3N-05929.WGS.T.hg38.case.gene_level.log2.seg.gz 305257 SEG f240e5927883a9e9290412eaba5a5805 C3N-05929.WGS.T.hg38 c5d518a3-fc69-4d7b-a719-0aad38abe43a C3N-05929.WGS.N.hg38 823dda5b-ff15-4a66-b28b-de0632850623 7062be39-d36d-4558-a7da-7de95eb83184 C3N-05991 GBM WGS_CNV_Somatic v2.5 20211015 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_SomaticCNV.batch_1021_20211015/C3N-05991.case.cnv.gz 39854 CNV 670d1be9f57dc9b4d459f107170d7996 C3N-05991.WGS.T.hg38 050d8938-f282-41da-94a0-94fefe053d4e C3N-05991.WGS.N.hg38 39243f84-1aee-49d4-8a00-32c396a850f3 fb5a7439-e4fa-4691-a62c-20751c1b0601 C3N-05991 GBM WGS_CNV_Somatic v2.5 20211015 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_SomaticCNV.batch_1021_20211015/C3N-05991.case.gene_level.log2.seg.gz 306741 SEG 358e00af92bb66869db668dad3d92f5d C3N-05991.WGS.T.hg38 050d8938-f282-41da-94a0-94fefe053d4e C3N-05991.WGS.N.hg38 39243f84-1aee-49d4-8a00-32c396a850f3 fb5a7439-e4fa-4691-a62c-20751c1b0601 +C464694 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C464694.case.cnv.gz 385370 CNV d940de4c6ad87f6cb71e82ca5b73ea06 C464694.DUP_7319b796.WGS.T.hg38 77c6fb07-df6b-4048-a13a-4dd4df35c0e2 C464694.WGS.N.hg38 bd0412f4-6d85-4fde-a8da-4da9f281836f 8cba61da-e739-4689-81cb-6aa921c62c8f +C464694 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C464694.case.gene_level.log2.seg.gz 328984 SEG a52d1f8e962fb2e6793633a8c29acf40 C464694.DUP_7319b796.WGS.T.hg38 77c6fb07-df6b-4048-a13a-4dd4df35c0e2 C464694.WGS.N.hg38 bd0412f4-6d85-4fde-a8da-4da9f281836f 8cba61da-e739-4689-81cb-6aa921c62c8f +C524103 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C524103.case.cnv.gz 53922 CNV 43ed02a8bc3eacdd192b5750c4fb2a44 C524103.DUP_aee3de0f.WGS.T.hg38 a6ec178b-fa93-4486-9b6f-3d1f0392fa4e C524103.WGS.N.hg38 9e1d34a0-bb29-454f-846b-28c073c1adcf 7a46db9c-aa4a-42d6-8601-4a7cfe4c60db +C524103 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C524103.case.gene_level.log2.seg.gz 311564 SEG a57caee106546f11b2d0e579e15b5fc8 C524103.DUP_aee3de0f.WGS.T.hg38 a6ec178b-fa93-4486-9b6f-3d1f0392fa4e C524103.WGS.N.hg38 9e1d34a0-bb29-454f-846b-28c073c1adcf 7a46db9c-aa4a-42d6-8601-4a7cfe4c60db +C685110 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C685110.ALQ_eaaf51d6.case.cnv.gz 57642 CNV 77e09cdc8611f392229df195bcddb7f4 C685110.WGS.T.hg38 fbd79a73-b732-40ef-a0f4-958216263a3c C685110.WGS.N.hg38 e25543a2-1b16-473c-880f-e6958968eaa9 50f2d591-b3cd-48c2-8f40-b282bcc7ffa2 +C685110 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C685110.ALQ_eaaf51d6.case.gene_level.log2.seg.gz 312831 SEG 3a44f90ebe3584a512f0d6353ae149e9 C685110.WGS.T.hg38 fbd79a73-b732-40ef-a0f4-958216263a3c C685110.WGS.N.hg38 e25543a2-1b16-473c-880f-e6958968eaa9 50f2d591-b3cd-48c2-8f40-b282bcc7ffa2 +C685110 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C685110.DUP_224ab8cc.case.cnv.gz 52259 CNV e9240aea24d17bc2f802cbd9d75b69f1 C685110.DUP_224ab8cc.WGS.T.hg38 8f94f328-8cf9-41b8-b087-10e5793ddcb8 C685110.WGS.N.hg38 e25543a2-1b16-473c-880f-e6958968eaa9 699568be-18e7-4e7b-9087-d88a5070aabf +C685110 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C685110.DUP_224ab8cc.case.gene_level.log2.seg.gz 312042 SEG 9f746f83e8d177d0154a63ff6d2d06ca C685110.DUP_224ab8cc.WGS.T.hg38 8f94f328-8cf9-41b8-b087-10e5793ddcb8 C685110.WGS.N.hg38 e25543a2-1b16-473c-880f-e6958968eaa9 699568be-18e7-4e7b-9087-d88a5070aabf +C761370 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C761370.ALQ_2f414f12.case.cnv.gz 15932 CNV cef6edeac907753aee90981fa86dff94 C761370.WGS.T.hg38 f6231081-86d3-4b91-9b78-69de532a74ef C761370.WGS.N.hg38 8d798315-d251-4b30-9ae8-46eef4166aaf 1e9bb926-e891-4b5c-809a-255f9d131a30 +C761370 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C761370.ALQ_2f414f12.case.gene_level.log2.seg.gz 299202 SEG 8b53bf196151e1ff015fdd4bd1411fc6 C761370.WGS.T.hg38 f6231081-86d3-4b91-9b78-69de532a74ef C761370.WGS.N.hg38 8d798315-d251-4b30-9ae8-46eef4166aaf 1e9bb926-e891-4b5c-809a-255f9d131a30 +C761370 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C761370.DUP_260f1df4.case.cnv.gz 20359 CNV 3bcb1fe98bcd28d7f3aa1bafc04db251 C761370.DUP_260f1df4.WGS.T.hg38 f5979a9a-e1e5-4b1e-8a6d-971a8619cdb2 C761370.WGS.N.hg38 8d798315-d251-4b30-9ae8-46eef4166aaf da1875ea-e029-4742-b4e3-599e6159134a +C761370 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C761370.DUP_260f1df4.case.gene_level.log2.seg.gz 301165 SEG ee4403903e506552e863e623558ec721 C761370.DUP_260f1df4.WGS.T.hg38 f5979a9a-e1e5-4b1e-8a6d-971a8619cdb2 C761370.WGS.N.hg38 8d798315-d251-4b30-9ae8-46eef4166aaf da1875ea-e029-4742-b4e3-599e6159134a +C827913 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C827913.case.cnv.gz 453647 CNV a843b46c77a5a03bcc8a785e21b6466b C827913.WGS.T.hg38 7fa9454f-837a-4544-a1d8-091244567425 C827913.WGS.N.hg38 f261a842-13a0-46c7-a457-6044eb7312a9 f1ae39b7-a3d9-4bc5-9b0a-d1b683773efc +C827913 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C827913.case.gene_level.log2.seg.gz 370967 SEG fbcca1abca66070f3d6eb37e6e60998e C827913.WGS.T.hg38 7fa9454f-837a-4544-a1d8-091244567425 C827913.WGS.N.hg38 f261a842-13a0-46c7-a457-6044eb7312a9 f1ae39b7-a3d9-4bc5-9b0a-d1b683773efc +C846363 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C846363.ALQ_621fbd89.case.cnv.gz 11961 CNV a4e7fd5936ea50b20cfdc0e8bbfc9e71 C846363.WGS.T.hg38 0189a0e1-989c-4c4f-bac9-347ea63ce6d9 C846363.WGS.N.hg38 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 35ddfa21-a8f2-4cd5-a3a4-b0bf3556228c +C846363 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C846363.ALQ_621fbd89.case.gene_level.log2.seg.gz 299657 SEG ea2c624d4a194ddde132608996fbbef6 C846363.WGS.T.hg38 0189a0e1-989c-4c4f-bac9-347ea63ce6d9 C846363.WGS.N.hg38 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 35ddfa21-a8f2-4cd5-a3a4-b0bf3556228c +C846363 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C846363.DUP_51dcc4a3.case.cnv.gz 63728 CNV 893523e68dde55121d3a451dd95a0051 C846363.DUP_51dcc4a3.WGS.T.hg38 f5321ae8-799c-4684-9c96-c41090f687d0 C846363.WGS.N.hg38 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 94701fdf-60c6-401f-9658-9d43ba05466a +C846363 GBM WGS_CNV_Somatic v2.5 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_CNV_Somatic_v2.5_WGS_SV_CNV_20220904/C846363.DUP_51dcc4a3.case.gene_level.log2.seg.gz 309719 SEG 3ec5eed02c8ee4e5c655082f47b61517 C846363.DUP_51dcc4a3.WGS.T.hg38 f5321ae8-799c-4684-9c96-c41090f687d0 C846363.WGS.N.hg38 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 94701fdf-60c6-401f-9658-9d43ba05466a diff --git a/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat b/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat index 24f72ce..9e0726f 100644 --- a/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat +++ b/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat @@ -3,6 +3,36 @@ 11LU016 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/11LU016.SV.WGS.vcf 156501 VCF c33c41e6713be2ce1fec67a4693c751e Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 11LU022 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/11LU022.SV.WGS.vcf 161174 VCF 089824c9810e6485008410aede72da41 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 11LU035 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/11LU035.SV.WGS.vcf 147085 VCF 7fc0112a004dd9589155ec8975e3cce9 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 +C1230738 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C1230738.ALQ_2b9c5101.final.SV.WGS.vcf 180380 VCF f7ad846dcb9c25caba2518c10fc01c55 C1230738.WGS.T.hg38 4f59cd18-e160-40bc-b20f-d9b6d6b2a828 C1230738.WGS.N.hg38 91fdb084-280b-4301-a2dd-9ebd845f862c 2f23c9be-dcf0-4b90-948a-20b961331255 +C1230738 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C1230738.DUP_eb44394c.final.SV.WGS.vcf 175609 VCF 789f7053456bc67c8bdf4dc91bdb0990 C1230738.DUP_eb44394c.WGS.T.hg38 49344d55-2c3a-412b-910b-1faebfcea48d C1230738.WGS.N.hg38 91fdb084-280b-4301-a2dd-9ebd845f862c 4e6e72ce-cdb9-4f2e-a621-c5ae1604b092 +C1245129 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C1245129.ALQ_8f13fd02.final.SV.WGS.vcf 151192 VCF 4685239b7089505cf45e1574b82ca3d2 C1245129.WGS.T.hg38 c12354a1-3d98-4407-b4c3-17e3acf05bf4 C1245129.WGS.N.hg38 d016185e-cf6e-4b21-9841-554ef3d18e7a 4dc786de-ff13-4c1c-b1b5-dccedff2bfeb +C1245129 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C1245129.DUP_f4f0a623.final.SV.WGS.vcf 152716 VCF c46ed69bd4450c2600171fafcf687c0c C1245129.DUP_f4f0a623.WGS.T.hg38 f3c78e93-c869-4b25-b43b-eb115a89b242 C1245129.WGS.N.hg38 d016185e-cf6e-4b21-9841-554ef3d18e7a 8084e2b0-4204-435d-90ed-348165e325a2 +C204057 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C204057.ALQ_eb5da6ab.final.SV.WGS.vcf 213394 VCF 73bd766832db33f55067e3c16b34cc3a C204057.WGS.T.hg38 f1b9b874-d882-4b5b-9573-0bae4430d09b C204057.WGS.N.hg38 355b4d9c-302a-4ac1-a27f-8f6c38ab51b1 d3de7a28-aa0c-4e23-8130-b12257c7f258 +C204057 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C204057.DUP_fb79d37d.final.SV.WGS.vcf 215903 VCF 7e9f5e18159a6e6e2fd3a900d2ef37b2 C204057.DUP_fb79d37d.WGS.T.hg38 589369f6-0b4f-4252-87e1-bdc4aa0a235d C204057.WGS.N.hg38 355b4d9c-302a-4ac1-a27f-8f6c38ab51b1 702c9536-b031-4921-a98a-bbc6e328524f +C207624 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C207624.final.SV.WGS.vcf 160290 VCF 2f2c22e071b9b7b83f275460748b4704 C207624.DUP_8ab52100.WGS.T.hg38 4640f446-9179-43cd-b41c-5c5ef7251c59 C207624.WGS.N.hg38 60ee616b-34ea-4cb4-a7b9-ee547438873e ff548fa5-1957-4e93-aedd-81091e9b14e2 +C208854 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C208854.ALQ_92cbe1e0.final.SV.WGS.vcf 149617 VCF 6893ec3c4e7222f2dc1acd7e6ca1890e C208854.WGS.T.hg38 36aac09f-30e3-4464-a20e-33c90605fe83 C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb 54520142-bbb8-4ae2-a3d3-f950baa958dc +C208854 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C208854.DUP_15b44502.final.SV.WGS.vcf 166869 VCF 44169281ffde45ba3dda6398f15b5a34 C208854.DUP_15b44502.WGS.T.hg38 ce084882-0179-4eff-8700-3f917d1a9f5f C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb d3f29a2b-daa4-4d31-96eb-f71231ef82c5 +C208854 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C208854.DUP_93ae1041.final.SV.WGS.vcf 156600 VCF 1d039477f5bb448c4a915afd7e845465 C208854.DUP_93ae1041.WGS.T.hg38 a3290f46-6977-427f-8c5b-0f3f02d4e85f C208854.WGS.N.hg38 27863cbe-e9e0-42ff-9e34-06102194bfdb 1e0639ce-66ef-4266-90f3-400bd163d7b7 +C217710 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C217710.final.SV.WGS.vcf 148983 VCF bfb3aa015fcdbec5995d22f71719c60d C217710.DUP_e91fb26d.WGS.T.hg38 0c89d6fb-4969-4d9d-8d68-05a42e533868 C217710.WGS.N.hg38 8e4974c6-65c8-4808-ac4a-530f6da8f875 6fb7cf20-9529-42d7-b9eb-48266991279a +C219555 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C219555.final.SV.WGS.vcf 226403 VCF 3cef085025fd938b65114f6e0bddba92 C219555.WGS.T.hg38 6715f699-6a80-427d-b2c8-07a09f0682ca C219555.WGS.N.hg38 d2a01326-0fde-420b-8a11-23df57892a50 ac2633c4-4f19-4ac2-b22b-dd05c4920609 +C224106 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C224106.ALQ_65344b2f.final.SV.WGS.vcf 193784 VCF ebe4aa86e7af791db0d58525cf361fd6 C224106.WGS.T.hg38 4b8621c8-b515-46b2-be8b-6ae003ea0291 C224106.WGS.N.hg38 27b129be-59e4-45b6-a760-37f62e4febe4 904188fb-c84b-4699-9c64-960bd3e8859a +C224106 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C224106.DUP_4208c7cd.final.SV.WGS.vcf 196933 VCF a994b0cfdfaad293d5b679612edebf0a C224106.DUP_4208c7cd.WGS.T.hg38 0c382407-5002-43eb-832a-57e8a14d039e C224106.WGS.N.hg38 27b129be-59e4-45b6-a760-37f62e4febe4 5d8beb67-a6aa-4eaa-90bc-c39d4cb7a379 +C229764 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C229764.final.SV.WGS.vcf 174229 VCF 2fd96ab1ab7c0ee81a8ce04f5930dac8 C229764.WGS.T.hg38 91eeaff0-8519-4a8f-9860-bddad9f65edc C229764.WGS.N.hg38 3f00fbf7-325a-4da0-b5bc-307b35475f41 5371c38f-faee-4df2-85f8-1714bcb5aadc +C2415597 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C2415597.final.SV.WGS.vcf 181571 VCF 9a24c335452e7b594f27f5336c00adcc C2415597.DUP_6b347d64.WGS.T.hg38 80a726e3-4517-48d1-ae34-183300dc3541 C2415597.WGS.N.hg38 81a1a51b-92a2-4934-b3c7-21d141f6e0c3 dd683a31-e03c-4113-9551-7b0ffbe53742 +C243048 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C243048.ALQ_744835e4.final.SV.WGS.vcf 201290 VCF 88438d3c805e8688a8636c42d9edce6f C243048.WGS.T.hg38 e7f1591c-6ecb-4af1-a23d-5a38754f57b9 C243048.WGS.N.hg38 f5977d12-989d-4216-a674-474170a62e63 ab8392a5-7a1e-437b-8339-4563f36abb75 +C243048 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C243048.DUP_94a7b89d.final.SV.WGS.vcf 220980 VCF 04ee4541f6e48b7b4a9c6df4edb32d23 C243048.DUP_94a7b89d.WGS.T.hg38 fc5d3bd7-69e2-435f-b278-290e6237aa47 C243048.WGS.N.hg38 f5977d12-989d-4216-a674-474170a62e63 26d10819-6acf-436f-bfc2-8931e4b831fc +C247230 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C247230.final.SV.WGS.vcf 158922 VCF 65fa6194a60673f0b8a0042c939c4214 C247230.DUP_aa190bd.WGS.T.hg38 a32f7c17-1eca-4dcd-92e8-f5b8068d72e7 C247230.WGS.N.hg38 af1de814-a89b-4044-9f65-925fe40aaf42 da20863e-c1cb-4d4a-83cd-5056ff12eb73 +C259161 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C259161.ALQ_97e7e164.final.SV.WGS.vcf 166794 VCF 782e5de8aa038bff434b1d6e1e14fb24 C259161.WGS.T.hg38 389e91a8-3b5c-4d4a-9e58-7f45e2698503 C259161.WGS.N.hg38 957eecd3-4344-4afa-9bf2-b2af7d954a5e ce4a08c7-57f7-4085-a401-779c4ccc5da6 +C259161 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C259161.DUP_5c7e3295.final.SV.WGS.vcf 193825 VCF 434edc54e9ef11f8885227cf2aec9427 C259161.DUP_5c7e3295.WGS.T.hg38 88db0eef-aadc-4e7b-b6e9-20df18940bf3 C259161.WGS.N.hg38 957eecd3-4344-4afa-9bf2-b2af7d954a5e e45df43b-4bc2-41b6-ab7d-29b47ba6b7dd +C266664 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C266664.final.SV.WGS.vcf 244493 VCF 809686ed42ebdca9c3517d92311d80c2 C266664.DUP_5dbc58a2.WGS.T.hg38 e04b8d09-5776-4725-b3f5-db58cd62f8f6 C266664.WGS.N.hg38 f92426ea-9a03-45c1-bece-4af8fc16d4b0 d0743488-ebea-4019-86e8-43209b8a93aa +C283515 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C283515.final.SV.WGS.vcf 145143 VCF 692979cb338989edf2d11411ace81c6d C283515.DUP_16970afa.WGS.T.hg38 f01f616f-baae-41c6-bc30-d7baa888fca2 C283515.WGS.N.hg38 64ff8172-9477-49e2-aab6-53ed112aa73c 0d67c227-231e-4ad5-9665-298cf04296bd +C289419 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C289419.ALQ_24f84cd9.final.SV.WGS.vcf 194185 VCF 08a2a8c211f4da3a6f11c091d4924465 C289419.WGS.T.hg38 66088cb3-52d4-4923-80d8-c9f6467076ab C289419.WGS.N.hg38 3206bc3b-648f-40f0-90d4-3914a2173ae6 ed6e803d-bfdd-47ca-80d9-44cff0493e8e +C289419 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C289419.DUP_ebf29e44.final.SV.WGS.vcf 192554 VCF ce2af08d66dd1dc357b0c5a171b292a5 C289419.DUP_ebf29e44.WGS.T.hg38 87df8153-1621-45ef-84f6-475e6b344c45 C289419.WGS.N.hg38 3206bc3b-648f-40f0-90d4-3914a2173ae6 a7f31bb1-eee2-4e36-8804-180faeba097d +C298152 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C298152.ALQ_7f0197e6.final.SV.WGS.vcf 185169 VCF a4eeb6563ceb439cdbd1105cf3d74a91 C298152.WGS.T.hg38 32e43bb8-4fb5-4435-99b0-f09f6f817dd0 C298152.WGS.N.hg38 d58f2823-1d0b-4d87-a8cf-60d3880cad66 aafad956-1153-4839-a749-ec4493705aa0 +C298152 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C298152.DUP_cb6d6363.final.SV.WGS.vcf 206267 VCF 488f26997342696fbef06fccd27e721e C298152.DUP_cb6d6363.WGS.T.hg38 fddc2fe2-8b91-4754-bf9c-cb63b03f66ae C298152.WGS.N.hg38 d58f2823-1d0b-4d87-a8cf-60d3880cad66 3d7cab70-716f-45bf-a7fb-481fdd5433ac +C317832 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C317832.ALQ_5cfa9604.final.SV.WGS.vcf 162286 VCF df8960d66bbe5ae682a036619c212851 C317832.WGS.T.hg38 6c345d12-741e-4e98-abfd-337cc774d958 C317832.WGS.N.hg38 0fa25367-cd71-4bee-a9ce-c0487935bf1a 52e85e46-b1f8-4fed-b20f-476550352095 +C317832 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C317832.DUP_4b7f0398.final.SV.WGS.vcf 170156 VCF 327570f993cc1b06b038c148ec6b29a9 C317832.DUP_4b7f0398.WGS.T.hg38 90d89778-ba90-4096-b585-894a2c7a81f2 C317832.WGS.N.hg38 0fa25367-cd71-4bee-a9ce-c0487935bf1a 9ca83a82-4859-40ec-be34-0ab0bdd52af7 +C330255 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C330255.final.SV.WGS.vcf 163469 VCF f6b1886ffd5aee8bd4fa9d9fd03bfb94 C330255.WGS.T.hg38 e809e615-2a38-4ebb-bb20-51d162b52ce6 C330255.WGS.N.hg38 417d7c29-a3f8-4a79-b384-d053f4b7051f 8f83a6ef-60cb-4af6-b8b6-e4268056bb2a C3L-00001 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/C3L-00001.SV.WGS.vcf 167210 VCF b066cba1b5f34bb3d0518c7dab1574d3 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 C3L-00004 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3L-00004.evidence_0.1561b97d-8c8f-4fe6-a244-06452760074d_gdc_realn.bam 132226505 BAM dff66c9cf968a30a1155662d3d37b1b4 C3L-00004.WGS.T.hg38 d3c54309-50b1-4257-8e90-4536dd45efe1 C3L-00004.WGS.N.hg38 22a34772-76b0-4cab-af6f-43472bb74199 3fd9fa85-5b1b-43e9-a6e6-b44a45b47f75 C3L-00004 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3L-00004.evidence_1.82ccdf4e-4527-47ca-8151-7e1248f1da09_gdc_realn.bam 128205398 BAM 8b001eb266b5ca2f850297325b3b6d41 C3L-00004.WGS.T.hg38 d3c54309-50b1-4257-8e90-4536dd45efe1 C3L-00004.WGS.N.hg38 22a34772-76b0-4cab-af6f-43472bb74199 3fd9fa85-5b1b-43e9-a6e6-b44a45b47f75 @@ -287,6 +317,7 @@ C3L-00610 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_ C3L-00614 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-00614.evidence_0.982cbe51-15db-4db8-a0d3-fbedac2e1964_wgs_gdc_realn.bam 49523822 BAM d54aa6c485a80a340f9c9f89b861e727 C3L-00614.WGS.Tpb.hg38 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 C3L-00614.WGS.Nbc.hg38 a8b1aad9-afac-494b-a513-91889fe8be96 2f312a58-dd19-47d8-881c-554b1aa97e1b C3L-00614 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-00614.evidence_1.d7f7dd24-3343-4822-9866-9fe2e596e709_wgs_gdc_realn.bam 50803555 BAM 1d190773e6013f592fbda30dd627b4e5 C3L-00614.WGS.Tpb.hg38 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 C3L-00614.WGS.Nbc.hg38 a8b1aad9-afac-494b-a513-91889fe8be96 2f312a58-dd19-47d8-881c-554b1aa97e1b C3L-00614 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-00614.final.SV.WGS.vcf 149160 VCF 269ca8983d0237fc4710bcca44e12ddf C3L-00614.WGS.Tpb.hg38 bf93279a-b4a9-4d9c-b217-b5d5fc9db592 C3L-00614.WGS.Nbc.hg38 a8b1aad9-afac-494b-a513-91889fe8be96 2f312a58-dd19-47d8-881c-554b1aa97e1b +C3L-00617 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-00617.final.SV.WGS.vcf 170778 VCF 3fa4645a601645ace213af1592a9acd8 C3L-00617.WGS.Tbm.hg38 98eaebef-92a8-4da4-96f8-21ef7564d427 C3L-00617.WGS.Nbc.hg38 4fe3fee3-b27e-4159-9dc8-088f09e974f5 5da5dd58-a1af-45f9-a57e-1ba4aeb93ecf C3L-00622 PDA WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.0_Y2.b2_20190529/C3L-00622.final.SV.WGS.vcf.gz 19071 VCF 49cd5c35af817520b7d719f6781848dc C3L-00622.WGS.T.hg38 086ec943-b53a-4ccd-9594-bb20d5535f9b C3L-00622.WGS.N.hg38 286cd6a8-1673-4386-90d5-551bf89e2b6f C3L-00625 PDA WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.0_Y2.b2_20190529/C3L-00625.final.SV.WGS.vcf.gz 19404 VCF 50244b094e48af5382f25b5f29aba620 C3L-00625.WGS.T.hg38 9a5c7c77-02ed-4bf2-bf16-f08947fabadd C3L-00625.WGS.N.hg38 acb673c1-1691-4dc0-87df-c45130643e4f C3L-00631 GBM WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.0_Y2.b2_20190529/C3L-00631.final.SV.WGS.vcf.gz 22755 VCF b006c01bb2ceda321c1bd25f81c63834 C3L-00631.WGS.T.hg38 0985e93c-fecd-4821-8010-7f7977332cbc C3L-00631.WGS.N.hg38 7c125c1d-248b-4df3-a9f8-83a889bd5d56 @@ -541,6 +572,8 @@ C3L-01160 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1. C3L-01160 PDA WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3L-01160.evidence_0.07384100-195f-4071-a266-1ba880b66180_wgs_gdc_realn.bam 44717247 BAM c337c2fdaaba673780068a24c51dd82b C3L-01160.WGS.T.CORE_ERRmwz0.hg38.core 1000b82e-99a4-4743-90b4-625b6dc12984 C3L-01160.WGS.N.hg38 159ed349-6664-4f63-a807-2c0ec490012b 4e3b0b38-e119-436f-a6cf-17aa71b90891 C3L-01160 PDA WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3L-01160.evidence_1.a8c4506f-92ba-4202-9c7b-ad08ebfb3b64_wgs_gdc_realn.bam 41268549 BAM 7067350be8e6892532d7900a6c81e82c C3L-01160.WGS.T.CORE_ERRmwz0.hg38.core 1000b82e-99a4-4743-90b4-625b6dc12984 C3L-01160.WGS.N.hg38 159ed349-6664-4f63-a807-2c0ec490012b 4e3b0b38-e119-436f-a6cf-17aa71b90891 C3L-01160 PDA WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3L-01160.final.SV.WGS.vcf 150549 VCF 9d9da1596d24df528151b43fa570c9ab C3L-01160.WGS.T.CORE_ERRmwz0.hg38.core 1000b82e-99a4-4743-90b4-625b6dc12984 C3L-01160.WGS.N.hg38 159ed349-6664-4f63-a807-2c0ec490012b 4e3b0b38-e119-436f-a6cf-17aa71b90891 +C3L-01182 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-01182.final.SV.WGS.vcf 212064 VCF a951901c8084643f73464d0bc4e61c5c C3L-01182.WGS.Tpb.hg38 9203d3b3-eb05-4923-989d-1c8abb8a42ea C3L-01182.WGS.Nbc.hg38 d7132b30-16af-41cd-a0be-7ed4971b0d12 74e666cf-8fcd-4f50-a4a7-3e735cefe37d +C3L-01188 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-01188.final.SV.WGS.vcf 145659 VCF f6e65dd9515a45b82b6c5c4137a491b5 C3L-01188.WGS.Tbm.hg38 443d5fcc-56db-4bb1-8765-0b2ae5399577 C3L-01188.WGS.Nbc.hg38 f50beef2-41e8-4cab-828a-3d2adc6d21eb c1640589-43a6-4cb5-94c4-76b354d5a32d C3L-01202 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-01202.evidence_0.1bb452c0-b720-4f49-a565-b4aae0d35af8_wgs_gdc_realn.bam 31734520 BAM 6b25650141473a9a6a399423c71f39ff C3L-01202.WGS.Tbm.hg38 c4e035b2-76ee-4d67-843d-1f18990e3bb1 C3L-01202.WGS.Nbc.hg38 dc06e74b-457a-466a-96eb-bae0b949c050 2891ae60-d306-4476-8d14-eec37c9a18ca C3L-01202 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-01202.evidence_1.eea66d9d-5e3f-4738-9bde-970a7b4c5365_wgs_gdc_realn.bam 39038102 BAM 944dc6e12d0873ae86829043bdbec900 C3L-01202.WGS.Tbm.hg38 c4e035b2-76ee-4d67-843d-1f18990e3bb1 C3L-01202.WGS.Nbc.hg38 dc06e74b-457a-466a-96eb-bae0b949c050 2891ae60-d306-4476-8d14-eec37c9a18ca C3L-01202 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-01202.final.SV.WGS.vcf 146896 VCF 645187a94a51a80d8e848d6131b11252 C3L-01202.WGS.Tbm.hg38 c4e035b2-76ee-4d67-843d-1f18990e3bb1 C3L-01202.WGS.Nbc.hg38 dc06e74b-457a-466a-96eb-bae0b949c050 2891ae60-d306-4476-8d14-eec37c9a18ca @@ -657,6 +690,9 @@ C3L-01352 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_ C3L-01352 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3L-01352.evidence_1.01390bfe-15c8-4608-9785-7f9d51990f6c_gdc_realn.bam 48653762 BAM 539f0edeccb2580e11f8215735c2571e C3L-01352.WGS.T.hg38 dcf55fde-e9f3-4ccd-9971-e97570a1d43e C3L-01352.WGS.N.hg38 e1794f91-7fab-4a26-a71f-500a69109dd8 1f084809-17dd-4c2a-9db6-5e1a6df004e1 C3L-01352 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3L-01352.final.SV.WGS.vcf 146752 VCF 46b06928a3a4d2167075ebe1fa8e9510 C3L-01352.WGS.T.hg38 dcf55fde-e9f3-4ccd-9971-e97570a1d43e C3L-01352.WGS.N.hg38 e1794f91-7fab-4a26-a71f-500a69109dd8 1f084809-17dd-4c2a-9db6-5e1a6df004e1 C3L-01355 UCEC WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.0_Y2.b2_20190529/C3L-01355.final.SV.WGS.vcf.gz 18679 VCF 6e236aee65fee3d0902f5201dd6ed079 C3L-01355.WGS.T.hg38 c6e73847-d928-4be5-9688-e38ae6742870 C3L-01355.WGS.N.hg38 c683c8b1-6683-46a0-b7a3-43c153a8ef5c +C3L-01425 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-01425.final.SV.WGS.vcf 152289 VCF 0d3e888f34ff472333cdfcb51809dba7 C3L-01425.WGS.Tbm.hg38 3634e8ee-419e-422b-a492-b63f07b3840a C3L-01425.WGS.Nbc.hg38 3289b16b-0383-4ece-914c-5ae5fa903955 2410f92f-3114-4e08-8fea-cc52b366a9f8 +C3L-01426 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-01426.final.SV.WGS.vcf 152842 VCF c1036446b5cce06f554d38675483b02c C3L-01426.WGS.Tpb.hg38 600534ec-3fd0-420d-9d39-45bf59abea96 C3L-01426.WGS.Nbc.hg38 d6162a5c-7200-4643-ad34-2f17276ad642 1cb63e82-057a-4b92-b2f9-f0928b66b568 +C3L-01427 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-01427.final.SV.WGS.vcf 149963 VCF 7fa67411614d0c3f50049ee080955254 C3L-01427.WGS.Tpb.hg38 4e6e8a93-e0e6-4259-9227-345d4526b521 C3L-01427.WGS.Nbc.hg38 769c53ae-858c-4c6f-b0b5-4733b5d3be14 fd4fb2f3-85a5-4f18-a137-e7db39b04258 C3L-01453 PDA WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.0_Y2.b2_20190529/C3L-01453.final.SV.WGS.vcf.gz 20141 VCF cd44617007519de12daff7a93908537f C3L-01453.WGS.T.hg38 18f0a656-615a-417e-92b1-953fbfd4afd6 C3L-01453.WGS.N.hg38 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d C3L-01455 LSCC WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.0_Y2.b1_20190405/C3L-01455.final.SV.WGS.vcf 155895 VCF 8d044931c61977505f4c6b1350b820d0 C3L-01455.WGS.T.hg38 a33c1944-3a5b-4f48-a24f-2e23328932ef C3L-01455.WGS.N.hg38 2166ea32-e285-4f46-babf-70f7c19fea16 C3L-01458 CCRCC WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3L-01458.evidence_0.d6925774-b5fa-4272-8e37-e92825c5af19_wgs_gdc_realn.bam 54436274 BAM c836a986f369508364982be7a4c4083a C3L-01458.WGS.T.hg38 01a2640e-f288-4711-b415-7ad5dbbdc94e C3L-01458.WGS.N.hg38 2e2868ab-fdbf-44d2-a472-a0ca6a1cbc48 3acacb88-d4c9-466b-96d5-ff54712793ba @@ -759,6 +795,7 @@ C3L-01682 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1- C3L-01683 LUAD WGS_SV v0.1.2 20181218 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b56.hb2.hg38_v1.2_20181218/C3L-01683.SV.WGS.vcf 144320 VCF f6af62ae9813409b6719c65241c25765 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 C3L-01687 PDA WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.0_Y2.b2_20190529/C3L-01687.final.SV.WGS.vcf.gz 20004 VCF 44ad9cf38878cc66c397af4ea8452032 C3L-01687.WGS.T.hg38 fb2c5c36-3522-435b-956e-5a141c175fa8 C3L-01687.WGS.N.hg38 1f705ea1-bfc3-4ef4-9471-861e4105d2cd C3L-01689 PDA WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.0_Y2.b2_20190529/C3L-01689.final.SV.WGS.vcf.gz 20754 VCF 11a86ad02a304495389544c9391ac51d C3L-01689.WGS.T.hg38 7e8efdd4-7fad-4e46-aa74-5e1bf4b2f149 C3L-01689.WGS.N.hg38 e39d2edb-7a85-49c1-bafd-9ed460b73941 +C3L-01694 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-01694.final.SV.WGS.vcf 146320 VCF b517dbbb7b86d7a9f62754e33526f683 C3L-01694.WGS.Tpb.hg38 98a43f31-aa70-4a90-aad4-4f12a5fad7ab C3L-01694.WGS.Nbc.hg38 f0e9d729-028a-44d1-938a-8c48e13b96da ca1253f0-be71-42e9-aff7-82b08efe009f C3L-01696 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-01696.evidence_0.a1ab108e-f673-4cce-862e-77fa87d4a4f5_wgs_gdc_realn.bam 409040 BAM faeee5ace1471ac4f081df1d679a5103 C3L-01696.WGS.Tbm.hg38 30772786-a9c8-40f0-b5c8-1853d6bd440b C3L-01696.WGS.Nbc.hg38 19666272-672e-45f8-98e1-10baefb2e231 6d5d6c10-eb4c-4f2e-9133-66d7c785fcdf C3L-01696 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-01696.evidence_1.eeae1365-1d8d-4397-b2ba-bf7aae4883ae_wgs_gdc_realn.bam 54815666 BAM e3834950a3e5dea137e9132182bf7bd0 C3L-01696.WGS.Tbm.hg38 30772786-a9c8-40f0-b5c8-1853d6bd440b C3L-01696.WGS.Nbc.hg38 19666272-672e-45f8-98e1-10baefb2e231 6d5d6c10-eb4c-4f2e-9133-66d7c785fcdf C3L-01696 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-01696.final.SV.WGS.vcf 145272 VCF 80db0d07fb5799c9550e3bb6d88df750 C3L-01696.WGS.Tbm.hg38 30772786-a9c8-40f0-b5c8-1853d6bd440b C3L-01696.WGS.Nbc.hg38 19666272-672e-45f8-98e1-10baefb2e231 6d5d6c10-eb4c-4f2e-9133-66d7c785fcdf @@ -1114,6 +1151,7 @@ C3L-02746 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_ C3L-02747 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02747.evidence_0.9b229a65-285d-4818-9b93-380fc9891fbb_wgs_gdc_realn.bam 48810376 BAM da0185910f454b8e0d637a32de7e0d02 C3L-02747.WGS.T.hg38 1894bbde-fb66-4ab5-9676-95a28fb8225b C3L-02747.WGS.N.hg38 ca6433d5-5901-4360-a0cc-be3613506b88 a909c6d4-3b41-45b7-b7c1-257877366432 C3L-02747 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02747.evidence_1.d698845e-1220-41d8-bf5d-7363a5df2d14_wgs_gdc_realn.bam 59479240 BAM 67603504a72aa7a9240afe001df0a200 C3L-02747.WGS.T.hg38 1894bbde-fb66-4ab5-9676-95a28fb8225b C3L-02747.WGS.N.hg38 ca6433d5-5901-4360-a0cc-be3613506b88 a909c6d4-3b41-45b7-b7c1-257877366432 C3L-02747 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02747.final.SV.WGS.vcf 147811 VCF 99df6c31aba9692fb2c1eecb943fb01b C3L-02747.WGS.T.hg38 1894bbde-fb66-4ab5-9676-95a28fb8225b C3L-02747.WGS.N.hg38 ca6433d5-5901-4360-a0cc-be3613506b88 a909c6d4-3b41-45b7-b7c1-257877366432 +C3L-02779 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-02779.final.SV.WGS.vcf 150666 VCF 331484972a0d7b64977eca5dd8325c2c C3L-02779.WGS.Tpb.hg38 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e C3L-02779.WGS.Nbc.hg38 15c037cc-7c13-4563-aebd-cf963b3cb3e8 81210539-1e9e-4d4d-a915-908386e2ae7a C3L-02800 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02800.evidence_0.abea41ce-f548-4b59-94df-c25ea1a3d80b_wgs_gdc_realn.bam 54625717 BAM ef552ba7629f89abfd12a5f034098c03 C3L-02800.WGS.T.hg38 3017d721-58f9-4818-b2cc-4a25a5869caa C3L-02800.WGS.N.hg38 0f97e2fd-22e2-4ae6-9129-26647af4cb04 e453b823-1cbc-47ae-aed0-19ba064323cc C3L-02800 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02800.evidence_1.aeb5e654-0b85-4347-a109-e0312b7778a4_wgs_gdc_realn.bam 47297008 BAM 3659a372871072236f186b87ccb0135b C3L-02800.WGS.T.hg38 3017d721-58f9-4818-b2cc-4a25a5869caa C3L-02800.WGS.N.hg38 0f97e2fd-22e2-4ae6-9129-26647af4cb04 e453b823-1cbc-47ae-aed0-19ba064323cc C3L-02800 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02800.final.SV.WGS.vcf 145538 VCF dd182ad296a7afaecaee1cfe4e3c2a9e C3L-02800.WGS.T.hg38 3017d721-58f9-4818-b2cc-4a25a5869caa C3L-02800.WGS.N.hg38 0f97e2fd-22e2-4ae6-9129-26647af4cb04 e453b823-1cbc-47ae-aed0-19ba064323cc @@ -1215,6 +1253,7 @@ C3L-03271 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3L-03271 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03271.evidence_1.ce89aed6-750b-4d18-8f28-d4940dc0b546_wgs_gdc_realn.bam 37414249 BAM 325bf89a595a0d5536304dfc6614ecfb C3L-03271.WGS.T.hg38 2f96c07e-aa95-4164-8293-c59b1866b6aa C3L-03271.WGS.N.hg38 1699c142-456b-460d-8ae0-7c8eddbb1d4d 1e85f0e6-44d7-460f-b260-007b21d89b51 C3L-03271 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03271.final.SV.WGS.vcf 150611 VCF 62c249e5286d632b5b712b468c765e52 C3L-03271.WGS.T.hg38 2f96c07e-aa95-4164-8293-c59b1866b6aa C3L-03271.WGS.N.hg38 1699c142-456b-460d-8ae0-7c8eddbb1d4d 1e85f0e6-44d7-460f-b260-007b21d89b51 C3L-03272 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-03272.final.SV.WGS.vcf 155687 VCF 0234b40da1ff310449075713165fe061 C3L-03272.WGS.T.hg38 72f758cf-917a-4a95-b714-d422e6c58128 C3L-03272.WGS.N.hg38 34b966ea-7310-4aad-ab2f-3abbff502e84 +C3L-03303 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-03303.final.SV.WGS.vcf 153064 VCF 4ffb484b0eb111f3f23663fda1ffd38f C3L-03303.WGS.Tpb.hg38 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 C3L-03303.WGS.Nbc.hg38 5d5ffeab-8fde-4425-b4c2-709184c3574e 912a12a9-d0d6-42d1-b18d-0a471d3d9d53 C3L-03308 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-03308.evidence_0.d3e20335-9964-459f-b475-7572352452cc_wgs_gdc_realn.bam 133927 BAM 7ed27b82bf3bfe0d804205ca187d47b2 C3L-03308.WGS.Tbm.hg38 0853efaa-8886-4b5c-96ce-547b63abbc8f C3L-03308.WGS.Nbc.hg38 443cebb5-a542-4866-9e67-df805b839012 6a78dfdf-0330-410e-8b4c-cd1bb9baa7e3 C3L-03308 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-03308.evidence_1.1489dd25-8419-4035-b058-cbd0c1d93caf_wgs_gdc_realn.bam 159023 BAM a059e5eae96153d42f1db9c24b63bd5f C3L-03308.WGS.Tbm.hg38 0853efaa-8886-4b5c-96ce-547b63abbc8f C3L-03308.WGS.Nbc.hg38 443cebb5-a542-4866-9e67-df805b839012 6a78dfdf-0330-410e-8b4c-cd1bb9baa7e3 C3L-03308 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-03308.final.SV.WGS.vcf 143716 VCF a40d90a90cac9f86b1eecaedd9ee7f64 C3L-03308.WGS.Tbm.hg38 0853efaa-8886-4b5c-96ce-547b63abbc8f C3L-03308.WGS.Nbc.hg38 443cebb5-a542-4866-9e67-df805b839012 6a78dfdf-0330-410e-8b4c-cd1bb9baa7e3 @@ -1270,6 +1309,9 @@ C3L-03496 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1. C3L-03497 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-03497.evidence_0.bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wgs_gdc_realn.bam 357706 BAM cd54fcd17ab9b854c696e6b1872f6119 C3L-03497.WGS.Tbm.hg38 819a71b8-b34d-42de-9fff-e1c948a5ea18 C3L-03497.WGS.Nbc.hg38 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 3a7b9705-99b2-44fe-863f-65fddd6ca6e0 C3L-03497 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-03497.evidence_1.450e4b1c-4c7f-445e-91bb-880d0024fa02_wgs_gdc_realn.bam 43658917 BAM 941eaa525413372d3285b0c073daa551 C3L-03497.WGS.Tbm.hg38 819a71b8-b34d-42de-9fff-e1c948a5ea18 C3L-03497.WGS.Nbc.hg38 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 3a7b9705-99b2-44fe-863f-65fddd6ca6e0 C3L-03497 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-03497.final.SV.WGS.vcf 149706 VCF 2d1eeaf2b75708836358a7d1aad43ef7 C3L-03497.WGS.Tbm.hg38 819a71b8-b34d-42de-9fff-e1c948a5ea18 C3L-03497.WGS.Nbc.hg38 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 3a7b9705-99b2-44fe-863f-65fddd6ca6e0 +C3L-03506 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-03506.final.SV.WGS.vcf 146896 VCF 921dfaa50b2165ad8fa8205c7e1b9cc7 C3L-03506.WGS.Tbm.hg38 e588d3ea-e49d-436d-ba8d-3078d662beeb C3L-03506.WGS.Nbc.hg38 0e01c3e7-f302-4e40-84fa-39093f664511 8dc8d6be-a037-48c2-acc1-eb7ffe8a5542 +C3L-03508 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-03508.final.SV.WGS.vcf 150094 VCF e2e79c0f9fa9f31aa23b0c75c0bf55ef C3L-03508.WGS.Tbm.hg38 eb2d66d8-1b52-4fa6-9732-902cab19da2b C3L-03508.WGS.Nbc.hg38 931985c6-ced7-4c82-b2ef-ed40d574818f ca969090-22aa-4d15-96b4-398f2174d670 +C3L-03510 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-03510.final.SV.WGS.vcf 166024 VCF d1086d5ae1fb7a4f1f9ff3b16cccdab9 C3L-03510.WGS.Tbm.hg38 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 C3L-03510.WGS.Nbc.hg38 f800b205-92ba-4e0d-90bf-71788445fa57 72eadb6e-2ba8-4827-8d2a-6008cf40784c C3L-03589 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-03589.evidence_0.68f8e0fd-5220-4628-9987-e4fbea57e9e9_wgs_gdc_realn.bam 60649575 BAM 25a79c2f57efeb3ad2faca1b6f427d84 C3L-03589.WGS.T.hg38 558d49c6-bca4-415d-b337-421423306c9c C3L-03589.WGS.N.hg38 bd6b2826-154e-4b74-a395-7fadc4650c7c 8381c624-8170-4749-9317-77fd216f88f7 C3L-03589 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-03589.evidence_1.7683eac6-c2fe-47d2-969f-5d90ef340b6a_wgs_gdc_realn.bam 53181629 BAM dc6d39c52e95a8d4e7cfb77bcdb5798c C3L-03589.WGS.T.hg38 558d49c6-bca4-415d-b337-421423306c9c C3L-03589.WGS.N.hg38 bd6b2826-154e-4b74-a395-7fadc4650c7c 8381c624-8170-4749-9317-77fd216f88f7 C3L-03589 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-03589.final.SV.WGS.vcf 149104 VCF d1684a1ffe23c1fc34cfb8d8d9bd51ee C3L-03589.WGS.T.hg38 558d49c6-bca4-415d-b337-421423306c9c C3L-03589.WGS.N.hg38 bd6b2826-154e-4b74-a395-7fadc4650c7c 8381c624-8170-4749-9317-77fd216f88f7 @@ -1379,6 +1421,7 @@ C3L-04079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_ C3L-04079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04079.evidence_1.1acb4845-2e95-438b-95ad-2598b8dce7e7_wgs_gdc_realn.bam 51192503 BAM 81e795dc2a35c92405f7797902c5dae5 C3L-04079.WGS.T.hg38 40e8d818-d2c1-4bf9-a55b-0835e0ed02db C3L-04079.WGS.N.hg38 6a3d4196-15a5-48bd-bf17-52f093143682 48c2dfdc-71ee-4f81-8205-383321403cc2 C3L-04079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04079.final.SV.WGS.vcf 167795 VCF c45d02265d22cbbc55f7d27a1fb07a17 C3L-04079.WGS.T.hg38 40e8d818-d2c1-4bf9-a55b-0835e0ed02db C3L-04079.WGS.N.hg38 6a3d4196-15a5-48bd-bf17-52f093143682 48c2dfdc-71ee-4f81-8205-383321403cc2 C3L-04080 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04080.final.SV.WGS.vcf 154515 VCF cf5ac0933b3b71bb39876c23ebd81006 C3L-04080.WGS.T.hg38 fd0a5edf-f331-4563-818d-060962d79803 C3L-04080.WGS.N.hg38 68ab3e9a-bd37-44be-8133-99d381095699 471d1bac-b8e2-4005-9944-d793dc60843c +C3L-04081 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04081.final.SV.WGS.vcf 578852 VCF c7fbdd7cf43fc347cafa029a330ca77b C3L-04081.WGS.T.hg38 c8e3e5a9-2798-4125-a0f8-a84d2d5bb653 C3L-04081.WGS.N.hg38 4ad311e9-01c5-464a-8d6c-40f40c331c19 c671d360-5ad1-47d4-8321-a2c8d91bc494 C3L-04082 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04082.evidence_0.bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 49302562 BAM f46b2b72dd99343b0ef15f8df08f9d1a C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 b99c5c17-9751-4496-bcc4-962febc52b42 C3L-04082 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04082.evidence_1.55106539-3a36-4192-9e5c-0e548beee398_wgs_gdc_realn.bam 57742688 BAM 4deeb491fba52d9bc1b921d46f4bc66c C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 b99c5c17-9751-4496-bcc4-962febc52b42 C3L-04082 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04082.final.SV.WGS.vcf 178605 VCF 9529fcbaa88dc68196dff3c3127170fa C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 b99c5c17-9751-4496-bcc4-962febc52b42 @@ -1400,6 +1443,8 @@ C3L-04213 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3L-04216 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04216.evidence_0.a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 69997107 BAM a5a70ceaede0f1610ca5dba3d1415f36 C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 ad39c537-19ff-47a8-989b-51d58173097f C3L-04216 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04216.evidence_1.44f13f39-00b5-4c5b-9582-e06616a7f968_wgs_gdc_realn.bam 56083397 BAM 3f39ecf16d3a2e3bf25c32c2b6bcbec3 C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 ad39c537-19ff-47a8-989b-51d58173097f C3L-04216 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04216.final.SV.WGS.vcf 180153 VCF ecb2cde0afb9c784ae6261fbcb8d68ce C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 ad39c537-19ff-47a8-989b-51d58173097f +C3L-04231 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04231.final.SV.WGS.vcf 147817 VCF 697158698a17458abb60894c027f2b63 C3L-04231.WGS.Tbm.hg38 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c C3L-04231.WGS.Nbc.hg38 529ad08a-dedd-4191-abe7-f747e9306138 4a0e0395-62bd-425f-9274-c4dd3c81b37b +C3L-04236 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04236.final.SV.WGS.vcf 146176 VCF 6d55792cb2c9f879c9b303952bba4b69 C3L-04236.WGS.Tbm.hg38 88ec4690-af60-4ef8-970e-324e05ed6101 C3L-04236.WGS.Nbc.hg38 fd22f225-d998-47b7-894b-79a9d7ac4109 37a2e3bf-b5c5-4cad-afbe-f2d315f14c38 C3L-04241 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04241.evidence_0.d3d6f5df-52dd-408b-b664-4be0cf953c37_wgs_gdc_realn.bam 54627805 BAM 3e1e9ac62401560a266665d8bdc0d226 C3L-04241.WGS.Tbm.hg38 f8b81384-68cc-4fac-93d9-1ce01c490390 C3L-04241.WGS.Nbc.hg38 70432235-b33a-4105-85d6-fc7d029cf3bd 62f8e3ee-d7fa-4e57-b935-2be3967b0a49 C3L-04241 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04241.evidence_1.5d24733b-18fb-4f02-bad0-da55cd28c6cd_wgs_gdc_realn.bam 77783077 BAM 5f79ac8b6196916a6c18d78b6113cdbb C3L-04241.WGS.Tbm.hg38 f8b81384-68cc-4fac-93d9-1ce01c490390 C3L-04241.WGS.Nbc.hg38 70432235-b33a-4105-85d6-fc7d029cf3bd 62f8e3ee-d7fa-4e57-b935-2be3967b0a49 C3L-04241 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04241.final.SV.WGS.vcf 157158 VCF 1b988ef204c8fa53f622f8ea727c8b3f C3L-04241.WGS.Tbm.hg38 f8b81384-68cc-4fac-93d9-1ce01c490390 C3L-04241.WGS.Nbc.hg38 70432235-b33a-4105-85d6-fc7d029cf3bd 62f8e3ee-d7fa-4e57-b935-2be3967b0a49 @@ -1412,9 +1457,11 @@ C3L-04245 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1. C3L-04250 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04250.evidence_0.0a9cd9ca-4e79-432a-b867-657633a54a05_wgs_gdc_realn.bam 47017818 BAM cdd45a44573d3444a628a9e15a6f059d C3L-04250.WGS.Tbm.hg38 539b6614-4424-4a68-8462-e3ab2867246e C3L-04250.WGS.Nbc.hg38 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 558a3bf0-c17e-447e-8bb1-53acc432c200 C3L-04250 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04250.evidence_1.a1f75b6d-197c-4dd6-9bc1-51210d45b7e6_wgs_gdc_realn.bam 48948576 BAM e198557abbe2ea5a6c525d246ff199aa C3L-04250.WGS.Tbm.hg38 539b6614-4424-4a68-8462-e3ab2867246e C3L-04250.WGS.Nbc.hg38 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 558a3bf0-c17e-447e-8bb1-53acc432c200 C3L-04250 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04250.final.SV.WGS.vcf 147904 VCF 6bb2f8086e6f6de31a9c858692536794 C3L-04250.WGS.Tbm.hg38 539b6614-4424-4a68-8462-e3ab2867246e C3L-04250.WGS.Nbc.hg38 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 558a3bf0-c17e-447e-8bb1-53acc432c200 +C3L-04263 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04263.final.SV.WGS.vcf 151151 VCF 0470e9bee4a24ae182e1b38b7f204383 C3L-04263.WGS.Tbm.hg38 fdae0859-8401-4b76-8d57-bb6607a778c8 C3L-04263.WGS.Nbc.hg38 142d091a-aba1-4173-8c45-567d7ce4ee7f d0986d49-2ec0-4c06-b72a-c697dbc7f66b C3L-04265 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04265.evidence_0.f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wgs_gdc_realn.bam 49767896 BAM 07f5512d106a7a3b751de7a459bfb1fc C3L-04265.WGS.Tbm.hg38 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 C3L-04265.WGS.Nbc.hg38 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 73455d9a-428a-44a4-8675-58d97b006280 C3L-04265 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04265.evidence_1.3ea9c4aa-eba1-4958-a2c1-04867a968f63_wgs_gdc_realn.bam 48087087 BAM 7f855c98928d79714432733cbb988703 C3L-04265.WGS.Tbm.hg38 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 C3L-04265.WGS.Nbc.hg38 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 73455d9a-428a-44a4-8675-58d97b006280 C3L-04265 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04265.final.SV.WGS.vcf 146970 VCF 8c20b19b5d88a5bdbb600767342f2975 C3L-04265.WGS.Tbm.hg38 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 C3L-04265.WGS.Nbc.hg38 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 73455d9a-428a-44a4-8675-58d97b006280 +C3L-04270 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04270.final.SV.WGS.vcf 146293 VCF e1dac63fa170384125a6b8a1b435866e C3L-04270.WGS.Tbm.hg38 a382bf00-ff44-4937-98ed-fc56b0596db2 C3L-04270.WGS.Nbc.hg38 75406c0c-b54e-40da-8d71-7aebffc242d0 45995590-75b5-4d10-a7d8-dfff0edd7872 C3L-04336 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04336.evidence_0.4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 64399951 BAM 14b2695081af226e57fbb2cdbeed8605 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae a9e1888e-cf36-4418-9648-ba94f851305e C3L-04336 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04336.evidence_1.fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wgs_gdc_realn.bam 55196550 BAM b61b01060a3671c506f7cc63121987c4 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae a9e1888e-cf36-4418-9648-ba94f851305e C3L-04336 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04336.final.SV.WGS.vcf 208242 VCF 3551cbd459f9b4dbbb7bc3f6979e9151 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae a9e1888e-cf36-4418-9648-ba94f851305e @@ -1465,6 +1512,9 @@ C3L-04410 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_ C3L-04473 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04473.final.SV.WGS.vcf 149333 VCF 1b801df0dc6815acbee979c4d2f90467 C3L-04473.WGS.T.hg38 ffb2eec6-0b15-452c-b504-90f3899edb47 C3L-04473.WGS.N.hg38 1b7cb28b-6f79-412d-bfb2-a51570017a54 37df4251-f1a4-44c3-b5cb-69a4e8db6086 C3L-04475 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04475.final.SV.WGS.vcf 153517 VCF 87be9f30c5f2c1a6c8d11ea7b56cb451 C3L-04475.WGS.T.hg38 17fc61d6-0f01-45ee-8087-b78de8984763 C3L-04475.WGS.N.hg38 17238a3b-90bd-478b-883f-b61a6aa3bedf e981a423-17ec-4bfe-947f-627f4c3b89ef C3L-04479 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04479.final.SV.WGS.vcf 149536 VCF a1f88f3575a64bd7a4e4208b339c9fa0 C3L-04479.WGS.T.hg38 d193537d-6e11-4a26-bfee-72399c8099fc C3L-04479.WGS.N.hg38 3f8032aa-b17d-408e-b800-fb1716196c0d 1213115c-bd98-4b6a-b154-48c1acc2095f +C3L-04483 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04483.final.SV.WGS.vcf 146248 VCF 2314e31304a441c182d5034b918922b6 C3L-04483.WGS.Tbm.hg38 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 C3L-04483.WGS.Nbc.hg38 708e41fa-402b-44c6-8464-85e884efcdf0 8cac8cdf-c8dc-446f-b54d-05fb112bb21d +C3L-04486 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04486.final.SV.WGS.vcf 172263 VCF b6943885263a46a4c60fe3d4bb134ddf C3L-04486.WGS.Tbm.hg38 7258358e-0e5d-40cb-bf66-47a73d1e835a C3L-04486.WGS.Nbc.hg38 99844d17-85aa-41d8-8dac-ee50133783a6 795ad17b-c796-4343-8c38-f2b1107e2562 +C3L-04489 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04489.final.SV.WGS.vcf 160880 VCF 283f0df04fbca8346473f6ba98ae3abf C3L-04489.WGS.Tpb.hg38 a3d3e92c-ed2b-4a4b-8291-040d062ae556 C3L-04489.WGS.Nbc.hg38 a6625c57-93f4-4c2e-b532-8c887d04f22c 7eaaa50a-b71c-4e44-9d6b-a2766075a1bb C3L-04495 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04495.final.SV.WGS.vcf 145905 VCF 6e725f0a66743388c5f595c84379cef2 C3L-04495.WGS.T.hg38 71ebf493-075b-4b39-9a05-0c17fc0b2e16 C3L-04495.WGS.N.hg38 6376abc5-61d7-45c7-950a-ef8321e16243 a2ce942e-7ce0-4f54-b364-6db8b409687d C3L-04505 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04505.evidence_0.a3a5280c-83e2-460b-9dfb-9d1c5b7f38bb_wgs_gdc_realn.bam 32732895 BAM 4692fabc3674c401862c95f8719e3260 C3L-04505.WGS.Tbm.hg38 947c69cd-c679-42d6-865e-2697bb566e2d C3L-04505.WGS.Nbc.hg38 1f46e1d8-e1bc-47a3-95b5-841d6ef1fc43 ac9056d3-47e2-4f87-95a7-f4890483cc99 C3L-04505 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04505.evidence_1.94a8b257-0c7d-456d-86b4-df80ae095a53_wgs_gdc_realn.bam 45415435 BAM 457dd70ba8bd5ac707209c227c36e1db C3L-04505.WGS.Tbm.hg38 947c69cd-c679-42d6-865e-2697bb566e2d C3L-04505.WGS.Nbc.hg38 1f46e1d8-e1bc-47a3-95b5-841d6ef1fc43 ac9056d3-47e2-4f87-95a7-f4890483cc99 @@ -1493,6 +1543,8 @@ C3L-04757 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3L-04759 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04759.evidence_0.f0520344-6377-4462-862f-581f5f45a641_wgs_gdc_realn.bam 63628159 BAM 4ebac2bb833f73e03f5211357c4eceaf C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 f189e595-97ac-448e-a334-2a25a89d28f6 C3L-04759 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04759.evidence_1.5fc49ef3-8cdd-493c-846d-23ce0178019a_wgs_gdc_realn.bam 71157500 BAM de605bb030f3cd1c0bf89d6d08836aae C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 f189e595-97ac-448e-a334-2a25a89d28f6 C3L-04759 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04759.final.SV.WGS.vcf 158877 VCF fb24da635626a2d8d6e5e4a279e8e97b C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 f189e595-97ac-448e-a334-2a25a89d28f6 +C3L-04761 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04761.final.SV.WGS.vcf 146796 VCF b8c7c49496d957c719aa7a9f58af08d0 C3L-04761.WGS.Tbm.hg38 3d065aa6-d8f3-42d3-b435-63d257e95504 C3L-04761.WGS.Nbc.hg38 7b5193f4-61e1-40fd-97f0-eccf74fa790c 79b2a87a-c0cd-4b07-b29e-575ae54d0997 +C3L-04763 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-04763.final.SV.WGS.vcf 148520 VCF 9c1d4d70c3f4d0cce30ad0367931f567 C3L-04763.WGS.Tbm.hg38 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f C3L-04763.WGS.Nbc.hg38 14184470-cfa5-412b-8fd5-87bc5d88068f d62b21a8-a666-4079-9048-815a1374e184 C3L-04766 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04766.evidence_0.7522fb52-aa98-4b9c-a501-ead834f04edc_wgs_gdc_realn.bam 35403225 BAM 98bf4d19faef7d7c8d21171332aca8a5 C3L-04766.WGS.Tbm.hg38 d2f6501a-b963-45d6-a9a2-671b09642337 C3L-04766.WGS.Nbc.hg38 86308fbb-f98a-4d01-92c0-dcc81d98f203 b5ffd837-d9e7-4846-8f64-e8fa64096ba9 C3L-04766 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04766.evidence_1.a5bb1f68-34a2-4e89-93e2-894767d36772_wgs_gdc_realn.bam 35625426 BAM dc63a4ce7be33bbbff04291fa5a4c332 C3L-04766.WGS.Tbm.hg38 d2f6501a-b963-45d6-a9a2-671b09642337 C3L-04766.WGS.Nbc.hg38 86308fbb-f98a-4d01-92c0-dcc81d98f203 b5ffd837-d9e7-4846-8f64-e8fa64096ba9 C3L-04766 AML WGS_SV v1.2 20220411 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WGS_SV_v1.2_CPTAC3_AML1_20220411/C3L-04766.final.SV.WGS.vcf 148099 VCF 51dd584fe5ebe14458ba3f97bf56ff53 C3L-04766.WGS.Tbm.hg38 d2f6501a-b963-45d6-a9a2-671b09642337 C3L-04766.WGS.Nbc.hg38 86308fbb-f98a-4d01-92c0-dcc81d98f203 b5ffd837-d9e7-4846-8f64-e8fa64096ba9 @@ -1606,6 +1658,13 @@ C3L-05225 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_ C3L-05239 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-05239.evidence_0.445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 54875444 BAM bb386a6931793a0c14de8fb89ba5bee3 C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 47ea8530-4511-4ab4-af64-6d3936303101 C3L-05239 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-05239.evidence_1.7afb0ddf-9395-4033-a349-4d98081ffbe8_wgs_gdc_realn.bam 50135645 BAM ffb718e19a4f1384d28dead752c1a7ac C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 47ea8530-4511-4ab4-af64-6d3936303101 C3L-05239 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-05239.final.SV.WGS.vcf 162323 VCF 15f1fd72a20f055563096d5f9686398c C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 47ea8530-4511-4ab4-af64-6d3936303101 +C3L-05317 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05317.final.SV.WGS.vcf 150591 VCF 3b90e5f0c03e506683c566a0a66f545b C3L-05317.WGS.Tpb.hg38 106a273c-f44a-47df-b769-0f5969ede688 C3L-05317.WGS.Nbc.hg38 8169035d-610e-4406-a2bf-0252251f2300 b1c6b97f-9b1b-4af0-aa6b-5ecec5d29fff +C3L-05325 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05325.final.SV.WGS.vcf 152043 VCF dd04e637af81636e63f8792ff0bfca9a C3L-05325.WGS.Tbm.hg38 cc26201b-60ab-42fe-b54b-01affbeb695b C3L-05325.WGS.Nbc.hg38 bd569d7a-2452-48fc-bb63-a7592fecb358 c47abf58-43d6-4017-af47-047a727801c3 +C3L-05326 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05326.final.SV.WGS.vcf 149469 VCF cf464eb785be6cf0978a9babfcf99322 C3L-05326.WGS.Tbm.hg38 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 C3L-05326.WGS.Nbc.hg38 5642b833-19b5-4ca9-86f9-5f2dccbe5689 3cc4106b-be6f-4723-bf33-eba3e5767ef5 +C3L-05329 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05329.final.SV.WGS.vcf 158031 VCF 6eeab804b4860d8542900df072d9d043 C3L-05329.WGS.Tbm.hg38 2c76956b-1fb0-4fcf-af09-37466c893f73 C3L-05329.WGS.Nbc.hg38 791e3842-80c8-401d-a611-a5b5825f9ce7 3713c417-cf82-4c19-a53d-e66ef4eaf0fc +C3L-05331 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05331.final.SV.WGS.vcf 151035 VCF ba3ae86589d03dbef04719fa1b5cd6ce C3L-05331.WGS.Tbm.hg38 f1fae58f-9b1b-4025-a253-9dcb308f4beb C3L-05331.WGS.Nbc.hg38 bbf8979f-080d-4a93-8c81-3b5b44a6a5db eb2e96c8-6091-472f-8132-e0ca0418ec5b +C3L-05335 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05335.final.SV.WGS.vcf 149651 VCF 2b3837e7ae990e55e67ca982cfebecaf C3L-05335.WGS.Tbm.hg38 66e7a5d3-2eff-4840-ab1e-448203643be7 C3L-05335.WGS.Nbc.hg38 76841f2b-4fd7-4071-b9d5-e5b573c876f0 62417b7d-ffa9-42ea-a9e2-a960dbf7f5a9 +C3L-05338 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05338.final.SV.WGS.vcf 157046 VCF badf5373fcec11b7f03461d713067678 C3L-05338.WGS.Tbm.hg38 296b2dfb-9d7b-46c4-a848-4f96f19bb99b C3L-05338.WGS.Nbc.hg38 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 ab41bc02-cd69-4ddb-81f8-ce3b02cb92f7 C3L-05369 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05369.evidence_0.60330a1e-b890-4080-b328-a426cc600b86_wgs_gdc_realn.bam 53279060 BAM 6c244a00a260e52bd5f5f87903ea8dc4 C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 92fb4f49-c045-4518-b45a-13b64608b166 C3L-05369 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05369.evidence_1.d9f0103e-5df7-4f8e-a564-57886f38b001_wgs_gdc_realn.bam 55267563 BAM 4e7efbbee8d2a73b7a59d37f373cd36e C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 92fb4f49-c045-4518-b45a-13b64608b166 C3L-05369 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05369.final.SV.WGS.vcf 163784 VCF 5f6071c794105340ec46e81ef35706a3 C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 92fb4f49-c045-4518-b45a-13b64608b166 @@ -1648,21 +1707,96 @@ C3L-05427 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_ C3L-05428 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05428.evidence_0.dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wgs_gdc_realn.bam 57807658 BAM 9ce055c7f7e15335c9800edab95500a3 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 79e715c8-5e5e-40a0-8fa1-fdeb46649b18 C3L-05428 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05428.evidence_1.d15d106b-64ab-4e62-a0f3-dd22920946b7_wgs_gdc_realn.bam 53223882 BAM e1fdb5ef2370dd8fa99d552ac67ff3e5 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 79e715c8-5e5e-40a0-8fa1-fdeb46649b18 C3L-05428 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05428.final.SV.WGS.vcf 153689 VCF 836cd208f4033a909336f4e6cbb027e0 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 79e715c8-5e5e-40a0-8fa1-fdeb46649b18 +C3L-05481 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05481.final.SV.WGS.vcf 189076 VCF a57673f8da298cc131d04a89906f66c8 C3L-05481.WGS.T.hg38 7e51a55c-1945-4568-9355-6f037446733b C3L-05481.WGS.N.hg38 299c23c9-022e-44e9-82fd-c42f53062863 35a3c138-4662-4f37-8cd7-69e45e5a137f C3L-05571 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05571.evidence_0.2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wgs_gdc_realn.bam 48638719 BAM 225a46d9b8a6894f5f465f9b57d1ccd6 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 386f384c-4ea4-4a4d-9610-0458493884f8 C3L-05571 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05571.evidence_1.63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wgs_gdc_realn.bam 51065759 BAM 3abf72b245ed459032223e787e5cd0b7 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 386f384c-4ea4-4a4d-9610-0458493884f8 C3L-05571 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05571.final.SV.WGS.vcf 184073 VCF a9ba0df93fe642832ea9cf402003e960 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 386f384c-4ea4-4a4d-9610-0458493884f8 +C3L-05678 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05678.final.SV.WGS.vcf 163795 VCF 33c0ce7a4c7d5d0a227f0b4e692978f0 C3L-05678.WGS.Tpb.hg38 c9e37e32-d97e-4d6d-8ea9-843141103d21 C3L-05678.WGS.Nbc.hg38 42c8a39f-c216-4b9b-9397-0e17f6c3787f dde40f4c-d3d6-4a2d-b2ca-e6ee16823df0 C3L-05693 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05693.evidence_0.75cf68ed-fd4e-4592-b25c-85c9263a2adb_wgs_gdc_realn.bam 46913918 BAM 139d65e0c3162581631441c9331b8207 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 107967e3-6fe6-4d46-bbcc-bd0e7311d646 C3L-05693 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05693.evidence_1.7fde45f8-250d-45d1-827c-9f5313c7e614_wgs_gdc_realn.bam 43117341 BAM fe97111e320a759b208972d75b42e0f7 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 107967e3-6fe6-4d46-bbcc-bd0e7311d646 C3L-05693 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05693.final.SV.WGS.vcf 197240 VCF 7db41200e2764991930a7e047fdc7303 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 107967e3-6fe6-4d46-bbcc-bd0e7311d646 +C3L-05811 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05811.final.SV.WGS.vcf 152776 VCF 0aa8f3dc6a76e8f4c628ba63d11dd2bc C3L-05811.WGS.Tpb.hg38 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 C3L-05811.WGS.Nbc.hg38 181017af-d709-456e-ac61-d28f02aee849 15aac2ae-a381-447f-9478-ba1fdb398f16 +C3L-05815 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05815.final.SV.WGS.vcf 157386 VCF 33d0b1562f02fe25533b925f97c236dc C3L-05815.WGS.Tpb.hg38 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a C3L-05815.WGS.Nbc.hg38 16782800-b974-449d-a904-63e0450305c1 7dee9708-90fd-4563-a93d-4b0c810f7c92 +C3L-05816 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05816.final.SV.WGS.vcf 146241 VCF a585d7a2799bc032f3810394918457f4 C3L-05816.WGS.Tpb.hg38 56e0e868-c221-40e0-9757-a091ca137a68 C3L-05816.WGS.Nbc.hg38 0cc98eed-522d-4c11-927f-456208e184d8 329d820d-2a52-4774-b560-db0ff1be5525 +C3L-05818 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05818.final.SV.WGS.vcf 148791 VCF 33fcb93a4674978fe31a3e8ce7520e48 C3L-05818.WGS.Tpb.hg38 33763a8a-1d39-4242-a314-022ebf386cde C3L-05818.WGS.Nbc.hg38 79f3bf76-08d2-40cc-a261-d303e5d51318 c5b94a75-ad11-4423-ad2e-0f2361b79436 +C3L-05819 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05819.final.SV.WGS.vcf 156380 VCF 800e9289613d3a32dedf77473d65e46b C3L-05819.WGS.Tpb.hg38 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc C3L-05819.WGS.Nbc.hg38 08e4d192-7b7d-4f5a-859f-7a804bca3ddf 598073c5-9ecd-498d-b38b-8b06c877f682 C3L-05848 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05848.evidence_0.7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wgs_gdc_realn.bam 39496626 BAM dc87e4fed5b828e3ec9719677d80d527 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 bc4b34df-893b-42b4-94f1-90ee7387dd74 C3L-05848 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05848.evidence_1.4371e677-059d-4c39-9ec3-fdbad29b064e_wgs_gdc_realn.bam 46868971 BAM f51c8c190b301c01490cd04da66b9702 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 bc4b34df-893b-42b4-94f1-90ee7387dd74 C3L-05848 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05848.final.SV.WGS.vcf 194416 VCF e9966f8c167a992ff14021a6caf52230 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 bc4b34df-893b-42b4-94f1-90ee7387dd74 C3L-05849 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05849.evidence_0.138f530d-492b-4fc7-aba2-be1c9dc10174_wgs_gdc_realn.bam 36209695 BAM 90534011ff428c3f6e2326aba9b9561d C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 89d7c272-240d-4c3a-9757-fa2753ce3ef3 C3L-05849 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05849.evidence_1.6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wgs_gdc_realn.bam 43226663 BAM 4f9ab3830ac6124ec1566b4568b9fcc7 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 89d7c272-240d-4c3a-9757-fa2753ce3ef3 C3L-05849 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05849.final.SV.WGS.vcf 155992 VCF 1472d059a3f53433240e23e95386da00 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 89d7c272-240d-4c3a-9757-fa2753ce3ef3 +C3L-05861 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05861.final.SV.WGS.vcf 147443 VCF e562305a6d261c6ea480ba9383bd1f1b C3L-05861.WGS.Tbm.hg38 6e5f92dc-1661-4759-80cb-565482e59b19 C3L-05861.WGS.Nbc.hg38 a45b486c-f931-4d85-a7db-ed57d173c8ba d7c41e96-fa05-4809-a0f2-c23a84b753c0 +C3L-05862 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05862.final.SV.WGS.vcf 150896 VCF 0b3d0f38eb57acca668697ad5812bbda C3L-05862.WGS.Tpb.hg38 dd71b842-dcca-436e-bd57-2a4a47945ea1 C3L-05862.WGS.Nbc.hg38 cc820c53-59a0-4c02-ad49-62d668703147 0a9239db-0b27-473a-b87b-cac62d664d9d +C3L-05865 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05865.final.SV.WGS.vcf 162939 VCF 9839b77714cd3b4842b40229ce07b265 C3L-05865.WGS.Tbm.hg38 76bd6c51-c345-4984-b88a-869c51ebd318 C3L-05865.WGS.Nbc.hg38 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 321600b5-178d-4aae-bc6c-fca06da92a93 +C3L-05866 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05866.final.SV.WGS.vcf 147402 VCF 736da66bf709c2dcc49ef6435c12cd13 C3L-05866.WGS.Tbm.hg38 cabdf6e7-64e2-4429-87d0-7f95a3c9054f C3L-05866.WGS.Nbc.hg38 7f823e8f-f7ae-4cc6-a260-7e07843b534d 5e439c41-4f31-4182-b345-fb4ef5d5e3b0 +C3L-05870 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05870.final.SV.WGS.vcf 169906 VCF ea2bbebb03d4d18332e73c066caef35a C3L-05870.WGS.Tpb.hg38 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 C3L-05870.WGS.Nbc.hg38 08dc064e-d5a3-417c-ac3a-562b88329bc9 bd8c9baf-60e1-4094-8e9f-d005544e0f25 +C3L-05872 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05872.final.SV.WGS.vcf 162442 VCF ba192a8768aebb8070ec1c37b44ab369 C3L-05872.WGS.Tbm.hg38 571c510d-7fcc-40fd-8f1f-905375d8dfcc C3L-05872.WGS.Nbc.hg38 64766b93-1829-4232-a292-eeaf37c967b9 5d487f83-c4ff-4d02-9e4f-489d3a0eda51 +C3L-05877 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05877.final.SV.WGS.vcf 151963 VCF dbbfd3ebf7967a4b7cdf48b43c248d50 C3L-05877.WGS.Tbm.hg38 b158bbad-df67-4297-970f-9186bbc0a2bd C3L-05877.WGS.Nbc.hg38 0dcc0454-f17b-4951-9437-ff2891e22852 ede52283-1b10-475c-97dc-4e6a18b991f9 +C3L-05880 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05880.final.SV.WGS.vcf 148490 VCF b403002c3f93051b9b2916314c593f59 C3L-05880.WGS.Tbm.hg38 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 C3L-05880.WGS.Nbc.hg38 a4668566-e4f8-46a6-af3b-1879baa49290 41c27a89-4cd4-466b-9b79-7962b0e36504 +C3L-05884 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05884.final.SV.WGS.vcf 151694 VCF d12b1c36d0d3e308c2bbc1149e12d3a7 C3L-05884.WGS.Tbm.hg38 766dc870-eef3-4df7-88ef-16e5b7950943 C3L-05884.WGS.Nbc.hg38 0872d590-4c7c-4270-879e-d60630f04982 48679095-c132-4928-9227-c86b43fe66ec +C3L-05887 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05887.final.SV.WGS.vcf 151289 VCF 402b1b4bce667a52c2f7427745eca8d0 C3L-05887.WGS.Tbm.hg38 4e4e94e7-8082-469d-a621-8f506bead92f C3L-05887.WGS.Nbc.hg38 dbebe5b3-751c-418b-92ca-7a2e95782be0 8dce875c-8344-4a4c-9e44-391c8dee3d61 +C3L-05888 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05888.final.SV.WGS.vcf 151209 VCF 5829910f4a1b1e8455ee592a105efde0 C3L-05888.WGS.Tbm.hg38 1d979e9f-8895-43ac-b026-82da5d317b60 C3L-05888.WGS.Nbc.hg38 6c758b3c-100a-4699-abc1-60fea47b26ce ef09ee23-1555-4936-88fc-e63eb6d2a532 +C3L-05889 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05889.final.SV.WGS.vcf 148775 VCF 99f6e13c97cb9b11c17fd8e0d46a9814 C3L-05889.WGS.Tbm.hg38 75ed27c4-40d0-4082-9acf-9a19fd96b6df C3L-05889.WGS.Nbc.hg38 da5f49f1-d186-45bd-915a-227329e8b998 87f959db-2a5d-41e6-b625-048c12e1526d +C3L-05891 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05891.final.SV.WGS.vcf 152614 VCF 19a5f38c948d208dd1ba7e17a815133b C3L-05891.WGS.Tbm.hg38 9f9777c6-debb-46c5-a695-f9d04ec1236c C3L-05891.WGS.Nbc.hg38 aa5e5bd5-4de1-4fc8-9900-db318dd44574 cf7bc8b4-9cf1-4cd3-8378-8f5f763a6c30 +C3L-05896 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05896.final.SV.WGS.vcf 150086 VCF de6cb375388444f2537fcadd4389f682 C3L-05896.WGS.Tbm.hg38 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 C3L-05896.WGS.Nbc.hg38 80234ef6-f17c-4840-ae61-720e520c53ee c9682a97-6e66-46f1-921a-b1d95a5e0295 +C3L-05905 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05905.final.SV.WGS.vcf 151419 VCF 6984dff1281c9c5cde05e5ce7f6318fe C3L-05905.WGS.Tpb.hg38 10d9505e-54f3-4fda-8d41-9397231019b3 C3L-05905.WGS.Nbc.hg38 f3356d52-443e-430b-b183-c2255a34aee4 fb03b5f7-a206-42ab-a4cd-4fdbc662e980 +C3L-05908 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-05908.final.SV.WGS.vcf 150150 VCF 2d231ba83644c0e44765b6a96e6108de C3L-05908.WGS.Tbm.hg38 bb0e880d-d80c-4380-87d3-ee42c919d1cb C3L-05908.WGS.Nbc.hg38 7bef082d-803e-45b2-b53e-5a1399bf1b5c a55257e4-bed5-474e-9219-87dc2b164ae8 +C3L-06061 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06061.final.SV.WGS.vcf 181860 VCF 16f56d8a74d11865ac1364e5e5436798 C3L-06061.WGS.Tbm.hg38 df2b1538-16cb-4e8b-8347-592204bd6de2 C3L-06061.WGS.Nbc.hg38 d3aa2183-2a2b-49cb-94aa-722bb084d738 6b03cdb1-c72b-4f15-a6fc-50cf65e6d8f0 +C3L-06063 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06063.final.SV.WGS.vcf 146703 VCF ed3541cf41f6778d7e7c205ff22f990c C3L-06063.WGS.Tbm.hg38 e8f9b051-60b0-4579-b572-7b85f6a049e9 C3L-06063.WGS.Nbc.hg38 b3d51cee-b87d-49f6-ab1d-58196bb20849 f5666c33-caba-4f9a-88a1-953528ed67a9 +C3L-06064 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06064.final.SV.WGS.vcf 153930 VCF fd3069b7590034d85e07c8706e1ace58 C3L-06064.WGS.Tbm.hg38 57ed6f78-7ead-42e1-91d1-8922419b163c C3L-06064.WGS.Nbc.hg38 c7599d97-a30f-463f-82c9-b3f8dfc5abbe 7bb532a4-d055-46cb-92e6-52106f010af8 +C3L-06066 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06066.final.SV.WGS.vcf 144402 VCF fe09b8f846b380fcfb1f6b1f3824e985 C3L-06066.WGS.Tbm.hg38 ef8c9afd-27b8-4c74-abda-f2a080cbe817 C3L-06066.WGS.Nbc.hg38 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 925f0981-9978-415b-8080-290adeebc484 +C3L-06067 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06067.final.SV.WGS.vcf 157931 VCF 7b1e38e209dbd257c0a0484e296e919c C3L-06067.WGS.Tbm.hg38 7fa81a7c-59ad-4ece-a675-850df0bae7c2 C3L-06067.WGS.Nbc.hg38 dfd184ff-b179-4ab5-9587-83ed28776f05 82c621ce-4e3a-41c4-8d51-c8e7aa8a7915 +C3L-06068 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06068.final.SV.WGS.vcf 148650 VCF 714ce53acc1d12f7f4362de8085884fb C3L-06068.WGS.Tbm.hg38 aa7b5688-3e56-4228-becf-ccb94c76f378 C3L-06068.WGS.Nbc.hg38 f1b8e0e8-78c2-4480-b230-d7d243dcae43 afee01ff-4477-4aac-8afd-6c3723f44f1e +C3L-06069 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06069.final.SV.WGS.vcf 150524 VCF d8943f75cb02f2ed9b208a3a3ab79631 C3L-06069.WGS.Tbm.hg38 6479fcbc-6431-49c3-bb94-71a681a7438f C3L-06069.WGS.Nbc.hg38 fdc8d9db-7c70-44f3-b4bf-79729d61e81e 09cecbbe-56af-4324-8b1f-d098e58b9c38 +C3L-06070 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06070.final.SV.WGS.vcf 147128 VCF d627c54109bfaa864ba7c1e715fae6a4 C3L-06070.WGS.Tbm.hg38 c3419350-e9c5-489f-beec-f35203a5c2a4 C3L-06070.WGS.Nbc.hg38 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 d67db71f-e440-460c-b6fe-967a39df0d20 +C3L-06072 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06072.final.SV.WGS.vcf 155341 VCF 06309896bea26c41475e4a047634e71e C3L-06072.WGS.Tpb.hg38 d89ac0df-eada-4938-9b40-4ff3515eacdb C3L-06072.WGS.Nbc.hg38 343a85c3-aea3-4ca6-88e8-dadeff887a4f 33f166a2-db3e-46e4-8490-f559d1f6f874 +C3L-06074 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06074.final.SV.WGS.vcf 161086 VCF ab13edc3e459e658ffd54c170737730d C3L-06074.WGS.Tpb.hg38 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 C3L-06074.WGS.Nbc.hg38 d389e536-718a-4c9c-99c7-8301baa0fd09 ec47115e-17d3-4f67-99df-1f180fc82b8b +C3L-06075 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06075.final.SV.WGS.vcf 184172 VCF b587819e3fb5c005f8f9e4b0aac3c9c4 C3L-06075.WGS.Tbm.hg38 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 C3L-06075.WGS.Nbc.hg38 47e8d381-d52d-4117-b450-ab265a010af9 1f693da8-79fa-4539-bec4-b047fe46401a +C3L-06081 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06081.final.SV.WGS.vcf 164525 VCF 84865bd9a70f2fc808be7b569b8abbbf C3L-06081.WGS.Tbm.hg38 8a5d9822-2aac-41de-a04c-3bfcc975bd20 C3L-06081.WGS.Nbc.hg38 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 f5ee4216-8dc6-4046-a195-9bb4231d65cf +C3L-06087 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06087.final.SV.WGS.vcf 149248 VCF 074fdb6a5cdc3bc10476531890fe03f0 C3L-06087.WGS.Tpb.hg38 da1742db-aaf8-4617-a695-fea2359a0c0b C3L-06087.WGS.Nbc.hg38 76fbce3e-9d03-4812-af81-48f4ece89e38 c7a7a4ff-1734-4978-8513-fa3519045758 +C3L-06089 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06089.final.SV.WGS.vcf 147519 VCF cde404a9d6ce7a45aa534b4d73da674f C3L-06089.WGS.Tpb.hg38 37b73a94-d717-4fad-b01b-6f184d89e923 C3L-06089.WGS.Nbc.hg38 08e06a2b-fa98-47c2-8e5d-8a17196c3211 414d619d-ff4d-419f-a349-a56a9ef35104 +C3L-06090 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06090.final.SV.WGS.vcf 150206 VCF 6df91ee60d6e61d1b38338ebb0c26dd3 C3L-06090.WGS.Tpb.hg38 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a C3L-06090.WGS.Nbc.hg38 a722364a-e5e2-4e48-b998-36ebf73181a1 c23a4488-7c0b-4b38-8e89-dbce27dcbc24 C3L-06169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-06169.evidence_0.0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 46820969 BAM e949902c72a8c2a77d31c1513970120d C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a 08e4d94d-7cc4-4fc2-a25f-df16740cdb59 C3L-06169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-06169.evidence_1.4aa15ba7-8f09-406f-9950-0dbaad1751f0_wgs_gdc_realn.bam 54766734 BAM 1c381a8082648085ff7cd94dddda929b C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a 08e4d94d-7cc4-4fc2-a25f-df16740cdb59 C3L-06169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-06169.final.SV.WGS.vcf 163931 VCF 3b37b9645dcbe954f1a46adec6fc7a86 C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a 08e4d94d-7cc4-4fc2-a25f-df16740cdb59 +C3L-06352 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06352.final.SV.WGS.vcf 153482 VCF 3eca59163e94d4165bc049af8034de47 C3L-06352.WGS.Tpb.hg38 17c81b9e-2685-4178-8bb1-046c9380bfba C3L-06352.WGS.Nbc.hg38 27595487-bbe0-436e-b38c-1d86aa50d8b0 c2d465c2-167c-4fd3-b705-168dfaabc2dc +C3L-06356 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06356.final.SV.WGS.vcf 149867 VCF 978bb8a53c452ef1175bf4141a83cafd C3L-06356.WGS.Tbm.hg38 7e9fdf55-4553-45ce-b272-d72a89ebeccd C3L-06356.WGS.Nbc.hg38 77636d17-c52a-44b3-9a13-5a4a0e06d660 6ec292fa-ac0f-4157-8092-847809d86879 +C3L-06357 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06357.final.SV.WGS.vcf 175245 VCF ceeddf4e58af00d1d3b6022ab30c54ce C3L-06357.WGS.Tbm.hg38 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 C3L-06357.WGS.Nbc.hg38 0ae5fa74-35c4-400e-8946-969a354b3d0d 9652fa2f-0358-4786-a14a-b3baae877396 +C3L-06364 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06364.final.SV.WGS.vcf 153423 VCF 66c54edbfa01bed57c8e655247878fb1 C3L-06364.WGS.Tbm.hg38 d61d96da-f617-4d13-adae-d615f336047c C3L-06364.WGS.Nbc.hg38 04197309-7cc3-4385-a294-284c8c7e108d 1af046a5-4b3f-4dea-ab10-95742e44f852 +C3L-06367 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06367.final.SV.WGS.vcf 182332 VCF 74a4a49fba3a0b2c04a1972a9832bcd3 C3L-06367.WGS.Tbm.hg38 4b683e0d-6960-41cb-99c1-ed1ab9efa601 C3L-06367.WGS.Nbc.hg38 d72473d5-e10f-4d2c-967b-af4c443685bd 89cce1b6-d2c6-408c-8652-4a8f0b86149d +C3L-06369 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06369.final.SV.WGS.vcf 155617 VCF 734d9edd96530230a537f37d51834a28 C3L-06369.WGS.Tbm.hg38 d93cf91b-6505-4604-90a9-1ed7919a25f7 C3L-06369.WGS.Nbc.hg38 d4778278-deab-47c4-8cad-3ad89a813df0 421ef048-2160-4bea-af4c-b7d3a1a81a06 +C3L-06374 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06374.final.SV.WGS.vcf 149963 VCF 06c7ad1a06570ca9f37914fd9933f0d9 C3L-06374.WGS.Tbm.hg38 5a782fa9-d539-48e4-bdea-eee86f280403 C3L-06374.WGS.Nbc.hg38 1baab9c9-7a4f-40c9-9873-5fa78856e42e f787946e-fa16-48b1-ab3c-f58e1f19c4db +C3L-06536 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06536.final.SV.WGS.vcf 162203 VCF c1cf3663035e70a889ba874e5f57184b C3L-06536.WGS.Tbm.hg38 0819a42c-0ec4-4c56-9085-a5cefa866e5c C3L-06536.WGS.Nbc.hg38 d3eb1159-4ed5-4b4b-afc7-3121c141a45f 305ffa60-79ef-4e18-ad25-f099c3435a9c +C3L-06537 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06537.final.SV.WGS.vcf 149216 VCF 6cbd31bb11b73864e39debb8d65352cf C3L-06537.WGS.Tbm.hg38 047b861d-0027-4d8e-94a9-319d18db7b84 C3L-06537.WGS.Nbc.hg38 64b40dfd-471f-4fa3-bd24-f9ea433e8283 3d67d27e-578e-430d-888c-eaf27a3dd09a +C3L-06539 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06539.final.SV.WGS.vcf 154074 VCF 1f72ae8042688780b8018642bff47d35 C3L-06539.WGS.Tbm.hg38 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 C3L-06539.WGS.Nbc.hg38 472f4c29-feee-4101-9f40-24a10a33bcc3 3874ab4a-5324-4467-9c14-e7803b2bf19a +C3L-06540 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06540.final.SV.WGS.vcf 149980 VCF f8e36141ef732448ef60736528d4e591 C3L-06540.WGS.Tbm.hg38 6b58e6f7-133e-46d2-a78b-6d28408c9d3a C3L-06540.WGS.Nbc.hg38 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c b5ed5c47-437f-4df0-8e0d-20ae0ea3bcf3 +C3L-06541 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06541.final.SV.WGS.vcf 146966 VCF 9e2afd5fadefdca1c7f5237550941d5b C3L-06541.WGS.Tbm.hg38 0d821410-5bac-4cc3-acbe-95fcda1364ea C3L-06541.WGS.Nbc.hg38 353c9734-73ad-4bed-86b7-524c2d79a4b5 b252fa55-0e58-4b6e-8135-75aed1898890 +C3L-06542 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06542.final.SV.WGS.vcf 149363 VCF 049f8c9210a90c7faba3a600b90af814 C3L-06542.WGS.Tbm.hg38 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 C3L-06542.WGS.Nbc.hg38 1835d614-9a70-471e-8179-c103234cb687 9e95ee53-f9d1-4d11-a634-d7d6b56d149d +C3L-06543 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06543.final.SV.WGS.vcf 145915 VCF c105359dabe0bb65653acb1751f86474 C3L-06543.WGS.Tbm.hg38 640af29c-4df0-4694-99a3-63b0820bf958 C3L-06543.WGS.Nbc.hg38 10a4b333-5ffd-439e-a55a-aa95ac06b469 d8e3a867-ba41-4697-96e1-1b517b7be4ad +C3L-06625 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06625.final.SV.WGS.vcf 167018 VCF 03399d85767d5291cc417b23724097d7 C3L-06625.WGS.T.hg38 a7bd7fab-ba0d-43e2-9c92-ebbfb5d94cca C3L-06625.WGS.N.hg38 9d21e404-4a48-4eb3-8bee-66b811efd37e 82e739f0-be80-4d8b-b606-5287c007225b +C3L-06801 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06801.final.SV.WGS.vcf 146498 VCF dd390028e86c974bd2c798fc8605d0c9 C3L-06801.WGS.Tbm.hg38 c2325192-7bb3-4f7e-850b-1b1ccb80316b C3L-06801.WGS.Nbc.hg38 527e15dd-11c6-455b-bf87-8b24bc28b6e1 ba480e93-c694-48d3-bdd5-e1894c737e3a +C3L-06803 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06803.final.SV.WGS.vcf 155834 VCF 493bbaf5d73c18664add68afa9dcf817 C3L-06803.WGS.Tbm.hg38 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a C3L-06803.WGS.Nbc.hg38 887b6d76-aeda-4618-b395-4953f9f27201 46bb315d-3de4-4aa2-9456-eb3036fe3682 +C3L-06806 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06806.final.SV.WGS.vcf 150489 VCF 0cd81ffc57df556cf1a93cd0a27785f7 C3L-06806.WGS.Tbm.hg38 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f C3L-06806.WGS.Nbc.hg38 0c557241-6ab1-42cb-b964-30c1cf2c62b2 9c8cbd5f-70b5-4dc3-a3f6-5a14c59e2f43 +C3L-06807 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06807.final.SV.WGS.vcf 149674 VCF 2ea119ecf64a85c3b48dd368960c72e2 C3L-06807.WGS.Tbm.hg38 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 C3L-06807.WGS.Nbc.hg38 a5e65538-6337-4ca8-80e1-08d7f8916278 50171cb9-cddb-4427-8bae-90469a3fa330 +C3L-06809 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06809.final.SV.WGS.vcf 149663 VCF 813b71f5802a936c7757c4f4cbd281d6 C3L-06809.WGS.Tbm.hg38 d5f641bb-a84b-4cb2-932f-e25c73ef9081 C3L-06809.WGS.Nbc.hg38 57d26f1b-6ee3-425e-bab0-a006fab6ce90 8de3b88b-3546-4c7f-8440-6f51dff952ed +C3L-06951 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06951.final.SV.WGS.vcf 152854 VCF 3d2698872e8b8f559e4dc2185784216e C3L-06951.WGS.Tbm.hg38 097d3f76-6044-4639-a353-cddbae861463 C3L-06951.WGS.Nbc.hg38 78899104-aff8-41cb-865c-bbcda214cde3 0ca3c1bc-b252-40b1-990d-c57f7a1c6247 +C3L-06952 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06952.final.SV.WGS.vcf 149405 VCF 3fca19921f3e271bd40b3387cd4ed13e C3L-06952.WGS.Tbm.hg38 e786c669-ae8d-4f7e-9ff3-a8b674b81574 C3L-06952.WGS.Nbc.hg38 fe83e9be-7e7a-4295-906d-0317b2a405b5 87664068-28fc-4fae-8d96-41a4c44a992a +C3L-06953 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06953.final.SV.WGS.vcf 149351 VCF 73b7f5fa4315527a0e539c1c8eede34f C3L-06953.WGS.Tbm.hg38 02b919c1-e7df-495f-8084-65f8a1af6e45 C3L-06953.WGS.Nbc.hg38 afa8c524-60e7-423b-9677-8653c4a5da65 87dea9cb-485b-4817-8eb6-9f07bf7684e8 +C3L-06954 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06954.final.SV.WGS.vcf 161662 VCF 7844f5a516b7009847f4679b79cbcf51 C3L-06954.WGS.Tbm.hg38 4aec74c8-8469-4ab7-874e-cd559c14c396 C3L-06954.WGS.Nbc.hg38 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee 3fb2d78b-1d38-4658-a659-5a5502e544c6 +C3L-06956 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06956.final.SV.WGS.vcf 148456 VCF a1c6670de2d5fff2feab276966ed34cc C3L-06956.WGS.Tpb.hg38 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 C3L-06956.WGS.Nbc.hg38 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 dc2ba6ed-0a3e-4bd3-9101-6dbe2b903cd1 +C3L-06960 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06960.final.SV.WGS.vcf 149210 VCF 473ffba227657459058f0f534e7f87eb C3L-06960.WGS.Tpb.hg38 71fada9d-8485-4d3a-bd18-413e4a5ccd49 C3L-06960.WGS.Nbc.hg38 829aaac7-f4bf-464c-8823-3a474e550f29 9731cf93-fe11-484f-98dd-589f28da8f5e +C3L-06981 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06981.final.SV.WGS.vcf 146906 VCF 4823934385bcb533029b86b72d89df9c C3L-06981.WGS.Tpb.hg38 9ec0d8c2-3a7d-4579-b850-91811dc93dfd C3L-06981.WGS.Nbc.hg38 7ab67fa3-1ce9-4d82-920c-c2e87528b007 265e991e-424d-48cd-a3a1-f6c49c26455b +C3L-06982 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06982.final.SV.WGS.vcf 150228 VCF d0ad5dd363cdea9b1a4df27b12852f53 C3L-06982.WGS.Tpb.hg38 1bf7909e-23fb-418e-b3a8-957be0b608ba C3L-06982.WGS.Nbc.hg38 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 2312f998-55cf-4396-88d4-5458ba0c2949 +C3L-06983 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06983.final.SV.WGS.vcf 151839 VCF 285234b37a2044d3ff81649c9e63af50 C3L-06983.WGS.Tpb.hg38 1e2921db-5243-4ee6-8d9b-07ecef59fa12 C3L-06983.WGS.Nbc.hg38 69d8818f-a69e-4afa-a106-5bcbeece0a49 abbb7030-c1f7-4bbc-81c5-66363401405e +C3L-06984 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-06984.final.SV.WGS.vcf 152700 VCF 6b1d65c62399df0070961cdfad5e45e9 C3L-06984.WGS.Tpb.hg38 dc89ef04-c297-4432-a134-46486e9e8dcb C3L-06984.WGS.Nbc.hg38 65b123d9-9d59-4697-82bf-9db318649bb3 8cf9e3e4-3cf0-4980-8319-b3c70d329723 +C3L-07013 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07013.final.SV.WGS.vcf 150277 VCF 51a66ddaefd5a525ef2de9830eba8968 C3L-07013.WGS.Tbm.hg38 56965835-c74a-4372-9f42-4bb4fe46ae3a C3L-07013.WGS.Nbc.hg38 998c64c5-cac5-473d-a385-8c99522cf665 735ea702-a40f-445a-9370-18c4befec66c +C3L-07202 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07202.final.SV.WGS.vcf 150183 VCF bdc3d05f397eb8f3a2deef3d03b9e28a C3L-07202.WGS.T.hg38 27664a4a-b413-4602-a67e-2f168c52e22a C3L-07202.WGS.N.hg38 e8e293fc-c8ca-4cc8-809a-18ff04d36c91 9de8bf12-29b7-4f44-b5a1-9a16be1c1e8f +C3L-07213 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07213.final.SV.WGS.vcf 152173 VCF 95be2678f4ce24518187239a482be17c C3L-07213.WGS.T.hg38 50f5310c-72b0-4d41-a8ce-6f4b370c351e C3L-07213.WGS.N.hg38 81f5956f-4df7-41d9-be6e-af59c628b6dd 4dbf2060-92f9-4a37-95b1-5d151375e968 +C3L-07437 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07437.final.SV.WGS.vcf 152827 VCF a7bf37a39f2a6122940a982792a03193 C3L-07437.WGS.Tpb.hg38 b8a63078-67cb-4929-afe2-4ab723ea9327 C3L-07437.WGS.Nbc.hg38 7f2b71bd-804b-4dbb-9d74-3539784d34e4 d6ed7dc6-4fb3-478a-af06-5d6fb203c4aa +C3L-07439 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07439.final.SV.WGS.vcf 148938 VCF 31448df43337cb639af27ff32668dc73 C3L-07439.WGS.Tpb.hg38 e8607566-c0aa-40a6-9b90-263e0ab072b1 C3L-07439.WGS.Nbc.hg38 8f38803a-d993-4cf9-a78b-121bb76b10d0 32370bec-2d90-450c-8731-a2551efa1aa9 +C3L-07490 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07490.final.SV.WGS.vcf 150178 VCF 3b6226a495eac85ef8510f25fbaffd53 C3L-07490.WGS.Tbm.hg38 036102b0-a019-45e8-b9db-ea99632f6ad5 C3L-07490.WGS.Nbc.hg38 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d aedf38df-6830-4508-a8e2-8db3fea37365 +C3L-07611 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3L-07611.final.SV.WGS.vcf 146150 VCF d2306dfa9fe189b9ec6d69c6bbd697dd C3L-07611.WGS.T.hg38 c86ee9c9-faff-49f4-b731-53751cc80228 C3L-07611.WGS.N.hg38 0ef89055-e885-438d-9e05-f60f89725367 3f470c35-8f10-40a8-822d-4bf8447e8781 C3N-00148 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00148.evidence_0.925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 63235226 BAM 8c5876dc65a6cbe970b8ad0587a52686 C3N-00148.WGS.T.hg38 521f64b0-af2c-46ca-915d-2b4d563b744d C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd e012de7f-9a09-465d-ad2e-3132bcc6a0a9 C3N-00148 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00148.evidence_1.127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 54257241 BAM a400dcfa4beeb8013aaf3f08404c887e C3N-00148.WGS.T.hg38 521f64b0-af2c-46ca-915d-2b4d563b744d C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd e012de7f-9a09-465d-ad2e-3132bcc6a0a9 C3N-00148 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00148.final.SV.WGS.vcf 146056 VCF e3fb30ca528ed996161d78557b154819 C3N-00148.WGS.T.hg38 521f64b0-af2c-46ca-915d-2b4d563b744d C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd e012de7f-9a09-465d-ad2e-3132bcc6a0a9 @@ -2106,10 +2240,16 @@ C3N-00646.HET_r6jrqW CCRCC WGS_SV v1.1 20210218 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3 C3N-00647 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00647.evidence_0.992a2e30-9acc-44fb-96ed-e84ebe4f98f3_wgs_gdc_realn.bam 40792647 BAM af1b14451d771da161aaa408bba5f38e C3N-00647.WGS.T.hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f C3N-00647.WGS.N.hg38 aeef39b1-87b9-4242-af72-31c6a0d4682b 67b717b4-26a4-4b48-8c8b-4c6ef63cb1b6 C3N-00647 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00647.evidence_1.adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wgs_gdc_realn.bam 40176913 BAM 4f8537fdf5a4b68dd726d510f56c9a5a C3N-00647.WGS.T.hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f C3N-00647.WGS.N.hg38 aeef39b1-87b9-4242-af72-31c6a0d4682b 67b717b4-26a4-4b48-8c8b-4c6ef63cb1b6 C3N-00647 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00647.final.SV.WGS.vcf 148171 VCF 7a2d91730771d135b9475907b93c661e C3N-00647.WGS.T.hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f C3N-00647.WGS.N.hg38 aeef39b1-87b9-4242-af72-31c6a0d4682b 67b717b4-26a4-4b48-8c8b-4c6ef63cb1b6 +C3N-00656 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-00656.final.SV.WGS.vcf 158380 VCF 277cc7ee08b8e487a1d594cfa4b13d87 C3N-00656.WGS.Tbm.hg38 c0204f8e-861d-4005-a7af-9a9f9cac802a C3N-00656.WGS.Nbc.hg38 71add2cb-73d9-4aa3-8025-8fc9a58267b4 9553064e-4808-4b5f-b3e6-dd92ed1df4cb +C3N-00659 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-00659.final.SV.WGS.vcf 159871 VCF b23923db76f449ba33d3a86319acb767 C3N-00659.WGS.Tbm.hg38 6fca0608-132e-41e7-8103-0d121e45004d C3N-00659.WGS.Nbc.hg38 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 c94d6d92-7b63-4245-b490-3bab2ce9f622 +C3N-00660 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-00660.final.SV.WGS.vcf 152769 VCF 272bc7bf59092cdf23cb874d1973d6fb C3N-00660.WGS.Tbm.hg38 f6819867-14ed-436d-aaa6-e87e5ffce392 C3N-00660.WGS.Nbc.hg38 6d340b8f-1f8e-4c6a-91b1-dd502378d273 56c31d3d-4dae-40c0-be8f-fdc726e7d34d C3N-00661 GBM WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.0_Y2.b1_20190405/C3N-00661.final.SV.WGS.vcf 177907 VCF c53dd341a365f2f5bd47cc3eab74b71f C3N-00661.WGS.T.hg38 2fed7e32-d8c9-46cf-8ace-368ede492a80 C3N-00661.WGS.N.hg38 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f C3N-00662 GBM WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.0_Y2.b1_20190405/C3N-00662.final.SV.WGS.vcf 176234 VCF 2076d1eed2c486e6fd20a01aee290a65 C3N-00662.WGS.T.hg38 071aca22-1581-46de-b6d5-7b64afeb0d85 C3N-00662.WGS.N.hg38 dd1e269b-54b0-4731-a58e-dd1c5f87c097 C3N-00663 GBM WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.0_Y2.b1_20190405/C3N-00663.final.SV.WGS.vcf 155922 VCF a51383536f739a27b02b662cf00f6cfd C3N-00663.WGS.T.hg38 65c5d898-e316-4071-87cd-f1341762fd48 C3N-00663.WGS.N.hg38 d6582bf3-3f98-46b1-a149-7997f5009bda C3N-00665 GBM WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.0_Y2.b1_20190405/C3N-00665.final.SV.WGS.vcf 177678 VCF 9df4222d94f1ef2f02eb35fdc1ffbf83 C3N-00665.WGS.T.hg38 aabf00cc-4646-4c76-ba85-e71a9918937b C3N-00665.WGS.N.hg38 394b7faf-cc03-4e59-a36c-01fbfba7449c +C3N-00681 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-00681.final.SV.WGS.vcf 149269 VCF d0c214fe02a81a7f6d98c70ce8c25292 C3N-00681.WGS.Tbm.hg38 364841e8-4076-4d6b-be96-5a384877d20e C3N-00681.WGS.Nbc.hg38 fe2d050d-a92a-42e6-925c-669ac5a858c2 4b495bb3-b3a5-4b8a-9553-3ef58d528c05 +C3N-00682 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-00682.final.SV.WGS.vcf 151640 VCF 9da199772b74ad93cd884272a659dc2b C3N-00682.WGS.Tbm.hg38 a9f6a226-2277-4b18-8c66-49821f0b9fc6 C3N-00682.WGS.Nbc.hg38 5c144d70-5a22-494a-95d5-184d07361a2d abf9a5e5-5901-4a6d-803d-05d5c711ed81 +C3N-00689 AML WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/AML/CPTAC3_AML_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-00689.final.SV.WGS.vcf 149360 VCF 90dc0745142d9d4b7be0be9a1c69feba C3N-00689.WGS.Tbm.hg38 d67370bf-7944-4bb2-91a5-ada579ec1bdd C3N-00689.WGS.Nbc.hg38 878e413b-ef66-45a3-98c4-bc1c3dbf53cc 01a7deeb-868c-41ed-a07a-789e717cd90a C3N-00704 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/C3N-00704.SV.WGS.vcf 149723 VCF 6b777d133affae7920625336668075cd Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 C3N-00709 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3N-00709.final.SV.WGS.vcf 184961 VCF d6e65ccc03717c6fec821bfc3f63a21d C3N-00709.WGS.T.hg38 06095f68-a4bf-4c25-be51-b634a545179f C3N-00709.WGS.N.hg38 d9d988fc-80c7-4eb3-894f-4696dcf881de f7478313-fe38-46f9-9c61-167efc99c63a C3N-00715 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00715.evidence_0.ab1402df-40d6-4ae0-a989-f3e28a544fda_wgs_gdc_realn.bam 44573995 BAM a296e4ecbe4876fb4c1ff568f600da0f C3N-00715.WGS.T.hg38 e56a537d-8fee-4342-aba1-b60586ef8b06 C3N-00715.WGS.N.hg38 670e1eac-c39f-45a3-9e4f-4cdd42af654c c2c796e1-38d5-4c9f-9e78-c13652e8cb1f @@ -3446,6 +3586,7 @@ C3N-04100 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3N-04113 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04113.evidence_0.48f76814-e8a6-4689-ae08-37a3da4fbccf_wgs_gdc_realn.bam 63314714 BAM 7e4965e1acde1b7715bb45fe8471d7ab C3N-04113.WGS.T.hg38 b4fdd133-7457-4a99-9621-b06aad5f7def C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff d7635ab2-c9cd-4f48-92c6-0ce458d425f1 C3N-04113 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04113.evidence_1.5ad1a3d2-831b-405d-b7d9-7e1728337e25_wgs_gdc_realn.bam 45958168 BAM de15430a23d6d5b2d234628677cd72db C3N-04113.WGS.T.hg38 b4fdd133-7457-4a99-9621-b06aad5f7def C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff d7635ab2-c9cd-4f48-92c6-0ce458d425f1 C3N-04113 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04113.final.SV.WGS.vcf 216124 VCF ad4fb1972916994640ea2c00a50c2055 C3N-04113.WGS.T.hg38 b4fdd133-7457-4a99-9621-b06aad5f7def C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff d7635ab2-c9cd-4f48-92c6-0ce458d425f1 +C3N-04113 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C3N-04113.REP_7d56a3b1.final.SV.WGS.vcf 283061 VCF fbb3b2a4d5a7640f3164eab71cf53378 C3N-04113.REP_7d56a3b1.WGS.T.hg38 316589c0-c980-491c-85cb-ed6085aa0239 C3N-04113.WGS.N.hg38 8a56868d-6456-4125-bd94-c89e0afdaeff 453eb8cf-2397-443d-ad3c-ba93726af201 C3N-04119 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3N-04119.final.SV.WGS.vcf 165810 VCF 8e6aae50ee6e26a22bb9bbdb6ae7a481 C3N-04119.WGS.T.hg38 1becad3b-33c5-4bad-b7ee-20ee2603f398 C3N-04119.WGS.N.hg38 b8610c14-73e9-485b-9f23-36594cc52aaf 3f8afdf9-c994-4de6-b29f-1d66ac02cfa6 C3N-04124 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3N-04124.final.SV.WGS.vcf 161110 VCF 2f468d5c22ed381fe2dff27b400c520e C3N-04124.WGS.T.hg38 158d370c-a4a4-480e-bd8a-ee046d107d3b C3N-04124.WGS.N.hg38 9f83f046-a892-448f-92ff-0d84f2d9d9c3 C3N-04126 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3N-04126.final.SV.WGS.vcf 171564 VCF 6e830f732231570fb03c8713c91eee4c C3N-04126.WGS.T.hg38 ad71fa8c-a7d8-474b-8218-8ecbb1bdf3d7 C3N-04126.WGS.N.hg38 e6899c13-9355-4f15-92c0-af79b70fcdf6 7aa1b013-7f43-420d-b97b-41dececa2994 @@ -3563,3 +3704,12 @@ C3N-05929 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_ C3N-05991 GBM WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3N-05991.evidence_0.099752ff-7fa5-4eb0-831a-09e5a211d5c3_wgs_gdc_realn.bam 59498073 BAM 134fd0eca3337bcb7645b784dc80658b C3N-05991.WGS.T.hg38 050d8938-f282-41da-94a0-94fefe053d4e C3N-05991.WGS.N.hg38 39243f84-1aee-49d4-8a00-32c396a850f3 cf5111ef-9b27-4548-a790-41ec15035491 C3N-05991 GBM WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3N-05991.evidence_1.0ca72fda-2cdf-415a-b5a4-53470bf3af60_wgs_gdc_realn.bam 68261332 BAM 9029bd4432539409870acb96eb239101 C3N-05991.WGS.T.hg38 050d8938-f282-41da-94a0-94fefe053d4e C3N-05991.WGS.N.hg38 39243f84-1aee-49d4-8a00-32c396a850f3 cf5111ef-9b27-4548-a790-41ec15035491 C3N-05991 GBM WGS_SV v1.1 20211014 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_SomaticSV.batch_1021_20211014/C3N-05991.final.SV.WGS.vcf 158153 VCF 4bf83e6bfb2ca0d23c39d0cdb6a3d088 C3N-05991.WGS.T.hg38 050d8938-f282-41da-94a0-94fefe053d4e C3N-05991.WGS.N.hg38 39243f84-1aee-49d4-8a00-32c396a850f3 cf5111ef-9b27-4548-a790-41ec15035491 +C464694 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C464694.final.SV.WGS.vcf 343346 VCF 6dfd1e9c5f7bbc2790605ba280e69469 C464694.DUP_7319b796.WGS.T.hg38 77c6fb07-df6b-4048-a13a-4dd4df35c0e2 C464694.WGS.N.hg38 bd0412f4-6d85-4fde-a8da-4da9f281836f 367398cd-e209-4721-abed-edb707816794 +C524103 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C524103.final.SV.WGS.vcf 304221 VCF 2cbf78bb58b2b90fd7339187ed4397a4 C524103.DUP_aee3de0f.WGS.T.hg38 a6ec178b-fa93-4486-9b6f-3d1f0392fa4e C524103.WGS.N.hg38 9e1d34a0-bb29-454f-846b-28c073c1adcf 7eb9bdda-df7f-4df1-9d10-88d2e5ddf3dc +C685110 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C685110.ALQ_eaaf51d6.final.SV.WGS.vcf 323426 VCF fbd3798d6f71eb2b82adac7fd360c8bc C685110.WGS.T.hg38 fbd79a73-b732-40ef-a0f4-958216263a3c C685110.WGS.N.hg38 e25543a2-1b16-473c-880f-e6958968eaa9 1c80e1ba-946b-42f5-ab73-80beb20fdea5 +C685110 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C685110.DUP_224ab8cc.final.SV.WGS.vcf 314518 VCF 1fefe15c2a3b958893e24ad58bb72f91 C685110.DUP_224ab8cc.WGS.T.hg38 8f94f328-8cf9-41b8-b087-10e5793ddcb8 C685110.WGS.N.hg38 e25543a2-1b16-473c-880f-e6958968eaa9 2ec49406-ccb2-443a-bab8-c06cb0998a82 +C761370 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C761370.ALQ_2f414f12.final.SV.WGS.vcf 197180 VCF 1024e22166e356f64d783c0af6dd75e1 C761370.WGS.T.hg38 f6231081-86d3-4b91-9b78-69de532a74ef C761370.WGS.N.hg38 8d798315-d251-4b30-9ae8-46eef4166aaf 01eb8b34-65fa-4240-abe0-b1bbafb9e8b5 +C761370 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C761370.DUP_260f1df4.final.SV.WGS.vcf 196575 VCF 1c01c49442e23084af1497b996a167a9 C761370.DUP_260f1df4.WGS.T.hg38 f5979a9a-e1e5-4b1e-8a6d-971a8619cdb2 C761370.WGS.N.hg38 8d798315-d251-4b30-9ae8-46eef4166aaf ec84d38a-8be9-4e6b-b149-965433fcef3e +C827913 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C827913.final.SV.WGS.vcf 189395 VCF 12a94ff9008631ecb1aa791f09930303 C827913.WGS.T.hg38 7fa9454f-837a-4544-a1d8-091244567425 C827913.WGS.N.hg38 f261a842-13a0-46c7-a457-6044eb7312a9 db1913e8-f425-4c7b-851c-7b04653b17ff +C846363 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C846363.ALQ_621fbd89.final.SV.WGS.vcf 162639 VCF a43a803f74fccdacccca112b302882c3 C846363.WGS.T.hg38 0189a0e1-989c-4c4f-bac9-347ea63ce6d9 C846363.WGS.N.hg38 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 ad60e3f4-897b-4168-8ff4-91cec50c2121 +C846363 GBM WGS_SV v1.2.1 20220904 Y3 /CPTAC3.Y3_WashU_Upload/GBM/CPTAC3_GBM_WGS_SV_v1.2.1_WGS_SV_CNV_20220904/C846363.DUP_51dcc4a3.final.SV.WGS.vcf 161444 VCF 1bd322a48089da9e5158b3021f910bb3 C846363.DUP_51dcc4a3.WGS.T.hg38 f5321ae8-799c-4684-9c96-c41090f687d0 C846363.WGS.N.hg38 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 711cbfc2-a4cb-4354-8792-42086a69a61c