diff --git a/BamMap/storage1.BamMap.dat b/BamMap/storage1.BamMap.dat index f10d5d5..3d77b80 100644 --- a/BamMap/storage1.BamMap.dat +++ b/BamMap/storage1.BamMap.dat @@ -689,6 +689,8 @@ C3L-00011.RNA-Seq.R2.A C3L-00011 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-00011.RNA-Seq.R2.T C3L-00011 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec72b0a4-24ba-49e4-9b07-36302c576165/170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 5020359841 FASTQ NA ec72b0a4-24ba-49e4-9b07-36302c576165 storage1 C3L-00016.RNA-Seq.R1.T C3L-00016 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9a867a6-3d0e-4ae3-9255-b14de2da0bc0/170818_UNC32-K00270_0050_AHL2FHBBXX_TAGCTT_S15_L004_R1_001.fastq.gz 3913028223 FASTQ NA b9a867a6-3d0e-4ae3-9255-b14de2da0bc0 storage1 C3L-00016.RNA-Seq.R2.T C3L-00016 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9be64798-0704-4670-98e6-14d37e34d359/170818_UNC32-K00270_0050_AHL2FHBBXX_TAGCTT_S15_L004_R2_001.fastq.gz 4252326429 FASTQ NA 9be64798-0704-4670-98e6-14d37e34d359 storage1 +C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fbbc31e-053a-4d23-8a67-2fdff79e1141/d82ec42c-7c4f-4e59-ba88-1c883b9c6732.rna_seq.genomic.gdc_realn.bam 9981542710 BAM hg38 9fbbc31e-053a-4d23-8a67-2fdff79e1141 storage1 +C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/435f1318-6e70-4a62-9321-b0ca736e9d14/d51783ce-12f6-46ca-86f1-10d85611cf17.rna_seq.genomic.gdc_realn.bam 7421030916 BAM hg38 435f1318-6e70-4a62-9321-b0ca736e9d14 storage1 C3L-00017.RNA-Seq.R1.A C3L-00017 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7829f978-5fd7-436a-9ec2-2e58a7bcb1f7/180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R1_001.fastq.gz 4470007340 FASTQ NA 7829f978-5fd7-436a-9ec2-2e58a7bcb1f7 storage1 C3L-00017.RNA-Seq.R1.T C3L-00017 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2b5f6b3-828b-4320-9e4d-4b2eaa4e7e6f/170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R1_001.fastq.gz 3555365035 FASTQ NA d2b5f6b3-828b-4320-9e4d-4b2eaa4e7e6f storage1 C3L-00017.RNA-Seq.R2.A C3L-00017 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f7d0b77-134e-4216-9d8d-411f0d7ed0ed/180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R2_001.fastq.gz 4682486832 FASTQ NA 8f7d0b77-134e-4216-9d8d-411f0d7ed0ed storage1 @@ -767,6 +769,8 @@ C3L-00098.RNA-Seq.R1.T C3L-00098 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-00098.RNA-Seq.R1.T C3L-00098 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abf7cbc1-260e-44e6-a0c8-0aa0cc62e80d/20210729_P3_E1_WB7988-Plate3_S49_R1_001.fastq.gz 5378348437 FASTQ NA abf7cbc1-260e-44e6-a0c8-0aa0cc62e80d storage1 C3L-00098.RNA-Seq.R2.T C3L-00098 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d616095-baa8-4e12-a6ad-20182be762fb/20210729_P3_E1_WB7988-Plate3_S49_R2_001.fastq.gz 5567821485 FASTQ NA 0d616095-baa8-4e12-a6ad-20182be762fb storage1 C3L-00098.RNA-Seq.R2.T C3L-00098 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23be22ae-de50-4d74-a7c0-c890adbc662a/170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 3679125276 FASTQ NA 23be22ae-de50-4d74-a7c0-c890adbc662a storage1 +C3L-00102.RNA-Seq.genomic.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af3b88e2-6420-4143-8609-eb4ddc1b02f4/57493d7e-611e-4b88-9009-711dd1ad3ab6.rna_seq.genomic.gdc_realn.bam 8955500863 BAM hg38 af3b88e2-6420-4143-8609-eb4ddc1b02f4 storage1 +C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7466fd10-0f9a-467a-bf50-043383661537/f76fa529-e080-43d5-a417-52c26e32349e.rna_seq.genomic.gdc_realn.bam 7909040825 BAM hg38 7466fd10-0f9a-467a-bf50-043383661537 storage1 C3L-00102.RNA-Seq.R1.A C3L-00102 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/893b0db2-7d98-4d74-af8c-93039af57455/180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R1_001.fastq.gz 4097212793 FASTQ NA 893b0db2-7d98-4d74-af8c-93039af57455 storage1 C3L-00102.RNA-Seq.R1.T C3L-00102 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5002990e-a20d-4114-93ea-c5c09f148fed/170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3735627356 FASTQ NA 5002990e-a20d-4114-93ea-c5c09f148fed storage1 C3L-00102.RNA-Seq.R2.A C3L-00102 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f51f3a38-4291-448f-a064-3215b323e437/180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R2_001.fastq.gz 4030560886 FASTQ NA f51f3a38-4291-448f-a064-3215b323e437 storage1 @@ -783,8 +787,10 @@ C3L-00103.RNA-Seq.R2.A C3L-00103 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-00103.RNA-Seq.R2.T C3L-00103 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a37d45d8-1c52-4fd2-906f-d70282c859ec/170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 4462888273 FASTQ NA a37d45d8-1c52-4fd2-906f-d70282c859ec storage1 C3L-00103.RNA-Seq.R2.T.HET_qZq3G C3L-00103 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fad68f1e-fa0e-4d25-a822-600c8a10afbb/200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4342999494 FASTQ NA fad68f1e-fa0e-4d25-a822-600c8a10afbb storage1 C3L-00103.RNA-Seq.R2.T.HET_r9p5p C3L-00103 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f6794c3-542b-481f-9bfe-dd4781ec781c/200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R2_001.fastq.gz 6449461194 FASTQ NA 7f6794c3-542b-481f-9bfe-dd4781ec781c storage1 +C3L-00104.RNA-Seq.chimeric.T.hg38 C3L-00104 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c0ed322-f613-4bb9-bb87-01424e8b4d90/e86802b2-71d4-41e7-9698-ea5e0bc1a673.rna_seq.chimeric.gdc_realn.bam 59626720 BAM hg38 4c0ed322-f613-4bb9-bb87-01424e8b4d90 storage1 C3L-00104.RNA-Seq.R1.T C3L-00104 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a140b753-b805-40f4-90c0-25f726357d04/171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4795357750 FASTQ NA a140b753-b805-40f4-90c0-25f726357d04 storage1 C3L-00104.RNA-Seq.R2.T C3L-00104 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebd6b26a-bbec-485a-9700-9a26cd0c2402/171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 5281943263 FASTQ NA ebd6b26a-bbec-485a-9700-9a26cd0c2402 storage1 +C3L-00104.RNA-Seq.transcriptome.T.hg38 C3L-00104 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fccb593e-bb76-4223-b50e-2d4cf2dc8283/e86802b2-71d4-41e7-9698-ea5e0bc1a673.rna_seq.transcriptome.gdc_realn.bam 9652542224 BAM hg38 fccb593e-bb76-4223-b50e-2d4cf2dc8283 storage1 C3L-00136.RNA-Seq.R1.T C3L-00136 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1553b506-f502-4b5b-a7c9-e40af087a0b2/20210714_P1_D8_WB7988_plate1_S44_R1_001.fastq.gz 6629829146 FASTQ NA 1553b506-f502-4b5b-a7c9-e40af087a0b2 storage1 C3L-00136.RNA-Seq.R1.T C3L-00136 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df0e2942-c702-4135-81a0-fbec4439d753/170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R1_001.fastq.gz 4224214315 FASTQ NA df0e2942-c702-4135-81a0-fbec4439d753 storage1 C3L-00136.RNA-Seq.R2.T C3L-00136 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e1ad404-4646-4828-91b9-e3c35a4ce505/170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R2_001.fastq.gz 4672327244 FASTQ NA 4e1ad404-4646-4828-91b9-e3c35a4ce505 storage1 @@ -831,6 +837,7 @@ C3L-00165.RNA-Seq.R2.A C3L-00165 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-00165.RNA-Seq.R2.T C3L-00165 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c3699a8-1547-4721-afd1-ce7b6b255bae/190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R2_001.fastq.gz 3737441772 FASTQ NA 5c3699a8-1547-4721-afd1-ce7b6b255bae storage1 C3L-00183.RNA-Seq.R1.T C3L-00183 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27bf8e37-426b-496f-8d9c-6ccc7c80b2f6/170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R1_001.fastq.gz 3350745323 FASTQ NA 27bf8e37-426b-496f-8d9c-6ccc7c80b2f6 storage1 C3L-00183.RNA-Seq.R2.T C3L-00183 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96db17cb-b531-47b3-98fc-a86921831781/170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R2_001.fastq.gz 3625849342 FASTQ NA 96db17cb-b531-47b3-98fc-a86921831781 storage1 +C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d612777d-91df-49a9-819a-162647f7ae15/5fd31346-f54b-43b5-9968-2e463f87f4f7.rna_seq.genomic.gdc_realn.bam 8640547254 BAM hg38 d612777d-91df-49a9-819a-162647f7ae15 storage1 C3L-00189.RNA-Seq.R1.T C3L-00189 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/beef0b1b-6b54-455b-914f-d774ee730e7b/170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3733769690 FASTQ NA beef0b1b-6b54-455b-914f-d774ee730e7b storage1 C3L-00189.RNA-Seq.R2.T C3L-00189 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f5f8487-0642-4731-8db7-e1e194bdb9f5/170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3871559073 FASTQ NA 5f5f8487-0642-4731-8db7-e1e194bdb9f5 storage1 C3L-00189.WXS.N.hg38 C3L-00189 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82b6d795-c960-42e3-a2f6-fa488f4f4d3e/7c72d1eb-35b2-4f3b-ac73-db99b0c1832c_gdc_realn.bam 46704002870 BAM hg38 82b6d795-c960-42e3-a2f6-fa488f4f4d3e storage1 @@ -844,6 +851,7 @@ C3L-00265.RNA-Seq.R1.T C3L-00265 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-00265.RNA-Seq.R2.T C3L-00265 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/060e65f9-e379-4618-865d-3b10bf8fbbad/170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L001_R2_001.fastq.gz 3890014097 FASTQ NA 060e65f9-e379-4618-865d-3b10bf8fbbad storage1 C3L-00275.RNA-Seq.R1.T C3L-00275 CM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/310fdc25-f963-4ce6-b5a3-e2f046bf12d0/171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4637357806 FASTQ NA 310fdc25-f963-4ce6-b5a3-e2f046bf12d0 storage1 C3L-00275.RNA-Seq.R2.T C3L-00275 CM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a69bce17-00f5-45e4-8f3d-344b6d0734de/171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5279806733 FASTQ NA a69bce17-00f5-45e4-8f3d-344b6d0734de storage1 +C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5044465f-6d5a-4f30-b024-c0dbb7144ad1/a4f3c3ff-60d1-4ca3-897f-785dcf1d25d0.rna_seq.genomic.gdc_realn.bam 8056180233 BAM hg38 5044465f-6d5a-4f30-b024-c0dbb7144ad1 storage1 C3L-00277.RNA-Seq.R1.T C3L-00277 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a08adf4b-e3f8-4377-869e-aa7ce258cbdf/170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4216556912 FASTQ NA a08adf4b-e3f8-4377-869e-aa7ce258cbdf storage1 C3L-00277.RNA-Seq.R2.T C3L-00277 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12732716-1c43-41b3-9def-bffbe95e960b/170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R2_001.fastq.gz 4554252121 FASTQ NA 12732716-1c43-41b3-9def-bffbe95e960b storage1 C3L-00277.WXS.A.hg38 C3L-00277 PDA WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d89c8782-bb0f-4521-95f6-3131321a9cbc/c7dd538d-a66e-4698-8f58-d5c2f6863d0c_wxs_gdc_realn.bam 37935575374 BAM hg38 d89c8782-bb0f-4521-95f6-3131321a9cbc storage1 @@ -880,8 +888,10 @@ C3L-00362.RNA-Seq.R1.T C3L-00362 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-00362.RNA-Seq.R1.T C3L-00362 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/638dd879-a5ee-437c-9f30-c97dcfa19a09/170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R1_001.fastq.gz 3723944064 FASTQ NA 638dd879-a5ee-437c-9f30-c97dcfa19a09 storage1 C3L-00362.RNA-Seq.R2.T C3L-00362 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87ec48f8-0fb1-47c9-a167-e4559e4b3203/20210714_P1_F2_WB7988_plate1_S62_R2_001.fastq.gz 7074047662 FASTQ NA 87ec48f8-0fb1-47c9-a167-e4559e4b3203 storage1 C3L-00362.RNA-Seq.R2.T C3L-00362 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a02f460b-1cbd-4c92-a5ef-9928088c8c1e/170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R2_001.fastq.gz 4179158272 FASTQ NA a02f460b-1cbd-4c92-a5ef-9928088c8c1e storage1 +C3L-00365.RNA-Seq.chimeric.T.hg38 C3L-00365 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e40c847-a50b-4144-8f84-e02628c2833b/b44988b3-2906-455f-9a03-98e881ec0826.rna_seq.chimeric.gdc_realn.bam 134800859 BAM hg38 3e40c847-a50b-4144-8f84-e02628c2833b storage1 C3L-00365.RNA-Seq.R1.T C3L-00365 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c44ed7f2-1622-46de-804c-9611500c3fc0/170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R1_001.fastq.gz 4305229627 FASTQ NA c44ed7f2-1622-46de-804c-9611500c3fc0 storage1 C3L-00365.RNA-Seq.R2.T C3L-00365 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce/170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R2_001.fastq.gz 4633365552 FASTQ NA 1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce storage1 +C3L-00365.RNA-Seq.transcriptome.T.hg38 C3L-00365 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe304d8-7715-4b45-8a50-396f7a3d3f3e/b44988b3-2906-455f-9a03-98e881ec0826.rna_seq.transcriptome.gdc_realn.bam 9245106889 BAM hg38 fbe304d8-7715-4b45-8a50-396f7a3d3f3e storage1 C3L-00368.RNA-Seq.R1.A C3L-00368 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc417a64-b28b-4b98-bceb-72290423edab/171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R1_001.fastq.gz 2812587486 FASTQ NA bc417a64-b28b-4b98-bceb-72290423edab storage1 C3L-00368.RNA-Seq.R1.T C3L-00368 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb8ea747-c1e3-4688-951e-2003f19d54ed/170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4191973381 FASTQ NA bb8ea747-c1e3-4688-951e-2003f19d54ed storage1 C3L-00368.RNA-Seq.R2.A C3L-00368 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2677613-eac0-454b-bae2-d617f4d4499d/171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R2_001.fastq.gz 2954299519 FASTQ NA d2677613-eac0-454b-bae2-d617f4d4499d storage1 @@ -894,6 +904,8 @@ C3L-00369.RNA-Seq.R2.A C3L-00369 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-00369.RNA-Seq.R2.T C3L-00369 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21c6bcae-8c89-403c-942e-e017be8fcb22/170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R2_001.fastq.gz 4589565712 FASTQ NA 21c6bcae-8c89-403c-942e-e017be8fcb22 storage1 C3L-00369.RNA-Seq.R2.T.HET_o25lqN C3L-00369 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27a5d8ca-2413-4978-ac91-a446d558c6a5/200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R2_001.fastq.gz 5300994968 FASTQ NA 27a5d8ca-2413-4978-ac91-a446d558c6a5 storage1 C3L-00369.RNA-Seq.R2.T.HET_qx1JJ0 C3L-00369 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca658797-2345-433f-8617-c14524027bba/200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 4951122606 FASTQ NA ca658797-2345-433f-8617-c14524027bba storage1 +C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68478b4b-f188-4bde-91b7-5f65df9f3551/3b4f8139-2d72-4ff7-910a-cfd233b67c6b.rna_seq.genomic.gdc_realn.bam 9146584176 BAM hg38 68478b4b-f188-4bde-91b7-5f65df9f3551 storage1 +C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d4e9a22-c614-40da-b130-c230a07eb8eb/ad6bd250-1110-46cb-addb-a5066749fe24.rna_seq.genomic.gdc_realn.bam 9060089388 BAM hg38 4d4e9a22-c614-40da-b130-c230a07eb8eb storage1 C3L-00395.RNA-Seq.R1.A C3L-00395 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60af23f1-4a28-4fbe-a9da-547a52f9ae40/180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R1_001.fastq.gz 4051028052 FASTQ NA 60af23f1-4a28-4fbe-a9da-547a52f9ae40 storage1 C3L-00395.RNA-Seq.R1.T C3L-00395 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad5886c9-bb87-453c-bf23-854d27a5db90/170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4821204983 FASTQ NA ad5886c9-bb87-453c-bf23-854d27a5db90 storage1 C3L-00395.RNA-Seq.R2.A C3L-00395 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b61189fc-f6bf-4922-bbab-20cbc75ddcbe/180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R2_001.fastq.gz 4304355992 FASTQ NA b61189fc-f6bf-4922-bbab-20cbc75ddcbe storage1 @@ -901,6 +913,7 @@ C3L-00395.RNA-Seq.R2.T C3L-00395 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-00395.WXS.N.hg38 C3L-00395 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa7d45c9-329b-4891-8f8e-e1fce2b9bda5/93b22d31-3cd3-4c13-bc7c-e52fe3a9d69f_gdc_realn.bam 48728279573 BAM hg38 aa7d45c9-329b-4891-8f8e-e1fce2b9bda5 storage1 C3L-00395.WXS.T.hg38 C3L-00395 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0d9cb1a-46f2-4b05-9917-abd752c8162b/e6e523ac-1f81-4b60-bc4b-240d04fa2753_gdc_realn.bam 39814400832 BAM hg38 f0d9cb1a-46f2-4b05-9917-abd752c8162b storage1 C3L-00395.WXS.T.hg38.high_cov C3L-00395 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/348402ae-edf8-4c5e-9e00-a9d8f3f9c751/4b9596de-e4e8-4623-a83c-fa87759929d3_wxs_gdc_realn.bam 78373781948 BAM hg38 348402ae-edf8-4c5e-9e00-a9d8f3f9c751 storage1 +C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d93b645-a43e-4287-a9f4-a8b32dc4f81c/0ead3020-d6fb-40ff-8aef-6ee893a64cb4.rna_seq.genomic.gdc_realn.bam 6658360190 BAM hg38 4d93b645-a43e-4287-a9f4-a8b32dc4f81c storage1 C3L-00401.RNA-Seq.R1.T C3L-00401 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64ca103c-f18f-44de-b8b1-123784233175/170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3189467493 FASTQ NA 64ca103c-f18f-44de-b8b1-123784233175 storage1 C3L-00401.RNA-Seq.R2.T C3L-00401 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b84802-756a-4188-8cee-262aac9e0685/170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 3457497108 FASTQ NA 65b84802-756a-4188-8cee-262aac9e0685 storage1 C3L-00412.RNA-Seq.R1.A C3L-00412 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a8c5c0f-4635-499c-a8cf-a2ecd6bfc5a9/171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R1_001.fastq.gz 2707979121 FASTQ NA 7a8c5c0f-4635-499c-a8cf-a2ecd6bfc5a9 storage1 @@ -1079,14 +1092,18 @@ C3L-00586.RNA-Seq.R1.T C3L-00586 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-00586.RNA-Seq.R2.A C3L-00586 UCEC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9509bda6-905c-4583-b31a-debc0d5afc82/180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R2_001.fastq.gz 4623538411 FASTQ NA 9509bda6-905c-4583-b31a-debc0d5afc82 storage1 C3L-00586.RNA-Seq.R2.T C3L-00586 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d4f92c4-9b34-48a5-ba92-c6f42ee61a11/20210723_P2_A3_WB7988-plate2_S3_R2_001.fastq.gz 3775461393 FASTQ NA 8d4f92c4-9b34-48a5-ba92-c6f42ee61a11 storage1 C3L-00586.RNA-Seq.R2.T C3L-00586 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e731e945-44ae-4179-9672-a2a6a1fb2d94/170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R2_001.fastq.gz 5988626529 FASTQ NA e731e945-44ae-4179-9672-a2a6a1fb2d94 storage1 +C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5eabcb4-275c-410d-9879-6eb5869c36c1/790603ca-17bb-4395-ba5e-94900617a06c.rna_seq.genomic.gdc_realn.bam 11075697519 BAM hg38 c5eabcb4-275c-410d-9879-6eb5869c36c1 storage1 +C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74da0ec0-3512-4cc3-baf2-82a7d1060ded/aeba96cf-8652-4fb7-828a-ab10e1b2ec0b.rna_seq.genomic.gdc_realn.bam 7967964091 BAM hg38 74da0ec0-3512-4cc3-baf2-82a7d1060ded storage1 C3L-00589.RNA-Seq.R1.A C3L-00589 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20d32d65-582a-4620-9c43-d2c7c245f584/180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R1_001.fastq.gz 5066238960 FASTQ NA 20d32d65-582a-4620-9c43-d2c7c245f584 storage1 C3L-00589.RNA-Seq.R1.T C3L-00589 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9568d5b0-fb1c-47bc-bd22-e13e816f7a8d/170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R1_001.fastq.gz 3920592967 FASTQ NA 9568d5b0-fb1c-47bc-bd22-e13e816f7a8d storage1 C3L-00589.RNA-Seq.R2.A C3L-00589 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4b1dbfa-3713-4c5e-9087-bbbcc1a51f54/180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R2_001.fastq.gz 5740435397 FASTQ NA e4b1dbfa-3713-4c5e-9087-bbbcc1a51f54 storage1 C3L-00589.RNA-Seq.R2.T C3L-00589 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da2c3763-55e0-4d4b-91d0-d0af716be826/170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R2_001.fastq.gz 4141977042 FASTQ NA da2c3763-55e0-4d4b-91d0-d0af716be826 storage1 C3L-00591.RNA-Seq.R1.T C3L-00591 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05139df5-3a85-4380-bdc1-efbfe764d1a9/170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3754191459 FASTQ NA 05139df5-3a85-4380-bdc1-efbfe764d1a9 storage1 C3L-00591.RNA-Seq.R2.T C3L-00591 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eae7cd2c-46b0-448b-9666-56871463002c/170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L004_R2_001.fastq.gz 4077879362 FASTQ NA eae7cd2c-46b0-448b-9666-56871463002c storage1 +C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c7716fd-1c10-4de1-a7b1-a764133a52e0/44dc96bd-d59e-4b31-8897-552d8ae9fd91.rna_seq.genomic.gdc_realn.bam 8755804690 BAM hg38 4c7716fd-1c10-4de1-a7b1-a764133a52e0 storage1 C3L-00598.RNA-Seq.R1.T C3L-00598 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b478f334-dfb5-454c-86c3-bd69233ba106/170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3989517240 FASTQ NA b478f334-dfb5-454c-86c3-bd69233ba106 storage1 C3L-00598.RNA-Seq.R2.T C3L-00598 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53a54935-e290-42a5-89c8-d983987b1fc3/170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R2_001.fastq.gz 4073723122 FASTQ NA 53a54935-e290-42a5-89c8-d983987b1fc3 storage1 +C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0725004-09c9-496c-a566-93ce12170d58/6232b21a-09e6-47ff-b083-e5db46d06e09.rna_seq.genomic.gdc_realn.bam 9799130490 BAM hg38 a0725004-09c9-496c-a566-93ce12170d58 storage1 C3L-00599.RNA-Seq.R1.T C3L-00599 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1670ad87-2708-4ed6-998a-782e7b346522/170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3985199647 FASTQ NA 1670ad87-2708-4ed6-998a-782e7b346522 storage1 C3L-00599.RNA-Seq.R2.T C3L-00599 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe9a475f-851e-4d88-be9e-cf0ef2922c26/170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3906051021 FASTQ NA fe9a475f-851e-4d88-be9e-cf0ef2922c26 storage1 C3L-00601.RNA-Seq.R1.A C3L-00601 UCEC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/15a20d32-beec-4388-9408-480db8a1ae5c/180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R1_001.fastq.gz 3897339245 FASTQ NA 15a20d32-beec-4388-9408-480db8a1ae5c storage1 @@ -1140,26 +1157,35 @@ C3L-00617.WGS.Nbc.hg38 C3L-00617 AML WGS buccal_normal /storage1/fs1/m.wyczalkow C3L-00617.WGS.Tbm.hg38 C3L-00617 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98eaebef-92a8-4da4-96f8-21ef7564d427/8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wgs_gdc_realn.bam 164255332846 BAM hg38 98eaebef-92a8-4da4-96f8-21ef7564d427 storage1 C3L-00617.WXS.Nbc.hg38 C3L-00617 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/330d8216-962d-487b-9f5b-c57c7ffb7706/a4794da6-1610-49ca-a3c9-b703572c2990_wxs_gdc_realn.bam 37483160612 BAM hg38 330d8216-962d-487b-9f5b-c57c7ffb7706 storage1 C3L-00617.WXS.Tbm.hg38 C3L-00617 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39e6f6b4-818a-422f-8ffe-543ff935c9c2/8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wxs_gdc_realn.bam 33271906056 BAM hg38 39e6f6b4-818a-422f-8ffe-543ff935c9c2 storage1 +C3L-00622.RNA-Seq.genomic.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9be0c237-d074-4d2b-895f-80daef14a6b7/c9e621ed-ed0b-4392-bc07-581253c66156.rna_seq.genomic.gdc_realn.bam 8439978864 BAM hg38 9be0c237-d074-4d2b-895f-80daef14a6b7 storage1 +C3L-00622.RNA-Seq.genomic.T.hg38 C3L-00622 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ee29760-a36e-44c6-bbbf-25450da72715/17198d79-94ff-4c52-afbb-d510fe314c15.rna_seq.genomic.gdc_realn.bam 9984650010 BAM hg38 7ee29760-a36e-44c6-bbbf-25450da72715 storage1 C3L-00622.RNA-Seq.R1.A C3L-00622 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee0d436f-ad91-401e-9b1a-8b0633bbbfe9/180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3332254867 FASTQ NA ee0d436f-ad91-401e-9b1a-8b0633bbbfe9 storage1 C3L-00622.RNA-Seq.R1.T C3L-00622 PDA RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af3e8a0e-23fd-4729-9944-58264ef43564/8a2ebd5f-0857-43f9-b057-293deaf18bc0.rna_seq.genomic.gdc_realn.bam 9260242858 BAM hg38 af3e8a0e-23fd-4729-9944-58264ef43564 storage1 C3L-00625.RNA-Seq.R1.T C3L-00625 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/637a1123-2d19-4fb8-8c2b-62b5244519c7/170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3611516224 FASTQ NA 637a1123-2d19-4fb8-8c2b-62b5244519c7 storage1 C3L-00625.RNA-Seq.R2.T C3L-00625 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc431b64-163e-4e98-a110-cb5692802d83/170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3919468106 FASTQ NA cc431b64-163e-4e98-a110-cb5692802d83 storage1 C3L-00629.RNA-Seq.R1.T C3L-00629 CM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc60c8bd-59ca-4f9f-b6ad-ea12fcec0691/171011_UNC31-K00269_0086_AHLJLCBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 5321994380 FASTQ NA dc60c8bd-59ca-4f9f-b6ad-ea12fcec0691 storage1 C3L-00629.RNA-Seq.R2.T C3L-00629 CM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64b1a836-2617-417e-99be-e78fb00fd641/171011_UNC31-K00269_0086_AHLJLCBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5675144981 FASTQ NA 64b1a836-2617-417e-99be-e78fb00fd641 storage1 C3L-00631.RNA-Seq.R1.T C3L-00631 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc56f593-4b2c-43a3-8510-eb5fd3c5a636/170818_UNC32-K00270_0051_BHLCCHBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4260788061 FASTQ NA dc56f593-4b2c-43a3-8510-eb5fd3c5a636 storage1 C3L-00631.RNA-Seq.R2.T C3L-00631 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f07fda88-50e4-419c-a63e-495af06950f9/170818_UNC32-K00270_0051_BHLCCHBBXX_GATCAG_S11_L003_R2_001.fastq.gz 4563328441 FASTQ NA f07fda88-50e4-419c-a63e-495af06950f9 storage1 +C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfa23859-8a3e-4f14-8018-d0269863c4e0/832ef78d-7629-46e0-862e-5d2e250ceb5e.rna_seq.genomic.gdc_realn.bam 8484009157 BAM hg38 dfa23859-8a3e-4f14-8018-d0269863c4e0 storage1 +C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/510bcf2a-44f5-4821-b885-db740a37594b/4164e0e9-8038-40a0-b5a9-61f9617e9135.rna_seq.genomic.gdc_realn.bam 6469999487 BAM hg38 510bcf2a-44f5-4821-b885-db740a37594b storage1 C3L-00640.RNA-Seq.R1.A C3L-00640 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cc3e251-b039-4f7a-9f24-f013c999082e/180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R1_001.fastq.gz 3689683237 FASTQ NA 6cc3e251-b039-4f7a-9f24-f013c999082e storage1 C3L-00640.RNA-Seq.R1.T C3L-00640 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33806087-ff71-44e1-86ac-67e5e48af603/170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 2855966677 FASTQ NA 33806087-ff71-44e1-86ac-67e5e48af603 storage1 C3L-00640.RNA-Seq.R2.A C3L-00640 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dad8c71-f547-4abf-bfeb-4c82d1f0a3a9/180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R2_001.fastq.gz 4124785029 FASTQ NA 1dad8c71-f547-4abf-bfeb-4c82d1f0a3a9 storage1 C3L-00640.RNA-Seq.R2.T C3L-00640 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1aae486e-75c6-44a9-a69a-56459137c071/170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 3207024272 FASTQ NA 1aae486e-75c6-44a9-a69a-56459137c071 storage1 C3L-00671.RNA-Seq.R1.T C3L-00671 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2756606c-5c75-49f9-95d2-6d016582c20b/170823_UNC31-K00269_0076_BHLCTFBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4172993945 FASTQ NA 2756606c-5c75-49f9-95d2-6d016582c20b storage1 C3L-00671.RNA-Seq.R2.T C3L-00671 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a27bde88-b3d1-436b-ac01-0887eab16663/170823_UNC31-K00269_0076_BHLCTFBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4484440615 FASTQ NA a27bde88-b3d1-436b-ac01-0887eab16663 storage1 +C3L-00674.RNA-Seq.chimeric.T.hg38 C3L-00674 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfeacbd2-fb7e-41f0-b45f-cc6fee88ce07/d4187670-64bc-48c5-9be9-3780bc7cd89e.rna_seq.chimeric.gdc_realn.bam 33824476 BAM hg38 bfeacbd2-fb7e-41f0-b45f-cc6fee88ce07 storage1 C3L-00674.RNA-Seq.R1.T C3L-00674 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e77417b-9b2c-4504-827c-af04a22624be/170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 4303463091 FASTQ NA 7e77417b-9b2c-4504-827c-af04a22624be storage1 C3L-00674.RNA-Seq.R2.T C3L-00674 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eaf91490-e4f5-470e-83fd-9df23bc5a93a/170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4600073376 FASTQ NA eaf91490-e4f5-470e-83fd-9df23bc5a93a storage1 +C3L-00674.RNA-Seq.transcriptome.T.hg38 C3L-00674 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/371d5b1a-75c3-4174-865e-00cdb92de256/d4187670-64bc-48c5-9be9-3780bc7cd89e.rna_seq.transcriptome.gdc_realn.bam 9380961835 BAM hg38 371d5b1a-75c3-4174-865e-00cdb92de256 storage1 +C3L-00677.RNA-Seq.chimeric.T.hg38 C3L-00677 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4085f10-a6ff-4f78-a725-a6244eb07d80/0d1e2fdc-6246-4c05-a4af-967e338acec6.rna_seq.chimeric.gdc_realn.bam 49385665 BAM hg38 b4085f10-a6ff-4f78-a725-a6244eb07d80 storage1 C3L-00677.RNA-Seq.R1.T C3L-00677 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/304fea20-f8c8-4481-b569-d4f292f18ac7/170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R1_001.fastq.gz 4173547985 FASTQ NA 304fea20-f8c8-4481-b569-d4f292f18ac7 storage1 C3L-00677.RNA-Seq.R2.T C3L-00677 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/792f7658-8838-4de8-956f-b0680b8609eb/170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4396146449 FASTQ NA 792f7658-8838-4de8-956f-b0680b8609eb storage1 +C3L-00677.RNA-Seq.transcriptome.T.hg38 C3L-00677 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e9a5052-903d-46eb-8c39-2ce8b0ff5988/0d1e2fdc-6246-4c05-a4af-967e338acec6.rna_seq.transcriptome.gdc_realn.bam 7859286177 BAM hg38 3e9a5052-903d-46eb-8c39-2ce8b0ff5988 storage1 C3L-00765.RNA-Seq.R1.T C3L-00765 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d87a8aa1-7a2a-4637-9b19-543b5bc959b2/170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3650442725 FASTQ NA d87a8aa1-7a2a-4637-9b19-543b5bc959b2 storage1 C3L-00765.RNA-Seq.R2.T C3L-00765 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b56ffa0-2871-4d85-b663-d6c666343b72/170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4016717982 FASTQ NA 3b56ffa0-2871-4d85-b663-d6c666343b72 storage1 C3L-00766.RNA-Seq.R1.T C3L-00766 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/440a7243-ea6e-46a5-99ac-cc1602d1d0de/170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R1_001.fastq.gz 4618158717 FASTQ NA 440a7243-ea6e-46a5-99ac-cc1602d1d0de storage1 @@ -1232,12 +1258,16 @@ C3L-00815.RNA-Seq.R1.T C3L-00815 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3L-00815.RNA-Seq.R2.T C3L-00815 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e009da5-b71d-4d50-80e6-f002f6ccd12e/170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R2_001.fastq.gz 5336892992 FASTQ NA 1e009da5-b71d-4d50-80e6-f002f6ccd12e storage1 C3L-00817.RNA-Seq.R1.T C3L-00817 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62cf4129-5b75-4b79-b8b8-1a6419447193/170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R1_001.fastq.gz 3900525958 FASTQ NA 62cf4129-5b75-4b79-b8b8-1a6419447193 storage1 C3L-00817.RNA-Seq.R2.T C3L-00817 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a50f0fbc-6696-4221-87c8-5189b3b668e0/170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R2_001.fastq.gz 4207616546 FASTQ NA a50f0fbc-6696-4221-87c8-5189b3b668e0 storage1 +C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/113be54e-a6c2-41e4-8272-7009d3e80613/08e34e38-aac1-43b4-b243-9d30c58226b7.rna_seq.genomic.gdc_realn.bam 8364861683 BAM hg38 113be54e-a6c2-41e4-8272-7009d3e80613 storage1 +C3L-00819.RNA-Seq.genomic.T.hg38 C3L-00819 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a36bcdab-0680-4731-9cb6-fe009c8cf495/45752650-9ad1-4b90-8368-6fc7a9069fd0.rna_seq.genomic.gdc_realn.bam 8580423446 BAM hg38 a36bcdab-0680-4731-9cb6-fe009c8cf495 storage1 C3L-00819.RNA-Seq.R1.A C3L-00819 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75647260-8a87-4afb-80d6-c24bceee3d65/180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R1_001.fastq.gz 3659327584 FASTQ NA 75647260-8a87-4afb-80d6-c24bceee3d65 storage1 C3L-00819.RNA-Seq.R1.T C3L-00819 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/314fa25c-3fa1-406b-a83e-184923a9a843/170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R1_001.fastq.gz 4041893731 FASTQ NA 314fa25c-3fa1-406b-a83e-184923a9a843 storage1 C3L-00819.RNA-Seq.R2.A C3L-00819 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbabf608-5e8b-4202-916e-d6ed4b3015d2/180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R2_001.fastq.gz 4213337668 FASTQ NA dbabf608-5e8b-4202-916e-d6ed4b3015d2 storage1 C3L-00819.RNA-Seq.R2.T C3L-00819 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b181b107-249a-4136-954f-0a3022387edc/170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R2_001.fastq.gz 4418417585 FASTQ NA b181b107-249a-4136-954f-0a3022387edc storage1 +C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c23fdd3-6509-4531-95e2-39c059846f3d/2edf89b1-1c0e-4596-a033-d6e04d20f66d.rna_seq.genomic.gdc_realn.bam 8444203147 BAM hg38 0c23fdd3-6509-4531-95e2-39c059846f3d storage1 C3L-00881.RNA-Seq.R1.T C3L-00881 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/061532ad-114c-49c6-bb96-1c35ce0849e6/170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3945688574 FASTQ NA 061532ad-114c-49c6-bb96-1c35ce0849e6 storage1 C3L-00881.RNA-Seq.R2.T C3L-00881 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0715a7e9-7782-4a70-893f-3b504345a2c7/170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4400702461 FASTQ NA 0715a7e9-7782-4a70-893f-3b504345a2c7 storage1 +C3L-00885.RNA-Seq.genomic.T.hg38 C3L-00885 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08b35111-c037-489c-b050-baaffa2f6615/68efa763-2fbd-4846-87e7-05554062c147.rna_seq.genomic.gdc_realn.bam 8447436791 BAM hg38 08b35111-c037-489c-b050-baaffa2f6615 storage1 C3L-00885.RNA-Seq.R1.T C3L-00885 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53c1e06a-8602-4a75-934c-c08b309cf189/170830_UNC31-K00269_0078_AHLCVMBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4089473425 FASTQ NA 53c1e06a-8602-4a75-934c-c08b309cf189 storage1 C3L-00885.RNA-Seq.R2.T C3L-00885 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b232ae8e-de8d-4846-96d6-e62606971408/170830_UNC31-K00269_0078_AHLCVMBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4338399311 FASTQ NA b232ae8e-de8d-4846-96d6-e62606971408 storage1 C3L-00893.RNA-Seq.R1.A C3L-00893 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48c56ccb-774e-4b7d-92cb-701679ef1560/171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R1_001.fastq.gz 4401515590 FASTQ NA 48c56ccb-774e-4b7d-92cb-701679ef1560 storage1 @@ -1299,6 +1329,7 @@ C3L-00927.RNA-Seq.R1.A C3L-00927 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-00927.RNA-Seq.R1.T C3L-00927 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45c4199e-9f5e-4059-a802-a1c6e62655e0/170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3710780116 FASTQ NA 45c4199e-9f5e-4059-a802-a1c6e62655e0 storage1 C3L-00927.RNA-Seq.R2.A C3L-00927 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/114a806a-0150-4c9f-a94d-e1176503c96a/180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4470037308 FASTQ NA 114a806a-0150-4c9f-a94d-e1176503c96a storage1 C3L-00927.RNA-Seq.R2.T C3L-00927 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aed7d802-d0a4-4422-a402-c0ea057d51bc/170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3999654743 FASTQ NA aed7d802-d0a4-4422-a402-c0ea057d51bc storage1 +C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6def6e24-e2a4-4a18-b1ad-c5a0c921f759/392ffa78-ab52-4eeb-964c-d1a2d06d3490.rna_seq.genomic.gdc_realn.bam 6475494604 BAM hg38 6def6e24-e2a4-4a18-b1ad-c5a0c921f759 storage1 C3L-00928.RNA-Seq.R1.T C3L-00928 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8776601-597c-4419-ab0e-c770b20442a4/170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R1_001.fastq.gz 3117828591 FASTQ NA b8776601-597c-4419-ab0e-c770b20442a4 storage1 C3L-00928.RNA-Seq.R2.T C3L-00928 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34286639-b4c7-4600-9fe2-49fe02c4fd10/170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R2_001.fastq.gz 3383277976 FASTQ NA 34286639-b4c7-4600-9fe2-49fe02c4fd10 storage1 C3L-00930.RNA-Seq.R1.T C3L-00930 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/752ef154-292d-4b3a-8dcf-37cf3498ecb8/170912_UNC31-K00269_0081_AHL3YKBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3772691344 FASTQ NA 752ef154-292d-4b3a-8dcf-37cf3498ecb8 storage1 @@ -1431,8 +1462,10 @@ C3L-01000.RNA-Seq.R1.A C3L-01000 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-01000.RNA-Seq.R1.T C3L-01000 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d36bfa58-2428-4e27-9746-0edb7b070682/180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R1_001.fastq.gz 4155612489 FASTQ NA d36bfa58-2428-4e27-9746-0edb7b070682 storage1 C3L-01000.RNA-Seq.R2.A C3L-01000 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5b739c6-d2b8-48ef-be80-dbeb2933596a/180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5002039235 FASTQ NA d5b739c6-d2b8-48ef-be80-dbeb2933596a storage1 C3L-01000.RNA-Seq.R2.T C3L-01000 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1f9fcb7-9569-49ed-a5c4-10d7f4ba73fa/180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4399334101 FASTQ NA b1f9fcb7-9569-49ed-a5c4-10d7f4ba73fa storage1 +C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b094258-d3a0-4c63-a962-7379922fbcd7/1522e63c-029f-4847-a261-6ddb648c79aa.rna_seq.genomic.gdc_realn.bam 8724107568 BAM hg38 2b094258-d3a0-4c63-a962-7379922fbcd7 storage1 C3L-01031.RNA-Seq.R1.T C3L-01031 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a26dd3d2-e43c-4e14-a1ed-3bfdf45e8a1a/180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R1_001.fastq.gz 4124718224 FASTQ NA a26dd3d2-e43c-4e14-a1ed-3bfdf45e8a1a storage1 C3L-01031.RNA-Seq.R2.T C3L-01031 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91301da0-ce18-46c8-af66-e47970a76390/180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R2_001.fastq.gz 4413825785 FASTQ NA 91301da0-ce18-46c8-af66-e47970a76390 storage1 +C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0c75e59-e3ae-4f50-ab57-508ff8470d25/196e93f1-0a02-45f5-838a-2d60eb18695c.rna_seq.genomic.gdc_realn.bam 17035648553 BAM hg38 b0c75e59-e3ae-4f50-ab57-508ff8470d25 storage1 C3L-01032.RNA-Seq.R1.T C3L-01032 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a970896-a786-4466-8b48-f0fc47eb3573/190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4897431197 FASTQ NA 7a970896-a786-4466-8b48-f0fc47eb3573 storage1 C3L-01032.RNA-Seq.R2.T C3L-01032 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/178f804a-0edc-4761-9125-5104b06a2443/190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 5416472857 FASTQ NA 178f804a-0edc-4761-9125-5104b06a2443 storage1 C3L-01032.WXS.N C3L-01032 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f5110f3-ee1b-4870-846a-e4a07daaf8c7/CPT0167270002.WholeExome.RP-1303.bam 29254406550 BAM hg19 6f5110f3-ee1b-4870-846a-e4a07daaf8c7 storage1 @@ -1442,8 +1475,10 @@ C3L-01033.RNA-Seq.R1.T C3L-01033 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3L-01033.RNA-Seq.R2.T C3L-01033 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/101f387e-adb0-41c3-b47b-697ed9e6c824/190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R2_001.fastq.gz 2532703481 FASTQ NA 101f387e-adb0-41c3-b47b-697ed9e6c824 storage1 C3L-01034.RNA-Seq.R1.T C3L-01034 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c012fbf-51f4-47cc-b6f5-a7b3a12f036d/190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R1_001.fastq.gz 6080726118 FASTQ NA 8c012fbf-51f4-47cc-b6f5-a7b3a12f036d storage1 C3L-01034.RNA-Seq.R2.T C3L-01034 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f9aa847-0e4b-4f04-98b6-c9ae16cc5353/190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R2_001.fastq.gz 6700154478 FASTQ NA 3f9aa847-0e4b-4f04-98b6-c9ae16cc5353 storage1 +C3L-01036.RNA-Seq.genomic.T.hg38 C3L-01036 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2ba9b0f-fad4-4ef3-8cb1-75f2824234ef/7cfba2e8-63e8-41c9-ae4b-f8a4b3dce4d7.rna_seq.genomic.gdc_realn.bam 11485385380 BAM hg38 e2ba9b0f-fad4-4ef3-8cb1-75f2824234ef storage1 C3L-01036.RNA-Seq.R1.T C3L-01036 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d03e3533-6c67-48c2-a635-ec324bc96beb/180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4073317106 FASTQ NA d03e3533-6c67-48c2-a635-ec324bc96beb storage1 C3L-01036.RNA-Seq.R2.T C3L-01036 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a78acbaf-7957-4de1-a5e0-a1bd7aad774e/180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4452262134 FASTQ NA a78acbaf-7957-4de1-a5e0-a1bd7aad774e storage1 +C3L-01037.RNA-Seq.genomic.T.hg38 C3L-01037 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0604c6c-b27a-4390-a849-5a28be995a3d/4a58c017-68e2-4e67-8066-136572a36e8f.rna_seq.genomic.gdc_realn.bam 11189950204 BAM hg38 a0604c6c-b27a-4390-a849-5a28be995a3d storage1 C3L-01037.RNA-Seq.R1.T C3L-01037 PDA RNA-Seq tumor 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RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe116b10-f7df-46ac-8bc5-6d74f714a258/190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R2_001.fastq.gz 4794507671 FASTQ NA fe116b10-f7df-46ac-8bc5-6d74f714a258 storage1 +C3L-01124.RNA-Seq.genomic.T.hg38 C3L-01124 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e5cc06e-3ef6-48fb-b6b7-a29560540898/1c558233-c17d-4ec8-9273-d988391b7aac.rna_seq.genomic.gdc_realn.bam 7759999178 BAM hg38 3e5cc06e-3ef6-48fb-b6b7-a29560540898 storage1 C3L-01124.RNA-Seq.R1.T C3L-01124 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34e81818-13cd-4293-8928-7b2ccf25029e/190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3634837869 FASTQ NA 34e81818-13cd-4293-8928-7b2ccf25029e storage1 C3L-01124.RNA-Seq.R2.T C3L-01124 PDA RNA-Seq tumor 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C3L-01138.RNA-Seq.R2.T C3L-01138 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44574794-ab0a-4ff0-b924-2e211433a67e/20210714_P1_A10_WB7988_plate1_S10_R2_001.fastq.gz 3525874971 FASTQ NA 44574794-ab0a-4ff0-b924-2e211433a67e storage1 C3L-01138.RNA-Seq.R2.T C3L-01138 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f88801c9-0c9b-4504-8766-7fb28da9af70/190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R2_001.fastq.gz 4674041813 FASTQ NA f88801c9-0c9b-4504-8766-7fb28da9af70 storage1 +C3L-01142.RNA-Seq.chimeric.T.hg38 C3L-01142 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae9d772b-b3fa-4ee5-b579-ef4935efd306/26fc663f-bb74-4e48-9529-0298b81f19d3.rna_seq.chimeric.gdc_realn.bam 41812454 BAM hg38 ae9d772b-b3fa-4ee5-b579-ef4935efd306 storage1 C3L-01142.RNA-Seq.R1.T C3L-01142 GBM RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e17f145-b0f4-4db5-8739-87119b0d9500/181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R1_001.fastq.gz 2746501963 FASTQ NA 7e17f145-b0f4-4db5-8739-87119b0d9500 storage1 C3L-01157.RNA-Seq.R2.T C3L-01157 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9a967f9-6406-40e3-8843-662f83c5f38d/181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ NA f9a967f9-6406-40e3-8843-662f83c5f38d storage1 +C3L-01157.RNA-Seq.transcriptome.T.hg38 C3L-01157 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/106ab42e-4006-43a3-b5c7-e42274bfc72e/fc26dfae-cbce-4128-aa1f-74fce4e0db0a.rna_seq.transcriptome.gdc_realn.bam 5573127653 BAM hg38 106ab42e-4006-43a3-b5c7-e42274bfc72e storage1 +C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7890766-18d3-427d-a2c8-2277f4ea91ed/8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.genomic.gdc_realn.bam 12188572936 BAM hg38 d7890766-18d3-427d-a2c8-2277f4ea91ed storage1 C3L-01158.RNA-Seq.R1.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ece270eb-efc7-440c-9a45-8c8000ba796c/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ NA ece270eb-efc7-440c-9a45-8c8000ba796c storage1 C3L-01158.RNA-Seq.R2.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc148b01-aa6a-40cf-ac6c-75d6bbedd59b/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ NA cc148b01-aa6a-40cf-ac6c-75d6bbedd59b storage1 C3L-01158.WXS.N C3L-01158 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c989a5e9-3ec9-4d76-9896-665db392d8fd/CPT0171560002.WholeExome.RP-1303.bam 27117657273 BAM hg19 c989a5e9-3ec9-4d76-9896-665db392d8fd storage1 C3L-01158.WXS.N.hg38 C3L-01158 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65ade05f-b8cc-4d7d-b501-cd91d08e5885/81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wxs_gdc_realn.bam 36792322242 BAM hg38 65ade05f-b8cc-4d7d-b501-cd91d08e5885 storage1 C3L-01158.WXS.T C3L-01158 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88698e11-6693-4808-9a68-754b4bade5d4/CPT0171630022.WholeExome.RP-1303.bam 58476666614 BAM hg19 88698e11-6693-4808-9a68-754b4bade5d4 storage1 +C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76ec29c6-fbcf-48a7-96ae-0d3adee6f52c/45ee9cab-619e-404f-8d91-32fa6a0f2e60.rna_seq.genomic.gdc_realn.bam 13460468845 BAM hg38 76ec29c6-fbcf-48a7-96ae-0d3adee6f52c storage1 C3L-01160.RNA-Seq.R1.T C3L-01160 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b/190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ NA f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b storage1 C3L-01160.RNA-Seq.R2.T C3L-01160 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20a9db35-056d-43aa-b71d-dea448930ef0/190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ NA 20a9db35-056d-43aa-b71d-dea448930ef0 storage1 C3L-01160.WXS.N C3L-01160 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afa7c130-3731-41ca-a718-fbdf0600a69a/CPT0167290002.WholeExome.RP-1303.bam 24421148529 BAM hg19 afa7c130-3731-41ca-a718-fbdf0600a69a storage1 @@ -1578,6 +1648,8 @@ C3L-01210.WGS.Nbc.hg38 C3L-01210 AML WGS buccal_normal /storage1/fs1/dinglab/Act C3L-01210.WGS.Tbm.hg38 C3L-01210 AML WGS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a8f7279-b2aa-4861-b5b2-6e49b38b6d78/a4379688-5a88-45a9-9856-d9a9bd56a53c_wgs_gdc_realn.bam 106084112316 BAM hg38 3a8f7279-b2aa-4861-b5b2-6e49b38b6d78 storage1 C3L-01210.WXS.Nbc.hg38 C3L-01210 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f122fdef-99c4-4d86-be9f-080233cf4113/d211af53-0fe2-4296-986b-b469767aa8d4_wxs_gdc_realn.bam 38260840505 BAM hg38 f122fdef-99c4-4d86-be9f-080233cf4113 storage1 C3L-01210.WXS.Tbm.hg38 C3L-01210 AML WXS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b71ffbe9-4c35-49bc-958d-406ec97bfb7b/a4379688-5a88-45a9-9856-d9a9bd56a53c_wxs_gdc_realn.bam 37173298863 BAM hg38 b71ffbe9-4c35-49bc-958d-406ec97bfb7b storage1 +C3L-01232.RNA-Seq.R1.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b412bf7-dfe6-46ce-8351-540dfc2698d5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ NA 1b412bf7-dfe6-46ce-8351-540dfc2698d5 storage1 +C3L-01232.RNA-Seq.R2.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64276f84-695c-4a6a-bde8-0b0378f17656/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ NA 64276f84-695c-4a6a-bde8-0b0378f17656 storage1 C3L-01232.WXS.N.hg38 C3L-01232 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a65f1db8-170a-4ec2-a20b-e6deff964e2c/54352f31-de32-4a52-b0c0-1ab882496fc3_wxs_gdc_realn.bam 45532138913 BAM hg38 a65f1db8-170a-4ec2-a20b-e6deff964e2c storage1 C3L-01232.WXS.T.hg38 C3L-01232 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6da28b7b-b148-4c49-97ee-d4587b058a46/218349a8-16e2-4bcd-9c9a-690bc5152441_wxs_gdc_realn.bam 32795800931 BAM hg38 6da28b7b-b148-4c49-97ee-d4587b058a46 storage1 C3L-01237.RNA-Seq.R1.A C3L-01237 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba80215c-4900-4015-9279-3f316050e22e/190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R1_001.fastq.gz 3867848237 FASTQ NA ba80215c-4900-4015-9279-3f316050e22e storage1 @@ -1719,8 +1791,12 @@ C3L-01313.RNA-Seq.R1.A C3L-01313 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-01313.RNA-Seq.R1.T C3L-01313 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0138a8d4-1eda-45fc-9516-eee215e5cebc/171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R1_001.fastq.gz 3527851467 FASTQ NA 0138a8d4-1eda-45fc-9516-eee215e5cebc storage1 C3L-01313.RNA-Seq.R2.A C3L-01313 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c617733c-0b14-473b-a21d-fd0849bac86e/171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 4071605231 FASTQ NA c617733c-0b14-473b-a21d-fd0849bac86e storage1 C3L-01313.RNA-Seq.R2.T C3L-01313 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6018ec3-38ff-4147-9cac-d0a9fea156af/171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R2_001.fastq.gz 3424569482 FASTQ NA d6018ec3-38ff-4147-9cac-d0a9fea156af storage1 +C3L-01327.RNA-Seq.chimeric.T.hg38 C3L-01327 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c17058b-6d36-43c4-a2d3-bb3e1d26e234/c384ac16-e8e5-4fe9-868a-0c09c4d46f07.rna_seq.chimeric.gdc_realn.bam 55108653 BAM hg38 7c17058b-6d36-43c4-a2d3-bb3e1d26e234 storage1 C3L-01327.RNA-Seq.R1.T C3L-01327 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a69a48b-eeeb-473c-9ff9-9ea09cb43090/170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3051942729 FASTQ NA 2a69a48b-eeeb-473c-9ff9-9ea09cb43090 storage1 C3L-01327.RNA-Seq.R2.T C3L-01327 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00d4635f-27ee-4351-a39c-230ebb366fd7/170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3385695454 FASTQ NA 00d4635f-27ee-4351-a39c-230ebb366fd7 storage1 +C3L-01327.RNA-Seq.transcriptome.T.hg38 C3L-01327 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84ae0dde-4387-49b1-acdc-735bb4261071/c384ac16-e8e5-4fe9-868a-0c09c4d46f07.rna_seq.transcriptome.gdc_realn.bam 6350855193 BAM hg38 84ae0dde-4387-49b1-acdc-735bb4261071 storage1 +C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77b18d72-f08c-47ec-a786-d7a2ecb5c1b6/f1274a56-b5b2-4316-999f-5de0211fcf37.rna_seq.genomic.gdc_realn.bam 11353910760 BAM hg38 77b18d72-f08c-47ec-a786-d7a2ecb5c1b6 storage1 +C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3da74dc6-380b-4de0-8f9e-221a3cf79a4a/51a03355-1437-48f7-ac14-2c09f83cd89c.rna_seq.genomic.gdc_realn.bam 9451583241 BAM hg38 3da74dc6-380b-4de0-8f9e-221a3cf79a4a storage1 C3L-01328.RNA-Seq.R1.A C3L-01328 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/140c920a-1034-4bd0-b3ae-cda59eaf729d/180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4773594378 FASTQ NA 140c920a-1034-4bd0-b3ae-cda59eaf729d storage1 C3L-01328.RNA-Seq.R1.T C3L-01328 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50af033e-efd9-4223-9105-cec0998a7665/170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3929468307 FASTQ NA 50af033e-efd9-4223-9105-cec0998a7665 storage1 C3L-01328.RNA-Seq.R2.A C3L-01328 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91373e81-5d8e-4e0e-b776-da23ccc8165e/180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5326317172 FASTQ NA 91373e81-5d8e-4e0e-b776-da23ccc8165e storage1 @@ -1757,6 +1833,8 @@ C3L-01427.WGS.Nbc.hg38 C3L-01427 AML WGS buccal_normal /storage1/fs1/m.wyczalkow C3L-01427.WGS.Tpb.hg38 C3L-01427 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e6e8a93-e0e6-4259-9227-345d4526b521/cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wgs_gdc_realn.bam 130747771504 BAM hg38 4e6e8a93-e0e6-4259-9227-345d4526b521 storage1 C3L-01427.WXS.Nbc.hg38 C3L-01427 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9de71de-5b62-4097-b051-80bc9e639eec/3a131fec-e5c3-4f69-a650-79f405d9122f_wxs_gdc_realn.bam 34638950956 BAM hg38 c9de71de-5b62-4097-b051-80bc9e639eec storage1 C3L-01427.WXS.Tpb.hg38 C3L-01427 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/272ef040-6001-45d8-8805-ae7028ab00ed/cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wxs_gdc_realn.bam 37273526505 BAM hg38 272ef040-6001-45d8-8805-ae7028ab00ed storage1 +C3L-01453.RNA-Seq.genomic.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60d2f5c3-cace-4e07-96ed-504c20592200/51fc578f-5582-47bd-8652-1841fe392ebd.rna_seq.genomic.gdc_realn.bam 10070683229 BAM hg38 60d2f5c3-cace-4e07-96ed-504c20592200 storage1 +C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c297eb07-04bd-4093-8dc5-0328f04c3073/60f7695e-1f45-4701-a9fa-8090d8c05234.rna_seq.genomic.gdc_realn.bam 8165927092 BAM hg38 c297eb07-04bd-4093-8dc5-0328f04c3073 storage1 C3L-01453.RNA-Seq.R1.A C3L-01453 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6205c77-f737-451c-875e-f652c4e5512d/180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 4551298023 FASTQ NA f6205c77-f737-451c-875e-f652c4e5512d storage1 C3L-01453.RNA-Seq.R1.T C3L-01453 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c281e89f-9c99-416f-acec-621a455321c1/171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R1_001.fastq.gz 3644119512 FASTQ NA c281e89f-9c99-416f-acec-621a455321c1 storage1 C3L-01453.RNA-Seq.R2.A C3L-01453 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c23d217-08a0-4c70-87d6-a8f654143a21/180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 5028019962 FASTQ NA 3c23d217-08a0-4c70-87d6-a8f654143a21 storage1 @@ -1817,6 +1895,7 @@ C3L-01558.WGS.N.hg38 C3L-01558 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3L-01558.WGS.T.hg38 C3L-01558 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8678e299-7b61-4a05-80a6-9d99bca86dd3/f849a79f-ed8e-4585-8ed7-621eb60f38cd_wgs_gdc_realn.bam 77063641349 BAM hg38 8678e299-7b61-4a05-80a6-9d99bca86dd3 storage1 C3L-01560.RNA-Seq.R1.T C3L-01560 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db9b8954-51ad-4c21-8c8e-3f2469dfa347/170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4641575499 FASTQ NA db9b8954-51ad-4c21-8c8e-3f2469dfa347 storage1 C3L-01560.RNA-Seq.R2.T C3L-01560 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/accf0284-6fcf-48c4-8438-5d31e3b84768/170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5081432549 FASTQ NA accf0284-6fcf-48c4-8438-5d31e3b84768 storage1 +C3L-01598.RNA-Seq.genomic.T.hg38 C3L-01598 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ef13c16-b905-4b2c-951a-c39cecde06ca/76820715-bd07-43e6-8563-c8878332d448.rna_seq.genomic.gdc_realn.bam 9943024108 BAM hg38 2ef13c16-b905-4b2c-951a-c39cecde06ca storage1 C3L-01598.RNA-Seq.R1.T C3L-01598 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db006b75-16be-4d3c-8eb1-7f37bb7992a5/171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 4147745309 FASTQ NA db006b75-16be-4d3c-8eb1-7f37bb7992a5 storage1 C3L-01598.RNA-Seq.R2.T C3L-01598 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a133ab8-8d0f-4a87-abde-f9e1fe9ac3bf/171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 4720778051 FASTQ NA 6a133ab8-8d0f-4a87-abde-f9e1fe9ac3bf storage1 C3L-01599.RNA-Seq.R1.T C3L-01599 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09f10941-42fe-47bb-a170-3fa0970bead9/20210723_P2_E10_WB7988-plate2_S58_R1_001.fastq.gz 4969455566 FASTQ NA 09f10941-42fe-47bb-a170-3fa0970bead9 storage1 @@ -1861,6 +1940,8 @@ C3L-01633.RNA-Seq.R1.T C3L-01633 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-01633.RNA-Seq.R1.T C3L-01633 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffe93cac-8d42-4933-81ce-05d1f33a19e9/20210729_P3_H10_WB7988-Plate3_S94_R1_001.fastq.gz 6096845634 FASTQ NA ffe93cac-8d42-4933-81ce-05d1f33a19e9 storage1 C3L-01633.RNA-Seq.R2.T C3L-01633 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8458ced5-99a4-4695-b82f-ab063ba599c8/20210729_P3_H10_WB7988-Plate3_S94_R2_001.fastq.gz 6348850234 FASTQ NA 8458ced5-99a4-4695-b82f-ab063ba599c8 storage1 C3L-01633.RNA-Seq.R2.T C3L-01633 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9624b90f-a7c0-4a46-9317-a2a0cf016fe8/171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 4766776796 FASTQ NA 9624b90f-a7c0-4a46-9317-a2a0cf016fe8 storage1 +C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e29fc9d5-e08c-44d7-9612-a6309a767e50/171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R1_001.fastq.gz 4127858067 FASTQ NA e29fc9d5-e08c-44d7-9612-a6309a767e50 storage1 C3L-01637.RNA-Seq.R2.A C3L-01637 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8047c467-d41a-4ecb-9698-1dd8007aa4a8/180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 4460444987 FASTQ NA 8047c467-d41a-4ecb-9698-1dd8007aa4a8 storage1 @@ -1871,6 +1952,7 @@ C3L-01639.RNA-Seq.R1.T C3L-01639 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-01639.RNA-Seq.R2.A C3L-01639 UCEC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/beb2f356-caaf-41d2-8bdb-3b7a63094247/180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4617092075 FASTQ NA beb2f356-caaf-41d2-8bdb-3b7a63094247 storage1 C3L-01639.RNA-Seq.R2.T C3L-01639 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b6b17e4-cffd-48ed-9db2-751bfdb8b22a/20210729_P3_H1_WB7988-Plate3_S85_R2_001.fastq.gz 7296880555 FASTQ NA 8b6b17e4-cffd-48ed-9db2-751bfdb8b22a storage1 C3L-01639.RNA-Seq.R2.T C3L-01639 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d511897-c67c-4325-b924-c90d6d6b38d3/171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 5349775554 FASTQ NA 8d511897-c67c-4325-b924-c90d6d6b38d3 storage1 +C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76544f8a-da30-425d-96d9-dc84292c58a1/f6f916cf-5d2d-4908-b294-4ac79b803e7c.rna_seq.genomic.gdc_realn.bam 9830709164 BAM hg38 76544f8a-da30-425d-96d9-dc84292c58a1 storage1 C3L-01662.RNA-Seq.R1.T C3L-01662 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8342ecf-6779-436c-bcfa-55abd631e62e/171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 4293253378 FASTQ NA b8342ecf-6779-436c-bcfa-55abd631e62e storage1 C3L-01662.RNA-Seq.R2.T C3L-01662 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a55017a7-697e-4dba-b4db-e3e7c6399e88/171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4707365099 FASTQ NA a55017a7-697e-4dba-b4db-e3e7c6399e88 storage1 C3L-01663.RNA-Seq.R1.A C3L-01663 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c2f8c50-d1f7-452f-b323-5ec3d9e85455/180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3096565657 FASTQ NA 0c2f8c50-d1f7-452f-b323-5ec3d9e85455 storage1 @@ -1907,8 +1989,11 @@ C3L-01683.RNA-Seq.R1.A C3L-01683 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3L-01683.RNA-Seq.R1.T C3L-01683 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ae50b60-0799-4883-9569-f4cca6b21954/171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4185079045 FASTQ NA 8ae50b60-0799-4883-9569-f4cca6b21954 storage1 C3L-01683.RNA-Seq.R2.A C3L-01683 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f797dd82-4b0f-4bac-b00b-e03ef2ecbec9/171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4713960213 FASTQ NA f797dd82-4b0f-4bac-b00b-e03ef2ecbec9 storage1 C3L-01683.RNA-Seq.R2.T C3L-01683 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cefddaae-c3db-4a31-925a-32c6dc095613/171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4637712849 FASTQ NA cefddaae-c3db-4a31-925a-32c6dc095613 storage1 +C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db3d5524-f3ed-406a-ab37-55e5b518339e/b85ed619-c7b4-4d0f-9aed-8af298d5836f.rna_seq.genomic.gdc_realn.bam 12240536150 BAM hg38 db3d5524-f3ed-406a-ab37-55e5b518339e storage1 +C3L-01689.RNA-Seq.genomic.T.hg38 C3L-01689 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20e771da-dcce-406a-9a70-713830fe6656/8202a451-384b-486f-97e4-eb105ef74cf0.rna_seq.genomic.gdc_realn.bam 9679393458 BAM hg38 20e771da-dcce-406a-9a70-713830fe6656 storage1 C3L-01689.RNA-Seq.R1.A C3L-01689 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e215877-8133-4956-9365-afcc86b208e6/180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R1_001.fastq.gz 4885591906 FASTQ NA 2e215877-8133-4956-9365-afcc86b208e6 storage1 C3L-01689.RNA-Seq.R1.T C3L-01689 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6fa2be8-70e6-4a3b-82a4-911ee2a935c7/171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R1_001.fastq.gz 4423527277 FASTQ NA c6fa2be8-70e6-4a3b-82a4-911ee2a935c7 storage1 C3L-01689.RNA-Seq.R2.A C3L-01689 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dcb43335-d796-4abf-b95e-0519563eba77/180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R2_001.fastq.gz 5133168728 FASTQ NA dcb43335-d796-4abf-b95e-0519563eba77 storage1 @@ -1934,8 +2019,11 @@ C3L-01700.WGS.Nbc.hg38 C3L-01700 AML WGS buccal_normal /storage1/fs1/dinglab/Act C3L-01700.WGS.Tbm.hg38 C3L-01700 AML WGS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0dc159d-ba72-46f7-a292-b64202b41de3/033d0e2c-f775-4175-af88-e5ee38b6f78d_wgs_gdc_realn.bam 87131472032 BAM hg38 b0dc159d-ba72-46f7-a292-b64202b41de3 storage1 C3L-01700.WXS.Nbc.hg38 C3L-01700 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/676720f7-87ab-4d27-b690-8f1cb45a3553/7516f386-c88b-4bb7-8387-3973bf607a6b_wxs_gdc_realn.bam 36212867962 BAM hg38 676720f7-87ab-4d27-b690-8f1cb45a3553 storage1 C3L-01700.WXS.Tbm.hg38 C3L-01700 AML WXS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/373bc943-3146-4c77-920e-ce7624d3eb57/033d0e2c-f775-4175-af88-e5ee38b6f78d_wxs_gdc_realn.bam 37431702287 BAM hg38 373bc943-3146-4c77-920e-ce7624d3eb57 storage1 +C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a949882f-65c2-40e4-a9c9-33c0baa11e44/90f3f026-abd6-4464-87dc-0daa7ef1ac4e.rna_seq.genomic.gdc_realn.bam 9541160140 BAM hg38 a949882f-65c2-40e4-a9c9-33c0baa11e44 storage1 C3L-01702.RNA-Seq.R1.T C3L-01702 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8bbcd02-1dbd-4841-9abf-147a007025ab/171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R1_001.fastq.gz 4259382174 FASTQ NA a8bbcd02-1dbd-4841-9abf-147a007025ab storage1 C3L-01702.RNA-Seq.R2.T C3L-01702 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6ed8fb-e80c-497b-aa15-fff187d6e3a7/171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R2_001.fastq.gz 4636593997 FASTQ NA 2a6ed8fb-e80c-497b-aa15-fff187d6e3a7 storage1 +C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80246b5c-c745-4f2b-96a2-e66642c874c7/f0ab02e2-2e03-4249-8dd8-146fa65bb451.rna_seq.genomic.gdc_realn.bam 8063219263 BAM hg38 80246b5c-c745-4f2b-96a2-e66642c874c7 storage1 +C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30af76b3-c2d0-467e-9f88-8285cf0c27cc/ca654cfd-9a89-4b6d-8737-191e6a0ce6cf.rna_seq.genomic.gdc_realn.bam 9165693676 BAM hg38 30af76b3-c2d0-467e-9f88-8285cf0c27cc storage1 C3L-01703.RNA-Seq.R1.A C3L-01703 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be348100-73f3-4d89-99f1-2776e58503ef/180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R1_001.fastq.gz 3645287458 FASTQ NA be348100-73f3-4d89-99f1-2776e58503ef storage1 C3L-01703.RNA-Seq.R1.T C3L-01703 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/007cdbeb-bf0e-4fd4-9474-6946c1b1c757/171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R1_001.fastq.gz 3842278146 FASTQ NA 007cdbeb-bf0e-4fd4-9474-6946c1b1c757 storage1 C3L-01703.RNA-Seq.R2.A C3L-01703 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7dd80aa-f652-4fad-a6de-425cebcd7616/180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4079220631 FASTQ NA b7dd80aa-f652-4fad-a6de-425cebcd7616 storage1 @@ -1964,8 +2052,10 @@ C3L-01833.RNA-Seq.R1.T C3L-01833 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-01833.RNA-Seq.R1.T C3L-01833 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5bc8af46-2f1d-4e9f-96c1-31f1e0d584cb/20210714_P1_A6_WB7988_plate1_S6_R1_001.fastq.gz 7227952247 FASTQ NA 5bc8af46-2f1d-4e9f-96c1-31f1e0d584cb storage1 C3L-01833.RNA-Seq.R2.T C3L-01833 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5382cf03-129b-4518-a0e8-62e8897f4013/20210714_P1_A6_WB7988_plate1_S6_R2_001.fastq.gz 7547116685 FASTQ NA 5382cf03-129b-4518-a0e8-62e8897f4013 storage1 C3L-01833.RNA-Seq.R2.T C3L-01833 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1ac3838-34f1-4b28-ab69-c4c2a8b92594/171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R2_001.fastq.gz 4378439977 FASTQ NA c1ac3838-34f1-4b28-ab69-c4c2a8b92594 storage1 +C3L-01834.RNA-Seq.chimeric.T.hg38 C3L-01834 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/63e9bfc7-a78d-4ae6-98a5-34d3ad1cef86/0bd61f0c-5023-49e8-978d-758d69e12e07.rna_seq.chimeric.gdc_realn.bam 107300205 BAM hg38 63e9bfc7-a78d-4ae6-98a5-34d3ad1cef86 storage1 C3L-01834.RNA-Seq.R1.T C3L-01834 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bddce258-f479-4064-a83d-48bd5125aa0b/180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4205998241 FASTQ NA bddce258-f479-4064-a83d-48bd5125aa0b storage1 C3L-01834.RNA-Seq.R2.T C3L-01834 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ee9ed9c-5178-49a5-b72c-b8ca17b7f496/180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4708620005 FASTQ NA 0ee9ed9c-5178-49a5-b72c-b8ca17b7f496 storage1 +C3L-01834.RNA-Seq.transcriptome.T.hg38 C3L-01834 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5afef067-5da7-4570-a70a-9d252b72cb9e/0bd61f0c-5023-49e8-978d-758d69e12e07.rna_seq.transcriptome.gdc_realn.bam 9387694402 BAM hg38 5afef067-5da7-4570-a70a-9d252b72cb9e storage1 C3L-01836.RNA-Seq.R1.A C3L-01836 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2aeeecab-38f1-4ac1-b075-46ae5151bd1a/171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ NA 2aeeecab-38f1-4ac1-b075-46ae5151bd1a storage1 C3L-01836.RNA-Seq.R1.T C3L-01836 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3e2839a-6453-485b-9a7d-e085f009d98a/171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ NA a3e2839a-6453-485b-9a7d-e085f009d98a storage1 C3L-01836.RNA-Seq.R1.T.HET_oly41Y C3L-01836 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/768aa7e6-69e3-4feb-8b45-1c6858776a7d/200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ NA 768aa7e6-69e3-4feb-8b45-1c6858776a7d storage1 @@ -2020,8 +2110,10 @@ C3L-01885.RNA-Seq.R1.A C3L-01885 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-01885.RNA-Seq.R1.T C3L-01885 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8575eff6-7058-4a99-a065-66fa758b86a4/171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4220191441 FASTQ NA 8575eff6-7058-4a99-a065-66fa758b86a4 storage1 C3L-01885.RNA-Seq.R2.A C3L-01885 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e94b33d-c89e-4bd3-9066-f3cc316401c3/171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R2_001.fastq.gz 4129271682 FASTQ NA 4e94b33d-c89e-4bd3-9066-f3cc316401c3 storage1 C3L-01885.RNA-Seq.R2.T C3L-01885 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c791a7fd-0554-4433-9ad9-9ec6349d8abc/171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4439395784 FASTQ NA c791a7fd-0554-4433-9ad9-9ec6349d8abc storage1 +C3L-01887.RNA-Seq.chimeric.T.hg38 C3L-01887 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbfaedaf-d89f-410c-b7d6-5f7821d69804/ecdfe25c-9d03-449b-9c2d-22081e956c18.rna_seq.chimeric.gdc_realn.bam 34865776 BAM hg38 bbfaedaf-d89f-410c-b7d6-5f7821d69804 storage1 C3L-01887.RNA-Seq.R1.T C3L-01887 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c22860-6d90-470c-afbb-b47b75db5f09/171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R1_001.fastq.gz 3752130477 FASTQ NA d3c22860-6d90-470c-afbb-b47b75db5f09 storage1 C3L-01887.RNA-Seq.R2.T C3L-01887 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d80520b-a0a8-4768-a8c0-2b23b35b0341/171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R2_001.fastq.gz 3825927354 FASTQ NA 7d80520b-a0a8-4768-a8c0-2b23b35b0341 storage1 +C3L-01887.RNA-Seq.transcriptome.T.hg38 C3L-01887 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/328ffde4-e06c-44df-98e9-bdb7c61aef69/ecdfe25c-9d03-449b-9c2d-22081e956c18.rna_seq.transcriptome.gdc_realn.bam 7497227309 BAM hg38 328ffde4-e06c-44df-98e9-bdb7c61aef69 storage1 C3L-01889.RNA-Seq.R1.A C3L-01889 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b451f11f-f844-4236-9ba0-116e8a60eb8e/171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R1_001.fastq.gz 2593602299 FASTQ NA b451f11f-f844-4236-9ba0-116e8a60eb8e storage1 C3L-01889.RNA-Seq.R1.T C3L-01889 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82fdf3eb-3eb7-4306-b018-0301e1a5d687/171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 4426449980 FASTQ NA 82fdf3eb-3eb7-4306-b018-0301e1a5d687 storage1 C3L-01889.RNA-Seq.R2.A C3L-01889 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/682eb12d-02fc-48e0-b83e-fb4dbeac16a6/171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R2_001.fastq.gz 2825476482 FASTQ NA 682eb12d-02fc-48e0-b83e-fb4dbeac16a6 storage1 @@ -2080,6 +2172,7 @@ C3L-01967.RNA-Seq.R1.T C3L-01967 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-01967.RNA-Seq.R2.A C3L-01967 UCEC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fccdf1bc-36b2-4923-b46d-591968fc7c8b/180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R2_001.fastq.gz 4491544632 FASTQ NA fccdf1bc-36b2-4923-b46d-591968fc7c8b storage1 C3L-01967.RNA-Seq.R2.T C3L-01967 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22a3da5a-689e-494d-be36-0f9c0b42a263/171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 4970728519 FASTQ NA 22a3da5a-689e-494d-be36-0f9c0b42a263 storage1 C3L-01967.RNA-Seq.R2.T C3L-01967 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95c0b8d9-5c4c-40db-8544-7eeeb9fbedfc/20210723_P2_A8_WB7988-plate2_S8_R2_001.fastq.gz 3840259151 FASTQ NA 95c0b8d9-5c4c-40db-8544-7eeeb9fbedfc storage1 +C3L-01971.RNA-Seq.genomic.T.hg38 C3L-01971 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52197bf3-60ad-4ed5-b79f-aea18252f225/fc81ee9a-1c71-4cc9-8397-71db50e90529.rna_seq.genomic.gdc_realn.bam 8683521711 BAM hg38 52197bf3-60ad-4ed5-b79f-aea18252f225 storage1 C3L-01971.RNA-Seq.R1.T C3L-01971 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99349916-a315-4682-9e02-d9afda5b73b3/171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3546049460 FASTQ NA 99349916-a315-4682-9e02-d9afda5b73b3 storage1 C3L-01971.RNA-Seq.R2.T C3L-01971 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04d12709-918a-43df-82c7-07bf8c3e52f3/171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3998905656 FASTQ NA 04d12709-918a-43df-82c7-07bf8c3e52f3 storage1 C3L-01976.RNA-Seq.R1.A C3L-01976 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/267560c1-339b-41b6-98b4-64fc6f6d3b32/180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 4344531327 FASTQ NA 267560c1-339b-41b6-98b4-64fc6f6d3b32 storage1 @@ -2090,18 +2183,26 @@ C3L-01978.RNA-Seq.R1.A C3L-01978 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-01978.RNA-Seq.R1.T C3L-01978 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b31b66f-409d-46bd-8dbb-b15fac6a8758/190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3819803528 FASTQ NA 2b31b66f-409d-46bd-8dbb-b15fac6a8758 storage1 C3L-01978.RNA-Seq.R2.A C3L-01978 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38933543-6714-41fb-9689-2cfbb8a1a0ae/190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R2_001.fastq.gz 4895935748 FASTQ NA 38933543-6714-41fb-9689-2cfbb8a1a0ae storage1 C3L-01978.RNA-Seq.R2.T C3L-01978 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3b47899-289b-4f3a-9f10-c3c5120bb9b7/190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4399810119 FASTQ NA f3b47899-289b-4f3a-9f10-c3c5120bb9b7 storage1 +C3L-02041.RNA-Seq.chimeric.T.hg38 C3L-02041 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd2339c2-e504-455d-a614-d2e0673aa665/75774427-0141-4f32-a16b-88e39ca26928.rna_seq.chimeric.gdc_realn.bam 48378182 BAM hg38 dd2339c2-e504-455d-a614-d2e0673aa665 storage1 C3L-02041.RNA-Seq.R1.T C3L-02041 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1da7dff2-8bad-4a10-9b89-de71e20efb67/180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R1_001.fastq.gz 3831582154 FASTQ NA 1da7dff2-8bad-4a10-9b89-de71e20efb67 storage1 C3L-02041.RNA-Seq.R2.T C3L-02041 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5bb2b2d1-b7a2-4028-84bd-0b8603028e4b/180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R2_001.fastq.gz 4207462558 FASTQ NA 5bb2b2d1-b7a2-4028-84bd-0b8603028e4b storage1 +C3L-02041.RNA-Seq.transcriptome.T.hg38 C3L-02041 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7dc808a-ad7c-4ce9-8ade-c972ad4c9fc1/75774427-0141-4f32-a16b-88e39ca26928.rna_seq.transcriptome.gdc_realn.bam 7292240460 BAM hg38 e7dc808a-ad7c-4ce9-8ade-c972ad4c9fc1 storage1 +C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a/5ba4631a-55a0-4e2e-a28c-10c1c30aeabf.rna_seq.genomic.gdc_realn.bam 7203899740 BAM hg38 1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a storage1 C3L-02109.RNA-Seq.R1.T C3L-02109 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0143fe73-deea-484e-8fd5-6bdf9fd73640/180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R1_001.fastq.gz 3150820705 FASTQ NA 0143fe73-deea-484e-8fd5-6bdf9fd73640 storage1 C3L-02109.RNA-Seq.R2.T C3L-02109 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02819eb9-c422-4438-a0b7-44bbfbb1bec0/180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R2_001.fastq.gz 3461729862 FASTQ NA 02819eb9-c422-4438-a0b7-44bbfbb1bec0 storage1 +C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79252f6d-aa9f-4374-abaa-2569940b15ab/52b3b187-4790-4e67-b91d-e0f32244dad5.rna_seq.genomic.gdc_realn.bam 9541545332 BAM hg38 79252f6d-aa9f-4374-abaa-2569940b15ab storage1 +C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d468da7-ec23-4b65-837c-54e131ae1660/2cbf9ecc-ed0c-41e0-b556-4bb8b9392ca6.rna_seq.genomic.gdc_realn.bam 9666997311 BAM hg38 2d468da7-ec23-4b65-837c-54e131ae1660 storage1 C3L-02112.RNA-Seq.R1.A C3L-02112 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/574ea695-bb46-4fc7-9680-7ffd773b2f72/180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 4315806975 FASTQ NA 574ea695-bb46-4fc7-9680-7ffd773b2f72 storage1 C3L-02112.RNA-Seq.R1.T C3L-02112 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3450378b-d704-4637-b48b-acf54fd1485b/180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R1_001.fastq.gz 4221573662 FASTQ NA 3450378b-d704-4637-b48b-acf54fd1485b storage1 C3L-02112.RNA-Seq.R2.A C3L-02112 PDA RNA-Seq tissue_normal 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C3L-02515 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1412293-32c8-4901-96f6-48d7cae2cc8e/190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R2_001.fastq.gz 3041179897 FASTQ NA b1412293-32c8-4901-96f6-48d7cae2cc8e storage1 C3L-02515.RNA-Seq.R2.T C3L-02515 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1621cf0d-6ab3-44bb-b617-4606fba642b0/190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R2_001.fastq.gz 5015581215 FASTQ NA 1621cf0d-6ab3-44bb-b617-4606fba642b0 storage1 +C3L-02542.RNA-Seq.chimeric.T.hg38 C3L-02542 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdc601d5-bda5-45d9-9c1b-d580802eb5bd/5d9c5c93-6e90-4703-a956-0c1127804984.rna_seq.chimeric.gdc_realn.bam 33615029 BAM hg38 bdc601d5-bda5-45d9-9c1b-d580802eb5bd storage1 C3L-02542.RNA-Seq.R1.T C3L-02542 GBM RNA-Seq tumor 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RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8148ef7-a85c-4263-9ba0-7af1b18eac26/190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R2_001.fastq.gz 4223841174 FASTQ NA f8148ef7-a85c-4263-9ba0-7af1b18eac26 storage1 C3L-02602.RNA-Seq.R2.T C3L-02602 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/112bfd35-f6a1-425d-96c4-b123f852ae4b/181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 5058612340 FASTQ NA 112bfd35-f6a1-425d-96c4-b123f852ae4b storage1 C3L-02602.RNA-Seq.R2.T C3L-02602 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0fafdd0-190b-40cb-b63c-003d0c7b4e5e/20210723_P2_C1_WB7988-plate2_S25_R2_001.fastq.gz 7436271333 FASTQ NA d0fafdd0-190b-40cb-b63c-003d0c7b4e5e storage1 +C3L-02604.RNA-Seq.genomic.T.hg38 C3L-02604 PDA RNA-Seq tumor 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RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d43fb6ff-5fdf-4c7d-980a-36751852488a/190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R2_001.fastq.gz 3795486983 FASTQ NA d43fb6ff-5fdf-4c7d-980a-36751852488a storage1 C3L-02629.RNA-Seq.R2.T C3L-02629 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d571cdec-01e1-4674-8842-18f97f51ba8e/190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R2_001.fastq.gz 4553845696 FASTQ NA d571cdec-01e1-4674-8842-18f97f51ba8e storage1 +C3L-02642.RNA-Seq.chimeric.T.hg38 C3L-02642 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b53ef791-3765-41eb-8fcc-4584211f9218/71d3f3ec-6a82-4497-895c-86cd6b27ea44.rna_seq.chimeric.gdc_realn.bam 44637224 BAM hg38 b53ef791-3765-41eb-8fcc-4584211f9218 storage1 C3L-02642.RNA-Seq.R1.T C3L-02642 GBM RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d691a770-edf9-435f-9288-c9139d4c9f4c/6cdbd613-0752-40a2-9347-582356daf34f_wxs_gdc_realn.bam 37600543856 BAM hg38 d691a770-edf9-435f-9288-c9139d4c9f4c storage1 C3L-02644.WXS.T.hg38 C3L-02644 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e996952c-e610-4e7e-af08-31671e9e9d7b/46bef5ac-320b-47da-8f0b-ba57db403534_wxs_gdc_realn.bam 23551420409 BAM hg38 e996952c-e610-4e7e-af08-31671e9e9d7b storage1 C3L-02646.RNA-Seq.R1.T C3L-02646 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36760be8-bc8c-4f1f-bbb5-e7666c6d80ac/190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R1_001.fastq.gz 3114636179 FASTQ NA 36760be8-bc8c-4f1f-bbb5-e7666c6d80ac storage1 @@ -2518,6 +2638,8 @@ C3L-02661.RNA-Seq.R1.A C3L-02661 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3L-02661.RNA-Seq.R1.T C3L-02661 LUAD RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a0d4a66-5975-440b-97bf-4fb195a27398/20210729_P3_C9_WB7988-Plate3_S33_R2_001.fastq.gz 7675178438 FASTQ NA 2a0d4a66-5975-440b-97bf-4fb195a27398 storage1 @@ -2572,6 +2703,8 @@ C3L-02802.RNA-Seq.R1.T C3L-02802 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-02802.RNA-Seq.R2.T C3L-02802 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06e16c82-9218-434d-8e82-3af32f30c2aa/20210729_P3_H6_WB7988-Plate3_S90_R2_001.fastq.gz 6509016362 FASTQ NA 06e16c82-9218-434d-8e82-3af32f30c2aa storage1 C3L-02802.RNA-Seq.R2.T C3L-02802 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecf64c63-45b2-4d74-a4c6-04042fa0c697/190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R2_001.fastq.gz 4774861744 FASTQ NA ecf64c63-45b2-4d74-a4c6-04042fa0c697 storage1 C3L-02802.WGS.T C3L-02802 UCEC WGS tumor 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C3L-02888.WXS.T.BIOTEXT_1w1zjyR.hg38 C3L-02888 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7031786c-5582-4d21-a380-423077b3e35c/9108d26c-4d40-4d63-98e5-7666ceb9e36c_wxs_gdc_realn.bam 30987766785 BAM hg38 7031786c-5582-4d21-a380-423077b3e35c storage1 C3L-02888.WXS.T.BIOTEXT_YEpB6KK.hg38 C3L-02888 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70c43eaa-9e3d-43ca-bca8-ffb239508b44/e7d75cba-4f43-4692-91fc-85b15c7fec47_wxs_gdc_realn.bam 33430916634 BAM hg38 70c43eaa-9e3d-43ca-bca8-ffb239508b44 storage1 C3L-02888.WXS.T.BIOTEXT_Z6OD4LJ.hg38 C3L-02888 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46a34576-271e-43a3-9c02-a238ac35e02d/3285e42d-f066-42a4-a5b7-073132976f88_wxs_gdc_realn.bam 51339995298 BAM hg38 46a34576-271e-43a3-9c02-a238ac35e02d storage1 +C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/516c640a-c178-4bd0-87e8-203ae1af4ff3/181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R1_001.fastq.gz 3824514385 FASTQ NA 516c640a-c178-4bd0-87e8-203ae1af4ff3 storage1 C3L-02951.RNA-Seq.R2.A C3L-02951 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdbb3ee9-6312-4094-913d-ad95d73301b0/180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R2_001.fastq.gz 3719756463 FASTQ NA fdbb3ee9-6312-4094-913d-ad95d73301b0 storage1 @@ -2646,8 +2785,10 @@ C3L-02954.RNA-Seq.R1.A C3L-02954 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3L-02954.RNA-Seq.R1.T C3L-02954 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fe3fe64-6744-4729-b179-5337065a5260/190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R1_001.fastq.gz 4458540622 FASTQ NA 5fe3fe64-6744-4729-b179-5337065a5260 storage1 C3L-02954.RNA-Seq.R2.A C3L-02954 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1038cb1-8e4d-49c6-b41b-bbf57d007d37/190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R2_001.fastq.gz 4082573186 FASTQ NA d1038cb1-8e4d-49c6-b41b-bbf57d007d37 storage1 C3L-02954.RNA-Seq.R2.T C3L-02954 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f37eca52-6cde-4686-8899-4dc0dc52b4c1/190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R2_001.fastq.gz 5116470503 FASTQ NA f37eca52-6cde-4686-8899-4dc0dc52b4c1 storage1 +C3L-02955.RNA-Seq.chimeric.T.hg38 C3L-02955 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2cca5dbf-0be7-4618-911c-f82f6f70d51d/17bad412-a9a3-4b33-b5ee-82f689996b4e.rna_seq.chimeric.gdc_realn.bam 209145502 BAM hg38 2cca5dbf-0be7-4618-911c-f82f6f70d51d storage1 C3L-02955.RNA-Seq.R1.T C3L-02955 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7789396-db2e-4d22-834a-b310021a57ee/181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R1_001.fastq.gz 4173598325 FASTQ NA e7789396-db2e-4d22-834a-b310021a57ee storage1 C3L-02955.RNA-Seq.R2.T C3L-02955 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe6a58b1-0a07-44f2-b4c1-606ea06a5158/181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R2_001.fastq.gz 4407032916 FASTQ NA fe6a58b1-0a07-44f2-b4c1-606ea06a5158 storage1 +C3L-02955.RNA-Seq.transcriptome.T.hg38 C3L-02955 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b46197a4-3c8b-4050-baca-a9a4b297f35d/17bad412-a9a3-4b33-b5ee-82f689996b4e.rna_seq.transcriptome.gdc_realn.bam 11066521717 BAM hg38 b46197a4-3c8b-4050-baca-a9a4b297f35d storage1 C3L-02956.RNA-Seq.R1.A C3L-02956 PDA RNA-Seq tissue_normal 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C3L-02969.RNA-Seq.R1.T C3L-02969 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5db9c66-41b1-485f-a6f3-055e5d3f0d2f/190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R1_001.fastq.gz 4058864935 FASTQ NA c5db9c66-41b1-485f-a6f3-055e5d3f0d2f storage1 C3L-02969.RNA-Seq.R2.A C3L-02969 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73df68fc-ee4c-422c-9536-4a2ef378631d/190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4520283548 FASTQ NA 73df68fc-ee4c-422c-9536-4a2ef378631d storage1 C3L-02969.RNA-Seq.R2.T C3L-02969 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a67dc932-9ad9-4edf-a590-9508b9a3c388/190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R2_001.fastq.gz 4540668482 FASTQ NA a67dc932-9ad9-4edf-a590-9508b9a3c388 storage1 +C3L-02970.RNA-Seq.chimeric.T.hg38 C3L-02970 GBM RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c370f76-baed-452e-af24-0b557400ea8b/190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R1_001.fastq.gz 3070816096 FASTQ NA 3c370f76-baed-452e-af24-0b557400ea8b storage1 C3L-03262.RNA-Seq.R2.A C3L-03262 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db3a60ba-b8b9-4c8b-a49e-234c1640f018/190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4273435058 FASTQ NA db3a60ba-b8b9-4c8b-a49e-234c1640f018 storage1 @@ -2722,8 +2873,10 @@ C3L-03264.RNA-Seq.R1.T C3L-03264 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-03264.RNA-Seq.R1.T C3L-03264 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a886e1ec-e5eb-4ae0-8e6c-80db1f2b2bee/190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R1_001.fastq.gz 3732369076 FASTQ NA a886e1ec-e5eb-4ae0-8e6c-80db1f2b2bee storage1 C3L-03264.RNA-Seq.R2.T C3L-03264 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87e7cbed-df5d-4f19-bccc-ebcaa17a9576/190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R2_001.fastq.gz 4154435970 FASTQ NA 87e7cbed-df5d-4f19-bccc-ebcaa17a9576 storage1 C3L-03264.RNA-Seq.R2.T C3L-03264 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db2853d7-0b49-47dc-85d3-0b33a2ff9f25/20210723_P2_F10_WB7988-plate2_S70_R2_001.fastq.gz 3423913770 FASTQ NA db2853d7-0b49-47dc-85d3-0b33a2ff9f25 storage1 +C3L-03266.RNA-Seq.chimeric.T.hg38 C3L-03266 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afc6268b-418a-4ab5-911d-ca49562573c3/2e0c7789-b8ff-4a1f-a360-a77fb1ef0468.rna_seq.chimeric.gdc_realn.bam 54853532 BAM hg38 afc6268b-418a-4ab5-911d-ca49562573c3 storage1 C3L-03266.RNA-Seq.R1.T C3L-03266 GBM RNA-Seq tumor 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C3L-03348.WXS.T.BIOTEXT_1w1kj4Z.hg38 C3L-03348 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5bd8d9b-8c06-4f9a-a17c-5659a79c6d5f/0a27616d-0796-4609-ad59-2448a75d7749_wxs_gdc_realn.bam 31087045292 BAM hg38 e5bd8d9b-8c06-4f9a-a17c-5659a79c6d5f storage1 C3L-03348.WXS.T.BIOTEXT_2k4lRWM.hg38 C3L-03348 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5a5ff62-5ea9-404c-a530-7e15987c1b52/fc5be7e1-d584-45b2-bfad-1cfd971ca4ec_wxs_gdc_realn.bam 52677237299 BAM hg38 a5a5ff62-5ea9-404c-a530-7e15987c1b52 storage1 C3L-03348.WXS.T.BIOTEXT_Z6OE40Q.hg38 C3L-03348 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b9d6e4e-7609-4a76-bd56-2dba820b91d5/9dcf8cb9-1927-4b2b-a6aa-84971c658db7_wxs_gdc_realn.bam 32971728513 BAM hg38 9b9d6e4e-7609-4a76-bd56-2dba820b91d5 storage1 +C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0dd34017-3bea-4078-bfb6-359d08615f12/0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM hg38 0dd34017-3bea-4078-bfb6-359d08615f12 storage1 C3L-03378.RNA-Seq.R1.A C3L-03378 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77b18098-8d38-4e5e-8131-07fb0109099f/190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 3654791322 FASTQ NA 77b18098-8d38-4e5e-8131-07fb0109099f storage1 @@ -2774,26 +2932,43 @@ C3L-03378.RNA-Seq.R1.T C3L-03378 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3L-03378.RNA-Seq.R2.A C3L-03378 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4dd11db-f583-4498-ba79-381e045765a7/190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 4035185144 FASTQ NA e4dd11db-f583-4498-ba79-381e045765a7 storage1 C3L-03378.RNA-Seq.R2.T C3L-03378 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61f672cd-e63d-4e8d-b501-ea42b0e04989/190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R2_001.fastq.gz 5384513755 FASTQ NA 61f672cd-e63d-4e8d-b501-ea42b0e04989 storage1 C3L-03378.RNA-Seq.R2.T C3L-03378 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1d95347-4092-459b-bfc0-9f8b132fec1e/20210723_P2_H1_WB7988-plate2_S85_R2_001.fastq.gz 7000302972 FASTQ NA c1d95347-4092-459b-bfc0-9f8b132fec1e storage1 +C3L-03385.RNA-Seq.R1.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ NA fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 storage1 +C3L-03385.RNA-Seq.R2.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bad51e82-edda-4dae-9ae2-a378a2c50866/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ NA bad51e82-edda-4dae-9ae2-a378a2c50866 storage1 C3L-03385.WXS.N.hg38 C3L-03385 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5b5aae5-cc1e-4644-87d0-d21324604e2a/f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wxs_gdc_realn.bam 33622502874 BAM hg38 c5b5aae5-cc1e-4644-87d0-d21324604e2a storage1 C3L-03385.WXS.T.hg38 C3L-03385 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/faa8ff85-2285-4533-9a3c-3e04b16f0a2e/d623559b-eaeb-4754-ad9a-9884f01c60a7_wxs_gdc_realn.bam 26146677855 BAM hg38 faa8ff85-2285-4533-9a3c-3e04b16f0a2e storage1 +C3L-03387.RNA-Seq.chimeric.T.hg38 C3L-03387 GBM RNA-Seq tumor 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C3L-03622.WXS.T.BIOTEXT_W68gRox.hg38 C3L-03622 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acc533f2-f879-437d-ad63-4da6676c5558/29544829-4515-4a88-bb93-480bae55d8f6_wxs_gdc_realn.bam 31513261886 BAM hg38 acc533f2-f879-437d-ad63-4da6676c5558 storage1 C3L-03624.WXS.N.hg38 C3L-03624 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbbaffe7-de40-4707-ac67-682934f2c5ca/c96c0aee-5f31-409e-9188-8fcf3653cdc0_wxs_gdc_realn.bam 33898148249 BAM hg38 dbbaffe7-de40-4707-ac67-682934f2c5ca storage1 C3L-03624.WXS.T C3L-03624 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f713792-8585-41da-be6c-91627cea748b/CPT0198600025.WholeExome.RP-1303.bam 47310615021 BAM hg19 8f713792-8585-41da-be6c-91627cea748b storage1 +C3L-03628.RNA-Seq.genomic.T.hg38 C3L-03628 PDA RNA-Seq tumor 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C3L-03629.WXS.T.BIOTEXT_Z6w6k82.hg38 C3L-03629 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0bfb95d-1cd4-454f-846a-343eeece9886/4c5320d3-3d57-4115-8865-3cb140cb3815_wxs_gdc_realn.bam 28904578878 BAM hg38 d0bfb95d-1cd4-454f-846a-343eeece9886 storage1 +C3L-03630.RNA-Seq.genomic.T.hg38 C3L-03630 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d44b24c8-8f15-4616-8d61-7e435e75f760/c9932157-976a-438f-a698-6d10cb5e7d41.rna_seq.genomic.gdc_realn.bam 8588378220 BAM hg38 d44b24c8-8f15-4616-8d61-7e435e75f760 storage1 C3L-03630.RNA-Seq.R1.T C3L-03630 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abf20b14-f42b-4ee3-9a92-47a0bb993abc/190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 4088071151 FASTQ NA abf20b14-f42b-4ee3-9a92-47a0bb993abc storage1 C3L-03630.RNA-Seq.R2.T C3L-03630 PDA RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02a17205-4f12-46b3-8ea5-fa2c1d3c5282/190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4451462225 FASTQ NA 02a17205-4f12-46b3-8ea5-fa2c1d3c5282 storage1 +C3L-03639.RNA-Seq.genomic.T.hg38 C3L-03639 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e07e1a00-cc74-46da-a1b1-8e73a034a0dd/e9d57849-a506-422b-a500-c237d2e13665.rna_seq.genomic.gdc_realn.bam 10096643305 BAM hg38 e07e1a00-cc74-46da-a1b1-8e73a034a0dd storage1 C3L-03639.RNA-Seq.R1.T C3L-03639 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78529b12-483f-4a95-95b1-22a760125a08/190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R1_001.fastq.gz 4127318283 FASTQ NA 78529b12-483f-4a95-95b1-22a760125a08 storage1 C3L-03639.RNA-Seq.R2.T C3L-03639 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71867229-fafe-45c5-bc56-344e7c4c0a79/190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R2_001.fastq.gz 4652080851 FASTQ NA 71867229-fafe-45c5-bc56-344e7c4c0a79 storage1 C3L-03642.RNA-Seq.R1.A C3L-03642 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56ddbe29-682c-4758-8a31-b0ee38465644/190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4642044745 FASTQ NA 56ddbe29-682c-4758-8a31-b0ee38465644 storage1 @@ -2896,8 +3076,10 @@ C3L-03679.RNA-Seq.R1.A C3L-03679 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3L-03679.RNA-Seq.R1.T C3L-03679 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2a66652-aa64-4bfa-9f7b-3aad99ef5534/190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R1_001.fastq.gz 3747373205 FASTQ NA e2a66652-aa64-4bfa-9f7b-3aad99ef5534 storage1 C3L-03679.RNA-Seq.R2.A C3L-03679 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/309593c7-ba2a-4bb7-8152-946cf6211b80/190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R2_001.fastq.gz 4119306888 FASTQ NA 309593c7-ba2a-4bb7-8152-946cf6211b80 storage1 C3L-03679.RNA-Seq.R2.T C3L-03679 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/298c28c1-65c7-435c-9788-5053083e8084/190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R2_001.fastq.gz 4178458008 FASTQ NA 298c28c1-65c7-435c-9788-5053083e8084 storage1 +C3L-03681.RNA-Seq.chimeric.T.hg38 C3L-03681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f063124-cddc-4cc8-bffc-5e59a8513034/b13b944c-cbb8-4400-8e6c-4ebdeac56021.rna_seq.chimeric.gdc_realn.bam 36232999 BAM hg38 3f063124-cddc-4cc8-bffc-5e59a8513034 storage1 C3L-03681.RNA-Seq.R1.T C3L-03681 GBM RNA-Seq tumor 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C3L-03726.RNA-Seq.R1.T C3L-03726 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7416b7eb-d016-4d5f-bb8c-5f6522fab3c6/190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R1_001.fastq.gz 4076005533 FASTQ NA 7416b7eb-d016-4d5f-bb8c-5f6522fab3c6 storage1 C3L-03726.RNA-Seq.R2.A C3L-03726 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b248614-6222-40fe-8be5-c21de1b3ee60/190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R2_001.fastq.gz 4221526815 FASTQ NA 9b248614-6222-40fe-8be5-c21de1b3ee60 storage1 C3L-03726.RNA-Seq.R2.T C3L-03726 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e181e91-e18e-4087-b243-0aa9d9cc1f26/190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R2_001.fastq.gz 4643808466 FASTQ NA 4e181e91-e18e-4087-b243-0aa9d9cc1f26 storage1 +C3L-03727.RNA-Seq.chimeric.T.hg38 C3L-03727 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4afcffd6-a44d-496d-bcb4-c4fbb0a5b72f/0a4a687c-44de-4a5e-b416-ce00741b3bf3.rna_seq.chimeric.gdc_realn.bam 83015726 BAM hg38 4afcffd6-a44d-496d-bcb4-c4fbb0a5b72f storage1 C3L-03727.RNA-Seq.R1.T C3L-03727 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b526132b-252b-4f64-a2ca-38cc2054e315/190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R1_001.fastq.gz 4340578448 FASTQ NA b526132b-252b-4f64-a2ca-38cc2054e315 storage1 C3L-03727.RNA-Seq.R2.T C3L-03727 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f9a8462-d332-440b-829b-cb89534d53ac/190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ NA 7f9a8462-d332-440b-829b-cb89534d53ac storage1 +C3L-03727.RNA-Seq.transcriptome.T.hg38 C3L-03727 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b265a4da-40c2-4cd1-a523-1269a3a72366/0a4a687c-44de-4a5e-b416-ce00741b3bf3.rna_seq.transcriptome.gdc_realn.bam 9622624187 BAM hg38 b265a4da-40c2-4cd1-a523-1269a3a72366 storage1 +C3L-03728.RNA-Seq.chimeric.T.hg38 C3L-03728 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f28d00d-7640-46b0-a5a7-a6c4dd99cdc8/31e6d792-d209-48dd-97c7-4271d8533d12.rna_seq.chimeric.gdc_realn.bam 95702337 BAM hg38 6f28d00d-7640-46b0-a5a7-a6c4dd99cdc8 storage1 C3L-03728.RNA-Seq.R1.T C3L-03728 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4baf937-60b5-42f9-a33e-1209aa16242b/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ NA b4baf937-60b5-42f9-a33e-1209aa16242b storage1 C3L-03728.RNA-Seq.R2.T C3L-03728 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c99ba97-600a-4b1f-8896-eaa03fcb0372/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ NA 1c99ba97-600a-4b1f-8896-eaa03fcb0372 storage1 +C3L-03728.RNA-Seq.transcriptome.T.hg38 C3L-03728 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5bdfa5e-f71f-4eff-af2a-8ada1205e557/31e6d792-d209-48dd-97c7-4271d8533d12.rna_seq.transcriptome.gdc_realn.bam 8683090174 BAM hg38 e5bdfa5e-f71f-4eff-af2a-8ada1205e557 storage1 C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/602fb004-e784-4254-b4af-0f64915cf9fd/d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.genomic.gdc_realn.bam 8079501100 BAM hg38 602fb004-e784-4254-b4af-0f64915cf9fd storage1 C3L-03733.RNA-Seq.R1.T C3L-03733 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c8b80a-f15c-47ad-927e-96483a71a4ac/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ NA d3c8b80a-f15c-47ad-927e-96483a71a4ac storage1 C3L-03733.RNA-Seq.R2.T C3L-03733 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d68a3a3f-d8d9-488f-b581-3eb6bf3c545f/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ NA d68a3a3f-d8d9-488f-b581-3eb6bf3c545f storage1 @@ -2921,20 +3107,30 @@ C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-03733.WGS.T.hg38 C3L-03733 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3670c996-27b9-48ba-ba81-9f8129b1d722/bfb2401e-4a92-4242-92bb-d01ecb08d14d_wgs_gdc_realn.bam 61788693098 BAM hg38 3670c996-27b9-48ba-ba81-9f8129b1d722 storage1 C3L-03733.WXS.N.hg38 C3L-03733 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25d1bdb6-0d99-4a7d-92b6-85eef9854759/b5c33706-5e86-42f3-9fd2-ab09c7614d05_wxs_gdc_realn.bam 35376963378 BAM hg38 25d1bdb6-0d99-4a7d-92b6-85eef9854759 storage1 C3L-03733.WXS.T.hg38 C3L-03733 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33ac154f-1767-4f9b-8075-a12172189894/bfb2401e-4a92-4242-92bb-d01ecb08d14d_wxs_gdc_realn.bam 36743064043 BAM hg38 33ac154f-1767-4f9b-8075-a12172189894 storage1 +C3L-03735.RNA-Seq.R1.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ NA fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 storage1 +C3L-03735.RNA-Seq.R2.T C3L-03735 GBM RNA-Seq tumor 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C3L-03965 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60d87417-4be8-454b-947d-650fe39b2ef0/190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 4554290894 FASTQ NA 60d87417-4be8-454b-947d-650fe39b2ef0 storage1 C3L-03965.RNA-Seq.R2.T C3L-03965 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5998c3a-c80b-4fad-b796-6edc3f14ca16/190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R2_001.fastq.gz 5153429353 FASTQ NA b5998c3a-c80b-4fad-b796-6edc3f14ca16 storage1 +C3L-03968.RNA-Seq.chimeric.T.hg38 C3L-03968 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cdb13d84-1554-43e1-95bd-ba341cefac68/b9da1e14-7929-46ba-8e1d-c25682ba7df5.rna_seq.chimeric.gdc_realn.bam 88996732 BAM hg38 cdb13d84-1554-43e1-95bd-ba341cefac68 storage1 C3L-03968.RNA-Seq.R1.T C3L-03968 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6017d4a-a185-48b3-be09-6924aebbd163/190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R1_001.fastq.gz 4636196096 FASTQ NA b6017d4a-a185-48b3-be09-6924aebbd163 storage1 C3L-03968.RNA-Seq.R2.T C3L-03968 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/caa46304-d90c-4d2f-b172-b917ea44d003/190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R2_001.fastq.gz 4944644409 FASTQ NA caa46304-d90c-4d2f-b172-b917ea44d003 storage1 +C3L-03968.RNA-Seq.transcriptome.T.hg38 C3L-03968 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2965b6ed-aa86-4091-85c4-5f4451d15b3e/b9da1e14-7929-46ba-8e1d-c25682ba7df5.rna_seq.transcriptome.gdc_realn.bam 8363388866 BAM hg38 2965b6ed-aa86-4091-85c4-5f4451d15b3e storage1 C3L-03969.RNA-Seq.R1.A C3L-03969 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a354b39-5529-48f4-96a9-4d98d5bd3158/190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R1_001.fastq.gz 3773757903 FASTQ NA 8a354b39-5529-48f4-96a9-4d98d5bd3158 storage1 C3L-03969.RNA-Seq.R1.T C3L-03969 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43507f31-8ecf-4b74-b825-91d2d500e1c8/190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R1_001.fastq.gz 3781375419 FASTQ NA 43507f31-8ecf-4b74-b825-91d2d500e1c8 storage1 C3L-03969.RNA-Seq.R2.A C3L-03969 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0592d378-f99e-40d6-814e-0d8a72167e96/190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R2_001.fastq.gz 4112110859 FASTQ NA 0592d378-f99e-40d6-814e-0d8a72167e96 storage1 @@ -2996,6 +3194,8 @@ C3L-04025.RNA-Seq.R1.A C3L-04025 HNSCC RNA-Seq tissue_normal /storage1/fs1/dingl C3L-04025.RNA-Seq.R1.T C3L-04025 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25c1e73d-131b-4d57-a892-e70b305f8760/190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R1_001.fastq.gz 3772549655 FASTQ NA 25c1e73d-131b-4d57-a892-e70b305f8760 storage1 C3L-04025.RNA-Seq.R2.A C3L-04025 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/881ceb87-9b07-4451-92b9-ff28e43c68b9/190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 4402378041 FASTQ NA 881ceb87-9b07-4451-92b9-ff28e43c68b9 storage1 C3L-04025.RNA-Seq.R2.T C3L-04025 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d48de247-9938-4802-9862-e1d81c261a25/190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R2_001.fastq.gz 4192494749 FASTQ NA d48de247-9938-4802-9862-e1d81c261a25 storage1 +C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a729717a-d57e-434d-a30b-abb1e9732b13/44a768a7-1cab-4b18-9307-9d1c136e234b.rna_seq.genomic.gdc_realn.bam 8410259578 BAM hg38 a729717a-d57e-434d-a30b-abb1e9732b13 storage1 +C3L-04027.RNA-Seq.genomic.T.hg38 C3L-04027 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60cd403c-52ad-4267-8c61-c9da8e34a778/c069450d-3add-4eec-a92e-4241409d1a50.rna_seq.genomic.gdc_realn.bam 8799430899 BAM hg38 60cd403c-52ad-4267-8c61-c9da8e34a778 storage1 C3L-04027.RNA-Seq.R1.A C3L-04027 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33ca49b1-e9ed-4c95-9aeb-bc7aa415b6ef/190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R1_001.fastq.gz 4026607218 FASTQ NA 33ca49b1-e9ed-4c95-9aeb-bc7aa415b6ef storage1 C3L-04027.RNA-Seq.R1.T C3L-04027 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/159e4176-9a7c-44ed-b584-27f8aa02d5ec/190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R1_001.fastq.gz 4004986865 FASTQ NA 159e4176-9a7c-44ed-b584-27f8aa02d5ec storage1 C3L-04027.RNA-Seq.R2.A C3L-04027 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e779fe94-29bb-40df-bb13-76a013fd2c53/190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R2_001.fastq.gz 4271815397 FASTQ NA e779fe94-29bb-40df-bb13-76a013fd2c53 storage1 @@ -3008,12 +3208,16 @@ C3L-04033.RNA-Seq.R1.A C3L-04033 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04033.RNA-Seq.R1.T C3L-04033 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20b3406b-826a-46d1-a8e6-55e7c9431014/190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R1_001.fastq.gz 4616701026 FASTQ NA 20b3406b-826a-46d1-a8e6-55e7c9431014 storage1 C3L-04033.RNA-Seq.R2.A C3L-04033 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8886846-49e3-430a-bcd5-7f40e1cc1523/190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R2_001.fastq.gz 3981553315 FASTQ NA e8886846-49e3-430a-bcd5-7f40e1cc1523 storage1 C3L-04033.RNA-Seq.R2.T C3L-04033 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a865155a-4759-416f-a3d1-366b0397caf2/190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R2_001.fastq.gz 5366115132 FASTQ NA a865155a-4759-416f-a3d1-366b0397caf2 storage1 +C3L-04036.RNA-Seq.R1.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ad5e390-ef2e-4370-a0fa-de8d0c112f8b/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ NA 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b storage1 +C3L-04036.RNA-Seq.R2.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/180a4380-addf-4a1a-98bd-e75a7b5982da/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ NA 180a4380-addf-4a1a-98bd-e75a7b5982da storage1 C3L-04036.WXS.N.hg38 C3L-04036 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af95917f-66d4-4f45-a029-744682ad5cfd/d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wxs_gdc_realn.bam 32993694360 BAM hg38 af95917f-66d4-4f45-a029-744682ad5cfd storage1 C3L-04036.WXS.T.hg38 C3L-04036 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/494a854e-4132-41ed-a5a9-4ccdeda2fb59/cf7c8668-776a-401c-8507-aeb41e890b44_wxs_gdc_realn.bam 31650565850 BAM hg38 494a854e-4132-41ed-a5a9-4ccdeda2fb59 storage1 C3L-04037.RNA-Seq.R1.A C3L-04037 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4b5d44d-2940-459d-9c29-ed2e26f03a5f/190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R1_001.fastq.gz 3456382054 FASTQ NA f4b5d44d-2940-459d-9c29-ed2e26f03a5f storage1 C3L-04037.RNA-Seq.R1.T C3L-04037 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20ce4060-9f88-4c4a-8cd6-1686f5924208/190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R1_001.fastq.gz 4443614863 FASTQ NA 20ce4060-9f88-4c4a-8cd6-1686f5924208 storage1 C3L-04037.RNA-Seq.R2.A C3L-04037 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16095216-8046-4e3f-a7de-1846f17d9a36/190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R2_001.fastq.gz 3796085160 FASTQ NA 16095216-8046-4e3f-a7de-1846f17d9a36 storage1 C3L-04037.RNA-Seq.R2.T C3L-04037 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1cdf4feb-6bae-499f-bc7c-c40ceb20f771/190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R2_001.fastq.gz 4973554677 FASTQ NA 1cdf4feb-6bae-499f-bc7c-c40ceb20f771 storage1 +C3L-04038.RNA-Seq.R1.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b1047c2-0ebd-425a-bbb5-558034d20ee0/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ NA 4b1047c2-0ebd-425a-bbb5-558034d20ee0 storage1 +C3L-04038.RNA-Seq.R2.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/432fbf58-dc9c-45c4-aad4-ccb291b8c512/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ NA 432fbf58-dc9c-45c4-aad4-ccb291b8c512 storage1 C3L-04038.WXS.N.hg38 C3L-04038 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d68ef551-045b-4c28-991c-54176b2ef8b2/e5fa0684-79a6-4278-a7cf-29880b9ce537_wxs_gdc_realn.bam 36239960295 BAM hg38 d68ef551-045b-4c28-991c-54176b2ef8b2 storage1 C3L-04038.WXS.T.hg38 C3L-04038 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/593cbb4d-9753-427f-9bca-da27067a715b/17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wxs_gdc_realn.bam 29805069310 BAM hg38 593cbb4d-9753-427f-9bca-da27067a715b storage1 C3L-04040.RNA-Seq.R1.T C3L-04040 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff/190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R1_001.fastq.gz 4182858994 FASTQ NA 03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff storage1 @@ -3022,6 +3226,8 @@ C3L-04071.RNA-Seq.R1.A C3L-04071 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04071.RNA-Seq.R1.T C3L-04071 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a558614c-7e6d-4b94-9755-9e0fa0b9901a/190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R1_001.fastq.gz 6951487565 FASTQ NA a558614c-7e6d-4b94-9755-9e0fa0b9901a storage1 C3L-04071.RNA-Seq.R2.A C3L-04071 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7476ad07-0f47-4459-921a-3f37129a47a3/190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3614110640 FASTQ NA 7476ad07-0f47-4459-921a-3f37129a47a3 storage1 C3L-04071.RNA-Seq.R2.T C3L-04071 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7cd0e96-3009-444e-b5ff-e339fdca5aa7/190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R2_001.fastq.gz 7527528669 FASTQ NA b7cd0e96-3009-444e-b5ff-e339fdca5aa7 storage1 +C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b19262e9-e49a-41bb-b23b-ecdcb74293a0/94fdc446-7e55-4021-9204-139677fecadb.rna_seq.genomic.gdc_realn.bam 10047178019 BAM hg38 b19262e9-e49a-41bb-b23b-ecdcb74293a0 storage1 +C3L-04072.RNA-Seq.genomic.T.hg38 C3L-04072 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/703bed27-f995-4a9e-bcf5-39213337b456/87944582-d98e-4afd-a00f-4fd6ff8d5940.rna_seq.genomic.gdc_realn.bam 8484341677 BAM hg38 703bed27-f995-4a9e-bcf5-39213337b456 storage1 C3L-04072.RNA-Seq.R1.A C3L-04072 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6384d98c-0431-454c-bfbe-02a0eeb169f7/190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R1_001.fastq.gz 4567399648 FASTQ NA 6384d98c-0431-454c-bfbe-02a0eeb169f7 storage1 C3L-04072.RNA-Seq.R1.T C3L-04072 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e143830-c835-4410-86c9-3519bc46ee9f/190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R1_001.fastq.gz 3281861542 FASTQ NA 3e143830-c835-4410-86c9-3519bc46ee9f storage1 C3L-04072.RNA-Seq.R2.A C3L-04072 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f81c80b-93d0-4e4a-96e6-137b1e2dd16b/190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R2_001.fastq.gz 5302939594 FASTQ NA 4f81c80b-93d0-4e4a-96e6-137b1e2dd16b storage1 @@ -3032,6 +3238,8 @@ C3L-04079.RNA-Seq.R2.A C3L-04079 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04079.RNA-Seq.R2.T C3L-04079 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10844c0d-45f2-4b34-a035-a4f108e93efc/200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R2_001.fastq.gz 3997440822 FASTQ NA 10844c0d-45f2-4b34-a035-a4f108e93efc storage1 C3L-04079.WGS.N.hg38 C3L-04079 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a3d4196-15a5-48bd-bf17-52f093143682/9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wgs_gdc_realn.bam 70378739186 BAM hg38 6a3d4196-15a5-48bd-bf17-52f093143682 storage1 C3L-04079.WGS.T.hg38 C3L-04079 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40e8d818-d2c1-4bf9-a55b-0835e0ed02db/1acb4845-2e95-438b-95ad-2598b8dce7e7_wgs_gdc_realn.bam 71588721822 BAM hg38 40e8d818-d2c1-4bf9-a55b-0835e0ed02db storage1 +C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd453332-8552-45b6-aafa-d47cba09494a/442963e3-458a-42ee-9d73-0123cfe2d024.rna_seq.genomic.gdc_realn.bam 8702571591 BAM hg38 bd453332-8552-45b6-aafa-d47cba09494a storage1 +C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dd7c9c7-d4a6-411f-990a-151757a7e63e/b7db871b-6973-4d62-a905-91c2d7dd330d.rna_seq.genomic.gdc_realn.bam 8854255208 BAM hg38 1dd7c9c7-d4a6-411f-990a-151757a7e63e storage1 C3L-04080.RNA-Seq.R1.A C3L-04080 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0bafbbc4-a8fd-4a3b-b252-3adac644fe60/190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R1_001.fastq.gz 4096443371 FASTQ NA 0bafbbc4-a8fd-4a3b-b252-3adac644fe60 storage1 C3L-04080.RNA-Seq.R1.T C3L-04080 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87c9b79e-abdb-40ab-b747-52765ddf30d7/190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4051178418 FASTQ NA 87c9b79e-abdb-40ab-b747-52765ddf30d7 storage1 C3L-04080.RNA-Seq.R2.A C3L-04080 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8567f306-f3e7-441d-aca0-38432ccfeb16/190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R2_001.fastq.gz 4600184115 FASTQ NA 8567f306-f3e7-441d-aca0-38432ccfeb16 storage1 @@ -3053,10 +3261,14 @@ C3L-04082.RNA-Seq.R1.T C3L-04082 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04082.RNA-Seq.R2.T C3L-04082 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f246b0c-555f-40f6-8164-cb5299028ec0/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ NA 5f246b0c-555f-40f6-8164-cb5299028ec0 storage1 C3L-04082.WXS.N.hg38 C3L-04082 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d9f84bd-a6e9-4678-99b9-b92e116bd990/bb8cccdb-ed81-4577-985c-bb7a2fa25615_wxs_gdc_realn.bam 33980020985 BAM hg38 5d9f84bd-a6e9-4678-99b9-b92e116bd990 storage1 C3L-04082.WXS.T.hg38 C3L-04082 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f87237fb-ad70-43ed-af55-79837baed1a4/55106539-3a36-4192-9e5c-0e548beee398_wxs_gdc_realn.bam 26661775311 BAM hg38 f87237fb-ad70-43ed-af55-79837baed1a4 storage1 +C3L-04083.RNA-Seq.R1.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5549791b-5875-433f-a85e-980a44bb3310/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ NA 5549791b-5875-433f-a85e-980a44bb3310 storage1 +C3L-04083.RNA-Seq.R2.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21ee205d-ff01-4791-82f7-e4b0f801a099/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ NA 21ee205d-ff01-4791-82f7-e4b0f801a099 storage1 C3L-04083.WXS.N.hg38 C3L-04083 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc4f43a8-3da1-4df6-94d3-48d461e679a2/d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wxs_gdc_realn.bam 29729626446 BAM hg38 cc4f43a8-3da1-4df6-94d3-48d461e679a2 storage1 C3L-04083.WXS.T.hg38 C3L-04083 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502835bd-e7db-4616-8f28-dca0053b4397/c66bf4aa-16ce-43f4-a353-8244577bf31a_wxs_gdc_realn.bam 28832541743 BAM hg38 502835bd-e7db-4616-8f28-dca0053b4397 storage1 +C3L-04084.RNA-Seq.chimeric.T.hg38 C3L-04084 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7376c08c-6e29-4f9e-b0d7-3aa83fa02cea/4a44e047-294c-41ac-8fbe-68fef0c3144a.rna_seq.chimeric.gdc_realn.bam 121675997 BAM hg38 7376c08c-6e29-4f9e-b0d7-3aa83fa02cea storage1 C3L-04084.RNA-Seq.R1.T C3L-04084 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c130ea-b93b-4fa3-9d65-ec453849df62/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ NA b2c130ea-b93b-4fa3-9d65-ec453849df62 storage1 C3L-04084.RNA-Seq.R2.T C3L-04084 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5862426d-2acc-420a-92be-9a0bbfca35d4/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ NA 5862426d-2acc-420a-92be-9a0bbfca35d4 storage1 +C3L-04084.RNA-Seq.transcriptome.T.hg38 C3L-04084 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b716fc6-942b-4460-9222-d3a7bce01d8c/4a44e047-294c-41ac-8fbe-68fef0c3144a.rna_seq.transcriptome.gdc_realn.bam 9104583220 BAM hg38 2b716fc6-942b-4460-9222-d3a7bce01d8c storage1 C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0374b38f-c17b-4b24-87cf-386ea14434da/8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.genomic.gdc_realn.bam 9281811898 BAM hg38 0374b38f-c17b-4b24-87cf-386ea14434da storage1 C3L-04085.RNA-Seq.R1.T C3L-04085 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25f5bea4-fef4-4378-9ccb-8a5befebf88a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ NA 25f5bea4-fef4-4378-9ccb-8a5befebf88a storage1 C3L-04085.RNA-Seq.R2.T C3L-04085 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0486b67-d5ff-4ae5-97ff-218d95b1e496/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ NA f0486b67-d5ff-4ae5-97ff-218d95b1e496 storage1 @@ -3074,6 +3286,8 @@ C3L-04198.RNA-Seq.R1.T C3L-04198 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3L-04198.RNA-Seq.R2.T C3L-04198 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d9fedabc-4000-44ca-a128-9c788b5c6184/20210723_P2_H3_WB7988-plate2_S87_R2_001.fastq.gz 4170004731 FASTQ NA d9fedabc-4000-44ca-a128-9c788b5c6184 storage1 C3L-04199.RNA-Seq.R1.T C3L-04199 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/412d9433-a40f-425b-a16b-ecd6ae4dccff/20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ NA 412d9433-a40f-425b-a16b-ecd6ae4dccff storage1 C3L-04199.RNA-Seq.R2.T C3L-04199 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77f0aee6-1661-4c2d-958f-16e073935dd2/20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ NA 77f0aee6-1661-4c2d-958f-16e073935dd2 storage1 +C3L-04213.RNA-Seq.R1.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a18317d-3520-42dc-8003-f9561853b8dc/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ NA 3a18317d-3520-42dc-8003-f9561853b8dc storage1 +C3L-04213.RNA-Seq.R2.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb64ce39-84ad-40df-801d-f1e1146356a0/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ NA fb64ce39-84ad-40df-801d-f1e1146356a0 storage1 C3L-04213.WXS.N.hg38 C3L-04213 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc11d4a-5a91-438c-9143-57a046ea5a10/1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wxs_gdc_realn.bam 30102627292 BAM hg38 3cc11d4a-5a91-438c-9143-57a046ea5a10 storage1 C3L-04213.WXS.T.hg38 C3L-04213 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c9986e7-ede7-4495-974b-2095f534a7f6/c7af6007-1e13-438f-a4fe-d011d96669e3_wxs_gdc_realn.bam 26312189759 BAM hg38 7c9986e7-ede7-4495-974b-2095f534a7f6 storage1 C3L-04216.RNA-Seq.R1.T C3L-04216 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b801f00-6d57-4304-b6f0-b622e817a416/200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R1_001.fastq.gz 3391145613 FASTQ NA 2b801f00-6d57-4304-b6f0-b622e817a416 storage1 @@ -3162,12 +3376,16 @@ C3L-04336.RNA-Seq.R2.A C3L-04336 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04336.RNA-Seq.R2.T C3L-04336 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9ca1e0c-0d79-4d8a-bc85-fc1efec794d2/200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R2_001.fastq.gz 5212057900 FASTQ NA a9ca1e0c-0d79-4d8a-bc85-fc1efec794d2 storage1 C3L-04336.WGS.N.hg38 C3L-04336 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa673546-1c0d-4508-9ab6-dad3e4b748ae/4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 84241551453 BAM hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae storage1 C3L-04336.WGS.T.hg38 C3L-04336 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43875a6f-1286-408a-b54d-150b608901ac/fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wgs_gdc_realn.bam 69650090525 BAM hg38 43875a6f-1286-408a-b54d-150b608901ac storage1 +C3L-04339.RNA-Seq.R1.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6a9244a-4ab2-4f78-be63-b74401e4b903/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ NA c6a9244a-4ab2-4f78-be63-b74401e4b903 storage1 +C3L-04339.RNA-Seq.R2.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ad6b56f-857b-4e87-ba96-77141a60b898/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ NA 1ad6b56f-857b-4e87-ba96-77141a60b898 storage1 C3L-04339.WXS.N.hg38 C3L-04339 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/210f66ea-881d-49ae-b32c-3d39ddac7941/33f46088-32c6-48b4-8a6b-2290453f2095_wxs_gdc_realn.bam 28408035993 BAM hg38 210f66ea-881d-49ae-b32c-3d39ddac7941 storage1 C3L-04339.WXS.T.hg38 C3L-04339 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d105a1df-c44b-46eb-aba8-6bd7b2a87af5/ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wxs_gdc_realn.bam 32992537997 BAM hg38 d105a1df-c44b-46eb-aba8-6bd7b2a87af5 storage1 C3L-04354.RNA-Seq.R1.A C3L-04354 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e239027f-e025-487d-abcc-ff9de8e34f80/190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R1_001.fastq.gz 3584955086 FASTQ NA e239027f-e025-487d-abcc-ff9de8e34f80 storage1 C3L-04354.RNA-Seq.R1.T C3L-04354 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/509c74b9-0387-4e6e-9a34-df82a0e21c15/190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ NA 509c74b9-0387-4e6e-9a34-df82a0e21c15 storage1 C3L-04354.RNA-Seq.R2.A C3L-04354 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3268285d-843c-4702-ae5a-80b8964dda0c/190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R2_001.fastq.gz 4145360974 FASTQ NA 3268285d-843c-4702-ae5a-80b8964dda0c storage1 C3L-04354.RNA-Seq.R2.T C3L-04354 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d2bdec4-4dc8-4305-bca9-d20ad509cfbb/190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4794346110 FASTQ NA 2d2bdec4-4dc8-4305-bca9-d20ad509cfbb storage1 +C3L-04359.RNA-Seq.R1.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b42d0852-cae1-4758-a678-bc012f13aea9/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ NA b42d0852-cae1-4758-a678-bc012f13aea9 storage1 +C3L-04359.RNA-Seq.R2.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88640d20-f2e8-42d8-a9aa-eb03821c31f7/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ NA 88640d20-f2e8-42d8-a9aa-eb03821c31f7 storage1 C3L-04359.WXS.N.hg38 C3L-04359 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a9ab409-f15c-49f9-b566-0c21bbedb03d/d7706205-c0e2-4a84-a0d3-5496598cbf10_wxs_gdc_realn.bam 43853685171 BAM hg38 0a9ab409-f15c-49f9-b566-0c21bbedb03d storage1 C3L-04359.WXS.T.hg38 C3L-04359 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5308095c-11ed-4bf5-a175-0a632a0a250a/7dbf52e5-6cf7-44bf-b211-2941a5917899_wxs_gdc_realn.bam 40884138168 BAM hg38 5308095c-11ed-4bf5-a175-0a632a0a250a storage1 C3L-04361.RNA-Seq.R1.A C3L-04361 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36a67212-56b0-4ecc-a9e5-3f1399f8df22/200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R1_001.fastq.gz 3528552695 FASTQ NA 36a67212-56b0-4ecc-a9e5-3f1399f8df22 storage1 @@ -3176,6 +3394,8 @@ C3L-04361.RNA-Seq.R2.A C3L-04361 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04361.RNA-Seq.R2.T C3L-04361 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0dc815c3-389f-411d-920f-9290badb83e2/200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R2_001.fastq.gz 3902034327 FASTQ NA 0dc815c3-389f-411d-920f-9290badb83e2 storage1 C3L-04361.WGS.N.hg38 C3L-04361 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62d41a03-8349-40fa-bd86-f48e41d8d9b2/84411001-c027-4951-b815-ff6ed4482914_wgs_gdc_realn.bam 100080652674 BAM hg38 62d41a03-8349-40fa-bd86-f48e41d8d9b2 storage1 C3L-04361.WGS.T.hg38 C3L-04361 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f462f6a-1d87-4669-bd8d-c4a32b90af14/6eb8c4ee-7977-49ea-9e1f-dc640032b670_wgs_gdc_realn.bam 88686010736 BAM hg38 8f462f6a-1d87-4669-bd8d-c4a32b90af14 storage1 +C3L-04362.RNA-Seq.R1.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ NA 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c storage1 +C3L-04362.RNA-Seq.R2.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/710ec59e-1735-4dd5-ba70-ce35329cac5c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ NA 710ec59e-1735-4dd5-ba70-ce35329cac5c storage1 C3L-04362.WXS.N.hg38 C3L-04362 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39a56545-fb06-4f46-bec5-44025a89bc72/6b29a573-c2f6-4614-9f25-14c918babfa8_wxs_gdc_realn.bam 47074453455 BAM hg38 39a56545-fb06-4f46-bec5-44025a89bc72 storage1 C3L-04362.WXS.T.hg38 C3L-04362 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9777e76d-b1b6-4f1d-b8d7-592e2e538b4b/54bcff95-090d-41c1-92c6-66140f4b3ab9_wxs_gdc_realn.bam 32536843115 BAM hg38 9777e76d-b1b6-4f1d-b8d7-592e2e538b4b storage1 C3L-04365.RNA-Seq.R1.A C3L-04365 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc53dff1-6948-4f36-9950-acd8af23606b/190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 5996872719 FASTQ NA bc53dff1-6948-4f36-9950-acd8af23606b storage1 @@ -3237,12 +3457,16 @@ C3L-04410.RNA-Seq.R2.A C3L-04410 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04410.RNA-Seq.R2.T C3L-04410 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1563fb9-5b45-412d-aa9d-f8bdae672abe/200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R2_001.fastq.gz 4322814786 FASTQ NA b1563fb9-5b45-412d-aa9d-f8bdae672abe storage1 C3L-04410.WGS.N.hg38 C3L-04410 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51138aec-609f-4285-95d2-8d47f3b7b906/ddaede42-d686-4b86-8706-ec0d5aa1165d_wgs_gdc_realn.bam 74503866000 BAM hg38 51138aec-609f-4285-95d2-8d47f3b7b906 storage1 C3L-04410.WGS.T.hg38 C3L-04410 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48f97379-47bf-487c-b22a-4881b9570c1d/32552864-05a8-479f-a894-db75882384c1_wgs_gdc_realn.bam 68395924949 BAM hg38 48f97379-47bf-487c-b22a-4881b9570c1d storage1 +C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2d69a8c-7132-4daf-8895-7ceaaaafdbb9/fd2439d2-945b-4f58-911f-839ecc4ae8fb.rna_seq.genomic.gdc_realn.bam 7728076176 BAM hg38 d2d69a8c-7132-4daf-8895-7ceaaaafdbb9 storage1 C3L-04473.RNA-Seq.R1.T C3L-04473 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f4306d1-39ce-420f-82b3-c7032d285625/190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R1_001.fastq.gz 3636785373 FASTQ NA 9f4306d1-39ce-420f-82b3-c7032d285625 storage1 C3L-04473.RNA-Seq.R2.T C3L-04473 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4cc8660-e78b-4c32-ac99-6cc2baa67b6d/190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R2_001.fastq.gz 3934885118 FASTQ NA a4cc8660-e78b-4c32-ac99-6cc2baa67b6d storage1 +C3L-04475.RNA-Seq.genomic.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f4c1fdd-794d-4a45-a3bf-732a541aeb4d/f7f67ce1-3de9-41b6-991b-04ef5fc48a86.rna_seq.genomic.gdc_realn.bam 8392367227 BAM hg38 1f4c1fdd-794d-4a45-a3bf-732a541aeb4d storage1 +C3L-04475.RNA-Seq.genomic.T.hg38 C3L-04475 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3719da0-010c-433b-b0b2-17d023aff099/355b949b-302e-431b-86b8-cae32df1c072.rna_seq.genomic.gdc_realn.bam 7745446698 BAM hg38 d3719da0-010c-433b-b0b2-17d023aff099 storage1 C3L-04475.RNA-Seq.R1.A C3L-04475 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8a064eb-7b13-4787-a851-54149dc5efc1/190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R1_001.fastq.gz 3778418614 FASTQ NA a8a064eb-7b13-4787-a851-54149dc5efc1 storage1 C3L-04475.RNA-Seq.R1.T C3L-04475 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30d19a9a-ea38-4aef-bb05-c5b0f3a039ac/190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R1_001.fastq.gz 3522404258 FASTQ NA 30d19a9a-ea38-4aef-bb05-c5b0f3a039ac storage1 C3L-04475.RNA-Seq.R2.A C3L-04475 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33d050c4-19aa-41c1-b3bf-4621fb774485/190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R2_001.fastq.gz 4408642109 FASTQ NA 33d050c4-19aa-41c1-b3bf-4621fb774485 storage1 C3L-04475.RNA-Seq.R2.T C3L-04475 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2efd595-9842-4520-b7af-c47a68b62967/190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R2_001.fastq.gz 3938909364 FASTQ NA a2efd595-9842-4520-b7af-c47a68b62967 storage1 +C3L-04479.RNA-Seq.genomic.T.hg38 C3L-04479 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cc684f1-8730-449e-a775-fea85c86d852/f8bac4e8-c01f-4db4-bab2-e69bac7873b3.rna_seq.genomic.gdc_realn.bam 7687950942 BAM hg38 5cc684f1-8730-449e-a775-fea85c86d852 storage1 C3L-04479.RNA-Seq.R1.T C3L-04479 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a0446f6-2bd9-4e7a-b205-4489e718fd1f/190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R1_001.fastq.gz 3539480313 FASTQ NA 0a0446f6-2bd9-4e7a-b205-4489e718fd1f storage1 C3L-04479.RNA-Seq.R2.T C3L-04479 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea7cae74-cb6b-4d52-a75f-82d1935e4ed3/190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R2_001.fastq.gz 3922836348 FASTQ NA ea7cae74-cb6b-4d52-a75f-82d1935e4ed3 storage1 C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3317857-16cd-4496-8cc1-afe0b14be4cf/6de84e7e-9f5d-4d2d-a404-753e1efe3dca.rna_seq.genomic.gdc_realn.bam 7749523873 BAM hg38 e3317857-16cd-4496-8cc1-afe0b14be4cf storage1 @@ -3266,6 +3490,7 @@ C3L-04489.WGS.Nbc.hg38 C3L-04489 AML WGS buccal_normal /storage1/fs1/m.wyczalkow C3L-04489.WGS.Tpb.hg38 C3L-04489 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3d3e92c-ed2b-4a4b-8291-040d062ae556/3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wgs_gdc_realn.bam 180784278937 BAM hg38 a3d3e92c-ed2b-4a4b-8291-040d062ae556 storage1 C3L-04489.WXS.Nbc.hg38 C3L-04489 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59561b27-a5e3-420d-9f98-63d191c4e74c/c40e8654-b3db-46cb-a941-a2ca9f597275_wxs_gdc_realn.bam 98070189416 BAM hg38 59561b27-a5e3-420d-9f98-63d191c4e74c storage1 C3L-04489.WXS.Tpb.hg38 C3L-04489 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ac42abf-43ea-46f0-a2e0-1b4c2b810106/3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wxs_gdc_realn.bam 39139211183 BAM hg38 0ac42abf-43ea-46f0-a2e0-1b4c2b810106 storage1 +C3L-04495.RNA-Seq.genomic.T.hg38 C3L-04495 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0004f9f1-8b1b-4a8d-9814-f43d50895d94/0e947ea6-f7ec-4bb9-a383-d8324cb2db75.rna_seq.genomic.gdc_realn.bam 8341216052 BAM hg38 0004f9f1-8b1b-4a8d-9814-f43d50895d94 storage1 C3L-04495.RNA-Seq.R1.T C3L-04495 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/165bff0a-b883-4098-b18f-ff82d102e506/190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R1_001.fastq.gz 3310477843 FASTQ NA 165bff0a-b883-4098-b18f-ff82d102e506 storage1 C3L-04495.RNA-Seq.R2.T C3L-04495 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d7103c9-28f9-4015-8faa-16fc46808618/190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R2_001.fastq.gz 3637048729 FASTQ NA 5d7103c9-28f9-4015-8faa-16fc46808618 storage1 C3L-04496.RNA-Seq.R1.T C3L-04496 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad7050e7-829c-4255-adf9-fcc5bb6a0786/20210723_P2_F4_WB7988-plate2_S64_R1_001.fastq.gz 5632256532 FASTQ NA ad7050e7-829c-4255-adf9-fcc5bb6a0786 storage1 @@ -3283,14 +3508,20 @@ C3L-04508.RNA-Seq.R2.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow /storage1/fs1/d C3L-04508.WGS.Tbm.hg38 C3L-04508 AML WGS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc0aee4c-9d1f-42de-9753-a19867f49f6c/fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wgs_gdc_realn.bam 90844622922 BAM hg38 cc0aee4c-9d1f-42de-9753-a19867f49f6c storage1 C3L-04508.WXS.Nbc.hg38 C3L-04508 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/810d5168-1549-4f11-b0ed-c9dce053aae2/abfc8193-39ad-46cb-a862-43400dcfb1e9_wxs_gdc_realn.bam 28008255853 BAM hg38 810d5168-1549-4f11-b0ed-c9dce053aae2 storage1 C3L-04508.WXS.Tbm.hg38 C3L-04508 AML WXS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92e1a7b5-1222-4ece-b133-dbe4ea5695ef/fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wxs_gdc_realn.bam 34209542719 BAM hg38 92e1a7b5-1222-4ece-b133-dbe4ea5695ef storage1 +C3L-04537.RNA-Seq.R1.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adf59d70-7072-4025-8eba-01d2dcd6e667/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ NA adf59d70-7072-4025-8eba-01d2dcd6e667 storage1 +C3L-04537.RNA-Seq.R2.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd035eaf-a77f-4b9b-af7d-f4c0af78fac7/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ NA cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 storage1 C3L-04537.WXS.N.hg38 C3L-04537 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84320c1f-226b-431c-8240-fe28ad4a4894/b2eb19a2-f110-438f-b16c-26dc0f691c14_wxs_gdc_realn.bam 25476423801 BAM hg38 84320c1f-226b-431c-8240-fe28ad4a4894 storage1 C3L-04537.WXS.T.hg38 C3L-04537 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2ea7a2e-737f-4704-8731-492f2cd1c8e9/20533eda-81e3-40c8-842b-40b3e338127c_wxs_gdc_realn.bam 24973995963 BAM hg38 d2ea7a2e-737f-4704-8731-492f2cd1c8e9 storage1 +C3L-04539.RNA-Seq.R1.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b56e66a-4850-46ec-b519-5379c91aa066/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ NA 9b56e66a-4850-46ec-b519-5379c91aa066 storage1 +C3L-04539.RNA-Seq.R2.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a856d4a-bb70-45dc-af41-53ec656ffc10/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ NA 5a856d4a-bb70-45dc-af41-53ec656ffc10 storage1 C3L-04539.WXS.N.hg38 C3L-04539 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b6bf6d8-1ba8-40f2-b72c-7209488eb46d/56cd7cd6-c6e0-4a44-90df-b10abcd38233_wxs_gdc_realn.bam 32221310803 BAM hg38 5b6bf6d8-1ba8-40f2-b72c-7209488eb46d storage1 C3L-04539.WXS.T.hg38 C3L-04539 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44d32def-ea17-4d6a-97a9-4326d8d2d45b/db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wxs_gdc_realn.bam 25583695395 BAM hg38 44d32def-ea17-4d6a-97a9-4326d8d2d45b storage1 C3L-04728.RNA-Seq.R1.T C3L-04728 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53da8d54-81eb-4038-88b2-3196cb814a69/200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R1_001.fastq.gz 5549023600 FASTQ NA 53da8d54-81eb-4038-88b2-3196cb814a69 storage1 C3L-04728.RNA-Seq.R2.T C3L-04728 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/872ca10d-39ab-43d2-a514-281d77055d1e/200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R2_001.fastq.gz 5848132575 FASTQ NA 872ca10d-39ab-43d2-a514-281d77055d1e storage1 C3L-04728.WGS.N.hg38 C3L-04728 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fb14feb-df82-4a97-aa74-fd1c460c89c2/89c144d0-e672-49fe-aa42-b3f957230089_wgs_gdc_realn.bam 63433937050 BAM hg38 6fb14feb-df82-4a97-aa74-fd1c460c89c2 storage1 C3L-04728.WGS.T.hg38 C3L-04728 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28d030b8-d65f-4e55-be7b-cf10aafbd54b/774eea8f-1aca-4b74-b987-b20e71621cda_wgs_gdc_realn.bam 72794626135 BAM hg38 28d030b8-d65f-4e55-be7b-cf10aafbd54b storage1 +C3L-04731.RNA-Seq.R1.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdcc07bb-3566-4ad0-b8af-832168038559/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ NA fdcc07bb-3566-4ad0-b8af-832168038559 storage1 +C3L-04731.RNA-Seq.R2.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d82e8a6e-aaca-4d9d-b26e-96046b568d10/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ NA d82e8a6e-aaca-4d9d-b26e-96046b568d10 storage1 C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fbd34a9-fc9d-4c2c-ba3b-96ffed456256/580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM hg38 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 storage1 C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b265dc17-8180-4962-8576-87cfde01f80d/b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM hg38 b265dc17-8180-4962-8576-87cfde01f80d storage1 C3L-04746.RNA-Seq.R1.A C3L-04746 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fa7166d-8384-4103-8c9f-7f5088af16d5/200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R1_001.fastq.gz 3452803753 FASTQ NA 6fa7166d-8384-4103-8c9f-7f5088af16d5 storage1 @@ -3364,6 +3595,8 @@ C3L-04792.RNA-Seq.R2.A C3L-04792 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04792.RNA-Seq.R2.T C3L-04792 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d542e6b6-4511-4dcf-a6c2-33b1adab5f18/200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R2_001.fastq.gz 4594352733 FASTQ NA d542e6b6-4511-4dcf-a6c2-33b1adab5f18 storage1 C3L-04792.WGS.N.hg38 C3L-04792 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e6c3df5-9ace-47df-ad27-5c5c1ccf902c/d58e9015-53d6-4a74-b3dc-55c27acd8016_wgs_gdc_realn.bam 73153320417 BAM hg38 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c storage1 C3L-04792.WGS.T.hg38 C3L-04792 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4ba2471-cdc0-4ac0-ad6c-d63174dfa996/d283d472-cff8-47b2-835d-2888bf62bb3c_wgs_gdc_realn.bam 80550743528 BAM hg38 e4ba2471-cdc0-4ac0-ad6c-d63174dfa996 storage1 +C3L-04795.RNA-Seq.R1.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ff10436-30c0-4571-a5f1-db72929506b8/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ NA 0ff10436-30c0-4571-a5f1-db72929506b8 storage1 +C3L-04795.RNA-Seq.R2.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c4c707-2ecb-44db-9c2b-04a6f624d67f/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ NA d3c4c707-2ecb-44db-9c2b-04a6f624d67f storage1 C3L-04795.WXS.N.hg38 C3L-04795 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bba78a37-3fd2-4f10-bd89-b298362fed0e/66331f85-ba28-4eb8-9df1-60a3cd38d91a_wxs_gdc_realn.bam 39013789635 BAM hg38 bba78a37-3fd2-4f10-bd89-b298362fed0e storage1 C3L-04795.WXS.T.hg38 C3L-04795 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/281e34f3-b97d-4b82-93a2-12421209116a/376e0e57-4948-421b-a670-e310f4072910_wxs_gdc_realn.bam 30536537645 BAM hg38 281e34f3-b97d-4b82-93a2-12421209116a storage1 C3L-04804.RNA-Seq.R1.A C3L-04804 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dc0c8e5-af32-494f-87ce-addfc5172591/200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R1_001.fastq.gz 3954974557 FASTQ NA 1dc0c8e5-af32-494f-87ce-addfc5172591 storage1 @@ -3380,12 +3613,14 @@ C3L-04808.WGS.N.hg38 C3L-04808 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-04808.WGS.T.hg38 C3L-04808 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59d4d215-4562-4cab-b497-130d60b73149/d9661c5a-e609-4b7a-8ddf-03ee137c8ab6_wgs_gdc_realn.bam 68211453696 BAM hg38 59d4d215-4562-4cab-b497-130d60b73149 storage1 C3L-04844.RNA-Seq.R1.T C3L-04844 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6765873c-3b79-4afe-a8e1-f783348fbb2e/190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4787124941 FASTQ NA 6765873c-3b79-4afe-a8e1-f783348fbb2e storage1 C3L-04844.RNA-Seq.R2.T C3L-04844 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a99719b-9806-4c7f-8fbb-7ca27b3c509b/190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 5510419498 FASTQ NA 3a99719b-9806-4c7f-8fbb-7ca27b3c509b storage1 +C3L-04848.RNA-Seq.genomic.T.hg38 C3L-04848 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b079630-5543-4d83-8679-5493aed29f31/4ef9bdbd-80aa-4724-90c4-cdd0d5b19951.rna_seq.genomic.gdc_realn.bam 14026277198 BAM hg38 8b079630-5543-4d83-8679-5493aed29f31 storage1 C3L-04848.RNA-Seq.R1.T C3L-04848 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4c2a1e1-dc6a-4438-84dc-c69b56ab3cbe/190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R1_001.fastq.gz 5465136410 FASTQ NA c4c2a1e1-dc6a-4438-84dc-c69b56ab3cbe storage1 C3L-04848.RNA-Seq.R2.T C3L-04848 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee7e05a9-2134-40f8-9aa5-53fa23fc2ef3/190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R2_001.fastq.gz 5588271010 FASTQ NA ee7e05a9-2134-40f8-9aa5-53fa23fc2ef3 storage1 C3L-04849.RNA-Seq.R1.T C3L-04849 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1477efe0-e758-4814-9202-918d9456d63c/190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R1_001.fastq.gz 4296837003 FASTQ NA 1477efe0-e758-4814-9202-918d9456d63c storage1 C3L-04849.RNA-Seq.R1.T C3L-04849 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34ac1a8a-6177-4064-b7aa-75875511e6bb/20210729_P3_F5_WB7988-Plate3_S65_R1_001.fastq.gz 1648171727 FASTQ NA 34ac1a8a-6177-4064-b7aa-75875511e6bb storage1 C3L-04849.RNA-Seq.R2.T C3L-04849 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0739385d-e93f-4da7-89d1-8d0ed8d74071/190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R2_001.fastq.gz 4922773030 FASTQ NA 0739385d-e93f-4da7-89d1-8d0ed8d74071 storage1 C3L-04849.RNA-Seq.R2.T C3L-04849 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0f945ea-cd4d-4071-8b46-cbcd65dd52d7/20210729_P3_F5_WB7988-Plate3_S65_R2_001.fastq.gz 1805612075 FASTQ NA a0f945ea-cd4d-4071-8b46-cbcd65dd52d7 storage1 +C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f000225d-5838-4974-a814-06f07b9733e1/9486a946-d6e0-42d9-961e-a1c14d606a4e.rna_seq.genomic.gdc_realn.bam 8944027681 BAM hg38 f000225d-5838-4974-a814-06f07b9733e1 storage1 C3L-04853.RNA-Seq.R1.T C3L-04853 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb075015-1db4-4ac0-b1e9-b44fcf3026f9/190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R1_001.fastq.gz 4212126039 FASTQ NA eb075015-1db4-4ac0-b1e9-b44fcf3026f9 storage1 C3L-04853.RNA-Seq.R2.T C3L-04853 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b447e253-da71-4eca-8d57-bbfbc0d80095/190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R2_001.fastq.gz 4349159879 FASTQ NA b447e253-da71-4eca-8d57-bbfbc0d80095 storage1 C3L-04854.RNA-Seq.R1.A C3L-04854 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e210dc35-2884-413e-bf8b-e12fd56ba168/200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 3975190285 FASTQ NA e210dc35-2884-413e-bf8b-e12fd56ba168 storage1 @@ -4541,6 +4776,8 @@ C3N-00194.RNA-Seq.R2.A C3N-00194 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-00194.RNA-Seq.R2.T C3N-00194 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/293d2b6b-a6dd-4849-a306-3bdb55eb8c9f/170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R2_001.fastq.gz 4432478207 FASTQ NA 293d2b6b-a6dd-4849-a306-3bdb55eb8c9f storage1 C3N-00194.RNA-Seq.R2.T.HET_E942y0 C3N-00194 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/799cae3c-ac8c-4fd6-aa65-826a415e4fe2/200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4153593395 FASTQ NA 799cae3c-ac8c-4fd6-aa65-826a415e4fe2 storage1 C3N-00194.RNA-Seq.R2.T.HET_yrYoZ6 C3N-00194 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e6a7015-d66e-41e9-8a38-844916f4d874/200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R2_001.fastq.gz 4609898999 FASTQ NA 0e6a7015-d66e-41e9-8a38-844916f4d874 storage1 +C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cda1a8b4-e862-4116-9835-28fe03d22f45/3cd2b803-ca88-4d1d-92fe-92f8ce26529e.rna_seq.genomic.gdc_realn.bam 10758984097 BAM hg38 cda1a8b4-e862-4116-9835-28fe03d22f45 storage1 +C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0e243fb-b269-4354-aedb-f809413ac6c1/2d0f5744-b6b4-4211-a436-24a778a9febe.rna_seq.genomic.gdc_realn.bam 8921865420 BAM hg38 a0e243fb-b269-4354-aedb-f809413ac6c1 storage1 C3N-00198.RNA-Seq.R1.A C3N-00198 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38c25f0d-fa3f-4f7d-816c-f6cb65bff37b/180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R1_001.fastq.gz 4316890587 FASTQ NA 38c25f0d-fa3f-4f7d-816c-f6cb65bff37b storage1 C3N-00198.RNA-Seq.R1.T C3N-00198 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9521ce65-a4f8-4dd2-8405-25181cab3d40/170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 4070882648 FASTQ NA 9521ce65-a4f8-4dd2-8405-25181cab3d40 storage1 C3N-00198.RNA-Seq.R2.A C3N-00198 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9d12862-a12d-41fc-b8bb-b6aba3457c35/180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R2_001.fastq.gz 4735227665 FASTQ NA c9d12862-a12d-41fc-b8bb-b6aba3457c35 storage1 @@ -4601,6 +4838,7 @@ C3N-00246.RNA-Seq.R1.T C3N-00246 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-00246.RNA-Seq.R2.T C3N-00246 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c6faf26-b644-4903-8866-4153d141fead/170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4639218644 FASTQ NA 6c6faf26-b644-4903-8866-4153d141fead storage1 C3N-00247.RNA-Seq.R1.T C3N-00247 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93f35b19-4f58-4809-b52d-8be64c0beb5e/171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4417867260 FASTQ NA 93f35b19-4f58-4809-b52d-8be64c0beb5e storage1 C3N-00247.RNA-Seq.R2.T C3N-00247 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33c91fa1-de4a-4bb9-9071-fc89e343ac1b/171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4747219538 FASTQ NA 33c91fa1-de4a-4bb9-9071-fc89e343ac1b storage1 +C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d9f735ab-743e-4cdd-8c04-8fea0056e4a0/c0d29ef9-858d-4b65-a27d-d64f5f8a3ba9.rna_seq.genomic.gdc_realn.bam 8810349366 BAM hg38 d9f735ab-743e-4cdd-8c04-8fea0056e4a0 storage1 C3N-00249.RNA-Seq.R1.T C3N-00249 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/610773b7-6a19-49c2-8b12-bb58d27184b3/170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3904396163 FASTQ NA 610773b7-6a19-49c2-8b12-bb58d27184b3 storage1 C3N-00249.RNA-Seq.R2.T C3N-00249 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5853ca64-9b14-49cb-9c49-18595e36626f/170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4385829043 FASTQ NA 5853ca64-9b14-49cb-9c49-18595e36626f storage1 C3N-00293.RNA-Seq.R1.A C3N-00293 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7c1bd83-f32c-4f75-ae4f-5a57e89e4cd4/171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R1_001.fastq.gz 3409416057 FASTQ NA d7c1bd83-f32c-4f75-ae4f-5a57e89e4cd4 storage1 @@ -4617,8 +4855,10 @@ C3N-00299.RNA-Seq.R1.T C3N-00299 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-00299.RNA-Seq.R2.T C3N-00299 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ea5625c-20dd-48b6-a2d9-e11d3c268c26/170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4094657090 FASTQ NA 9ea5625c-20dd-48b6-a2d9-e11d3c268c26 storage1 C3N-00300.RNA-Seq.R1.T C3N-00300 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b12e86cf-85b2-435c-88d0-0df9bcd5c49a/170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L008_R1_001.fastq.gz 4159030214 FASTQ NA b12e86cf-85b2-435c-88d0-0df9bcd5c49a storage1 C3N-00300.RNA-Seq.R2.T C3N-00300 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c37e8f4b-b040-44bc-b63b-009715a7681c/170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L008_R2_001.fastq.gz 4581574345 FASTQ NA c37e8f4b-b040-44bc-b63b-009715a7681c storage1 +C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4de6316-529f-4f07-968c-3fa636bc169b/f8ff4011-c015-46af-8cf2-f12393168a35.rna_seq.genomic.gdc_realn.bam 8055683077 BAM hg38 b4de6316-529f-4f07-968c-3fa636bc169b storage1 C3N-00302.RNA-Seq.R1.T C3N-00302 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82397376-7221-4de6-aa6a-1debda5561ac/170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R1_001.fastq.gz 3558625479 FASTQ NA 82397376-7221-4de6-aa6a-1debda5561ac storage1 C3N-00302.RNA-Seq.R2.T C3N-00302 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da8d50a5-d703-4617-9895-33814419e004/170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R2_001.fastq.gz 3833619168 FASTQ NA da8d50a5-d703-4617-9895-33814419e004 storage1 +C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/093a9013-b4fb-4ef2-b582-c63bf2163b38/3d9e8585-cba7-4ddb-9fbd-4a39d7c75f78.rna_seq.genomic.gdc_realn.bam 9474343083 BAM hg38 093a9013-b4fb-4ef2-b582-c63bf2163b38 storage1 C3N-00303.RNA-Seq.R1.T C3N-00303 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2205d97-18a4-469a-aec7-8aaee1908bda/170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R1_001.fastq.gz 4037979547 FASTQ NA a2205d97-18a4-469a-aec7-8aaee1908bda storage1 C3N-00303.RNA-Seq.R2.T C3N-00303 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cac8806d-8099-4e16-b51e-e6803842f737/170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R2_001.fastq.gz 4370195399 FASTQ NA cac8806d-8099-4e16-b51e-e6803842f737 storage1 C3N-00305.RNA-Seq.R1.T C3N-00305 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0323d74-da11-4d79-99da-99b0b1d33f72/170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R1_001.fastq.gz 3932273979 FASTQ NA f0323d74-da11-4d79-99da-99b0b1d33f72 storage1 @@ -4753,6 +4993,8 @@ C3N-00435.RNA-Seq.R1.A C3N-00435 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-00435.RNA-Seq.R1.T C3N-00435 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/15172d81-3595-4a42-bf38-ba8b6eee0e8b/170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 7003239286 FASTQ NA 15172d81-3595-4a42-bf38-ba8b6eee0e8b storage1 C3N-00435.RNA-Seq.R2.A C3N-00435 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf060020-f277-4eab-8e73-df7259e810eb/171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R2_001.fastq.gz 4365134017 FASTQ NA cf060020-f277-4eab-8e73-df7259e810eb storage1 C3N-00435.RNA-Seq.R2.T C3N-00435 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/483487b6-8ad1-4d26-906d-72991fdb0324/170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 7286704957 FASTQ NA 483487b6-8ad1-4d26-906d-72991fdb0324 storage1 +C3N-00436.RNA-Seq.genomic.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6869e692-131c-4b13-a354-db0175a87e77/ba3410dd-215a-4969-a0c5-529a809d598b.rna_seq.genomic.gdc_realn.bam 8449573905 BAM hg38 6869e692-131c-4b13-a354-db0175a87e77 storage1 +C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34f6dcbf-12ee-45a6-b9fe-22e784916d10/ad4ccaed-9382-47a6-8d5b-cab8001bcac2.rna_seq.genomic.gdc_realn.bam 9118647850 BAM hg38 34f6dcbf-12ee-45a6-b9fe-22e784916d10 storage1 C3N-00436.RNA-Seq.R1.A C3N-00436 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c61650b4-8e2b-4610-87a2-f37dca36095e/180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3322009050 FASTQ NA c61650b4-8e2b-4610-87a2-f37dca36095e storage1 C3N-00436.RNA-Seq.R1.T C3N-00436 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3772a9b-6281-46fd-bdb2-c3a3e4f58d9c/170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4338613527 FASTQ NA b3772a9b-6281-46fd-bdb2-c3a3e4f58d9c storage1 C3N-00436.RNA-Seq.R2.A C3N-00436 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69dd24b9-3215-4514-a47c-65525a18fb1e/180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3743308271 FASTQ NA 69dd24b9-3215-4514-a47c-65525a18fb1e storage1 @@ -4812,20 +5054,29 @@ C3N-00498.RNA-Seq.R1.A C3N-00498 HNSCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-00498.RNA-Seq.R1.T C3N-00498 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed67a97a-0690-4901-88ca-439c5ab6bc7d/170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R1_001.fastq.gz 4273765686 FASTQ NA ed67a97a-0690-4901-88ca-439c5ab6bc7d storage1 C3N-00498.RNA-Seq.R2.A C3N-00498 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d65ea6-0dbe-4412-902c-b2fd19487593/180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R2_001.fastq.gz 3494017219 FASTQ NA 02d65ea6-0dbe-4412-902c-b2fd19487593 storage1 C3N-00498.RNA-Seq.R2.T C3N-00498 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/888acb67-c9e7-40ee-a6c6-3c0e18a7ffc1/170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R2_001.fastq.gz 4672445899 FASTQ NA 888acb67-c9e7-40ee-a6c6-3c0e18a7ffc1 storage1 +C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58fe84ae-8f6a-442e-89d6-c59e3999e413/055f3a0f-d48e-409d-9e1d-90c26cc6bebc.rna_seq.genomic.gdc_realn.bam 8061985822 BAM hg38 58fe84ae-8f6a-442e-89d6-c59e3999e413 storage1 C3N-00511.RNA-Seq.R1.T C3N-00511 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7981a9cf-0215-4cf5-99d0-de2f99fb25cc/170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3618545492 FASTQ NA 7981a9cf-0215-4cf5-99d0-de2f99fb25cc storage1 C3N-00511.RNA-Seq.R2.T C3N-00511 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e66fe6f2-9722-41a3-baf7-dd9c097a090a/170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3905021077 FASTQ NA e66fe6f2-9722-41a3-baf7-dd9c097a090a storage1 +C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c2a119c-1ef2-4ea0-bd17-acbf1efd5299/4f9384d2-93a3-48db-8484-dcb29e7f1776.rna_seq.genomic.gdc_realn.bam 11127771633 BAM hg38 5c2a119c-1ef2-4ea0-bd17-acbf1efd5299 storage1 C3N-00512.RNA-Seq.R1.T C3N-00512 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd562d7c-a718-4244-878a-9d455ef427e8/170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4175780551 FASTQ NA dd562d7c-a718-4244-878a-9d455ef427e8 storage1 C3N-00512.RNA-Seq.R2.T C3N-00512 PDA RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4fbbe94-f99a-4dfb-abc3-35971fe83bde/48d1a5e8-481e-4b3f-94ac-6c297f0e3ef5.rna_seq.transcriptome.gdc_realn.bam 10659390306 BAM hg38 f4fbbe94-f99a-4dfb-abc3-35971fe83bde storage1 C3N-00681.RNA-Seq.genomic.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55743065-aaf8-445c-9756-99d9edb0569c/30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.genomic.gdc_realn.bam 7909952623 BAM hg38 55743065-aaf8-445c-9756-99d9edb0569c storage1 C3N-00681.RNA-Seq.R1.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182da2bf-ecc4-4df0-b857-d68da45b9a93/210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ NA 182da2bf-ecc4-4df0-b857-d68da45b9a93 storage1 C3N-00681.RNA-Seq.R2.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/670183c6-3c04-4e18-b129-3d104c270b33/210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ NA 670183c6-3c04-4e18-b129-3d104c270b33 storage1 @@ -5000,6 +5259,7 @@ C3N-00704.RNA-Seq.R1.A C3N-00704 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-00704.RNA-Seq.R1.T C3N-00704 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5373c83-5859-4af0-9cc8-d3362f26794b/170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R1_001.fastq.gz 3615965972 FASTQ NA a5373c83-5859-4af0-9cc8-d3362f26794b storage1 C3N-00704.RNA-Seq.R2.A C3N-00704 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d8a3157-9d5b-4941-9d37-a4c2856b1bfd/171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R2_001.fastq.gz 3700937499 FASTQ NA 8d8a3157-9d5b-4941-9d37-a4c2856b1bfd storage1 C3N-00704.RNA-Seq.R2.T C3N-00704 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/739f05f6-8611-4727-9603-118166c1ad30/170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R2_001.fastq.gz 3966919848 FASTQ NA 739f05f6-8611-4727-9603-118166c1ad30 storage1 +C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88b83619-2e12-43a4-b078-9aa7dab5c404/8eb73313-d0eb-434a-a08b-3b8c9e4f8bde.rna_seq.genomic.gdc_realn.bam 8852010459 BAM hg38 88b83619-2e12-43a4-b078-9aa7dab5c404 storage1 C3N-00709.RNA-Seq.R1.T C3N-00709 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5533af10-acc9-4398-b820-c8b135255a5b/190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R1_001.fastq.gz 3992326363 FASTQ NA 5533af10-acc9-4398-b820-c8b135255a5b storage1 C3N-00709.RNA-Seq.R2.T C3N-00709 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eba68b0b-e839-4a33-b3bc-c00412f3fe80/190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R2_001.fastq.gz 4192854035 FASTQ NA eba68b0b-e839-4a33-b3bc-c00412f3fe80 storage1 C3N-00715.RNA-Seq.R1.A C3N-00715 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/458cc937-d7c6-4c8e-ba37-30fd0ed42c3d/190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 3826716047 FASTQ NA 458cc937-d7c6-4c8e-ba37-30fd0ed42c3d storage1 @@ -5154,10 +5414,13 @@ C3N-00953.RNA-Seq.R1.T.HET_ommrR3 C3N-00953 CCRCC RNA-Seq tumor /storage1/fs1/di C3N-00953.RNA-Seq.R2.T C3N-00953 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cec05f2-4b61-4862-bff8-4d0b9e01a47f/170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R2_001.fastq.gz 5067259916 FASTQ NA 9cec05f2-4b61-4862-bff8-4d0b9e01a47f storage1 C3N-00953.RNA-Seq.R2.T.HET_om0vr3 C3N-00953 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0bd50e24-a6a0-4c2c-ab7b-8d212adbce91/200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R2_001.fastq.gz 3902270374 FASTQ NA 0bd50e24-a6a0-4c2c-ab7b-8d212adbce91 storage1 C3N-00953.RNA-Seq.R2.T.HET_ommrR3 C3N-00953 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/570b6c64-408f-4ced-9426-d558d138f9a2/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R2_001.fastq.gz 4359870205 FASTQ NA 570b6c64-408f-4ced-9426-d558d138f9a2 storage1 +C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5d78263-72cb-4914-83d3-97d4c7e59469/dfac800b-7d07-49ab-9a3d-3854b0fb9bdb.rna_seq.genomic.gdc_realn.bam 12068357739 BAM hg38 b5d78263-72cb-4914-83d3-97d4c7e59469 storage1 +C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8489cfdf-7e98-4abf-b1f5-19db81214663/df7d3657-77e3-4a99-bb69-3035bf1ccf61.rna_seq.genomic.gdc_realn.bam 7536680276 BAM hg38 8489cfdf-7e98-4abf-b1f5-19db81214663 storage1 C3N-00954.RNA-Seq.R1.A C3N-00954 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/367a3e0d-14bc-4611-a9ef-7e0ad04447da/180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R1_001.fastq.gz 5887497961 FASTQ NA 367a3e0d-14bc-4611-a9ef-7e0ad04447da storage1 C3N-00954.RNA-Seq.R1.T C3N-00954 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e6323501-1e7d-4e7d-9b40-f61d8dff75c8/170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3472421229 FASTQ NA e6323501-1e7d-4e7d-9b40-f61d8dff75c8 storage1 C3N-00954.RNA-Seq.R2.A C3N-00954 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00fdc20d-e0f0-42f5-b1b7-bd214d8eaff8/180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R2_001.fastq.gz 6311998386 FASTQ NA 00fdc20d-e0f0-42f5-b1b7-bd214d8eaff8 storage1 C3N-00954.RNA-Seq.R2.T C3N-00954 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a7e74dfb-0fd4-48b1-b5ef-9019201b7a2a/170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3784810336 FASTQ NA a7e74dfb-0fd4-48b1-b5ef-9019201b7a2a storage1 +C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c141c73c-c1d4-46c5-a233-78213237d952/aac0b238-0c48-4a76-98fb-48af7cf0546d.rna_seq.genomic.gdc_realn.bam 9406169712 BAM hg38 c141c73c-c1d4-46c5-a233-78213237d952 storage1 C3N-00957.RNA-Seq.R1.T C3N-00957 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9fa0d97-bade-42eb-b268-673f13619093/171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R1_001.fastq.gz 3911560268 FASTQ NA e9fa0d97-bade-42eb-b268-673f13619093 storage1 C3N-00957.RNA-Seq.R2.T C3N-00957 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3320297a-0634-4b50-921b-d2619774fab7/171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R2_001.fastq.gz 4361482381 FASTQ NA 3320297a-0634-4b50-921b-d2619774fab7 storage1 C3N-00958.RNA-Seq.R1.A C3N-00958 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5b55cfb-c53e-4b95-bbf1-b60345ff71cf/210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R1_001.fastq.gz 4609680825 FASTQ NA e5b55cfb-c53e-4b95-bbf1-b60345ff71cf storage1 @@ -5182,10 +5445,13 @@ C3N-01007.RNA-Seq.R1.T C3N-01007 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3N-01007.RNA-Seq.R2.T C3N-01007 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98aa1cc5-591d-43c4-9b91-0d395c802611/171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R2_001.fastq.gz 4334268791 FASTQ NA 98aa1cc5-591d-43c4-9b91-0d395c802611 storage1 C3N-01008.RNA-Seq.R1.T C3N-01008 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/746a2984-4434-48b2-bdcb-302434f58f19/171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3884231388 FASTQ NA 746a2984-4434-48b2-bdcb-302434f58f19 storage1 C3N-01008.RNA-Seq.R2.T C3N-01008 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd9117e2-c12d-47ac-a9de-642d5a4a3cee/171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4179043586 FASTQ NA bd9117e2-c12d-47ac-a9de-642d5a4a3cee storage1 +C3N-01011.RNA-Seq.genomic.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f0a4d78-285e-497b-a2e7-ab84cd1a7e06/90e93d89-8e99-4771-8591-9a04a8eee23f.rna_seq.genomic.gdc_realn.bam 9591896366 BAM hg38 0f0a4d78-285e-497b-a2e7-ab84cd1a7e06 storage1 +C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a638e718-47eb-43cf-bb59-273366d0e978/edf153b0-3092-411c-b03a-090fe0630576.rna_seq.genomic.gdc_realn.bam 9304809212 BAM hg38 a638e718-47eb-43cf-bb59-273366d0e978 storage1 C3N-01011.RNA-Seq.R1.A C3N-01011 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14df59ba-a33c-4c06-a797-f354f8f5a49d/180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3961400843 FASTQ NA 14df59ba-a33c-4c06-a797-f354f8f5a49d storage1 C3N-01011.RNA-Seq.R1.T C3N-01011 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f647f91a-14f2-4b99-b4d7-13a9ec2c2b77/170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4357361033 FASTQ NA f647f91a-14f2-4b99-b4d7-13a9ec2c2b77 storage1 C3N-01011.RNA-Seq.R2.A C3N-01011 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a55dd87b-078c-4637-8554-87d1fe3d3b0c/180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R2_001.fastq.gz 4042640158 FASTQ NA a55dd87b-078c-4637-8554-87d1fe3d3b0c storage1 C3N-01011.RNA-Seq.R2.T C3N-01011 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21e97bfd-6735-4b9e-8a15-5012a3699da4/170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4713123370 FASTQ NA 21e97bfd-6735-4b9e-8a15-5012a3699da4 storage1 +C3N-01012.RNA-Seq.genomic.T.hg38 C3N-01012 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24925754-92c3-4a23-8356-cce927f72c7f/9f0a72a1-aaaa-4147-aadd-ee7fbab14513.rna_seq.genomic.gdc_realn.bam 11979143872 BAM hg38 24925754-92c3-4a23-8356-cce927f72c7f storage1 C3N-01012.RNA-Seq.R1.T C3N-01012 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8377ab7e-9378-426f-b897-316df8584239/190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R1_001.fastq.gz 5425874563 FASTQ NA 8377ab7e-9378-426f-b897-316df8584239 storage1 C3N-01012.RNA-Seq.R2.T C3N-01012 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d33aabf6-72e4-4c00-ad25-3d3cfd351f5a/190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R2_001.fastq.gz 6204358818 FASTQ NA d33aabf6-72e4-4c00-ad25-3d3cfd351f5a storage1 C3N-01016.RNA-Seq.R1.A C3N-01016 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fe2189b-e03b-42d3-bc1f-19f3829bf551/171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3939725902 FASTQ NA 9fe2189b-e03b-42d3-bc1f-19f3829bf551 storage1 @@ -5298,14 +5564,19 @@ C3N-01091.RNA-Seq.R1.A C3N-01091 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-01091.RNA-Seq.R1.T C3N-01091 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abd032a1-3c71-4853-a8bc-ed677c4b9c33/190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 2953584806 FASTQ NA abd032a1-3c71-4853-a8bc-ed677c4b9c33 storage1 C3N-01091.RNA-Seq.R2.A C3N-01091 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/334710ba-9516-42a2-8cc8-853f9e6105f8/190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R2_001.fastq.gz 4299492000 FASTQ NA 334710ba-9516-42a2-8cc8-853f9e6105f8 storage1 C3N-01091.RNA-Seq.R2.T C3N-01091 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb4a8318-d8c4-475e-b06e-6f374c990db7/190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3231197568 FASTQ NA bb4a8318-d8c4-475e-b06e-6f374c990db7 storage1 +C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/050460ea-6b34-4fcf-8c67-81323fae8e71/242a2ff6-a9c7-4bfb-9316-0214c015c015.rna_seq.genomic.gdc_realn.bam 10077580481 BAM hg38 050460ea-6b34-4fcf-8c67-81323fae8e71 storage1 C3N-01165.RNA-Seq.R1.T C3N-01165 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef9122ed-25a0-4e91-903f-ec3cf56105ee/171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4376687728 FASTQ NA ef9122ed-25a0-4e91-903f-ec3cf56105ee storage1 C3N-01165.RNA-Seq.R2.T C3N-01165 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f12b59a-8a2a-4e1f-96b6-8a72c5a9737d/171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4712899554 FASTQ NA 4f12b59a-8a2a-4e1f-96b6-8a72c5a9737d storage1 +C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1661cc5-1476-4f1c-8079-78de9a18ce4b/68b98d5a-3f6a-473b-9aed-8b1219e416dc.rna_seq.genomic.gdc_realn.bam 10665812889 BAM hg38 a1661cc5-1476-4f1c-8079-78de9a18ce4b storage1 C3N-01166.RNA-Seq.R1.T C3N-01166 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70698283-5209-4695-a659-76d7963312e2/171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 4542018014 FASTQ NA 70698283-5209-4695-a659-76d7963312e2 storage1 C3N-01166.RNA-Seq.R2.T C3N-01166 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ccd8a1b9-df8e-4248-a09b-f60845d23eac/171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 5112929460 FASTQ NA ccd8a1b9-df8e-4248-a09b-f60845d23eac storage1 +C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca651b7c-5be4-41c7-95f5-95fef7b32cc3/9e8ab4ab-80c8-415a-bd8c-628920e8f55a.rna_seq.genomic.gdc_realn.bam 8551322091 BAM hg38 ca651b7c-5be4-41c7-95f5-95fef7b32cc3 storage1 C3N-01167.RNA-Seq.R1.T C3N-01167 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e94a5181-c7d1-401a-a4de-db98f6f1c368/171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R1_001.fastq.gz 4560010112 FASTQ NA e94a5181-c7d1-401a-a4de-db98f6f1c368 storage1 C3N-01167.RNA-Seq.R2.T C3N-01167 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f7a6bd7-14ee-42df-9f88-f608fea0a6a4/171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R2_001.fastq.gz 4817365384 FASTQ NA 9f7a6bd7-14ee-42df-9f88-f608fea0a6a4 storage1 +C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d797a95-bbfa-4798-b594-3819822c2a8b/2153b0c8-f9a0-4c5c-b2be-4674dff93a1a.rna_seq.genomic.gdc_realn.bam 8663426819 BAM hg38 4d797a95-bbfa-4798-b594-3819822c2a8b storage1 C3N-01168.RNA-Seq.R1.T C3N-01168 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37b2dbf1-2785-4b4d-b38d-8a84fd9c0a66/171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3919471422 FASTQ NA 37b2dbf1-2785-4b4d-b38d-8a84fd9c0a66 storage1 C3N-01168.RNA-Seq.R2.T C3N-01168 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a382af42-66b1-4e2d-a90d-f8548c169d98/171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4224130212 FASTQ NA a382af42-66b1-4e2d-a90d-f8548c169d98 storage1 +C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72fd9b3e-ad2e-401c-8a16-de0c6eefc860/23e43a62-39b6-445c-ae96-871d1ed0981f.rna_seq.genomic.gdc_realn.bam 9845556524 BAM hg38 72fd9b3e-ad2e-401c-8a16-de0c6eefc860 storage1 C3N-01169.RNA-Seq.R1.T C3N-01169 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3df22693-51a4-42aa-b67b-7d2ffccdc2af/171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 4336908193 FASTQ NA 3df22693-51a4-42aa-b67b-7d2ffccdc2af storage1 C3N-01169.RNA-Seq.R2.T C3N-01169 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/768cd08d-2cd7-4826-8f30-43c739f3894d/171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 4605952804 FASTQ NA 768cd08d-2cd7-4826-8f30-43c739f3894d storage1 C3N-01171.RNA-Seq.R1.T C3N-01171 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ea16774-4576-4e76-82cc-9ea47d90173d/20210729_P3_G9_WB7988-Plate3_S81_R1_001.fastq.gz 15438164232 FASTQ NA 0ea16774-4576-4e76-82cc-9ea47d90173d storage1 @@ -5345,14 +5616,18 @@ C3N-01191.WXS.A C3N-01191 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Act C3N-01191.WXS.A.hg38 C3N-01191 GBM WXS tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a40bdbe8-5de1-484e-964f-ff03bf16e848/a926769c-4f8b-489a-9339-88c74a323423_wxs_gdc_realn.bam 39150535552 BAM hg38 a40bdbe8-5de1-484e-964f-ff03bf16e848 storage1 C3N-01191.WXS.N C3N-01191 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42123d2d-53fd-445f-a834-939085063605/CPT0402750002.WholeExome.RP-1303.bam 35545540392 BAM hg19 42123d2d-53fd-445f-a834-939085063605 storage1 C3N-01191.WXS.N.hg38 C3N-01191 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/693176e7-e87c-49ef-9740-6f39f73e2633/a0970679-8442-4057-b84f-477450a88256_wxs_gdc_realn.bam 49650135090 BAM hg38 693176e7-e87c-49ef-9740-6f39f73e2633 storage1 +C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e0cac4e-ae60-4a00-a3f3-97193372485d/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.chimeric.gdc_realn.bam 53111853 BAM hg38 0e0cac4e-ae60-4a00-a3f3-97193372485d storage1 C3N-01192.RNA-Seq.R1.T C3N-01192 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8586880b-19f8-43da-a85b-7ffc96dcfe6e/171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R1_001.fastq.gz 4559078143 FASTQ NA 8586880b-19f8-43da-a85b-7ffc96dcfe6e storage1 C3N-01192.RNA-Seq.R2.T C3N-01192 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/400ea065-5905-41ba-86de-b5986720714d/171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R2_001.fastq.gz 5032932202 FASTQ NA 400ea065-5905-41ba-86de-b5986720714d storage1 +C3N-01192.RNA-Seq.transcriptome.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b344fe26-5979-4b53-8d6a-1e13540fb7dd/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.transcriptome.gdc_realn.bam 10892346070 BAM hg38 b344fe26-5979-4b53-8d6a-1e13540fb7dd storage1 C3N-01194.RNA-Seq.R1.A C3N-01194 LSCC RNA-Seq tissue_normal 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe123d94-ffe4-4a32-8729-df53114e81b9/170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 4230230199 FASTQ NA fe123d94-ffe4-4a32-8729-df53114e81b9 storage1 +C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46f708f2-3985-442a-a64e-e66d5e595295/1a4dcfe0-7950-4957-ba2d-a52e74c3eac7.rna_seq.chimeric.gdc_realn.bam 49332849 BAM hg38 46f708f2-3985-442a-a64e-e66d5e595295 storage1 C3N-01196.RNA-Seq.R1.T C3N-01196 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cf704de-fe0f-426b-8067-eece3a94120e/170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ NA 9cf704de-fe0f-426b-8067-eece3a94120e storage1 C3N-01196.RNA-Seq.R2.T C3N-01196 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0149b324-0f53-4425-aed2-1d785545cce6/170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ NA 0149b324-0f53-4425-aed2-1d785545cce6 storage1 +C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0735aac-d346-43ba-81c1-4054b7c906c3/1a4dcfe0-7950-4957-ba2d-a52e74c3eac7.rna_seq.transcriptome.gdc_realn.bam 7190041368 BAM hg38 a0735aac-d346-43ba-81c1-4054b7c906c3 storage1 C3N-01197.RNA-Seq.genomic.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffe3453d-a051-4309-ad40-267a041fcc47/cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.genomic.gdc_realn.bam 7339367256 BAM hg38 ffe3453d-a051-4309-ad40-267a041fcc47 storage1 C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 @@ -5427,8 +5702,10 @@ C3N-01270.RNA-Seq.R1.T C3N-01270 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-01270.RNA-Seq.R2.T C3N-01270 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/daca7c43-c7a1-490b-a280-1fa6dae51b2e/210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 4643494347 FASTQ NA daca7c43-c7a1-490b-a280-1fa6dae51b2e storage1 C3N-01270.WGS.N.hg38 C3N-01270 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22bc60dc-186d-4097-bd75-e17b16c2f828/a28bbf6b-2874-4a64-b595-677c311757ec_wgs_gdc_realn.bam 72517616586 BAM hg38 22bc60dc-186d-4097-bd75-e17b16c2f828 storage1 C3N-01270.WGS.T.hg38 C3N-01270 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79848237-2bc5-4312-bff2-8fb2e28b01d7/3e9dc217-f4cf-44f0-ac2c-e354ab41a3e4_wgs_gdc_realn.bam 104013512562 BAM hg38 79848237-2bc5-4312-bff2-8fb2e28b01d7 storage1 +C3N-01334.RNA-Seq.chimeric.T.hg38 C3N-01334 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbda1f0b-343f-4170-a947-46dfb18fd158/5df0c6c8-8eba-4338-8d89-b17e7850409e.rna_seq.chimeric.gdc_realn.bam 128585819 BAM hg38 bbda1f0b-343f-4170-a947-46dfb18fd158 storage1 C3N-01334.RNA-Seq.R1.T C3N-01334 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc957f8-1cd0-4197-96b8-30bd1a5cc776/180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R1_001.fastq.gz 3964104440 FASTQ NA 3cc957f8-1cd0-4197-96b8-30bd1a5cc776 storage1 C3N-01334.RNA-Seq.R2.T C3N-01334 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6823ef4-4fb2-4188-8214-4de92ce913a2/180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R2_001.fastq.gz 4396759449 FASTQ NA a6823ef4-4fb2-4188-8214-4de92ce913a2 storage1 +C3N-01334.RNA-Seq.transcriptome.T.hg38 C3N-01334 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/876554f1-7d5f-47d8-9f50-ac4d65f5facc/5df0c6c8-8eba-4338-8d89-b17e7850409e.rna_seq.transcriptome.gdc_realn.bam 8008207859 BAM hg38 876554f1-7d5f-47d8-9f50-ac4d65f5facc storage1 C3N-01337.RNA-Seq.R1.A C3N-01337 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9/180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 2503193362 FASTQ NA d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9 storage1 C3N-01337.RNA-Seq.R1.T C3N-01337 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20270207-1151-4641-b428-6b42171dd34b/20210723_P2_E1_WB7988-plate2_S49_R1_001.fastq.gz 5846796128 FASTQ NA 20270207-1151-4641-b428-6b42171dd34b storage1 C3N-01337.RNA-Seq.R1.T C3N-01337 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea84dfa7-362e-41bd-af0a-9183260cee41/171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4788972008 FASTQ NA ea84dfa7-362e-41bd-af0a-9183260cee41 storage1 @@ -5475,8 +5752,10 @@ C3N-01362.RNA-Seq.R1.T C3N-01362 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-01362.RNA-Seq.R2.T C3N-01362 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/199a7fe0-1412-496f-a1b0-83e313664353/210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 7328988483 FASTQ NA 199a7fe0-1412-496f-a1b0-83e313664353 storage1 C3N-01362.WGS.N.hg38 C3N-01362 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8118ada0-0d7e-4ef2-a989-72ddfb396325/ecf883e0-2dfe-4ae3-b792-55a66cfb6008_wgs_gdc_realn.bam 77722214181 BAM hg38 8118ada0-0d7e-4ef2-a989-72ddfb396325 storage1 C3N-01362.WGS.T.hg38 C3N-01362 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fed8e0d-1905-4605-a135-22e3c96ea76d/af3bad5c-867a-41a6-bafe-e1dce7ae4d61_wgs_gdc_realn.bam 110602045139 BAM hg38 9fed8e0d-1905-4605-a135-22e3c96ea76d storage1 +C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7440a99-7aa5-460e-9b8c-4dbca84af7a8/190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R1_001.fastq.gz 3189427831 FASTQ NA d7440a99-7aa5-460e-9b8c-4dbca84af7a8 storage1 C3N-01719.RNA-Seq.R2.A C3N-01719 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45781656-43b0-4ca4-a6e3-26d7f2872ba7/190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R2_001.fastq.gz 5487729066 FASTQ NA 45781656-43b0-4ca4-a6e3-26d7f2872ba7 storage1 @@ -5790,8 +6100,10 @@ C3N-01768.RNA-Seq.R2.A C3N-01768 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-01768.RNA-Seq.R2.T C3N-01768 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80d49158-38aa-452a-aec9-2639d913b7bd/200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R2_001.fastq.gz 4332523665 FASTQ NA 80d49158-38aa-452a-aec9-2639d913b7bd storage1 C3N-01768.WGS.N.hg38 C3N-01768 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2891e61e-9bd9-4d13-9464-8f400cf56e48/886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wgs_gdc_realn.bam 93088951602 BAM hg38 2891e61e-9bd9-4d13-9464-8f400cf56e48 storage1 C3N-01768.WGS.T.hg38 C3N-01768 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1692c0c9-db04-4436-b4c8-8f1fc8bb0947/a4ebedaa-1f18-4ae2-9780-4c700c702a5f_wgs_gdc_realn.bam 72094930863 BAM hg38 1692c0c9-db04-4436-b4c8-8f1fc8bb0947 storage1 +C3N-01798.RNA-Seq.chimeric.T.hg38 C3N-01798 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c7e8fc5-2626-42de-9325-39260887284e/ea4e4620-f51f-4725-bc5e-1fd95b55f774.rna_seq.chimeric.gdc_realn.bam 33452981 BAM hg38 0c7e8fc5-2626-42de-9325-39260887284e storage1 C3N-01798.RNA-Seq.R1.T C3N-01798 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/005e5a7c-4809-472d-8819-a25f7833a631/180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 4180544485 FASTQ NA 005e5a7c-4809-472d-8819-a25f7833a631 storage1 C3N-01798.RNA-Seq.R2.T C3N-01798 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbf5b3a8-d267-4999-8a95-583d264a55d8/180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4540740441 FASTQ NA bbf5b3a8-d267-4999-8a95-583d264a55d8 storage1 +C3N-01798.RNA-Seq.transcriptome.T.hg38 C3N-01798 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca6c0ada-86f7-44ef-a0e0-a1ba0bea4972/ea4e4620-f51f-4725-bc5e-1fd95b55f774.rna_seq.transcriptome.gdc_realn.bam 9770218745 BAM hg38 ca6c0ada-86f7-44ef-a0e0-a1ba0bea4972 storage1 C3N-01799.RNA-Seq.R1.A C3N-01799 LUAD RNA-Seq tissue_normal 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RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a71bea30-6a66-4c8f-b526-464c906f5b1a/171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R1_001.fastq.gz 3429150091 FASTQ NA a71bea30-6a66-4c8f-b526-464c906f5b1a storage1 C3N-01808.RNA-Seq.R2.A C3N-01808 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b33516d1-94be-41ed-9b6d-ed28b701b8c8/171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R2_001.fastq.gz 4993203081 FASTQ NA b33516d1-94be-41ed-9b6d-ed28b701b8c8 storage1 C3N-01808.RNA-Seq.R2.T C3N-01808 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbe46ce6-99dc-400d-9e4b-f4ec1fd4a1e8/171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R2_001.fastq.gz 3748221155 FASTQ NA bbe46ce6-99dc-400d-9e4b-f4ec1fd4a1e8 storage1 +C3N-01814.RNA-Seq.chimeric.T.hg38 C3N-01814 GBM RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bae560c8-d7af-44f5-965a-da697a6e0e1c/190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R1_001.fastq.gz 2878963606 FASTQ NA bae560c8-d7af-44f5-965a-da697a6e0e1c storage1 C3N-01858.RNA-Seq.R1.T C3N-01858 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf3622fe-6ee6-4a63-88f7-696916e75a5d/20210714_P1_E1_WB7988_plate1_S49_R1_001.fastq.gz 6405948347 FASTQ NA bf3622fe-6ee6-4a63-88f7-696916e75a5d storage1 C3N-01858.RNA-Seq.R2.T C3N-01858 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74695714-ccc5-4c1e-bbbd-03c1f3f37dd3/20210714_P1_E1_WB7988_plate1_S49_R2_001.fastq.gz 6600620434 FASTQ NA 74695714-ccc5-4c1e-bbbd-03c1f3f37dd3 storage1 @@ -5927,6 +6257,7 @@ C3N-01893.RNA-Seq.R1.A C3N-01893 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-01893.RNA-Seq.R1.T C3N-01893 LSCC RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f89df8c-0e61-443f-864c-3484e1b8dc03/47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.genomic.gdc_realn.bam 12072962303 BAM hg38 2f89df8c-0e61-443f-864c-3484e1b8dc03 storage1 C3N-01897.RNA-Seq.R1.T C3N-01897 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/393c145c-4d08-45f0-bd45-efd44aa457d4/190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R1_001.fastq.gz 3621322188 FASTQ NA 393c145c-4d08-45f0-bd45-efd44aa457d4 storage1 C3N-01897.RNA-Seq.R2.T C3N-01897 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec5a4c86-6c49-41a3-b04a-4983b4862110/190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R2_001.fastq.gz 3895274347 FASTQ NA ec5a4c86-6c49-41a3-b04a-4983b4862110 storage1 C3N-01897.WXS.N C3N-01897 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e40ea4d3-8d13-42a4-8b2e-e774765273b7/CPT0162360002.WholeExome.RP-1303.bam 21906030833 BAM hg19 e40ea4d3-8d13-42a4-8b2e-e774765273b7 storage1 @@ -5956,6 +6287,7 @@ C3N-01899.WXS.N.BIOTEXT_k9MkzY.hg38 C3N-01899 PDA WXS blood_normal /storage1/fs1 C3N-01899.WXS.T.BIOTEXT_1x7jGV.hg38 C3N-01899 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96ed209d-ca09-4aed-b304-99ebdfdfae70/c2bc2e43-e735-4a74-a78a-5ad7f9dfb4ce_wxs_gdc_realn.bam 29949678812 BAM hg38 96ed209d-ca09-4aed-b304-99ebdfdfae70 storage1 C3N-01899.WXS.T.BIOTEXT_2zJR71.hg38 C3N-01899 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8e3fd14-80f3-4fe4-b53b-1128d6131340/8e055081-713b-4196-932a-2ee5a04db44e_wxs_gdc_realn.bam 42880039006 BAM hg38 a8e3fd14-80f3-4fe4-b53b-1128d6131340 storage1 C3N-01899.WXS.T.BIOTEXT_3BJlyO.hg38 C3N-01899 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38fb1142-7649-4b70-a4cd-b4ac272297c7/367fe4ff-5a2e-4cb8-acd4-777fe8b3499d_wxs_gdc_realn.bam 37666160591 BAM hg38 38fb1142-7649-4b70-a4cd-b4ac272297c7 storage1 +C3N-01900.RNA-Seq.genomic.T.hg38 C3N-01900 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5706fa6-a92b-40d2-a2bf-b47844381471/99ac380d-73eb-41cf-ab1c-e0ed4c95eb77.rna_seq.genomic.gdc_realn.bam 8024048436 BAM hg38 a5706fa6-a92b-40d2-a2bf-b47844381471 storage1 C3N-01900.RNA-Seq.R1.T C3N-01900 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb3070e5-30fc-4105-bf8f-05f278a1bd7c/190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R1_001.fastq.gz 3903330593 FASTQ NA eb3070e5-30fc-4105-bf8f-05f278a1bd7c storage1 C3N-01900.RNA-Seq.R2.T C3N-01900 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c2f2b11-752e-4bdf-b0c0-facfe7ddf8b6/190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R2_001.fastq.gz 4027328450 FASTQ NA 8c2f2b11-752e-4bdf-b0c0-facfe7ddf8b6 storage1 C3N-01902.RNA-Seq.R1.A C3N-01902 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9892b3ac-a2cd-4199-a0bc-7c1e9fc0a1d9/190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R1_001.fastq.gz 3646283706 FASTQ NA 9892b3ac-a2cd-4199-a0bc-7c1e9fc0a1d9 storage1 @@ -5976,6 +6308,7 @@ C3N-01905.RNA-Seq.R1.A C3N-01905 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-01905.RNA-Seq.R1.T C3N-01905 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/634ad8f8-227e-4742-a2ea-a224081e3544/190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R1_001.fastq.gz 3883414587 FASTQ NA 634ad8f8-227e-4742-a2ea-a224081e3544 storage1 C3N-01905.RNA-Seq.R2.A C3N-01905 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/857de801-17c6-4e83-9b3a-6bc0ca7884a1/190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R2_001.fastq.gz 5056705329 FASTQ NA 857de801-17c6-4e83-9b3a-6bc0ca7884a1 storage1 C3N-01905.RNA-Seq.R2.T C3N-01905 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2f011af-3c00-4720-931f-9a97b46e081a/190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R2_001.fastq.gz 4017058100 FASTQ NA c2f011af-3c00-4720-931f-9a97b46e081a storage1 +C3N-01907.RNA-Seq.genomic.T.hg38 C3N-01907 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ff2731b-8775-4702-a0f1-2bd20387f033/2aeb5983-8002-40de-a2ed-ff376aa321af.rna_seq.genomic.gdc_realn.bam 11609819000 BAM hg38 4ff2731b-8775-4702-a0f1-2bd20387f033 storage1 C3N-01907.RNA-Seq.R1.T C3N-01907 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b64b6c-529a-4724-b8ce-38a225cb572c/190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 4432083755 FASTQ NA 65b64b6c-529a-4724-b8ce-38a225cb572c storage1 C3N-01907.RNA-Seq.R2.T C3N-01907 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bad5f741-5f43-4cce-b96d-0a559c9336be/190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 4919976698 FASTQ NA bad5f741-5f43-4cce-b96d-0a559c9336be storage1 C3N-01943.RNA-Seq.R1.A C3N-01943 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45275e46-5062-4d69-a686-d04d5547f604/190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R1_001.fastq.gz 3793274236 FASTQ NA 45275e46-5062-4d69-a686-d04d5547f604 storage1 @@ -6010,8 +6343,11 @@ C3N-01989.RNA-Seq.R1.A C3N-01989 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-01989.RNA-Seq.R1.T C3N-01989 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5421d66-b130-4b37-9c56-a4b630cf8b1f/181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R1_001.fastq.gz 3924002741 FASTQ NA f5421d66-b130-4b37-9c56-a4b630cf8b1f storage1 C3N-01989.RNA-Seq.R2.A C3N-01989 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/775bd14f-1502-47bb-93aa-e9fa6b4e8907/190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R2_001.fastq.gz 4333735532 FASTQ NA 775bd14f-1502-47bb-93aa-e9fa6b4e8907 storage1 C3N-01989.RNA-Seq.R2.T C3N-01989 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/994ac653-5dea-46a6-8d78-5df97a55295a/181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R2_001.fastq.gz 4045843004 FASTQ NA 994ac653-5dea-46a6-8d78-5df97a55295a storage1 +C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbe23784-f8b3-40a1-be68-2595ba6e3bb3/d31bec57-bb27-4dfd-aec6-09c8d855dff1.rna_seq.genomic.gdc_realn.bam 8864184070 BAM hg38 bbe23784-f8b3-40a1-be68-2595ba6e3bb3 storage1 C3N-01997.RNA-Seq.R1.T C3N-01997 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/177543fe-9718-4c49-bb13-0ec3f60ed071/180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R1_001.fastq.gz 4007138952 FASTQ NA 177543fe-9718-4c49-bb13-0ec3f60ed071 storage1 C3N-01997.RNA-Seq.R2.T C3N-01997 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4c37175-17fd-4651-a5f0-fa665eb50b0c/180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R2_001.fastq.gz 4453037870 FASTQ NA f4c37175-17fd-4651-a5f0-fa665eb50b0c storage1 +C3N-01998.RNA-Seq.genomic.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ff7805a-6b83-4e95-965d-102433495934/c176f25f-5df2-4b4f-8dfc-d74bf1f5b516.rna_seq.genomic.gdc_realn.bam 8375751610 BAM hg38 3ff7805a-6b83-4e95-965d-102433495934 storage1 +C3N-01998.RNA-Seq.genomic.T.hg38 C3N-01998 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd7f00bf-4be2-4b6c-bf65-22100fb50486/9378777f-c1ba-4e68-aada-9c5db0958ab8.rna_seq.genomic.gdc_realn.bam 8615494302 BAM hg38 bd7f00bf-4be2-4b6c-bf65-22100fb50486 storage1 C3N-01998.RNA-Seq.R1.A C3N-01998 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86882593-3b6f-4a79-af88-24a828c877a9/180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 3590086088 FASTQ NA 86882593-3b6f-4a79-af88-24a828c877a9 storage1 C3N-01998.RNA-Seq.R1.T C3N-01998 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1e65a39-cf9b-4325-b009-467c2a0764db/180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R1_001.fastq.gz 3750856780 FASTQ NA d1e65a39-cf9b-4325-b009-467c2a0764db storage1 C3N-01998.RNA-Seq.R2.A C3N-01998 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71c59940-7c95-484e-b602-535c759dc5aa/180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4051862046 FASTQ NA 71c59940-7c95-484e-b602-535c759dc5aa storage1 @@ -6030,6 +6366,8 @@ C3N-02003.RNA-Seq.R2.A C3N-02003 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-02003.RNA-Seq.R2.T C3N-02003 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c13c469-3b06-4c2e-af20-2cbdcab055ed/180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3493250359 FASTQ NA 9c13c469-3b06-4c2e-af20-2cbdcab055ed storage1 C3N-02005.RNA-Seq.R1.T C3N-02005 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afde1752-f476-45e9-bcac-c37bf88cc5b5/190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4033270746 FASTQ NA afde1752-f476-45e9-bcac-c37bf88cc5b5 storage1 C3N-02005.RNA-Seq.R2.T C3N-02005 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eab3506f-acc0-4135-9683-7d8d8e9a3e14/190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4465342500 FASTQ NA eab3506f-acc0-4135-9683-7d8d8e9a3e14 storage1 +C3N-02010.RNA-Seq.genomic.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c122b48-b685-478a-bbe7-86fdae10feef/9f3000be-394d-4628-8ce2-0d3a569bf2b2.rna_seq.genomic.gdc_realn.bam 7409676949 BAM hg38 5c122b48-b685-478a-bbe7-86fdae10feef storage1 +C3N-02010.RNA-Seq.genomic.T.hg38 C3N-02010 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b1e2ea8-8c2c-453b-bc19-116d83984cc3/04e9f1b7-e17b-487f-85c5-2b4818547da7.rna_seq.genomic.gdc_realn.bam 8945156629 BAM hg38 4b1e2ea8-8c2c-453b-bc19-116d83984cc3 storage1 C3N-02010.RNA-Seq.R1.A C3N-02010 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eeff2902-60e5-404d-9ea1-9d0d23ba346d/190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R1_001.fastq.gz 3427102841 FASTQ NA eeff2902-60e5-404d-9ea1-9d0d23ba346d storage1 C3N-02010.RNA-Seq.R1.T C3N-02010 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23ac9bde-8bfe-45e1-998f-eb3aa64bf690/190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R1_001.fastq.gz 4103338946 FASTQ NA 23ac9bde-8bfe-45e1-998f-eb3aa64bf690 storage1 C3N-02010.RNA-Seq.R2.A C3N-02010 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6b5287d-66f9-4a72-a5d0-130ade6a0a0a/190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R2_001.fastq.gz 3732783418 FASTQ NA f6b5287d-66f9-4a72-a5d0-130ade6a0a0a storage1 @@ -6090,6 +6428,7 @@ C3N-02067.RNA-Seq.R2.A C3N-02067 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-02067.RNA-Seq.R2.T C3N-02067 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04bd9cf5-9ecd-4d35-83ae-50f29cbb564e/180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R2_001.fastq.gz 5032423844 FASTQ NA 04bd9cf5-9ecd-4d35-83ae-50f29cbb564e storage1 C3N-02068.RNA-Seq.R1.T C3N-02068 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a93bde3-82b9-4ea3-8e24-26d896e2e5d7/190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3611242902 FASTQ NA 2a93bde3-82b9-4ea3-8e24-26d896e2e5d7 storage1 C3N-02068.RNA-Seq.R2.T C3N-02068 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f313414c-ca3c-4d29-9bc1-e962ea516a3f/190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3938541574 FASTQ NA f313414c-ca3c-4d29-9bc1-e962ea516a3f storage1 +C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6fca693-451f-4b71-9997-f1e35cdc6d13/87ebcc6c-e46a-44f8-be89-e3362f4308c3.rna_seq.genomic.gdc_realn.bam 10026317862 BAM hg38 a6fca693-451f-4b71-9997-f1e35cdc6d13 storage1 C3N-02069.RNA-Seq.R1.T C3N-02069 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2b0c3e8-eb52-44b4-ae01-f1ca77ec00cd/180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4475908435 FASTQ NA a2b0c3e8-eb52-44b4-ae01-f1ca77ec00cd storage1 C3N-02069.RNA-Seq.R2.T C3N-02069 PDA RNA-Seq tumor 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C3N-02253.RNA-Seq.R2.T C3N-02253 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41124954-da18-4aae-84f8-046f67939d4d/190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R2_001.fastq.gz 3987206525 FASTQ NA 41124954-da18-4aae-84f8-046f67939d4d storage1 C3N-02253.RNA-Seq.R2.T C3N-02253 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/861aa769-44fc-4901-9225-569323863452/20210723_P2_C10_WB7988-plate2_S34_R2_001.fastq.gz 6304294811 FASTQ NA 861aa769-44fc-4901-9225-569323863452 storage1 +C3N-02255.RNA-Seq.chimeric.T.hg38 C3N-02255 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6582de49-0a3c-4dec-bcb3-4691e270db62/24baeb9d-b5bf-4ab6-b499-c78716c9a100.rna_seq.chimeric.gdc_realn.bam 142404202 BAM hg38 6582de49-0a3c-4dec-bcb3-4691e270db62 storage1 C3N-02255.RNA-Seq.R1.T C3N-02255 GBM RNA-Seq tumor 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tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a27f21d-0359-4af1-9224-c31b612241b4/180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R1_001.fastq.gz 3403190252 FASTQ NA 7a27f21d-0359-4af1-9224-c31b612241b4 storage1 C3N-02285.RNA-Seq.R2.A C3N-02285 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20060cbc-b291-43b9-b1a2-179d33db94df/180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4534947376 FASTQ NA 20060cbc-b291-43b9-b1a2-179d33db94df storage1 C3N-02285.RNA-Seq.R2.T C3N-02285 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5915e9f4-006f-4912-b6e2-681270b493df/180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R2_001.fastq.gz 3623342067 FASTQ NA 5915e9f4-006f-4912-b6e2-681270b493df storage1 +C3N-02286.RNA-Seq.R1.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02665bb1-0f40-4959-9017-1d20d7a15ced/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ NA 02665bb1-0f40-4959-9017-1d20d7a15ced storage1 +C3N-02286.RNA-Seq.R2.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bdd1ba-fe88-4d31-b371-bd54b3859722/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ NA 80bdd1ba-fe88-4d31-b371-bd54b3859722 storage1 C3N-02286.WXS.N.hg38 C3N-02286 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4f55a53-fd44-45ee-906c-dc8706ec87b2/ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wxs_gdc_realn.bam 33503551009 BAM hg38 c4f55a53-fd44-45ee-906c-dc8706ec87b2 storage1 C3N-02286.WXS.T.hg38 C3N-02286 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ef99148-c0f0-49c4-a112-d11db3c629f6/4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wxs_gdc_realn.bam 31977769095 BAM hg38 1ef99148-c0f0-49c4-a112-d11db3c629f6 storage1 C3N-02288.RNA-Seq.R1.A C3N-02288 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cbd08c2-d1b5-4b79-bbdd-123cd1403623/190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R1_001.fastq.gz 3836916330 FASTQ NA 6cbd08c2-d1b5-4b79-bbdd-123cd1403623 storage1 @@ -6335,6 +6694,7 @@ C3N-02290.RNA-Seq.R1.A C3N-02290 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-02290.RNA-Seq.R1.T C3N-02290 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9/190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R1_001.fastq.gz 4690579368 FASTQ NA 39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9 storage1 C3N-02290.RNA-Seq.R2.A C3N-02290 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a160126-dc86-454c-836f-0a8062bb21ea/190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R2_001.fastq.gz 4678562004 FASTQ NA 1a160126-dc86-454c-836f-0a8062bb21ea storage1 C3N-02290.RNA-Seq.R2.T C3N-02290 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac88605a-47e9-408e-aca0-7ee694936066/190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R2_001.fastq.gz 4522792261 FASTQ NA ac88605a-47e9-408e-aca0-7ee694936066 storage1 +C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6401b7b9-8871-42bb-ba8b-2bec0a89e359/a1e91af2-8b5d-4fb7-9519-1b17ed5b7d5f.rna_seq.genomic.gdc_realn.bam 9068778845 BAM hg38 6401b7b9-8871-42bb-ba8b-2bec0a89e359 storage1 C3N-02295.RNA-Seq.R1.T C3N-02295 PDA RNA-Seq tumor 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C3N-02572.RNA-Seq.R1.T C3N-02572 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc10b6b0-67c4-4698-8ec0-ded169a99a3d/180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 4040981378 FASTQ NA bc10b6b0-67c4-4698-8ec0-ded169a99a3d storage1 C3N-02572.RNA-Seq.R2.A C3N-02572 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37830f1f-1ff1-41ae-af24-91010de7eb1a/180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R2_001.fastq.gz 3389884363 FASTQ NA 37830f1f-1ff1-41ae-af24-91010de7eb1a storage1 C3N-02572.RNA-Seq.R2.T C3N-02572 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5baffbc9-00eb-43de-9948-317662cc6ed6/180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 4160211180 FASTQ NA 5baffbc9-00eb-43de-9948-317662cc6ed6 storage1 +C3N-02573.RNA-Seq.genomic.T.hg38 C3N-02573 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b33af3a-530e-4cd5-bb9d-020154812791/53286c96-2f8f-40fe-a404-d73607162a70.rna_seq.genomic.gdc_realn.bam 9746350795 BAM hg38 6b33af3a-530e-4cd5-bb9d-020154812791 storage1 C3N-02573.RNA-Seq.R1.T C3N-02573 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55c288e5-b38d-459b-bfef-da66a25b59ec/190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3999602643 FASTQ NA 55c288e5-b38d-459b-bfef-da66a25b59ec storage1 C3N-02573.RNA-Seq.R2.T C3N-02573 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51cd1a61-40ad-4a11-8a9f-59674a76b4ca/190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4446247729 FASTQ NA 51cd1a61-40ad-4a11-8a9f-59674a76b4ca storage1 C3N-02575.RNA-Seq.R1.A C3N-02575 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab65576a-9a88-4d65-9e89-261656233b75/180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R1_001.fastq.gz 3833000070 FASTQ NA ab65576a-9a88-4d65-9e89-261656233b75 storage1 @@ -6488,12 +6849,14 @@ C3N-02577.RNA-Seq.R1.A C3N-02577 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-02577.RNA-Seq.R1.T C3N-02577 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/985fe40f-089d-45d8-a08f-2010ef64767d/190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R1_001.fastq.gz 3394962825 FASTQ NA 985fe40f-089d-45d8-a08f-2010ef64767d storage1 C3N-02577.RNA-Seq.R2.A C3N-02577 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b52a605-7ff2-43f7-92a0-b4bd49e01385/190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R2_001.fastq.gz 5696280574 FASTQ NA 9b52a605-7ff2-43f7-92a0-b4bd49e01385 storage1 C3N-02577.RNA-Seq.R2.T C3N-02577 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60f7a910-a583-4531-9211-1fc3ee5b0509/190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R2_001.fastq.gz 3432400019 FASTQ NA 60f7a910-a583-4531-9211-1fc3ee5b0509 storage1 +C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1eb95990-3581-42f0-bbe2-24d423cd2aac/a60e85e1-a21e-4c1c-89f6-507cdc9bdf58.rna_seq.genomic.gdc_realn.bam 11340434997 BAM hg38 1eb95990-3581-42f0-bbe2-24d423cd2aac storage1 C3N-02579.RNA-Seq.R1.T C3N-02579 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d8af186-ccb3-433d-ad9f-ef605c2874e7/190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R1_001.fastq.gz 5587915144 FASTQ NA 3d8af186-ccb3-433d-ad9f-ef605c2874e7 storage1 C3N-02579.RNA-Seq.R2.T C3N-02579 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4f1a9fc-0ab4-4cde-b748-4ec572df878f/190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R2_001.fastq.gz 6122364074 FASTQ NA f4f1a9fc-0ab4-4cde-b748-4ec572df878f storage1 C3N-02582.RNA-Seq.R1.A C3N-02582 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/542479cd-7439-4759-a586-3e0b172f5dbe/180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R1_001.fastq.gz 3859968597 FASTQ NA 542479cd-7439-4759-a586-3e0b172f5dbe storage1 C3N-02582.RNA-Seq.R1.T C3N-02582 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0cfc01dc-f4ef-4d6d-ae11-648bebc65525/180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 4034976977 FASTQ NA 0cfc01dc-f4ef-4d6d-ae11-648bebc65525 storage1 C3N-02582.RNA-Seq.R2.A C3N-02582 LUAD RNA-Seq tissue_normal 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C3N-02588.RNA-Seq.R1.T C3N-02588 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6b18c65-7d64-413e-8384-ab62d44284eb/180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R1_001.fastq.gz 4528492951 FASTQ NA b6b18c65-7d64-413e-8384-ab62d44284eb storage1 C3N-02588.RNA-Seq.R2.A C3N-02588 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7647a638-17b5-4584-8f13-02dcdb31143b/180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4125134372 FASTQ NA 7647a638-17b5-4584-8f13-02dcdb31143b storage1 C3N-02588.RNA-Seq.R2.T C3N-02588 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d3d4104-07ff-499d-b7c5-c67f354d8c3c/180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R2_001.fastq.gz 4794829253 FASTQ NA 3d3d4104-07ff-499d-b7c5-c67f354d8c3c storage1 +C3N-02589.RNA-Seq.genomic.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39604754-f3a4-46a6-901c-1b2d667ad74a/CPT0187630002.WholeExome.RP-1303.bam 30121240731 BAM hg19 39604754-f3a4-46a6-901c-1b2d667ad74a storage1 @@ -6520,6 +6886,7 @@ C3N-02590.WXS.T C3N-02590 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Prim C3N-02591.WXS.N C3N-02591 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f0f0dc2-b00d-4440-ba17-47c28396d9eb/CPT0162750002.WholeExome.RP-1303.bam 25610717920 BAM hg19 6f0f0dc2-b00d-4440-ba17-47c28396d9eb storage1 C3N-02591.WXS.N.hg38 C3N-02591 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ac0e90d-c37c-4044-aa66-74caed82b248/4968424c-2b02-4d69-92ca-6216433228ac_wxs_gdc_realn.bam 35122427782 BAM hg38 2ac0e90d-c37c-4044-aa66-74caed82b248 storage1 C3N-02591.WXS.T C3N-02591 PDA WXS tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ec7b054-6c3b-4ec8-b5ef-a6cb0c12db87/190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R2_001.fastq.gz 4592710542 FASTQ NA 2ec7b054-6c3b-4ec8-b5ef-a6cb0c12db87 storage1 C3N-02594.RNA-Seq.R1.A C3N-02594 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d612a4f-4fa0-4ac6-ac4a-1dc01ae3b6e1/220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3380538059 FASTQ NA 3d612a4f-4fa0-4ac6-ac4a-1dc01ae3b6e1 storage1 @@ -6539,6 +6906,8 @@ C3N-02598.RNA-Seq.R1.T C3N-02598 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3N-02598.RNA-Seq.R1.T C3N-02598 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed069b3a-4f43-4cf7-9618-7146440a4d5a/190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R1_001.fastq.gz 3501334415 FASTQ NA ed069b3a-4f43-4cf7-9618-7146440a4d5a storage1 C3N-02598.RNA-Seq.R2.T C3N-02598 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44bcb81f-cda0-42cb-9978-6653067da8ac/20210806_P4_3_WB7988-plate4_S28_R2_001.fastq.gz 4715268363 FASTQ NA 44bcb81f-cda0-42cb-9978-6653067da8ac storage1 C3N-02598.RNA-Seq.R2.T C3N-02598 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70c7569f-ba60-4436-b121-8e2c7594613c/190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R2_001.fastq.gz 4042694872 FASTQ NA 70c7569f-ba60-4436-b121-8e2c7594613c storage1 +C3N-02599.RNA-Seq.R1.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48cfa054-e4e7-4707-8f4f-1464920cd330/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ NA 48cfa054-e4e7-4707-8f4f-1464920cd330 storage1 +C3N-02599.RNA-Seq.R2.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f34ce994-d55e-49cb-bb17-93e3a4874810/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ NA f34ce994-d55e-49cb-bb17-93e3a4874810 storage1 C3N-02599.WXS.N.hg38 C3N-02599 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5aab09ad-6c94-42a4-bcc2-7ee916573a28/834e776f-c515-46ba-b94e-ae7afe7663ea_wxs_gdc_realn.bam 37230237735 BAM hg38 5aab09ad-6c94-42a4-bcc2-7ee916573a28 storage1 C3N-02599.WXS.T.hg38 C3N-02599 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d643f49-1997-472d-817d-f06236fda307/2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wxs_gdc_realn.bam 28203970919 BAM hg38 9d643f49-1997-472d-817d-f06236fda307 storage1 C3N-02631.RNA-Seq.R1.T C3N-02631 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64680036-719e-49bf-a651-840cc7c87ea7/20210729_P3_B8_WB7988-Plate3_S20_R1_001.fastq.gz 4642136949 FASTQ NA 64680036-719e-49bf-a651-840cc7c87ea7 storage1 @@ -6577,10 +6946,16 @@ C3N-02678.RNA-Seq.R1.T C3N-02678 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3N-02678.RNA-Seq.R1.T C3N-02678 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c83686a4-c3bf-4237-ad36-cc4e3a437299/190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R1_001.fastq.gz 3785854007 FASTQ NA c83686a4-c3bf-4237-ad36-cc4e3a437299 storage1 C3N-02678.RNA-Seq.R2.T C3N-02678 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12b57388-d7fd-4fa5-962f-4c95af38f9a8/190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R2_001.fastq.gz 4391740200 FASTQ NA 12b57388-d7fd-4fa5-962f-4c95af38f9a8 storage1 C3N-02678.RNA-Seq.R2.T C3N-02678 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/729d183b-67fc-4822-b28f-cdc7728992cd/20210729_P3_G3_WB7988-Plate3_S75_R2_001.fastq.gz 6912505116 FASTQ NA 729d183b-67fc-4822-b28f-cdc7728992cd storage1 +C3N-02681.RNA-Seq.R1.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9a4c580-e93e-4331-bcd2-26bd9f24d024/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ NA a9a4c580-e93e-4331-bcd2-26bd9f24d024 storage1 +C3N-02681.RNA-Seq.R2.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17f81101-60cd-4f3f-905c-776206e75ed1/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ NA 17f81101-60cd-4f3f-905c-776206e75ed1 storage1 C3N-02681.WXS.N.hg38 C3N-02681 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dee4a31-a455-4094-9bca-8c5728420d08/64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wxs_gdc_realn.bam 30409997212 BAM hg38 1dee4a31-a455-4094-9bca-8c5728420d08 storage1 C3N-02681.WXS.T.hg38 C3N-02681 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ea35233-7d7a-4a6a-ad94-c9be14124207/f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wxs_gdc_realn.bam 30168751979 BAM hg38 6ea35233-7d7a-4a6a-ad94-c9be14124207 storage1 +C3N-02682.RNA-Seq.R1.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdabb589-3cd2-4b0d-9710-b951fc336806/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ NA bdabb589-3cd2-4b0d-9710-b951fc336806 storage1 +C3N-02682.RNA-Seq.R2.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c36b01fb-a764-4899-8eaa-7df412ad8c7b/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ NA c36b01fb-a764-4899-8eaa-7df412ad8c7b storage1 C3N-02682.WXS.N.hg38 C3N-02682 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a53e18d-9895-42a2-9ec6-31f7bb5fcb77/5854cf9a-665a-48c0-a765-43727b62ae6d_wxs_gdc_realn.bam 44410389015 BAM hg38 8a53e18d-9895-42a2-9ec6-31f7bb5fcb77 storage1 C3N-02682.WXS.T.hg38 C3N-02682 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/307e94af-7463-4cec-a9e3-8f89ec1713a2/a96f6a16-6c6d-446b-8545-571072fd312a_wxs_gdc_realn.bam 41646001362 BAM hg38 307e94af-7463-4cec-a9e3-8f89ec1713a2 storage1 +C3N-02683.RNA-Seq.R1.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f88b71c6-807d-45d8-bb45-d6f1adb722e4/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ NA f88b71c6-807d-45d8-bb45-d6f1adb722e4 storage1 +C3N-02683.RNA-Seq.R2.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86f73dc2-f0b2-4857-9873-09673863a96a/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ NA 86f73dc2-f0b2-4857-9873-09673863a96a storage1 C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0263ae2-aa97-470b-9b51-bb94d28b6edc/63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM hg38 d0263ae2-aa97-470b-9b51-bb94d28b6edc storage1 C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69b5d037-e728-49dc-8fa6-ff955e5ace97/17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM hg38 69b5d037-e728-49dc-8fa6-ff955e5ace97 storage1 C3N-02684.RNA-Seq.genomic.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd799b7e-354f-40ab-a95a-eb0e62225112/a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.genomic.gdc_realn.bam 8285546489 BAM hg38 cd799b7e-354f-40ab-a95a-eb0e62225112 storage1 @@ -6622,6 +6997,7 @@ C3N-02696.WXS.N.BIOTEXT_kRr8Dn5.hg38 C3N-02696 PDA WXS blood_normal /storage1/fs C3N-02696.WXS.T.BIOTEXT_1wGrZKq.hg38 C3N-02696 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea05ae7a-d363-4851-88ee-4711b46ddecf/3fb95744-5c41-4471-9df3-546ee2b8e71e_wxs_gdc_realn.bam 36400384902 BAM hg38 ea05ae7a-d363-4851-88ee-4711b46ddecf storage1 C3N-02696.WXS.T.BIOTEXT_YEyvLOY.hg38 C3N-02696 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e19f85e5-6493-4350-8805-594adbee928c/5c1e57f9-b763-4096-8efe-ad4938f28f28_wxs_gdc_realn.bam 37859899802 BAM hg38 e19f85e5-6493-4350-8805-594adbee928c storage1 C3N-02696.WXS.T.BIOTEXT_Z6zVMPg.hg38 C3N-02696 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/efcfaeab-730f-4a73-abc6-997b95dceaed/4550480f-f067-49e8-b363-a6ef86e7f3a0_wxs_gdc_realn.bam 33713968747 BAM hg38 efcfaeab-730f-4a73-abc6-997b95dceaed storage1 +C3N-02697.RNA-Seq.genomic.T.hg38 C3N-02697 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f72aaf6f-5bc5-4863-b29e-b6b0f26ae2c8/c824d73e-8c29-435c-a547-ae8cd35b853b.rna_seq.genomic.gdc_realn.bam 9108640644 BAM hg38 f72aaf6f-5bc5-4863-b29e-b6b0f26ae2c8 storage1 C3N-02697.RNA-Seq.R1.T C3N-02697 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3af97fc0-6065-4f6a-8721-134c0800f159/190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 4039843803 FASTQ NA 3af97fc0-6065-4f6a-8721-134c0800f159 storage1 C3N-02697.RNA-Seq.R2.T C3N-02697 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2001364-38f0-4745-963b-acefe25a8f22/190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4601498429 FASTQ NA d2001364-38f0-4745-963b-acefe25a8f22 storage1 C3N-02700.RNA-Seq.R1.T C3N-02700 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/319a077c-3031-4fbe-9958-4577b5919304/190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4062433781 FASTQ NA 319a077c-3031-4fbe-9958-4577b5919304 storage1 @@ -6720,26 +7096,44 @@ C3N-02765.WXS.N.BIOTEXT_kR2wGWY.hg38 C3N-02765 PDA WXS blood_normal /storage1/fs C3N-02765.WXS.T.BIOTEXT_rk2EBO4.hg38 C3N-02765 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bdd173e-8229-40d7-80f9-2dd4b7d63b71/b6d39075-48b8-4eff-8838-f4cf2976885d_wxs_gdc_realn.bam 35954402673 BAM hg38 4bdd173e-8229-40d7-80f9-2dd4b7d63b71 storage1 C3N-02765.WXS.T.BIOTEXT_v2QYRV0.hg38 C3N-02765 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48c289b8-9604-45e2-a4f8-117b7e9817b0/46f39431-79cf-4335-beda-d2eb94b2fd97_wxs_gdc_realn.bam 51745092746 BAM hg38 48c289b8-9604-45e2-a4f8-117b7e9817b0 storage1 C3N-02765.WXS.T.BIOTEXT_wp0E2W1.hg38 C3N-02765 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/affe7493-8ec2-48f2-8d77-6684ce189f20/3aa9c329-5382-4d4c-86a2-1f313124b4bb_wxs_gdc_realn.bam 37976633564 BAM hg38 affe7493-8ec2-48f2-8d77-6684ce189f20 storage1 +C3N-02768.RNA-Seq.genomic.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34d73f70-ac8d-431f-9e1b-bb46e453876e/18c9dbc8-786e-4eb9-8078-57b216961468.rna_seq.genomic.gdc_realn.bam 10140818325 BAM hg38 34d73f70-ac8d-431f-9e1b-bb46e453876e storage1 +C3N-02768.RNA-Seq.genomic.T.hg38 C3N-02768 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98ffbfed-757f-43c4-b7a0-65b86ee2efa6/4b7eacf2-3056-4ea7-a0e0-75125d3d2f18.rna_seq.genomic.gdc_realn.bam 8513440830 BAM hg38 98ffbfed-757f-43c4-b7a0-65b86ee2efa6 storage1 C3N-02768.RNA-Seq.R1.A C3N-02768 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e176a56-9f2e-48a9-a58d-e421acfdaa26/190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R1_001.fastq.gz 4770279436 FASTQ NA 4e176a56-9f2e-48a9-a58d-e421acfdaa26 storage1 C3N-02768.RNA-Seq.R1.T C3N-02768 PDA RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4865666f-0144-4dc2-8d12-0ea2061e80e7/7abd92d0-2c6c-4fe7-a411-32349d22d560_wxs_gdc_realn.bam 33937652781 BAM hg38 4865666f-0144-4dc2-8d12-0ea2061e80e7 storage1 C3N-02789.RNA-Seq.R1.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4353b2fe-1b21-4707-b307-e3d8cadc9c4e/190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ NA 4353b2fe-1b21-4707-b307-e3d8cadc9c4e storage1 @@ -6811,10 +7205,13 @@ C3N-02930.WXS.N.BIOTEXT_kR2X6vJ.hg38 C3N-02930 PDA WXS blood_normal /storage1/fs C3N-02930.WXS.T.BIOTEXT_316EXAQ.hg38 C3N-02930 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2537afb-b18b-41c5-b14f-3e0328300b01/196d2508-1e9a-4066-852b-db2b6d675026_wxs_gdc_realn.bam 33641984581 BAM hg38 b2537afb-b18b-41c5-b14f-3e0328300b01 storage1 C3N-02930.WXS.T.BIOTEXT_4x6V3B6.hg38 C3N-02930 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b550ac4-314b-48d9-b6c5-529373e75244/0f5cd2c3-cc7e-46aa-b49f-306ce900c2e6_wxs_gdc_realn.bam 36671323296 BAM hg38 0b550ac4-314b-48d9-b6c5-529373e75244 storage1 C3N-02930.WXS.T.BIOTEXT_5y7V4DR.hg38 C3N-02930 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50ecb347-19a6-4724-9177-fdaa41c061a6/00a57e9e-5c8e-47bc-a71d-d220116d32d0_wxs_gdc_realn.bam 30663764810 BAM hg38 50ecb347-19a6-4724-9177-fdaa41c061a6 storage1 +C3N-02939.RNA-Seq.genomic.T.hg38 C3N-02939 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2be5524-0785-48f4-a9d4-2a335e616a6d/4c71025e-e2dc-4c32-b97f-24e33f09fcf0.rna_seq.genomic.gdc_realn.bam 8343601462 BAM hg38 b2be5524-0785-48f4-a9d4-2a335e616a6d storage1 C3N-02939.RNA-Seq.R1.T C3N-02939 PDA RNA-Seq tumor 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C3N-02996.WXS.T.BIOTEXT_Z6zYAR8.hg38 C3N-02996 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed5bb7bd-bedf-4585-9849-16526aae512a/6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM hg38 ed5bb7bd-bedf-4585-9849-16526aae512a storage1 +C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d915f15b-1710-4f9d-9a5e-5e818f0dae04/06302bba-022f-41a2-8011-8192560a185e.rna_seq.genomic.gdc_realn.bam 11075594293 BAM hg38 d915f15b-1710-4f9d-9a5e-5e818f0dae04 storage1 C3N-02997.RNA-Seq.R1.T C3N-02997 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7462092-1df0-412e-b272-60f9e0c9799a/190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R1_001.fastq.gz 3834475097 FASTQ NA d7462092-1df0-412e-b272-60f9e0c9799a storage1 C3N-02997.RNA-Seq.R2.T C3N-02997 PDA RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac/190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R1_001.fastq.gz 3900170966 FASTQ NA 1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac storage1 C3N-03005.RNA-Seq.R1.T C3N-03005 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d47901f-2b7d-4329-9061-b3fda249ebde/20210729_P3_G4_WB7988-Plate3_S76_R1_001.fastq.gz 5615640760 FASTQ NA 2d47901f-2b7d-4329-9061-b3fda249ebde storage1 C3N-03005.RNA-Seq.R2.T C3N-03005 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/660d46c1-49bb-4bed-9382-5279c22c13f8/190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R2_001.fastq.gz 4267444972 FASTQ NA 660d46c1-49bb-4bed-9382-5279c22c13f8 storage1 C3N-03005.RNA-Seq.R2.T C3N-03005 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e97b3e53-a357-4ca5-ae25-325026a707e6/20210729_P3_G4_WB7988-Plate3_S76_R2_001.fastq.gz 5783374916 FASTQ NA e97b3e53-a357-4ca5-ae25-325026a707e6 storage1 +C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a388878-e3c0-4a28-86c3-b990cedd03ee/5ba34fb7-e0ef-4577-92e5-69487d35a5ee.rna_seq.genomic.gdc_realn.bam 9529670763 BAM hg38 6a388878-e3c0-4a28-86c3-b990cedd03ee storage1 C3N-03006.RNA-Seq.R1.T C3N-03006 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/056f7b6d-efb7-4819-9688-cda521c7f33a/190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R1_001.fastq.gz 4371309904 FASTQ NA 056f7b6d-efb7-4819-9688-cda521c7f33a storage1 C3N-03006.RNA-Seq.R2.T C3N-03006 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0543f34-912b-4e61-b5f9-4edb67cd470b/190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R2_001.fastq.gz 4977189999 FASTQ NA f0543f34-912b-4e61-b5f9-4edb67cd470b storage1 +C3N-03007.RNA-Seq.genomic.T.hg38 C3N-03007 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d5ffe91-b901-46fc-87ca-9e6d230544d6/31d75797-d277-4639-8246-fd72b2e43e0d.rna_seq.genomic.gdc_realn.bam 7526552061 BAM hg38 4d5ffe91-b901-46fc-87ca-9e6d230544d6 storage1 C3N-03007.RNA-Seq.R1.T C3N-03007 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38fb3cc4-43a4-4536-8370-94a0ab4538cf/190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R1_001.fastq.gz 3614116156 FASTQ NA 38fb3cc4-43a4-4536-8370-94a0ab4538cf storage1 C3N-03007.RNA-Seq.R2.T C3N-03007 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/660046b6-72a3-4f00-9bec-bbc666a277fe/190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R2_001.fastq.gz 3904736055 FASTQ NA 660046b6-72a3-4f00-9bec-bbc666a277fe storage1 C3N-03008.RNA-Seq.R1.T C3N-03008 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e8ce9ca-95c9-4acc-81e1-22122cb29d9e/190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R1_001.fastq.gz 3587409141 FASTQ NA 0e8ce9ca-95c9-4acc-81e1-22122cb29d9e storage1 @@ -6924,6 +7331,8 @@ C3N-03021.RNA-Seq.R1.A C3N-03021 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-03021.RNA-Seq.R1.T C3N-03021 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fd114d3-7cba-4e69-a64e-21f71e0e3be6/190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4423006156 FASTQ NA 8fd114d3-7cba-4e69-a64e-21f71e0e3be6 storage1 C3N-03021.RNA-Seq.R2.A C3N-03021 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5f94a34-6065-4e26-b24c-4786bdabc87d/190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R2_001.fastq.gz 4999382702 FASTQ NA f5f94a34-6065-4e26-b24c-4786bdabc87d storage1 C3N-03021.RNA-Seq.R2.T C3N-03021 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27aa231e-944d-41fb-9d71-18a2d029842a/190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ NA 27aa231e-944d-41fb-9d71-18a2d029842a storage1 +C3N-03025.RNA-Seq.R1.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a12152f-6b09-4e4b-87a2-deac64ea83a1/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ NA 6a12152f-6b09-4e4b-87a2-deac64ea83a1 storage1 +C3N-03025.RNA-Seq.R2.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ff9e556-fa20-4d91-8dc9-b02275783e96/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ NA 7ff9e556-fa20-4d91-8dc9-b02275783e96 storage1 C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4/e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM hg38 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 storage1 C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/325ed822-683e-457a-9687-2ade3fcd0bfe/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM hg38 325ed822-683e-457a-9687-2ade3fcd0bfe storage1 C3N-03026.RNA-Seq.genomic.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6ecf701-e71d-422a-ad03-e1c1b6795206/104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.genomic.gdc_realn.bam 9699464204 BAM hg38 c6ecf701-e71d-422a-ad03-e1c1b6795206 storage1 @@ -6949,6 +7358,7 @@ C3N-03038.RNA-Seq.R1.A C3N-03038 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-03038.RNA-Seq.R1.T C3N-03038 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4239c264-cf13-41ea-b256-fd8c66372843/190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R1_001.fastq.gz 4244552340 FASTQ NA 4239c264-cf13-41ea-b256-fd8c66372843 storage1 C3N-03038.RNA-Seq.R2.A C3N-03038 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e764d0bf-3f54-493c-b1d7-96ed53d5cf56/190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R2_001.fastq.gz 5074283143 FASTQ NA e764d0bf-3f54-493c-b1d7-96ed53d5cf56 storage1 C3N-03038.RNA-Seq.R2.T C3N-03038 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59826fe8-e4f4-4f9a-9784-a5fccc914fe1/190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R2_001.fastq.gz 4650188230 FASTQ NA 59826fe8-e4f4-4f9a-9784-a5fccc914fe1 storage1 +C3N-03039.RNA-Seq.genomic.T.hg38 C3N-03039 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8118601-b2df-4f46-be4d-b842191e25a8/ac2f73d9-a993-4b3f-8d55-847c660bc0b3.rna_seq.genomic.gdc_realn.bam 7450950212 BAM hg38 d8118601-b2df-4f46-be4d-b842191e25a8 storage1 C3N-03039.RNA-Seq.R1.T C3N-03039 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef84b358-470b-4af0-9dce-4a1dcb142ce6/190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R1_001.fastq.gz 3034627423 FASTQ NA ef84b358-470b-4af0-9dce-4a1dcb142ce6 storage1 C3N-03039.RNA-Seq.R2.T C3N-03039 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e128176e-a4ee-41f5-92a0-222c59ba9e61/190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R2_001.fastq.gz 3375760731 FASTQ NA e128176e-a4ee-41f5-92a0-222c59ba9e61 storage1 C3N-03042.RNA-Seq.R1.T C3N-03042 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/354207a4-a586-4047-844e-4f8e1ac91c8f/20210723_P2_D12_WB7988-plate2_S48_R1_001.fastq.gz 5002596989 FASTQ NA 354207a4-a586-4047-844e-4f8e1ac91c8f storage1 @@ -6979,18 +7389,23 @@ C3N-03054.RNA-Seq.R2.A C3N-03054 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-03054.RNA-Seq.R2.T C3N-03054 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c788677-7c36-4449-9689-7fda08e3cdb9/190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 4347757368 FASTQ NA 6c788677-7c36-4449-9689-7fda08e3cdb9 storage1 C3N-03057.RNA-Seq.R1.T C3N-03057 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62175043-4989-4b17-b924-984a6039dc5a/190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R1_001.fastq.gz 4117551387 FASTQ NA 62175043-4989-4b17-b924-984a6039dc5a storage1 C3N-03057.RNA-Seq.R2.T C3N-03057 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/167417a5-fae3-4559-93f0-b79a71b966ed/190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R2_001.fastq.gz 4572043529 FASTQ NA 167417a5-fae3-4559-93f0-b79a71b966ed storage1 +C3N-03061.RNA-Seq.genomic.T.hg38 C3N-03061 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef813116-5a26-4bd4-b187-5010c9e23aae/1dc1d200-89d6-4edf-ae9e-1f6ce9d27e9c.rna_seq.genomic.gdc_realn.bam 8823319529 BAM hg38 ef813116-5a26-4bd4-b187-5010c9e23aae storage1 C3N-03061.RNA-Seq.R1.T C3N-03061 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e04a667-9083-4d39-9933-57dab9a65fd0/190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4295719121 FASTQ NA 5e04a667-9083-4d39-9933-57dab9a65fd0 storage1 C3N-03061.RNA-Seq.R2.T C3N-03061 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa4e1900-2a03-4fa4-a3ad-64e9640d8160/190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4700486391 FASTQ NA aa4e1900-2a03-4fa4-a3ad-64e9640d8160 storage1 C3N-03063.RNA-Seq.R1.A C3N-03063 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b34eac8c-0f66-4a29-adaa-93b00a34356f/190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R1_001.fastq.gz 4806652605 FASTQ NA b34eac8c-0f66-4a29-adaa-93b00a34356f storage1 C3N-03063.RNA-Seq.R1.T C3N-03063 LUAD RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/746e2831-9ff1-4c5b-b283-40da44698506/97b0033c-f956-4e9b-90a9-4e009e2fb3c2.rna_seq.genomic.gdc_realn.bam 8408796070 BAM hg38 746e2831-9ff1-4c5b-b283-40da44698506 storage1 +C3N-03069.RNA-Seq.genomic.T.hg38 C3N-03069 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31ebc1dd-60a0-4433-ac3a-8f07bd67054f/64afb85d-f55f-4b94-91c2-bafe60ad2317.rna_seq.genomic.gdc_realn.bam 7172134341 BAM hg38 31ebc1dd-60a0-4433-ac3a-8f07bd67054f storage1 C3N-03069.RNA-Seq.R1.A C3N-03069 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8194392-ef54-460f-8e23-380d7510dba5/190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R1_001.fastq.gz 3605633432 FASTQ NA e8194392-ef54-460f-8e23-380d7510dba5 storage1 C3N-03069.RNA-Seq.R1.T C3N-03069 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96d96f8a-5cee-44ff-a47f-c9ea645e95c9/190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R1_001.fastq.gz 3608441806 FASTQ NA 96d96f8a-5cee-44ff-a47f-c9ea645e95c9 storage1 C3N-03069.RNA-Seq.R2.A C3N-03069 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43e21637-48dd-473a-8f19-70708526f37d/190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R2_001.fastq.gz 4142580685 FASTQ NA 43e21637-48dd-473a-8f19-70708526f37d storage1 C3N-03069.RNA-Seq.R2.T C3N-03069 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d8a21ab-6059-4d0c-ad2e-db57b6574401/190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R2_001.fastq.gz 3702202882 FASTQ NA 6d8a21ab-6059-4d0c-ad2e-db57b6574401 storage1 +C3N-03070.RNA-Seq.chimeric.T.hg38 C3N-03070 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d502994e-7c78-47c4-984e-3f341bc90917/b1caea76-fffa-42a4-8147-c0135dc5368e.rna_seq.chimeric.gdc_realn.bam 64832516 BAM hg38 d502994e-7c78-47c4-984e-3f341bc90917 storage1 C3N-03070.RNA-Seq.R1.T C3N-03070 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66d938ca-8d17-45b9-834d-a289ed685049/190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R1_001.fastq.gz 4511670372 FASTQ NA 66d938ca-8d17-45b9-834d-a289ed685049 storage1 C3N-03070.RNA-Seq.R2.T C3N-03070 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff/190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R2_001.fastq.gz 4305537656 FASTQ NA 6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff storage1 +C3N-03070.RNA-Seq.transcriptome.T.hg38 C3N-03070 GBM RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/054f03c6-579f-4f81-9e49-70c7e4267788/190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4889574051 FASTQ NA 054f03c6-579f-4f81-9e49-70c7e4267788 storage1 C3N-03190.RNA-Seq.R2.T C3N-03190 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51bf57de-5b73-41a0-8d32-ff476c13a1e8/190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 5017397148 FASTQ NA 51bf57de-5b73-41a0-8d32-ff476c13a1e8 storage1 C3N-03202.RNA-Seq.R1.A C3N-03202 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bee3267-ddf6-4203-8344-ff0ba4dfda0a/190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R1_001.fastq.gz 3506657711 FASTQ NA 8bee3267-ddf6-4203-8344-ff0ba4dfda0a storage1 @@ -7055,6 +7488,7 @@ C3N-03210.RNA-Seq.R1.A C3N-03210 LUAD RNA-Seq tissue_normal /storage1/fs1/dingla C3N-03210.RNA-Seq.R1.T C3N-03210 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3fcb1e2-deb3-4705-898a-b803f70309ac/190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R1_001.fastq.gz 4455352989 FASTQ NA b3fcb1e2-deb3-4705-898a-b803f70309ac storage1 C3N-03210.RNA-Seq.R2.A C3N-03210 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a851467b-e5c4-4a41-8462-5f9567e7a3e4/190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R2_001.fastq.gz 4985608615 FASTQ NA a851467b-e5c4-4a41-8462-5f9567e7a3e4 storage1 C3N-03210.RNA-Seq.R2.T C3N-03210 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a02fcc2e-4533-47e9-8c30-831d8aba8439/190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R2_001.fastq.gz 5116449263 FASTQ NA a02fcc2e-4533-47e9-8c30-831d8aba8439 storage1 +C3N-03211.RNA-Seq.genomic.T.hg38 C3N-03211 PDA RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/442830a1-16e0-4a52-9c30-c8b9e06e4756/190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R1_001.fastq.gz 5029004974 FASTQ NA 442830a1-16e0-4a52-9c30-c8b9e06e4756 storage1 @@ -7105,10 +7539,13 @@ C3N-03425.RNA-Seq.R1.A C3N-03425 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-03425.RNA-Seq.R1.T C3N-03425 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72ed9436-a381-4055-b785-68a9352ab86e/190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R1_001.fastq.gz 3551251612 FASTQ NA 72ed9436-a381-4055-b785-68a9352ab86e storage1 C3N-03425.RNA-Seq.R2.A C3N-03425 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ca827ca-cee9-4417-b20c-8e537eade377/190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R2_001.fastq.gz 4257501212 FASTQ NA 3ca827ca-cee9-4417-b20c-8e537eade377 storage1 C3N-03425.RNA-Seq.R2.T C3N-03425 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b43f757a-58b7-4b23-9f86-d485ba357aa1/190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R2_001.fastq.gz 3786048537 FASTQ NA b43f757a-58b7-4b23-9f86-d485ba357aa1 storage1 +C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08b74ff4-9e65-4e99-b480-c85d929f9ee8/8930739b-4381-48ee-aaad-1229ea213c09.rna_seq.genomic.gdc_realn.bam 7908867436 BAM hg38 08b74ff4-9e65-4e99-b480-c85d929f9ee8 storage1 C3N-03426.RNA-Seq.R1.T C3N-03426 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10689c80-11c6-4f26-b1bc-4bc6d9028ab8/190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 2605705670 FASTQ NA 10689c80-11c6-4f26-b1bc-4bc6d9028ab8 storage1 C3N-03426.RNA-Seq.R2.T C3N-03426 PDA RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/deab0ab5-9f7c-44e6-85ee-ac6a9a7cab11/190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R2_001.fastq.gz 3974453516 FASTQ NA deab0ab5-9f7c-44e6-85ee-ac6a9a7cab11 storage1 +C3N-03430.RNA-Seq.genomic.T.hg38 C3N-03430 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8691e3c3-7130-44ce-9511-14147cb86e7c/efeec49a-bb01-4ec1-8b95-c0cb1b159de7.rna_seq.genomic.gdc_realn.bam 6630366085 BAM hg38 8691e3c3-7130-44ce-9511-14147cb86e7c storage1 C3N-03430.RNA-Seq.R1.T C3N-03430 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48bd5073-acb2-4ba5-8c6c-e0bea42b7012/190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 2397546168 FASTQ NA 48bd5073-acb2-4ba5-8c6c-e0bea42b7012 storage1 C3N-03430.RNA-Seq.R2.T C3N-03430 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fe1f59a-76c6-42f0-b83e-8eeb928a0851/190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 2370816951 FASTQ NA 8fe1f59a-76c6-42f0-b83e-8eeb928a0851 storage1 C3N-03433.RNA-Seq.R1.T C3N-03433 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bceb11f-7a0f-404d-82bd-8807c6e2996d/20210723_P2_E12_WB7988-plate2_S60_R1_001.fastq.gz 3721069148 FASTQ NA 3bceb11f-7a0f-404d-82bd-8807c6e2996d storage1 @@ -7117,8 +7554,11 @@ C3N-03433.RNA-Seq.R2.T C3N-03433 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-03433.RNA-Seq.R2.T C3N-03433 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7ef5f90-8ea4-4ba3-822c-7c3c6cd85f0c/20210723_P2_E12_WB7988-plate2_S60_R2_001.fastq.gz 3972555233 FASTQ NA d7ef5f90-8ea4-4ba3-822c-7c3c6cd85f0c storage1 C3N-03438.RNA-Seq.R1.T C3N-03438 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a81bd3fe-db96-4afd-9bab-fc3ac0b8ba30/20210729_P3_H5_WB7988-Plate3_S89_R1_001.fastq.gz 3607910603 FASTQ NA a81bd3fe-db96-4afd-9bab-fc3ac0b8ba30 storage1 C3N-03438.RNA-Seq.R2.T C3N-03438 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acbe8b30-2dff-4b1d-a4c9-8d8c2a66af6c/20210729_P3_H5_WB7988-Plate3_S89_R2_001.fastq.gz 3739843122 FASTQ NA acbe8b30-2dff-4b1d-a4c9-8d8c2a66af6c storage1 +C3N-03439.RNA-Seq.genomic.T.hg38 C3N-03439 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/653a9480-f69d-4fcb-9686-c081d42e9726/363508d5-a12a-4cca-8d7a-27c2b621e446.rna_seq.genomic.gdc_realn.bam 7902532067 BAM hg38 653a9480-f69d-4fcb-9686-c081d42e9726 storage1 C3N-03439.RNA-Seq.R1.T C3N-03439 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/733cff74-fce8-4ca0-8419-345f3b8f9e32/190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3651426360 FASTQ NA 733cff74-fce8-4ca0-8419-345f3b8f9e32 storage1 C3N-03439.RNA-Seq.R2.T C3N-03439 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8dba4a07-6c9f-435d-a734-c00d9700b809/190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4218278823 FASTQ NA 8dba4a07-6c9f-435d-a734-c00d9700b809 storage1 +C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/367330ed-aace-427a-bad9-ffe8ed224f6c/d257e23c-e850-41ab-a8a6-19af4ec51ef8.rna_seq.genomic.gdc_realn.bam 6121338339 BAM hg38 367330ed-aace-427a-bad9-ffe8ed224f6c storage1 +C3N-03440.RNA-Seq.genomic.T.hg38 C3N-03440 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8cb611b-a493-42b7-8be9-5d38a20ccc35/7d9277eb-45b2-40ac-81ac-7b788020952d.rna_seq.genomic.gdc_realn.bam 9809272543 BAM hg38 b8cb611b-a493-42b7-8be9-5d38a20ccc35 storage1 C3N-03440.RNA-Seq.R1.A C3N-03440 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f74f07bc-dcde-4f6e-a8e6-97dccda7aaaa/190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R1_001.fastq.gz 2696677218 FASTQ NA f74f07bc-dcde-4f6e-a8e6-97dccda7aaaa storage1 C3N-03440.RNA-Seq.R1.T C3N-03440 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ad2b663-f29f-4a07-a7a9-f8875933d4c6/190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 4462547960 FASTQ NA 4ad2b663-f29f-4a07-a7a9-f8875933d4c6 storage1 C3N-03440.RNA-Seq.R2.A C3N-03440 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b27f03b-37e8-4cd4-bb29-6f9dd2f88a49/190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R2_001.fastq.gz 2942208621 FASTQ NA 4b27f03b-37e8-4cd4-bb29-6f9dd2f88a49 storage1 @@ -7134,8 +7574,12 @@ C3N-03446.RNA-Seq.R2.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab C3N-03446.RNA-Seq.R2.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c66f195-9484-4900-9338-d02c9392ee59/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ NA 2c66f195-9484-4900-9338-d02c9392ee59 storage1 C3N-03446.WXS.A C3N-03446 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af/CPT0404840014.WholeExome.RP-1303.bam 22291412082 BAM hg19 faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af storage1 C3N-03446.WXS.A.hg38 C3N-03446 GBM WXS tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6bc6c3bf-8a28-46ab-9f0c-188e00dc39b7/2ffb059e-abc1-48e4-8d8f-de903f6cabe3_wxs_gdc_realn.bam 31302407798 BAM hg38 6bc6c3bf-8a28-46ab-9f0c-188e00dc39b7 storage1 +C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3338a3d1-7dfb-47eb-a5f9-d95dce211972/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ NA 3338a3d1-7dfb-47eb-a5f9-d95dce211972 storage1 +C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 storage1 C3N-03448.WXS.N.hg38 C3N-03448 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5110845-d1e0-40ec-bb1f-4a579825fd3a/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wxs_gdc_realn.bam 36135835999 BAM hg38 d5110845-d1e0-40ec-bb1f-4a579825fd3a storage1 C3N-03448.WXS.T.hg38 C3N-03448 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe33cf3-286e-4018-b4a5-0646edd91277/88b92c30-d2a1-4082-8f8a-74b0c810e12c_wxs_gdc_realn.bam 35505337871 BAM hg38 fbe33cf3-286e-4018-b4a5-0646edd91277 storage1 +C3N-03449.RNA-Seq.R1.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8df9e03-10b6-41a3-972f-b6038ca02881/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ NA d8df9e03-10b6-41a3-972f-b6038ca02881 storage1 +C3N-03449.RNA-Seq.R2.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/289921b1-b467-487e-ad93-095bdb3834ce/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ NA 289921b1-b467-487e-ad93-095bdb3834ce storage1 C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9cc9f57-6994-4632-99c3-b7b44deb2f42/42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM hg38 e9cc9f57-6994-4632-99c3-b7b44deb2f42 storage1 C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c86b4b-863d-404c-a883-76d1abac071c/95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM hg38 b2c86b4b-863d-404c-a883-76d1abac071c storage1 C3N-03450.RNA-Seq.genomic.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3d499c6-ea9b-4b21-ac90-e9b702caef84/c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.genomic.gdc_realn.bam 8170300984 BAM hg38 d3d499c6-ea9b-4b21-ac90-e9b702caef84 storage1 @@ -7148,13 +7592,17 @@ C3N-03450.WXS.A.hg38 C3N-03450 GBM WXS tissue_normal /storage1/fs1/dinglab/Activ C3N-03452.RNA-Seq.genomic.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/110b1509-b14a-4783-abd1-c8da615a301b/5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.genomic.gdc_realn.bam 10990858822 BAM hg38 110b1509-b14a-4783-abd1-c8da615a301b storage1 C3N-03452.RNA-Seq.R1.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0556e930-1904-4780-bf80-cdfba5c577b7/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ NA 0556e930-1904-4780-bf80-cdfba5c577b7 storage1 C3N-03452.RNA-Seq.R1.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0556e930-1904-4780-bf80-cdfba5c577b7/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ NA 0556e930-1904-4780-bf80-cdfba5c577b7 storage1 +C3N-03452.RNA-Seq.R1.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcb5374d-d91f-4617-9a0b-33efb9238a3f/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ NA bcb5374d-d91f-4617-9a0b-33efb9238a3f storage1 C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c582f341-273b-490f-9e51-725a98439835/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ NA c582f341-273b-490f-9e51-725a98439835 storage1 C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c582f341-273b-490f-9e51-725a98439835/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ NA c582f341-273b-490f-9e51-725a98439835 storage1 +C3N-03452.RNA-Seq.R2.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b82dc44-54ea-4dcb-8e7c-5b0167c478f0/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ NA 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 storage1 C3N-03452.WXS.A C3N-03452 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85461ad1-223c-4001-b20f-2e1046f69e0c/CPT0405170007.WholeExome.RP-1303.bam 29785107966 BAM hg19 85461ad1-223c-4001-b20f-2e1046f69e0c storage1 C3N-03452.WXS.A.hg38 C3N-03452 GBM WXS tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/852d9345-0a27-41a1-b83a-e25e2bf16e18/c8b69625-dc76-479e-a092-44803759e648_wxs_gdc_realn.bam 40848147125 BAM hg38 852d9345-0a27-41a1-b83a-e25e2bf16e18 storage1 C3N-03452.WXS.N C3N-03452 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58d9dc12-c34c-4698-b5f3-c3f0feb17aaf/CPT0225980002.WholeExome.RP-1303.bam 22176413678 BAM hg19 58d9dc12-c34c-4698-b5f3-c3f0feb17aaf storage1 C3N-03452.WXS.N.hg38 C3N-03452 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72713898-819e-4775-b6e7-8e81a8d14e9e/3d82230b-c081-4c11-9e1f-aed013981520_wxs_gdc_realn.bam 29962435389 BAM hg38 72713898-819e-4775-b6e7-8e81a8d14e9e storage1 C3N-03452.WXS.T.hg38 C3N-03452 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa9af05c-4ced-4641-9f5d-5b425c0008f2/c2109dc6-60b3-4bbe-b997-c781791a92c2_wxs_gdc_realn.bam 31266490554 BAM hg38 fa9af05c-4ced-4641-9f5d-5b425c0008f2 storage1 +C3N-03453.RNA-Seq.R1.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3a1d4f8-d8b2-4e47-be49-bfd4d235448f/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ NA a3a1d4f8-d8b2-4e47-be49-bfd4d235448f storage1 +C3N-03453.RNA-Seq.R2.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d643ac36-a2be-46bd-bcf4-eac66dfe9253/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ NA d643ac36-a2be-46bd-bcf4-eac66dfe9253 storage1 C3N-03453.WXS.N.hg38 C3N-03453 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbef702e-4c4b-439b-84df-4f17c09b025d/883e62e0-05c1-4b41-9315-d32aa83e8990_wxs_gdc_realn.bam 35687539170 BAM hg38 fbef702e-4c4b-439b-84df-4f17c09b025d storage1 C3N-03453.WXS.T.hg38 C3N-03453 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8b4ef77-12ec-4266-a6f6-178327ea0fd0/bce376c8-06f6-4242-a32b-9488f7f4eb82_wxs_gdc_realn.bam 36876819652 BAM hg38 c8b4ef77-12ec-4266-a6f6-178327ea0fd0 storage1 C3N-03456.RNA-Seq.R1.T C3N-03456 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6085a9b1-f8e8-4e81-ba00-08c1af1349ac/190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4617184550 FASTQ NA 6085a9b1-f8e8-4e81-ba00-08c1af1349ac storage1 @@ -7165,10 +7613,16 @@ C3N-03457.RNA-Seq.R1.T C3N-03457 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-03457.RNA-Seq.R2.T C3N-03457 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b5893e7-fe61-4378-8ca9-12d8ef625be6/190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 4399821792 FASTQ NA 1b5893e7-fe61-4378-8ca9-12d8ef625be6 storage1 C3N-03458.RNA-Seq.R1.T C3N-03458 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47bc105c-a6cc-4b35-bfef-3332376921aa/190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R1_001.fastq.gz 3395284766 FASTQ NA 47bc105c-a6cc-4b35-bfef-3332376921aa storage1 C3N-03458.RNA-Seq.R2.T C3N-03458 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd09e850-f5ef-483a-9508-981fe9bf29d4/190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R2_001.fastq.gz 3766041512 FASTQ NA cd09e850-f5ef-483a-9508-981fe9bf29d4 storage1 +C3N-03473.RNA-Seq.chimeric.T.hg38 C3N-03473 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c214a2f0-0955-4839-875e-0b772d01670a/9932b5a7-d884-4be4-9a60-318ea7cda283.rna_seq.chimeric.gdc_realn.bam 43298524 BAM hg38 c214a2f0-0955-4839-875e-0b772d01670a storage1 C3N-03473.RNA-Seq.R1.T C3N-03473 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bd3819d-93da-4567-928b-f5927ac9e1d4/180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ NA 4bd3819d-93da-4567-928b-f5927ac9e1d4 storage1 C3N-03473.RNA-Seq.R2.T C3N-03473 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47023c29-a0d9-44e4-9ee0-c508be560e14/180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ NA 47023c29-a0d9-44e4-9ee0-c508be560e14 storage1 +C3N-03473.RNA-Seq.transcriptome.T.hg38 C3N-03473 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3e68ef3-24a6-4164-9dc8-635515554a36/9932b5a7-d884-4be4-9a60-318ea7cda283.rna_seq.transcriptome.gdc_realn.bam 7706554792 BAM hg38 c3e68ef3-24a6-4164-9dc8-635515554a36 storage1 +C3N-03480.RNA-Seq.R1.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f76e24bf-2452-4f99-8d37-8cbe2327cfbc/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ NA f76e24bf-2452-4f99-8d37-8cbe2327cfbc storage1 +C3N-03480.RNA-Seq.R2.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dc1a8c2-6c07-43e4-9901-b5885da43e33/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ NA 4dc1a8c2-6c07-43e4-9901-b5885da43e33 storage1 C3N-03480.WXS.N.hg38 C3N-03480 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fdb16b2-c34d-44b2-a6d9-cd660db8048a/8546651a-1f37-4289-8c55-d588c65768e2_wxs_gdc_realn.bam 42199263487 BAM hg38 4fdb16b2-c34d-44b2-a6d9-cd660db8048a storage1 C3N-03480.WXS.T.hg38 C3N-03480 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/802cd086-24f7-4a2e-9d26-1b5a574065a2/48422358-852c-4656-ae8a-0128e64c2c10_wxs_gdc_realn.bam 39810831362 BAM hg38 802cd086-24f7-4a2e-9d26-1b5a574065a2 storage1 +C3N-03484.RNA-Seq.R1.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43c7c7da-6399-4ecb-b5e9-7bd1481fd3af/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ NA 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af storage1 +C3N-03484.RNA-Seq.R2.T C3N-03484 GBM RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46385935-1b35-415e-86f3-09448db274f3/50fce217-0cc7-4115-8100-8251b2e1dbe8_wxs_gdc_realn.bam 30506791502 BAM hg38 46385935-1b35-415e-86f3-09448db274f3 storage1 C3N-03755.WXS.T.hg38 C3N-03755 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6a71dfb-c2ed-4488-a1ab-435ed2f4493f/b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wxs_gdc_realn.bam 26137800668 BAM hg38 c6a71dfb-c2ed-4488-a1ab-435ed2f4493f storage1 +C3N-03756.RNA-Seq.R1.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ NA e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 storage1 +C3N-03756.RNA-Seq.R2.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5a6f477-3888-416d-bbe8-c6110091e40e/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ NA d5a6f477-3888-416d-bbe8-c6110091e40e storage1 C3N-03756.WXS.N.hg38 C3N-03756 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55625e73-b970-4eed-a670-24a1338b7427/66e454ec-e406-4636-ac39-6f866a915a54_wxs_gdc_realn.bam 24900533593 BAM hg38 55625e73-b970-4eed-a670-24a1338b7427 storage1 C3N-03756.WXS.T.hg38 C3N-03756 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19d498ba-9032-44d3-bf45-786ac215e4e1/9ff900ed-184e-485a-a302-8547b3370e49_wxs_gdc_realn.bam 31383324403 BAM hg38 19d498ba-9032-44d3-bf45-786ac215e4e1 storage1 +C3N-03757.RNA-Seq.R1.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a00f13f-802b-479a-9c10-208b3158248a/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ NA 4a00f13f-802b-479a-9c10-208b3158248a storage1 +C3N-03757.RNA-Seq.R2.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/973c3d9c-0686-4288-a83d-725e7d2d0488/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ NA 973c3d9c-0686-4288-a83d-725e7d2d0488 storage1 C3N-03757.WXS.N.hg38 C3N-03757 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc78ea1b-1673-4776-a7b8-93d09d7234dd/8d894511-5d1c-4e1d-9276-2652042bb730_wxs_gdc_realn.bam 31169625067 BAM hg38 bc78ea1b-1673-4776-a7b8-93d09d7234dd storage1 C3N-03757.WXS.T.hg38 C3N-03757 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21121304-f000-449a-b9b4-898035459432/fa002608-faaf-4aa1-8594-0146105e9048_wxs_gdc_realn.bam 29973231524 BAM hg38 21121304-f000-449a-b9b4-898035459432 storage1 C3N-03762.RNA-Seq.R1.A C3N-03762 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d8aace6-dfbe-405a-a72d-0e7aad158a73/200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R1_001.fastq.gz 4073473721 FASTQ NA 2d8aace6-dfbe-405a-a72d-0e7aad158a73 storage1 @@ -7249,8 +7713,11 @@ C3N-03767.RNA-Seq.R1.T C3N-03767 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3N-03767.RNA-Seq.R1.T C3N-03767 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c908803c-3935-4016-950c-87170439cf92/190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R1_001.fastq.gz 4133180720 FASTQ NA c908803c-3935-4016-950c-87170439cf92 storage1 C3N-03767.RNA-Seq.R2.T C3N-03767 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e24a777-67f7-4371-bf56-f5ab2a8dc9b2/190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R2_001.fastq.gz 4499270582 FASTQ NA 3e24a777-67f7-4371-bf56-f5ab2a8dc9b2 storage1 C3N-03767.RNA-Seq.R2.T C3N-03767 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e76352e6-b50c-4f8e-bf35-0bb459e223b5/20210729_P3_E12_WB7988-Plate3_S60_R2_001.fastq.gz 5434732832 FASTQ NA e76352e6-b50c-4f8e-bf35-0bb459e223b5 storage1 +C3N-03778.RNA-Seq.genomic.T.hg38 C3N-03778 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9695eae4-5566-4699-aa1a-b2dc361a1d48/1ea24a8a-a114-4dd3-b3be-8b1aab9a80d8.rna_seq.genomic.gdc_realn.bam 9627492553 BAM hg38 9695eae4-5566-4699-aa1a-b2dc361a1d48 storage1 C3N-03778.RNA-Seq.R1.T C3N-03778 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7e0f140-c87d-4ea7-98a5-5b7da9618454/190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R1_001.fastq.gz 3534292099 FASTQ NA d7e0f140-c87d-4ea7-98a5-5b7da9618454 storage1 C3N-03778.RNA-Seq.R2.T C3N-03778 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba8b7185-1e3a-43ed-bf0a-7d82c45f4a36/190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R2_001.fastq.gz 3526112851 FASTQ NA ba8b7185-1e3a-43ed-bf0a-7d82c45f4a36 storage1 +C3N-03780.RNA-Seq.genomic.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19d7e303-11e8-411b-82d0-68b631fb577a/aa8fe382-889f-45a1-a046-bb02fda53a6a.rna_seq.genomic.gdc_realn.bam 11544841447 BAM hg38 19d7e303-11e8-411b-82d0-68b631fb577a storage1 +C3N-03780.RNA-Seq.genomic.T.hg38 C3N-03780 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52d2fcb3-f589-4c46-a289-138b40ace481/df017c22-4ba5-4fda-b415-d5bba4b1df99.rna_seq.genomic.gdc_realn.bam 7015491017 BAM hg38 52d2fcb3-f589-4c46-a289-138b40ace481 storage1 C3N-03780.RNA-Seq.R1.A C3N-03780 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8108edeb-bd18-486f-be0f-772a1af60742/190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R1_001.fastq.gz 4567717714 FASTQ NA 8108edeb-bd18-486f-be0f-772a1af60742 storage1 C3N-03780.RNA-Seq.R1.T C3N-03780 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a4726d6-a4ec-4223-8097-7a98ac3eb16d/190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R1_001.fastq.gz 2545110771 FASTQ NA 7a4726d6-a4ec-4223-8097-7a98ac3eb16d storage1 C3N-03780.RNA-Seq.R2.A C3N-03780 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba1a9248-3c0d-42a8-86a6-4c34d80ce349/190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R2_001.fastq.gz 4637049645 FASTQ NA ba1a9248-3c0d-42a8-86a6-4c34d80ce349 storage1 @@ -7269,8 +7736,12 @@ C3N-03785.RNA-Seq.R1.T C3N-03785 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-03785.RNA-Seq.R1.T C3N-03785 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0ff1012-7fea-4576-a2bf-f23a8c483ad5/20210723_P2_E9_WB7988-plate2_S57_R1_001.fastq.gz 7681162215 FASTQ NA f0ff1012-7fea-4576-a2bf-f23a8c483ad5 storage1 C3N-03785.RNA-Seq.R2.T C3N-03785 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7bc6f70-e6b1-4dec-980e-8aac75250ae6/190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R2_001.fastq.gz 4640347212 FASTQ NA d7bc6f70-e6b1-4dec-980e-8aac75250ae6 storage1 C3N-03785.RNA-Seq.R2.T C3N-03785 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2809076-3d8e-4a38-b328-4cd384377e7a/20210723_P2_E9_WB7988-plate2_S57_R2_001.fastq.gz 7946218093 FASTQ NA e2809076-3d8e-4a38-b328-4cd384377e7a storage1 +C3N-03789.RNA-Seq.R1.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de40a9c3-603d-44e2-a76e-9b4a98d3f482/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ NA de40a9c3-603d-44e2-a76e-9b4a98d3f482 storage1 +C3N-03789.RNA-Seq.R2.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f25e421-ff9d-41ab-bef9-2503901bdb40/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ NA 0f25e421-ff9d-41ab-bef9-2503901bdb40 storage1 C3N-03789.WXS.N.hg38 C3N-03789 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502434e4-f053-44d4-b480-d40873a0c659/d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wxs_gdc_realn.bam 34710561156 BAM hg38 502434e4-f053-44d4-b480-d40873a0c659 storage1 C3N-03789.WXS.T.hg38 C3N-03789 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfa3caaf-f484-40f9-bd13-3708af6901c4/81c4a568-2fb2-44a1-b5cd-0654380d459a_wxs_gdc_realn.bam 25433729718 BAM hg38 cfa3caaf-f484-40f9-bd13-3708af6901c4 storage1 +C3N-03791.RNA-Seq.R1.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/278403a7-7c34-4b9e-97d5-98df7b34b730/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ NA 278403a7-7c34-4b9e-97d5-98df7b34b730 storage1 +C3N-03791.RNA-Seq.R2.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0f0a291-d112-4eac-affa-355d24b03424/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ NA e0f0a291-d112-4eac-affa-355d24b03424 storage1 C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16b1732d-19aa-4414-a010-261a7c7295d1/2b68f934-9910-4dc6-adc3-1cf82764a7a0_wxs_gdc_realn.bam 44267823987 BAM hg38 16b1732d-19aa-4414-a010-261a7c7295d1 storage1 C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93a0f29b-98ed-46e0-8f8b-03e4b9e363db/a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM hg38 93a0f29b-98ed-46e0-8f8b-03e4b9e363db storage1 C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d32ab761-f74c-4264-b248-f792d99173e5/1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.genomic.gdc_realn.bam 8634408522 BAM hg38 d32ab761-f74c-4264-b248-f792d99173e5 storage1 @@ -7291,18 +7762,26 @@ C3N-03797.RNA-Seq.R1.T C3N-03797 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-03797.RNA-Seq.R2.T C3N-03797 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e0d0413-eaf2-4b81-9784-5f28d36b9eb3/200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ NA 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 storage1 C3N-03797.WXS.N.hg38 C3N-03797 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6247145-875d-4914-adf0-8b436ca75f7a/966c6951-4f60-4deb-8ffe-9c5954afab8e_wxs_gdc_realn.bam 36770309194 BAM hg38 d6247145-875d-4914-adf0-8b436ca75f7a storage1 C3N-03797.WXS.T.hg38 C3N-03797 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8e6d27b-1138-4d47-a6f5-2a6035dcb281/422a6465-56ff-4265-bb86-43cf4b882e46_wxs_gdc_realn.bam 27735760494 BAM hg38 e8e6d27b-1138-4d47-a6f5-2a6035dcb281 storage1 +C3N-03800.RNA-Seq.R1.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6980cb7-4d87-452d-ace8-f2419ef4d665/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ NA a6980cb7-4d87-452d-ace8-f2419ef4d665 storage1 +C3N-03800.RNA-Seq.R2.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9082c1c1-5abd-4a0e-8f6e-750b5dff16e8/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ NA 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 storage1 C3N-03800.WXS.N.hg38 C3N-03800 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca9914cc-5a12-4203-9c17-2de3a52076c9/74161594-9926-4852-9bef-076363ce5266_wxs_gdc_realn.bam 43605032937 BAM hg38 ca9914cc-5a12-4203-9c17-2de3a52076c9 storage1 C3N-03800.WXS.T.hg38 C3N-03800 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b91c3e29-9d7c-4b06-b11c-4766adffd8b0/27ccdf5d-88bc-4b87-be27-161ef297a99d_wxs_gdc_realn.bam 35179857229 BAM hg38 b91c3e29-9d7c-4b06-b11c-4766adffd8b0 storage1 +C3N-03802.RNA-Seq.R1.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/255a8e1c-dc69-4ec7-a76f-1877b51b4f23/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ NA 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 storage1 +C3N-03802.RNA-Seq.R2.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f86f26d6-0c6b-4120-b71f-4fd632f2ec9c/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ NA f86f26d6-0c6b-4120-b71f-4fd632f2ec9c storage1 C3N-03802.WXS.N.hg38 C3N-03802 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/873a455c-8270-4254-8033-313e94158f63/21f596c1-4a26-44b2-8c1b-4697d7884d6f_wxs_gdc_realn.bam 42162146910 BAM hg38 873a455c-8270-4254-8033-313e94158f63 storage1 C3N-03802.WXS.T.hg38 C3N-03802 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f485b85f-858c-41c8-99a5-02d2f889894b/dbd9368c-c526-4f91-b575-85678ca920d4_wxs_gdc_realn.bam 37570077761 BAM hg38 f485b85f-858c-41c8-99a5-02d2f889894b storage1 +C3N-03810.RNA-Seq.R1.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fbe432e-3582-4d23-ae52-931b334f2112/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ NA 8fbe432e-3582-4d23-ae52-931b334f2112 storage1 +C3N-03810.RNA-Seq.R2.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9bb314d-81a3-4b4a-b3c8-935f7db8d048/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ NA c9bb314d-81a3-4b4a-b3c8-935f7db8d048 storage1 C3N-03810.WXS.N.hg38 C3N-03810 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4157794-616f-4717-8a72-45784b5619d4/ca49ed01-ced5-4674-95c9-b77361506dbc_wxs_gdc_realn.bam 39782441736 BAM hg38 b4157794-616f-4717-8a72-45784b5619d4 storage1 C3N-03810.WXS.T.hg38 C3N-03810 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2077b46c-6a73-4349-a5a8-a189fba4a1d0/cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wxs_gdc_realn.bam 30576782514 BAM hg38 2077b46c-6a73-4349-a5a8-a189fba4a1d0 storage1 C3N-03837.RNA-Seq.R1.A C3N-03837 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c/190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R1_001.fastq.gz 5232135560 FASTQ NA 7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c storage1 C3N-03837.RNA-Seq.R1.T C3N-03837 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91df6fd0-bb82-42e3-a4cc-94acc3a2dac5/190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3292865459 FASTQ NA 91df6fd0-bb82-42e3-a4cc-94acc3a2dac5 storage1 C3N-03837.RNA-Seq.R2.A C3N-03837 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19e36b22-9eed-4846-9fe7-ae1df2d2183d/190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R2_001.fastq.gz 5292215494 FASTQ NA 19e36b22-9eed-4846-9fe7-ae1df2d2183d storage1 C3N-03837.RNA-Seq.R2.T C3N-03837 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0b82c84-e1cf-4703-9a71-9996f4c7149a/190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3723913348 FASTQ NA f0b82c84-e1cf-4703-9a71-9996f4c7149a storage1 +C3N-03839.RNA-Seq.genomic.T.hg38 C3N-03839 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7947df45-0014-4125-b8fe-e0ba0d5a696f/fb6b8765-0054-4037-8d11-60e1f6fa8d37.rna_seq.genomic.gdc_realn.bam 8203129165 BAM hg38 7947df45-0014-4125-b8fe-e0ba0d5a696f storage1 C3N-03839.RNA-Seq.R1.T C3N-03839 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56fe9c85-1d66-4676-a4ae-b27a67bdb36b/190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3838586486 FASTQ NA 56fe9c85-1d66-4676-a4ae-b27a67bdb36b storage1 C3N-03839.RNA-Seq.R2.T C3N-03839 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf2313fd-9f78-485d-be5a-58bd48fe3f4f/190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4280739338 FASTQ NA bf2313fd-9f78-485d-be5a-58bd48fe3f4f storage1 +C3N-03840.RNA-Seq.genomic.T.hg38 C3N-03840 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d01352d-09ef-4726-aca1-64c558c26c48/11bb8f20-a9b6-48ec-b6cc-8c70de3ade4e.rna_seq.genomic.gdc_realn.bam 7066857007 BAM hg38 0d01352d-09ef-4726-aca1-64c558c26c48 storage1 C3N-03840.RNA-Seq.R1.T C3N-03840 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f99208f-7c99-4c60-9700-e2f270009f77/190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R1_001.fastq.gz 3427969856 FASTQ NA 0f99208f-7c99-4c60-9700-e2f270009f77 storage1 C3N-03840.RNA-Seq.R2.T C3N-03840 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08696071-b690-42cc-97dd-ea0d068a034b/190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R2_001.fastq.gz 3695037407 FASTQ NA 08696071-b690-42cc-97dd-ea0d068a034b storage1 C3N-03841.RNA-Seq.R1.A C3N-03841 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10c05c73-0d70-475e-bac0-5dcf5bf85d17/190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R1_001.fastq.gz 3550970262 FASTQ NA 10c05c73-0d70-475e-bac0-5dcf5bf85d17 storage1 @@ -7321,6 +7800,7 @@ C3N-03851.RNA-Seq.R1.A C3N-03851 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-03851.RNA-Seq.R1.T C3N-03851 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/093e9037-e025-4003-aef6-63b023192ac8/190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3646899211 FASTQ NA 093e9037-e025-4003-aef6-63b023192ac8 storage1 C3N-03851.RNA-Seq.R2.A C3N-03851 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f46106ca-b640-4caa-ae6a-633020d2cb97/190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 4724113570 FASTQ NA f46106ca-b640-4caa-ae6a-633020d2cb97 storage1 C3N-03851.RNA-Seq.R2.T C3N-03851 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2a93566-f7c3-40ae-acfc-8a164752cfe2/190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R2_001.fastq.gz 4079259403 FASTQ NA c2a93566-f7c3-40ae-acfc-8a164752cfe2 storage1 +C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor 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RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4aef951a-5c9b-4958-8087-7c984ed73fc0/190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R2_001.fastq.gz 4428893679 FASTQ NA 4aef951a-5c9b-4958-8087-7c984ed73fc0 storage1 +C3N-03884.RNA-Seq.genomic.T.hg38 C3N-03884 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92df6115-fec4-4c7c-976c-cc9e1365921c/07a73190-c4a0-4de2-8664-ccdb6b6095f0.rna_seq.genomic.gdc_realn.bam 7514515066 BAM hg38 92df6115-fec4-4c7c-976c-cc9e1365921c storage1 C3N-03884.RNA-Seq.R1.T C3N-03884 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1678b0d3-790a-47c6-8932-84b97d78b646/190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R1_001.fastq.gz 2696062533 FASTQ NA 1678b0d3-790a-47c6-8932-84b97d78b646 storage1 C3N-03884.RNA-Seq.R2.T C3N-03884 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8a094fa-5246-43bc-8935-4df5619244bc/190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R2_001.fastq.gz 2709463050 FASTQ NA a8a094fa-5246-43bc-8935-4df5619244bc storage1 C3N-03886.RNA-Seq.R1.T C3N-03886 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de33e2bb-7c5c-4f98-9b87-bec139d5e995/190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R1_001.fastq.gz 4178740767 FASTQ NA de33e2bb-7c5c-4f98-9b87-bec139d5e995 storage1 @@ -7397,23 +7878,39 @@ C3N-03933.RNA-Seq.R1.T C3N-03933 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-03933.RNA-Seq.R2.A C3N-03933 HNSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ce107ec-5214-4e15-9f89-d8384bfe344b/190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R2_001.fastq.gz 4314337980 FASTQ NA 4ce107ec-5214-4e15-9f89-d8384bfe344b storage1 C3N-03933.RNA-Seq.R2.T C3N-03933 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/470782ea-f98a-458f-a619-42beeee414af/20210723_P2_A2_WB7988-plate2_S2_R2_001.fastq.gz 5209190246 FASTQ NA 470782ea-f98a-458f-a619-42beeee414af storage1 C3N-03933.RNA-Seq.R2.T C3N-03933 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd399b5f-07c0-49b2-bd2a-40ecb455382c/190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R2_001.fastq.gz 3937845323 FASTQ NA dd399b5f-07c0-49b2-bd2a-40ecb455382c storage1 +C3N-03935.RNA-Seq.R1.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c91740e-2276-47a4-9b32-c7720ab51594/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ NA 4c91740e-2276-47a4-9b32-c7720ab51594 storage1 +C3N-03935.RNA-Seq.R2.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87079c71-53a8-4bf0-925d-e914da7bfd96/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ NA 87079c71-53a8-4bf0-925d-e914da7bfd96 storage1 C3N-03935.WXS.N.hg38 C3N-03935 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aff2f741-3432-47fc-a21a-121927b7e96c/6d9e79c5-a520-4b3b-bae8-a483281851f4_wxs_gdc_realn.bam 44665231448 BAM hg38 aff2f741-3432-47fc-a21a-121927b7e96c storage1 C3N-03935.WXS.T.hg38 C3N-03935 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4e94091-101c-40bb-bce6-404972b3fa7e/9e503f81-06bd-4083-8f68-04dab904125f_wxs_gdc_realn.bam 43446340788 BAM hg38 f4e94091-101c-40bb-bce6-404972b3fa7e storage1 +C3N-03939.RNA-Seq.R1.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f4dd232-5cba-4b97-bd63-f47967a5436a/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ NA 3f4dd232-5cba-4b97-bd63-f47967a5436a storage1 +C3N-03939.RNA-Seq.R2.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/452a0caf-f993-41ba-9f18-1a1180aeb710/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ NA 452a0caf-f993-41ba-9f18-1a1180aeb710 storage1 C3N-03939.WXS.N.hg38 C3N-03939 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96c5d2ef-106f-4362-a6c4-49724e0abe80/6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wxs_gdc_realn.bam 34765297539 BAM hg38 96c5d2ef-106f-4362-a6c4-49724e0abe80 storage1 C3N-03939.WXS.T.hg38 C3N-03939 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7292b808-4c7a-4240-a3d3-096db96095b1/fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wxs_gdc_realn.bam 23051245145 BAM hg38 7292b808-4c7a-4240-a3d3-096db96095b1 storage1 +C3N-04092.RNA-Seq.R1.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ NA 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 storage1 +C3N-04092.RNA-Seq.R2.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07a3bbdc-69c2-485b-98b2-82ada22cae69/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ NA 07a3bbdc-69c2-485b-98b2-82ada22cae69 storage1 C3N-04092.WXS.N.hg38 C3N-04092 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf40953c-253a-4b01-afd9-04ad79976e45/79ce8e10-2d6f-4d92-a58c-a34c06af7677_wxs_gdc_realn.bam 37382509699 BAM hg38 bf40953c-253a-4b01-afd9-04ad79976e45 storage1 C3N-04092.WXS.T.hg38 C3N-04092 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a591e41-81b8-497b-a030-e20bbbf8e555/01e34584-fe56-487f-900d-0c82daf338a0_wxs_gdc_realn.bam 37480467959 BAM hg38 8a591e41-81b8-497b-a030-e20bbbf8e555 storage1 +C3N-04094.RNA-Seq.R1.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa31d2b3-82b2-4734-8c22-ac89b732e8a2/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ NA fa31d2b3-82b2-4734-8c22-ac89b732e8a2 storage1 +C3N-04094.RNA-Seq.R2.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254472af-7bd3-4dfb-9014-c2dc90560859/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ NA 254472af-7bd3-4dfb-9014-c2dc90560859 storage1 C3N-04094.WXS.N.hg38 C3N-04094 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30918018-bf91-418f-9d9f-b7d873524ee0/1890659f-5698-4b8f-a0bf-1da6b3791731_wxs_gdc_realn.bam 28904441295 BAM hg38 30918018-bf91-418f-9d9f-b7d873524ee0 storage1 C3N-04094.WXS.T.hg38 C3N-04094 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fb8f474-4c02-4a4e-8281-6472347703c7/917e08bc-e1f6-4a6f-a593-4b99445df33e_wxs_gdc_realn.bam 32627517794 BAM hg38 0fb8f474-4c02-4a4e-8281-6472347703c7 storage1 +C3N-04097.RNA-Seq.R1.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e14644a-eeec-4d36-a439-d7defafab519/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ NA 9e14644a-eeec-4d36-a439-d7defafab519 storage1 +C3N-04097.RNA-Seq.R2.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1b1a394-d643-496b-b856-60147ea00c1a/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ NA f1b1a394-d643-496b-b856-60147ea00c1a storage1 C3N-04097.WXS.N.hg38 C3N-04097 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9e2e52a-6327-4053-8262-66ca49ec97ee/926063e7-fbde-4313-8074-4ca104eef182_wxs_gdc_realn.bam 45034306382 BAM hg38 f9e2e52a-6327-4053-8262-66ca49ec97ee storage1 C3N-04097.WXS.T.hg38 C3N-04097 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c394da8c-1cc9-4554-9d4a-5ac062b4aa42/dc8d772e-ffad-4cc1-9a32-80000b767f7b_wxs_gdc_realn.bam 23088909668 BAM hg38 c394da8c-1cc9-4554-9d4a-5ac062b4aa42 storage1 +C3N-04098.RNA-Seq.R1.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4772d8e-0ded-4236-8602-1b1dfe51e8df/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ NA e4772d8e-0ded-4236-8602-1b1dfe51e8df storage1 +C3N-04098.RNA-Seq.R2.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/129e4b38-443f-4cf9-8e20-f98ccef517c8/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ NA 129e4b38-443f-4cf9-8e20-f98ccef517c8 storage1 C3N-04098.WXS.N.hg38 C3N-04098 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33f39ddb-4185-4905-81a6-52c9429067cc/6416d98a-0117-48ec-a6ea-0875e22f55aa_wxs_gdc_realn.bam 27415183845 BAM hg38 33f39ddb-4185-4905-81a6-52c9429067cc storage1 C3N-04098.WXS.T.hg38 C3N-04098 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2002b1f2-6753-4744-aca7-282e72f76dfb/884a7198-709f-4946-9e7a-dea9055906df_wxs_gdc_realn.bam 31334787046 BAM hg38 2002b1f2-6753-4744-aca7-282e72f76dfb storage1 +C3N-04100.RNA-Seq.R1.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5d4dee6-5523-43c9-902b-c019c3a29533/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ NA d5d4dee6-5523-43c9-902b-c019c3a29533 storage1 +C3N-04100.RNA-Seq.R2.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92f769cc-3b94-4805-bef6-3de96959e898/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ NA 92f769cc-3b94-4805-bef6-3de96959e898 storage1 C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c20addd-92b7-436e-b8c7-0e202439e2eb/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM hg38 7c20addd-92b7-436e-b8c7-0e202439e2eb storage1 C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/645e357e-7bdf-4136-812c-e02db7f7fab0/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM hg38 645e357e-7bdf-4136-812c-e02db7f7fab0 storage1 C3N-04113.RNA-Seq.genomic.T.RRNA_rk3EEVp.hg38 C3N-04113 GBM RNA-Seq tumor 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/storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57e66976-7cfd-4dc7-960f-61b01cf53055/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ NA 57e66976-7cfd-4dc7-960f-61b01cf53055 storage1 C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88491985-2778-4634-b8ed-32a17626ad72/CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM hg19 88491985-2778-4634-b8ed-32a17626ad72 storage1 @@ -7424,6 +7921,7 @@ C3N-04113.WXS.N C3N-04113 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Acti C3N-04113.WXS.N.hg38 C3N-04113 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4e8f80c-7798-4472-9e9d-8a6cb4bfe9c5/48f76814-e8a6-4689-ae08-37a3da4fbccf_wxs_gdc_realn.bam 40739124735 BAM hg38 a4e8f80c-7798-4472-9e9d-8a6cb4bfe9c5 storage1 C3N-04113.WXS.T.RDNA_o25vvXX C3N-04113 GBM WXS tumor 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C3N-04125.RNA-Seq.R1.T C3N-04125 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f5333d2-f5e8-4238-93cc-a43a1d94750e/201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ NA 4f5333d2-f5e8-4238-93cc-a43a1d94750e storage1 C3N-04125.RNA-Seq.R2.A C3N-04125 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fdfef3a-5922-4158-81fc-d9c462eb95e6/201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ NA 2fdfef3a-5922-4158-81fc-d9c462eb95e6 storage1 C3N-04125.RNA-Seq.R2.T C3N-04125 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e72caf0c-fb26-4d24-b284-a15ed7df1ed0/201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ NA e72caf0c-fb26-4d24-b284-a15ed7df1ed0 storage1 +C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0818c9a1-d1ce-4b6d-95c5-760080f9b113/6872bf89-41dc-46b3-a3a8-f494769aac20.rna_seq.genomic.gdc_realn.bam 10205301549 BAM hg38 0818c9a1-d1ce-4b6d-95c5-760080f9b113 storage1 C3N-04126.RNA-Seq.R1.T C3N-04126 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35bc239c-6aff-408b-afa3-dcebcb5e3f05/190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R1_001.fastq.gz 4684069459 FASTQ NA 35bc239c-6aff-408b-afa3-dcebcb5e3f05 storage1 C3N-04126.RNA-Seq.R2.T C3N-04126 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c465402-f38f-49cb-9c73-bcc141ded2cf/190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R2_001.fastq.gz 5065805986 FASTQ NA 0c465402-f38f-49cb-9c73-bcc141ded2cf storage1 C3N-04127.RNA-Seq.R1.A C3N-04127 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae07e32e-d225-422d-859a-71d95ae2ad13/190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R1_001.fastq.gz 4534378721 FASTQ NA ae07e32e-d225-422d-859a-71d95ae2ad13 storage1 @@ -7514,16 +8013,22 @@ C3N-04280.RNA-Seq.R1.T C3N-04280 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-04280.RNA-Seq.R1.T C3N-04280 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/891ebcec-52f4-4ca9-ba9c-66030838f59f/190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R1_001.fastq.gz 3717916985 FASTQ NA 891ebcec-52f4-4ca9-ba9c-66030838f59f storage1 C3N-04280.RNA-Seq.R2.T C3N-04280 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb6805d0-d597-4650-b2fa-2b49d5f94e07/190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R2_001.fastq.gz 4278515231 FASTQ NA bb6805d0-d597-4650-b2fa-2b49d5f94e07 storage1 C3N-04280.RNA-Seq.R2.T C3N-04280 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8be5a53-0cec-43c9-89ff-6313ea3f1424/20210729_P3_C6_WB7988-Plate3_S30_R2_001.fastq.gz 10266132413 FASTQ NA f8be5a53-0cec-43c9-89ff-6313ea3f1424 storage1 +C3N-04282.RNA-Seq.genomic.T.hg38 C3N-04282 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a09d6aaa-a6da-43e6-807e-c27cae87ffcf/0354b33c-83c4-47ad-a231-cafd2919a142.rna_seq.genomic.gdc_realn.bam 8352808352 BAM hg38 a09d6aaa-a6da-43e6-807e-c27cae87ffcf storage1 C3N-04282.RNA-Seq.R1.T C3N-04282 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48f5ca48-36ca-489c-a76e-2623665b37c3/190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R1_001.fastq.gz 4063994812 FASTQ NA 48f5ca48-36ca-489c-a76e-2623665b37c3 storage1 C3N-04282.RNA-Seq.R2.T C3N-04282 PDA RNA-Seq tumor 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/storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ed41278-1ed2-43c8-862c-5a7f96cec395/190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R1_001.fastq.gz 4132845700 FASTQ NA 8ed41278-1ed2-43c8-862c-5a7f96cec395 storage1 C3N-04283.RNA-Seq.R1.T C3N-04283 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c3a6510-d2eb-4e12-88f5-5ed58b63d965/190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 3966628698 FASTQ NA 3c3a6510-d2eb-4e12-88f5-5ed58b63d965 storage1 C3N-04283.RNA-Seq.R2.A C3N-04283 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e029eda1-f5a9-4e79-8ba3-65c0d6c76042/190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R2_001.fastq.gz 4510226646 FASTQ NA e029eda1-f5a9-4e79-8ba3-65c0d6c76042 storage1 C3N-04283.RNA-Seq.R2.T C3N-04283 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fabcefa5-c60a-4ebc-8840-b9709950055a/190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 4636411008 FASTQ NA fabcefa5-c60a-4ebc-8840-b9709950055a storage1 +C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01caf05d-f998-4b97-abff-726a19d42b45/0a4b95b9-5507-4d4b-8f44-5757cdabe1c4.rna_seq.genomic.gdc_realn.bam 7886861222 BAM hg38 01caf05d-f998-4b97-abff-726a19d42b45 storage1 C3N-04284.RNA-Seq.R1.T C3N-04284 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54995544-cea1-42b1-9af1-0c6fd5b2727d/190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R1_001.fastq.gz 3752966426 FASTQ NA 54995544-cea1-42b1-9af1-0c6fd5b2727d storage1 C3N-04284.RNA-Seq.R2.T C3N-04284 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7f1226b-4f3f-46c0-9361-c778198eff96/190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R2_001.fastq.gz 3852584043 FASTQ NA c7f1226b-4f3f-46c0-9361-c778198eff96 storage1 C3N-04288.RNA-Seq.R1.T C3N-04288 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/739c7d8c-9cf6-42fe-ac40-e9aa4e714697/20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ NA 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 storage1 C3N-04288.RNA-Seq.R2.T C3N-04288 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7769ab5f-e80e-4d7c-b204-e26c8dd7a925/20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ NA 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 storage1 +C3N-04312.RNA-Seq.R1.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9ffa766-00b4-43fc-9cdd-d894a2cdce9c/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ NA b9ffa766-00b4-43fc-9cdd-d894a2cdce9c storage1 +C3N-04312.RNA-Seq.R2.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7db80f50-b30d-44fc-9bc6-e03eb048a892/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ NA 7db80f50-b30d-44fc-9bc6-e03eb048a892 storage1 C3N-04312.WXS.N.hg38 C3N-04312 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8261bf69-e50f-4985-a7ff-67a826adb3b2/37205469-4d6f-486b-905f-c54392d21b4f_wxs_gdc_realn.bam 29415715888 BAM hg38 8261bf69-e50f-4985-a7ff-67a826adb3b2 storage1 C3N-04312.WXS.T.hg38 C3N-04312 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4edbb076-c48b-46a8-9467-2ebb7b64d243/1c1ab64b-1728-442b-9e26-f37a1af24c9f_wxs_gdc_realn.bam 34483195424 BAM hg38 4edbb076-c48b-46a8-9467-2ebb7b64d243 storage1 C3N-04382.RNA-Seq.R1.A C3N-04382 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00b5e191-d32c-4209-8035-5d23acfffb95/190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4485057847 FASTQ NA 00b5e191-d32c-4209-8035-5d23acfffb95 storage1 @@ -7578,8 +8083,12 @@ C3N-04673.RNA-Seq.R1.T C3N-04673 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active C3N-04673.RNA-Seq.R2.T C3N-04673 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78930632-295f-491b-b11a-b6464128ac8b/200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4697890786 FASTQ NA 78930632-295f-491b-b11a-b6464128ac8b storage1 C3N-04673.WGS.N.hg38 C3N-04673 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e54044d4-1010-4a9d-a0ae-fcc4b14d8126/2146b731-6763-48fb-a3eb-b18ee89cfb73_wgs_gdc_realn.bam 74356314911 BAM hg38 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 storage1 C3N-04673.WGS.T.hg38 C3N-04673 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3aec8b92-8f04-4415-91a0-083e7d10a472/70db54d7-3201-4b69-bb47-74987b867428_wgs_gdc_realn.bam 77310697754 BAM hg38 3aec8b92-8f04-4415-91a0-083e7d10a472 storage1 +C3N-04683.RNA-Seq.R1.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4501fe75-7e04-4fc8-9b96-80dc695086b6/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ NA 4501fe75-7e04-4fc8-9b96-80dc695086b6 storage1 +C3N-04683.RNA-Seq.R2.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7334afa-2cbe-448d-9768-0bff2678dec7/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ NA e7334afa-2cbe-448d-9768-0bff2678dec7 storage1 C3N-04683.WXS.N.hg38 C3N-04683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cd843ae-9cf6-4d57-84d1-d569c1e95ddf/83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wxs_gdc_realn.bam 31548967163 BAM hg38 4cd843ae-9cf6-4d57-84d1-d569c1e95ddf storage1 C3N-04683.WXS.T.hg38 C3N-04683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb548d65-f75d-43a2-8ff7-91f8654f2ea7/caea80b3-44ef-4e4b-a5a5-91889e0ca761_wxs_gdc_realn.bam 29106959762 BAM hg38 eb548d65-f75d-43a2-8ff7-91f8654f2ea7 storage1 +C3N-04686.RNA-Seq.R1.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/157280cb-210f-407f-997c-cbd5fbd18578/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ NA 157280cb-210f-407f-997c-cbd5fbd18578 storage1 +C3N-04686.RNA-Seq.R2.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d47e078-6b42-4a7e-abcc-5a82b3dfd843/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ NA 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 storage1 C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8/04d7ff8e-1924-477d-a04b-5eaef2815a7d_wxs_gdc_realn.bam 36653203165 BAM hg38 f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8 storage1 C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/349a677b-4595-415c-b4ba-774a966c92c7/c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM hg38 349a677b-4595-415c-b4ba-774a966c92c7 storage1 C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18d53c42-543f-40cd-a958-3d1a1437b8bc/a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.genomic.gdc_realn.bam 11869610513 BAM hg38 18d53c42-543f-40cd-a958-3d1a1437b8bc storage1 @@ -7593,8 +8102,12 @@ C3N-04688.RNA-Seq.R1.T C3N-04688 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3N-04688.RNA-Seq.R2.T C3N-04688 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4aee9ea-7564-4b34-b48a-6b075d30ac05/20210729_P3_A6_WB7988-Plate3_S6_R2_001.fastq.gz 4665353178 FASTQ NA f4aee9ea-7564-4b34-b48a-6b075d30ac05 storage1 C3N-04689.RNA-Seq.R1.T C3N-04689 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6b7d197-cd63-443b-94a4-6bbf901f93b9/20210729_P3_E6_WB7988-Plate3_S54_R1_001.fastq.gz 3966281016 FASTQ NA b6b7d197-cd63-443b-94a4-6bbf901f93b9 storage1 C3N-04689.RNA-Seq.R2.T C3N-04689 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/380cf5f9-c798-449a-953f-f746c14a527c/20210729_P3_E6_WB7988-Plate3_S54_R2_001.fastq.gz 4071577972 FASTQ NA 380cf5f9-c798-449a-953f-f746c14a527c storage1 +C3N-04691.RNA-Seq.R1.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b611a73-3ec3-456e-95fd-6f25ee476c28/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ NA 8b611a73-3ec3-456e-95fd-6f25ee476c28 storage1 +C3N-04691.RNA-Seq.R2.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a016bfe-4773-486e-be6e-af9ed353c9b5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ NA 0a016bfe-4773-486e-be6e-af9ed353c9b5 storage1 C3N-04691.WXS.N.hg38 C3N-04691 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3/cdd22aae-ff9d-430d-a275-1da5f8befaab_wxs_gdc_realn.bam 37966628766 BAM hg38 c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3 storage1 C3N-04691.WXS.T.hg38 C3N-04691 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cfd40cf-be18-4ded-aafc-26e3705fb482/c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wxs_gdc_realn.bam 32312688782 BAM hg38 4cfd40cf-be18-4ded-aafc-26e3705fb482 storage1 +C3N-04693.RNA-Seq.R1.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95e19f64-f558-4704-b020-3cc06287e7f4/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ NA 95e19f64-f558-4704-b020-3cc06287e7f4 storage1 +C3N-04693.RNA-Seq.R2.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7144248c-c457-48a8-bd20-e742f014d9bd/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ NA 7144248c-c457-48a8-bd20-e742f014d9bd storage1 C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fb6bf47-d501-4858-ba49-6e2cd516474a/b996ab8e-ae14-42ed-ac60-b74d932c0460_wxs_gdc_realn.bam 40597818463 BAM hg38 6fb6bf47-d501-4858-ba49-6e2cd516474a storage1 C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e/27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM hg38 e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e storage1 C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98/747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.genomic.gdc_realn.bam 9691045980 BAM hg38 2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98 storage1