From 7b6f85967dbd82b17cf22c86bdb280eed4feeb48 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Thu, 8 Dec 2022 15:21:12 -0600 Subject: [PATCH] Discovery run 20221207 --- CPTAC3.Catalog.dat | 217 +++++++++++++++++++++++++++++++---- CPTAC3.Demographics.dat | 39 ++++++- Catalog3/CPTAC3.Catalog3.tsv | 211 ++++++++++++++++++++++++++++++---- 3 files changed, 421 insertions(+), 46 deletions(-) diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 5c6def6..ab9dfd4 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -63,8 +63,8 @@ 11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM NA 051bf441-b940-4e4b-95a9-86f8f892090c 32790a3f4a9a5734fa765782c4bc1a42 hg38 Blood Derived Normal 6b328a7b-2d97-4a02-8a6c-89f96a 11LU035.WGS.T 11LU035 LUAD WGS tumor CPT0051690010 CPT0051690010.WholeGenome.RP-1303.bam 74480616961 BAM NA 0b0c0e88-1aa3-44f5-a012-1510e623540a 6e4ccb5b5f85cbf312ad1f091c6434b4 hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 11LU035.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010 e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 113280187604 BAM NA 83b77360-ef94-43ea-9ac2-7229808e2512 b189b1c9f7d0de556e9cde70d6afa3fc hg38 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 -11LU035.WGS.T.UNK_kZ2yRAx 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM NA c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNK_kZ2yRAx This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot -11LU035.WGS.T.UNK_kZ2yRAx.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM NA 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 hg38 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNK_kZ2yRAx This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +11LU035.WGS.T.UNK_kZ2yRAx 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM NA c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNK_kZ2yRAx Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +11LU035.WGS.T.UNK_kZ2yRAx.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM NA 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 hg38 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 sample_tag=UNK_kZ2yRAx Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters 11LU035.WXS.N 11LU035 LUAD WXS blood_normal CPT0034540002 CPT0034540002.WholeExome.RP-1303.bam 42687240835 BAM NA fc4c8b93-f6d9-4662-b524-66384d0666ed ac0049c8469d1f6adf872b0b9ed56c1a hg19 Blood Derived Normal 6b328a7b-2d97-4a02-8a6c-89f96a 11LU035.WXS.N.hg38 11LU035 LUAD WXS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 58600852881 BAM NA 7ac15e13-9ad5-43ec-9ab4-85844b7d218b ba6f9157169f002d0e08e52f9e8cadab hg38 Blood Derived Normal 6b328a7b-2d97-4a02-8a6c-89f96a 11LU035.WXS.T 11LU035 LUAD WXS tumor CPT0051690010 CPT0051690010.WholeExome.RP-1303.bam 27791488684 BAM NA 356fcdf9-26cc-449f-a484-19e036aa9101 cb7bd87e3a98b5152d636af9eb322240 hg19 Primary Tumor 2f2e5477-42a4-4906-a943-bf7f80 @@ -4392,10 +4392,10 @@ C3L-00907.WXS.T.HET_rp9PBB.hg38 C3L-00907 CCRCC WXS tumor CPT0064390009 4c8a309f C3L-00907.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 42988709588 BAM NA 5b8f478a-209f-47bc-893b-5d7302cd4f79 73e343702883bd9a89a67d572341d3a7 hg38 Primary Tumor C3L-00907-01 C3L-00908.MethArray.Green.A C3L-00908 CCRCC Methylation Array tissue_normal CPT0086370009 204930640120_R01C01_Grn.idat 13677885 IDAT Green f014e7c0-4c1b-4617-abe5-91ded63ed4bc e8759bfcc75666c3142c4c5f0cab1ecb NA Solid Tissue Normal C3L-00908-06 C3L-00908.MethArray.Green.T C3L-00908 CCRCC Methylation Array tumor CPT0086360009 202184900140_R04C01_Grn.idat 13676261 IDAT Green 098f45d0-13aa-4ca2-bffb-34c3a6cf0d5c 422f67f93dce0336fc874f8268f16de0 NA Primary Tumor C3L-00908-03 -C3L-00908.MethArray.Green.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed +C3L-00908.MethArray.Green.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00908.MethArray.Red.A C3L-00908 CCRCC Methylation Array tissue_normal CPT0086370009 204930640120_R01C01_Red.idat 13677885 IDAT Red a850babf-9a42-4309-9233-7b545bf65142 22dc71b942b4c69cbd329eeddaebca01 NA Solid Tissue Normal C3L-00908-06 C3L-00908.MethArray.Red.T C3L-00908 CCRCC Methylation Array tumor CPT0086360009 202184900140_R04C01_Red.idat 13676261 IDAT Red b3e7012a-66b0-4023-a59d-a89ceb1b3118 b9cacbd7ef67594fc80421d8902b71de NA Primary Tumor C3L-00908-03 -C3L-00908.MethArray.Red.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed +C3L-00908.MethArray.Red.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00908.miRNA-Seq.A C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L005_R1_001.unaln.bam 213873054 BAM NA 83df97b4-0757-4d5f-8698-cb7ea7a5feaf 64a1b3e4b04f3c60c019b96eb4768514 NA Solid Tissue Normal C3L-00908-06 C3L-00908.miRNA-Seq.A.hg38 C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 173c0d6a-bc67-4a72-b6d3-b2a411e24785_mirnaseq_gdc_realn.bam 243270795 BAM NA 7e41687b-c9d2-451f-bd6c-473cc0c58f3d a33bf2470cb149afc4d3515a6ce83eff hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.miRNA-Seq.T.RRNA_rokDXE C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L005_R1_001.unaln.bam 159592216 BAM NA c7baf5bf-ac47-4c48-8613-d1740624348a 918420f6333943bca22ee271d18db2a3 NA Primary Tumor C3L-00908-01 sample_tag=RRNA_rokDXE Duplicate item: Replacement RNA Distribution - original aliquot failed @@ -4421,16 +4421,16 @@ C3L-00908.WGS.N C3L-00908 CCRCC WGS blood_normal CPT0087380001 CPT0087380001.Who C3L-00908.WGS.N.hg38 C3L-00908 CCRCC WGS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 105491829001 BAM NA d439db67-28d0-4b23-acfb-e87f913d6ada 5176c8427cd82b2796bd0e61c6334fcc hg38 Blood Derived Normal C3L-00908-31 C3L-00908.WGS.T C3L-00908 CCRCC WGS tumor CPT0086360009 CPT0086360009.WholeGenome.RP-1303.bam 89053374471 BAM NA b501f200-b532-4a5c-b0f2-7f0ff1c6bd64 536341c7701d23e9c9334d1e55743944 hg19 Primary Tumor C3L-00908-03 C3L-00908.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 136492159740 BAM NA 4702b461-f88e-4036-87cd-c8fc4ee0b733 ed3f6a0865cdf184a800f7b9f5dfe402 hg38 Primary Tumor C3L-00908-03 -C3L-00908.WGS.T.UNK_ol2z7j C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM NA 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed -C3L-00908.WGS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM NA 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed +C3L-00908.WGS.T.UNK_ol2z7j C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM NA 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.WGS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM NA 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00908.WXS.A C3L-00908 CCRCC WXS tissue_normal CPT0086370009 CPT0086370009.WholeExome.RP-1303.bam 30544588614 BAM NA d4991d91-01ce-45a4-9b10-485aad476e6a b751d56da3f7b0ebb47da449ef7ed358 hg19 Solid Tissue Normal C3L-00908-06 C3L-00908.WXS.A.hg38 C3L-00908 CCRCC WXS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wxs_gdc_realn.bam 41542806405 BAM NA 07483db5-5911-49c3-ba62-ddbeb3f36763 a3f02afe2a04ad9f9a5262654dd86718 hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.WXS.N C3L-00908 CCRCC WXS blood_normal CPT0087380001 CPT0087380001.WholeExome.RP-1303.bam 30365609689 BAM NA 5e5c70f1-421b-455e-974a-a7f7782c2ddc d73d36afe6381f4b44e0561f695473a9 hg19 Blood Derived Normal C3L-00908-31 C3L-00908.WXS.N.hg38 C3L-00908 CCRCC WXS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 41730911569 BAM NA 9cf12b3e-3b97-4c25-ad51-d1eb46e5680d af151bc10b06cf1ddfa2b553fb3e4863 hg38 Blood Derived Normal C3L-00908-31 C3L-00908.WXS.T C3L-00908 CCRCC WXS tumor CPT0086360009 CPT0086360009.WholeExome.RP-1303.bam 29790261749 BAM NA f4f582bd-83a1-4d41-a4cb-8664d0d070a4 cd447af368efb58b7861fbbd2930fe80 hg19 Primary Tumor C3L-00908-03 C3L-00908.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 41321920933 BAM NA 7b0b6dc8-1437-4e91-a429-7bd9a48baa58 1f015c2e7f09eb87b9b567a4ac6bddc9 hg38 Primary Tumor C3L-00908-03 -C3L-00908.WXS.T.UNK_ol2z7j C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM NA 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed -C3L-00908.WXS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM NA c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed +C3L-00908.WXS.T.UNK_ol2z7j C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM NA 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.WXS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM NA c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot C3L-00910.MethArray.Green.A C3L-00910 CCRCC Methylation Array tissue_normal CPT0007870009 203027390029_R03C01_Grn.idat 13676246 IDAT Green ce7a64d5-0c3d-4257-beae-974cf92bb974 ec32b0d8c542bf62478b8eef6c75e8e3 NA Solid Tissue Normal C3L-00910-06 C3L-00910.MethArray.Green.T C3L-00910 CCRCC Methylation Array tumor CPT0007860009 202176290145_R03C01_Grn.idat 13676225 IDAT Green da68f598-4293-4596-a38d-f04ed4cac2f8 b48a389dd72389b89727940929a235bf NA Primary Tumor C3L-00910-02 C3L-00910.MethArray.Red.A C3L-00910 CCRCC Methylation Array tissue_normal CPT0007870009 203027390029_R03C01_Red.idat 13676246 IDAT Red 8a8605ac-fc32-4c40-bfa8-8f3df83d6a5b 47e4a67e542be95248284df8095e60f0 NA Solid Tissue Normal C3L-00910-06 @@ -4905,6 +4905,8 @@ C3L-00966.WXS.N C3L-00966 CCRCC WXS blood_normal CPT0100950002 CPT0100950002.Who C3L-00966.WXS.N.hg38 C3L-00966 CCRCC WXS blood_normal CPT0100950002 ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wxs_gdc_realn.bam 51799214449 BAM NA d73cde4d-17b5-44ea-9c2b-00e50d3f5f5b aea6f4df0abb2cc96ce503216d152fa2 hg38 Blood Derived Normal C3L-00966-31 C3L-00966.WXS.T C3L-00966 CCRCC WXS tumor CPT0101310009 CPT0101310009.WholeExome.RP-1303.bam 34346536786 BAM NA a876152a-33bb-42f0-b328-423dd2d625e8 fc2fbea8ca0dedf2d6b74e815c098c41 hg19 Primary Tumor C3L-00966-03 C3L-00966.WXS.T.hg38 C3L-00966 CCRCC WXS tumor CPT0101310009 f26c7002-5320-4a51-9f26-f8b0e703f019_wxs_gdc_realn.bam 46758625621 BAM NA c66a189e-1417-4892-8ef2-a8777f0cc796 2a839c653f2a1b0f696bfd16dbc4e7a9 hg38 Primary Tumor C3L-00966-03 +C3L-00967.miRNA-Seq.A C3L-00967 CM miRNA-Seq tissue_normal CPT0101550009 221118_UNC51-VH00562_156_AAAV2MKHV_CACGAT_S11_L001_R1_001.unaln.bam 621923728 BAM NA 90bf0da0-89a7-4cff-a976-e005b68b8f5a ab60e46f3e9035f79ef0d650ffed78cb NA Solid Tissue Normal C3L-00967-07 +C3L-00967.miRNA-Seq.T C3L-00967 CM miRNA-Seq tumor CPT0101530006 221111_UNC51-VH00562_151_AAATWY5HV_GCCAAT_S31_L001_R1_001.unaln.bam 297279736 BAM NA e5123012-09fa-4baf-9002-6e6ef6aad77f 5f6634eb318670dd539db7b2a9649fdb NA Primary Tumor C3L-00967-04 C3L-00968.MethArray.Green.A C3L-00968 CCRCC Methylation Array tissue_normal CPT0101740006 204930630034_R07C01_Grn.idat 13677885 IDAT Green 7f386d4e-ce25-45e9-aa74-91f3dcb315a5 6068d83f77bc233919ac522ca5b4e700 NA Solid Tissue Normal C3L-00968-07 C3L-00968.MethArray.Green.T C3L-00968 CCRCC Methylation Array tumor CPT0101710009 202234380099_R03C01_Grn.idat 13676231 IDAT Green 5a8536f4-7a02-40f6-9acf-90db94685872 dad4ce7ce307f69f1356214c6bffdb3d NA Primary Tumor C3L-00968-04 C3L-00968.MethArray.Red.A C3L-00968 CCRCC Methylation Array tissue_normal CPT0101740006 204930630034_R07C01_Red.idat 13677885 IDAT Red fc7b2404-e518-495b-bfd8-c9d2e72d2c43 5e24a94e8b9543da8ae37f67573ab6e7 NA Solid Tissue Normal C3L-00968-07 @@ -5200,6 +5202,7 @@ C3L-00987.WXS.N C3L-00987 HNSCC WXS blood_normal CPT0128500002 CPT0128500002.Who C3L-00987.WXS.N.hg38 C3L-00987 HNSCC WXS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wxs_gdc_realn.bam 59934678432 BAM NA 69927b12-f3d1-44d7-a4fe-4e1105cdac23 68ee17686267d946611526456be307c9 hg38 Blood Derived Normal C3L-00987-31 C3L-00987.WXS.T C3L-00987 HNSCC WXS tumor CPT0127050006 CPT0127050006.WholeExome.RP-1303.bam 22898854690 BAM NA a9481942-2d76-49d4-8068-98f2bae38cfa fe4e343a442518a519bcb901b0a8283e hg19 Primary Tumor C3L-00987-01 C3L-00987.WXS.T.hg38 C3L-00987 HNSCC WXS tumor CPT0127050006 eb51741c-873e-42b7-98a1-79136ea048eb_wxs_gdc_realn.bam 31616417280 BAM NA f3505d85-c1c5-417f-b519-7be074af6657 e60cbc524e7db36da85fa50ad3c7464f hg38 Primary Tumor C3L-00987-01 +C3L-00989.miRNA-Seq.T C3L-00989 CM miRNA-Seq tumor CPT0122890009 221111_UNC51-VH00562_151_AAATWY5HV_ATGTCA_S8_L001_R1_001.unaln.bam 354023845 BAM NA b1c73a2c-a150-423b-95c3-994dae4a1374 900312c3bdcfff525e8c7173c33d3fd5 NA Primary Tumor C3L-00989-03 C3L-00991.MethArray.Green.A C3L-00991 CCRCC Methylation Array tissue_normal CPT0123030006 204930640122_R08C01_Grn.idat 13677965 IDAT Green 562edd46-4d7e-49fe-9c9b-76db95b72d28 8170d4463d074a7b8e55c2415122c8d0 NA Solid Tissue Normal C3L-00991-06 C3L-00991.MethArray.Green.T C3L-00991 CCRCC Methylation Array tumor CPT0122990009 203219650174_R03C01_Grn.idat 13676216 IDAT Green b20f069a-a02f-4de8-a009-6a81b3192967 9f1bcb9ca2699ce2962c8af2a724d6e7 NA Primary Tumor C3L-00991-01 C3L-00991.MethArray.Red.A C3L-00991 CCRCC Methylation Array tissue_normal CPT0123030006 204930640122_R08C01_Red.idat 13677965 IDAT Red 3e21cad3-46c4-4e30-b09c-3a914acb7ead 54323a405c5ee78990d81cf72603550d NA Solid Tissue Normal C3L-00991-06 @@ -5826,6 +5829,8 @@ C3L-01061.WXS.N C3L-01061 GBM WXS blood_normal CPT0220160002 CPT0220160002.Whole C3L-01061.WXS.N.hg38 C3L-01061 GBM WXS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wxs_gdc_realn.bam 35226033324 BAM NA 9b3f0c7a-b5b0-4a5c-b40e-303d858ed6a6 0dd8b4e03f99e59104965424ec149a35 hg38 Blood Derived Normal C3L-01061-31 C3L-01061.WXS.T C3L-01061 GBM WXS tumor CPT0217710011 CPT0217710011.WholeExome.RP-1303.bam 29621741414 BAM NA cb28d084-86fb-40f1-91e8-f7db9e0e7fe0 63c48def84921d989f8ef65f5befd9ed hg19 Primary Tumor C3L-01061-01,C3L-01061-02 C3L-01061.WXS.T.hg38 C3L-01061 GBM WXS tumor CPT0217710011 dff6198d-3541-426b-b894-d26b18d87c23_wxs_gdc_realn.bam 41045036469 BAM NA dc60f5d5-fa33-4c3a-87b3-11225a35871f e7b66def080d57f285cf968d428d6fc3 hg38 Primary Tumor C3L-01061-01,C3L-01061-02 +C3L-01063.miRNA-Seq.A C3L-01063 CM miRNA-Seq tissue_normal CPT0199650008 221117_UNC51-VH00562_155_AAAVL2YHV_ATCACG_S6_L001_R1_001.unaln.bam 185118785 BAM NA 69c4d46c-ef09-4926-a8fa-2f123810d776 1dc002f51da37630f260595fc7f3ddae NA Solid Tissue Normal C3L-01063-06 +C3L-01063.miRNA-Seq.T C3L-01063 CM miRNA-Seq tumor CPT0199640009 221111_UNC51-VH00562_151_AAATWY5HV_CTCAGA_S26_L001_R1_001.unaln.bam 300086785 BAM NA 1e1882b0-b6bf-43b0-a1e6-a92fda5954b0 76e50081218600f17665e62903d94234 NA Primary Tumor C3L-01063-03 C3L-01064.MethArray.Green.T C3L-01064 UCEC Methylation Array tumor CPT0113430010 203219670147_R04C01_Grn.idat 13676236 IDAT Green 3b1735a5-8976-4fd5-a76d-6bab9d764a88 23e3079cd6fac67e96e012c76cdd90c5 NA Primary Tumor C3L-01064-01,C3L-01064-02 C3L-01064.MethArray.Red.T C3L-01064 UCEC Methylation Array tumor CPT0113430010 203219670147_R04C01_Red.idat 13676236 IDAT Red 1bcb2750-06d0-4b20-b9ba-135877abc877 45bd52288486e8f805c4661c007e4abd NA Primary Tumor C3L-01064-01,C3L-01064-02 C3L-01064.miRNA-Seq.T C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L002_R1_001.unaln.bam 264217578 BAM NA 05a6be11-eb40-49fb-9115-826064a9a5a6 e451c65b34491d3ac145d728ae990dfa NA Primary Tumor C3L-01064-01,C3L-01064-02 @@ -6873,7 +6878,7 @@ C3L-01295.WGS.Nbc.hg38 C3L-01295 AML WGS buccal_normal CPT0099640002 d594d3a4-c3 C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 CPT0099560002_1.WholeGenome.RP-1303.bam 68763622262 BAM NA 078f15a6-9fab-4bb8-9138-0e57a1759319 31554b889b5d9f6db6d8dc43edf9eb87 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-01295-54 C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeGenome.RP-1303.bam 23922175268 BAM NA a049a44a-1bf7-4741-bc21-66ace36d90a6 be7f66ebb2ca2193bc197fcebbe7a969 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-01295-54 C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 3205a569-ab23-4c2e-9e2f-1a47c4450295_wgs_gdc_realn.bam 99827023129 BAM NA 89be8230-404f-41ec-8b81-c223f12201bd 1934411b7a3ea1c44764c0a3b4baa616 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-01295-54 -C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wgs_gdc_realn.bam 34126293284 BAM NA 5d51ea11-528e-49dc-8ffd-d1b6f4d15a59 e165039de7a40b065eee395a87321bdb hg38 Primary Blood Derived Cancer - Bone Marrow C3L-01295-54 +C3L-01295.WGS.Tbm.hg38WGS C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wgs_gdc_realn.bam 34126293284 BAM NA 5d51ea11-528e-49dc-8ffd-d1b6f4d15a59 e165039de7a40b065eee395a87321bdb hg38 Primary Blood Derived Cancer - Bone Marrow C3L-01295-54 local_meta=WGS C3L-01295.WXS.Nbc C3L-01295 AML WXS buccal_normal CPT0099640002 CPT0099640002.WholeExome.RP-1303.bam 22563264860 BAM NA 2c75c437-a748-4e8d-a82a-900eec51eaf3 b1a2289886dd037e8573b9e3b2d510b2 hg19 Buccal Cell Normal C3L-01295-51,C3L-01295-52,C3L-01295-53 C3L-01295.WXS.Nbc.hg38 C3L-01295 AML WXS buccal_normal CPT0099640002 d594d3a4-c362-45a5-9283-92b99a78469d_wxs_gdc_realn.bam 32074188187 BAM NA c0286d1a-54de-4aa6-a763-290c5d4d7436 23b1f0fe6698e6280e7a1a7ca5a49b91 hg38 Buccal Cell Normal C3L-01295-51,C3L-01295-52,C3L-01295-53 C3L-01295.WXS.Tbm C3L-01295 AML WXS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeExome.RP-1303.bam 23922175342 BAM NA 66c7f637-442c-4825-9596-fb054bf01e2e 953adbe6cbbd02bad0fe404a477483ad hg19 Primary Blood Derived Cancer - Bone Marrow C3L-01295-54 @@ -8299,7 +8304,7 @@ C3L-01696.RNA-Seq.transcriptome.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003_1 CPT0166350003_1.WholeGenome.RP-1303.bam 69838458599 BAM NA a4410206-057d-44ce-9819-37f992dfbdfb 7250d270ad5940fcedf44e80eac90df6 hg19 Buccal Cell Normal C3L-01696-51,C3L-01696-52,C3L-01696-53 C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003 CPT0166350003.WholeGenome.RP-1303.bam 21981937874 BAM NA de97474c-7074-43bd-a1f8-e98800f27ada dca8f62c04ec10e9985a6ef1fe3cc710 hg19 Buccal Cell Normal C3L-01696-51,C3L-01696-52,C3L-01696-53 C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003_1 062dc65b-0cfc-4f1d-b5f4-64bff4bbc805_wgs_gdc_realn.bam 101206605126 BAM NA 75f30131-c76d-41f4-aeca-63d39aa3215b 0479455432fb8e7bec43c5651e775fa3 hg38 Buccal Cell Normal C3L-01696-51,C3L-01696-52,C3L-01696-53 -C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wgs_gdc_realn.bam 30140254960 BAM NA 19666272-672e-45f8-98e1-10baefb2e231 80ff1d5bae4c11a6f21909f953dfded1 hg38 Buccal Cell Normal C3L-01696-51,C3L-01696-52,C3L-01696-53 +C3L-01696.WGS.Nbc.hg38WGS C3L-01696 AML WGS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wgs_gdc_realn.bam 30140254960 BAM NA 19666272-672e-45f8-98e1-10baefb2e231 80ff1d5bae4c11a6f21909f953dfded1 hg38 Buccal Cell Normal C3L-01696-51,C3L-01696-52,C3L-01696-53 local_meta=WGS C3L-01696.WGS.Tbm C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 CPT0166290002.WholeGenome.RP-1303.bam 84446246342 BAM NA 7c30eb6a-4f4c-40fa-8565-27f50456a49c c9e6d9ca88f0cf06605b35a2e5cf0b05 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-01696-54 C3L-01696.WGS.Tbm.hg38 C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 eeae1365-1d8d-4397-b2ba-bf7aae4883ae_wgs_gdc_realn.bam 123011651132 BAM NA 30772786-a9c8-40f0-b5c8-1853d6bd440b 86dd95f30662cdf418e4e48bf27fbf5a hg38 Primary Blood Derived Cancer - Bone Marrow C3L-01696-54 C3L-01696.WXS.Nbc C3L-01696 AML WXS buccal_normal CPT0166350003 CPT0166350003.WholeExome.RP-1303.bam 21981937940 BAM NA 8faf9d47-a91d-42ec-835f-d32440ce8abd 7823453d1082dd3ae3d5cf43a587aca5 hg19 Buccal Cell Normal C3L-01696-51,C3L-01696-52,C3L-01696-53 @@ -9330,6 +9335,7 @@ C3L-02041.WXS.N C3L-02041 GBM WXS blood_normal CPT0124240002 CPT0124240002.Whole C3L-02041.WXS.N.hg38 C3L-02041 GBM WXS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wxs_gdc_realn.bam 43967043277 BAM NA f9e7a4d9-9f89-495b-9db9-502200a26d09 96f8add96545e56f76e69cf5acf546ea hg38 Blood Derived Normal C3L-02041-31 C3L-02041.WXS.T C3L-02041 GBM WXS tumor CPT0125510009 CPT0125510009.WholeExome.RP-1303.bam 40627967636 BAM NA bc28db96-ebdf-4abd-b7ef-eae25253aa77 b878d73dab800cfca228b98e37bea62e hg19 Primary Tumor C3L-02041-02 C3L-02041.WXS.T.hg38 C3L-02041 GBM WXS tumor CPT0125510009 e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wxs_gdc_realn.bam 55570315591 BAM NA b9073c62-2ed2-4bfe-8ecc-154068508194 460ea9bafc0811bfa41a621332f18a6d hg38 Primary Tumor C3L-02041-02 +C3L-02102.miRNA-Seq.T C3L-02102 CM miRNA-Seq tumor CPT0168930009 221111_UNC51-VH00562_151_AAATWY5HV_CACTCA_S14_L001_R1_001.unaln.bam 456413203 BAM NA a968bddd-aee6-4a9a-ae84-237f1debcb69 1cd2fa2ef8d5caa5b0c7b567ac9f86e6 NA Primary Tumor C3L-02102-02 C3L-02109.MethArray.Green.T C3L-02109 PDA Methylation Array tumor CPT0109010010 203028200014_R07C01_Grn.idat 13676226 IDAT Green dfb41a80-435f-4a0a-9645-d0bd560b9f4e 78938de5ed3e11063e914ff9e482325c NA Primary Tumor C3L-02109-02,C3L-02109-03 C3L-02109.MethArray.Red.T C3L-02109 PDA Methylation Array tumor CPT0109010010 203028200014_R07C01_Red.idat 13676226 IDAT Red bd0493ee-c227-4a7a-996c-786526f7918d 1fb3ed571fbe29a95efb4aacde8f7804 NA Primary Tumor C3L-02109-02,C3L-02109-03 C3L-02109.miRNA-Seq.T C3L-02109 PDA miRNA-Seq tumor CPT0109010007 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L004_R1_001.unaln.bam 220206075 BAM NA 714a8d2c-00e4-41f2-b7ab-97e83963f5e4 b5e95c879717e9cf666c94d8a6c1f66a NA Primary Tumor C3L-02109-02,C3L-02109-03 @@ -9622,7 +9628,7 @@ C3L-02132.WGS.Nbc.hg38 C3L-02132 AML WGS buccal_normal CPT0166490003 baa4fc21-86 C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 CPT0166390002_1.WholeGenome.RP-1303.bam 69862755075 BAM NA 520e8c0a-2acb-4f74-8f27-2a4fa497a7af 493a63ed96e40162b986c089eb4bee69 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-02132-54 C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeGenome.RP-1303.bam 26137683857 BAM NA 37fa043b-64db-419d-8042-713e5097c910 01452d76f9db936e33ba2d56ed65e014 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-02132-54 C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 3de89c45-6ec1-4509-b9e8-6a3e8d874eac_wgs_gdc_realn.bam 103302272675 BAM NA 78c5577f-05e9-46c6-9376-5ee607145665 0c7c44a8f580fa2bc655edd3300fc34f hg38 Primary Blood Derived Cancer - Bone Marrow C3L-02132-54 -C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wgs_gdc_realn.bam 35974705542 BAM NA 85d7287e-1a59-4f46-bb72-b244838ff573 b1f45d0b0240723de5c84c101a51eb53 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-02132-54 +C3L-02132.WGS.Tbm.hg38WGS C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wgs_gdc_realn.bam 35974705542 BAM NA 85d7287e-1a59-4f46-bb72-b244838ff573 b1f45d0b0240723de5c84c101a51eb53 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-02132-54 local_meta=WGS C3L-02132.WXS.Nbc C3L-02132 AML WXS buccal_normal CPT0166490003 CPT0166490003.WholeExome.RP-1303.bam 25321497026 BAM NA 2615c697-f758-4edf-96f4-2fd271a22c61 1f388eb31ac56025f506c6ed2f8f4646 hg19 Buccal Cell Normal C3L-02132-51,C3L-02132-52,C3L-02132-53 C3L-02132.WXS.Nbc.hg38 C3L-02132 AML WXS buccal_normal CPT0166490003 baa4fc21-86c9-493d-bf8c-a097720cf807_wxs_gdc_realn.bam 35166611065 BAM NA 944c53f5-4f80-46ae-ac76-fed39b14b783 9bb72d1a9bc4d15b711981a43ce2f859 hg38 Buccal Cell Normal C3L-02132-51,C3L-02132-52,C3L-02132-53 C3L-02132.WXS.Tbm C3L-02132 AML WXS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeExome.RP-1303.bam 26137683925 BAM NA bb0efc8a-b390-4dbe-a702-4db8d43478f1 0697527e15187d152852d71d0e409886 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-02132-54 @@ -10526,8 +10532,8 @@ C3L-02365.WGS.N C3L-02365 LUAD WGS blood_normal CPT0116900002 CPT0116900002.Whol C3L-02365.WGS.N.hg38 C3L-02365 LUAD WGS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wgs_gdc_realn.bam 92748330856 BAM NA 5a832acb-f0ed-4bac-b73b-fe54daf62b1a ca29d9b33198612cfe8a9b6a0d601ea5 hg38 Blood Derived Normal C3L-02365-31 C3L-02365.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009 CPT0114840009.WholeGenome.RP-1303.bam 55967118343 BAM NA 606c007e-32a3-485a-847f-cc691d1bb307 9eeb3954ef1adc9ca465f82600d214b5 hg19 Primary Tumor C3L-02365-01 C3L-02365.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wgs_gdc_realn.bam 82750501676 BAM NA cbafe4ae-36af-4011-9ce8-0ea290c6373b 95a7a0c9c06fa948b7980da609e08a47 hg38 Primary Tumor C3L-02365-01 -C3L-02365.WGS.T.UNK_mYLkk1O C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM NA 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 hg19 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot -C3L-02365.WGS.T.UNK_mYLkk1O.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM NA 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae hg38 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3L-02365.WGS.T.UNK_mYLkk1O C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM NA 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 hg19 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3L-02365.WGS.T.UNK_mYLkk1O.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM NA 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae hg38 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters C3L-02365.WXS.A C3L-02365 LUAD WXS tissue_normal CPT0114880006 CPT0114880006.WholeExome.RP-1303.bam 33401060054 BAM NA b18e30e0-41f5-4761-812f-93a1f6a02b41 dec941d8db572fa44e2c2b6de58aefa0 hg19 Solid Tissue Normal C3L-02365-05 C3L-02365.WXS.A.hg38 C3L-02365 LUAD WXS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wxs_gdc_realn.bam 44834783361 BAM NA e57292ba-138c-4fda-bd41-6f45f211a0a2 c48da16cddcf07720d88d28edfd96d37 hg38 Solid Tissue Normal C3L-02365-05 C3L-02365.WXS.N C3L-02365 LUAD WXS blood_normal CPT0116900002 CPT0116900002.WholeExome.RP-1303.bam 34586669883 BAM NA d083462b-4a5e-40a6-b8a3-847eb89baac8 bb1f95584ad9665e15e79c7415b45950 hg19 Blood Derived Normal C3L-02365-31 @@ -11563,6 +11569,7 @@ C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007 CPT0124610007.WholeExome.R C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007 77d62c85-36de-4df8-869f-e652588bcf8a_wxs_gdc_realn.bam 38712293216 BAM NA 4e26c6a2-f913-410a-9f9e-afb274c0d487 72531e47a34f77794f8b495ba31ebe0a hg38 Primary Tumor C3L-02613-02,C3L-02613-03 C3L-02613.WXS.T.hg38.high_cov C3L-02613 PDA WXS tumor CPT0124610007_1 db70cb1d-4e2d-4341-98d3-4aea5e5ea3ca_wxs_gdc_realn.bam 83419348043 BAM NA 715898e2-7575-4a70-8b17-60d4e123d99c 506786c9172edaad3da89cea514f6c75 hg38 Primary Tumor C3L-02613-03 local_meta=.high_cov C3L-02613.WXS.T.high_cov C3L-02613 PDA WXS tumor CPT0124610007_1 CPT0124610007_1.WholeExome.RP-1303.bam 61317612855 BAM NA 2cd31d82-8288-430a-be3f-6fa1e7e0fe25 fc21b16c4712b486e793f650393923a0 hg19 Primary Tumor C3L-02613-03 local_meta=.high_cov +C3L-02615.miRNA-Seq.T C3L-02615 CM miRNA-Seq tumor CPT0228340010 221117_UNC51-VH00562_155_AAAVL2YHV_AGTTCC_S5_L001_R1_001.unaln.bam 394201655 BAM NA e7bdff62-afe4-4dd1-919c-5d83f2ebf8ec 689c3a0c495f3a0fb1c96245b3c6687a NA Primary Tumor C3L-02615-02,C3L-02615-03,C3L-02615-04,C3L-02615-05 C3L-02616.MethArray.Green.A C3L-02616 LUAD Methylation Array tissue_normal CPT0192250006 203219650136_R04C01_Grn.idat 13676236 IDAT Green f8a09345-9367-4afc-a614-35a6cbaa56db ded388a7d659aaf297d0a5f5f03e57cd NA Solid Tissue Normal C3L-02616-06 C3L-02616.MethArray.Green.T C3L-02616 LUAD Methylation Array tumor CPT0192240006 203219720211_R04C01_Grn.idat 13676245 IDAT Green 65abfd21-97b4-4c01-9503-00df09c9eedc 6975f38ca3b1986b1abae6b1f018f7f3 NA Primary Tumor C3L-02616-05 C3L-02616.MethArray.Red.A C3L-02616 LUAD Methylation Array tissue_normal CPT0192250006 203219650136_R04C01_Red.idat 13676236 IDAT Red 1d3e1816-32a3-46ea-8960-dc69b204aa48 bdbb6c97932fb7e15c630e89a417e626 NA Solid Tissue Normal C3L-02616-06 @@ -11714,6 +11721,8 @@ C3L-02621.WXS.N C3L-02621 HNSCC WXS blood_normal CPT0201970002 CPT0201970002.Who C3L-02621.WXS.N.hg38 C3L-02621 HNSCC WXS blood_normal CPT0201970002 02f60b7f-627c-467f-82d6-b766f213c238_wxs_gdc_realn.bam 39020161451 BAM NA fd50b411-9585-42dc-adbb-a6dcaed253ad 050923e3eded89b5c26a0a3c0984093a hg38 Blood Derived Normal C3L-02621-31 C3L-02621.WXS.T C3L-02621 HNSCC WXS tumor CPT0201830007 CPT0201830007.WholeExome.RP-1303.bam 24957617938 BAM NA 9e30c2a0-7698-42e7-9dcc-da1f0bcccef3 d53a7b6472641aff9f4c096376ec9d71 hg19 Primary Tumor C3L-02621-01,C3L-02621-02,C3L-02621-03 C3L-02621.WXS.T.hg38 C3L-02621 HNSCC WXS tumor CPT0201830007 4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wxs_gdc_realn.bam 34462296906 BAM NA cdabe1b1-bec3-4fc9-9d68-adb41cf03a19 abfc7d8396ae1caabbb71edb962b3023 hg38 Primary Tumor C3L-02621-01,C3L-02621-02,C3L-02621-03 +C3L-02622.miRNA-Seq.A C3L-02622 CM miRNA-Seq tissue_normal CPT0202910011 221117_UNC51-VH00562_155_AAAVL2YHV_GTCCGC_S35_L001_R1_001.unaln.bam 382911247 BAM NA 29bc9e07-0d03-4009-9e37-339b1f7048fd f7ce6432c82877a729e26de269491cd4 NA Solid Tissue Normal C3L-02622-06,C3L-02622-08,C3L-02622-09 +C3L-02622.miRNA-Seq.T C3L-02622 CM miRNA-Seq tumor CPT0202860010 221111_UNC51-VH00562_151_AAATWY5HV_TCCCGA_S44_L001_R1_001.unaln.bam 391940465 BAM NA 04b5171e-a4e7-4f52-9e39-7e1cd1c5523c 104cd2346c3fcaa4683b290364e4ab47 NA Primary Tumor C3L-02622-01,C3L-02622-03 C3L-02624.MethArray.Green.A C3L-02624 LSCC Methylation Array tissue_normal CPT0227070006 203219670117_R05C01_Grn.idat 13676226 IDAT Green d70d0285-26a9-4267-b68d-b1ad8edd7a6e a7253c9e661061dec9ba08cbe08d6a14 NA Solid Tissue Normal C3L-02624-07 C3L-02624.MethArray.Green.T C3L-02624 LSCC Methylation Array tumor CPT0227020006 203219670106_R05C01_Grn.idat 13676241 IDAT Green 81f1f759-5301-479d-bcfe-56722228c718 1dce7b4195732e54989e0d6f20f95d8d NA Primary Tumor C3L-02624-02 C3L-02624.MethArray.Red.A C3L-02624 LSCC Methylation Array tissue_normal CPT0227070006 203219670117_R05C01_Red.idat 13676226 IDAT Red cc38e3ac-6db8-4c33-93db-3ee6123cc8db 97afcd65f3e933e93a8dc4f4c4d151e9 NA Solid Tissue Normal C3L-02624-07 @@ -11913,6 +11922,7 @@ C3L-02646.WXS.N C3L-02646 LSCC WXS blood_normal CPT0202660002 CPT0202660002.Whol C3L-02646.WXS.N.hg38 C3L-02646 LSCC WXS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wxs_gdc_realn.bam 23162153244 BAM NA 3ec28d87-2158-4bc0-a3b4-7a1c7d9baff8 bdcdaef801ccf6563b046b15cc9afc25 hg38 Blood Derived Normal C3L-02646-31 C3L-02646.WXS.T C3L-02646 LSCC WXS tumor CPT0202530007 CPT0202530007.WholeExome.RP-1303.bam 19663876599 BAM NA 7346604b-0377-403f-99d9-b26515e55d25 c479fd855a2233f4927c6268589afaf3 hg19 Primary Tumor C3L-02646-01,C3L-02646-05 C3L-02646.WXS.T.hg38 C3L-02646 LSCC WXS tumor CPT0202530007 ffb7f59b-2554-45af-a0be-67a3c8c475e0_wxs_gdc_realn.bam 26923683521 BAM NA b8b6ee6f-d4e3-40b6-926f-aa52eaa5189d 3724766e5a532e4ac4fb645a19181aaf hg38 Primary Tumor C3L-02646-01,C3L-02646-05 +C3L-02647.miRNA-Seq.T C3L-02647 CM miRNA-Seq tumor CPT0193080010 221111_UNC51-VH00562_151_AAATWY5HV_GACGAC_S28_L001_R1_001.unaln.bam 409800550 BAM NA 3659db8a-edd5-438c-886f-73bfdef5684e 1d4564183ffe61462501863505b0c402 NA Primary Tumor C3L-02647-01,C3L-02647-02,C3L-02647-03,C3L-02647-04 C3L-02648.MethArray.Green.A C3L-02648 LSCC Methylation Array tissue_normal CPT0204660006 203219650211_R04C01_Grn.idat 13676236 IDAT Green 0c9bf495-bc88-4663-9748-bfc14e04a032 0dde143ef8afc5085a83fce1b3d0ab0d NA Solid Tissue Normal C3L-02648-08 C3L-02648.MethArray.Green.T C3L-02648 LSCC Methylation Array tumor CPT0204600010 203219650100_R05C01_Grn.idat 13676221 IDAT Green 878c0113-50fe-4e8a-b648-1c9a5145a4a1 6d77e53d08c5db073ddef04fa58eea1c NA Primary Tumor C3L-02648-02 C3L-02648.MethArray.Red.A C3L-02648 LSCC Methylation Array tissue_normal CPT0204660006 203219650211_R04C01_Red.idat 13676236 IDAT Red 687a598e-a09c-48d2-be22-24a5ebd6705f 646a513edc1e42f6f712eddb25d771b2 NA Solid Tissue Normal C3L-02648-08 @@ -13519,11 +13529,11 @@ C3L-03308.RNA-Seq.transcriptome.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002_1 CPT0201630002_1.WholeGenome.RP-1303.bam 68138136147 BAM NA bc8e886d-54bf-4641-accb-ebbf1ad63d9c 807e2c69cd4858371a6492c2c238e589 hg19 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002 CPT0201630002.WholeGenome.RP-1303.bam 24596099382 BAM NA 85acc293-6c11-497e-8049-76327f5ec0b0 e0bb0b766ab2ef44625e416031dd9864 hg19 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002_1 476f0761-cd64-4f7e-bad6-db1a1d997d02_wgs_gdc_realn.bam 95794248461 BAM NA 3f006696-9c85-46f6-80cb-a65dd4242e8f 595bbdab35a6b3ea7987bb2ba85d5d38 hg38 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 -C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wgs_gdc_realn.bam 33707667964 BAM NA 443cebb5-a542-4866-9e67-df805b839012 45247c1120bcbd60c050145d4841a1bf hg38 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 +C3L-03308.WGS.Nbc.hg38WGS C3L-03308 AML WGS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wgs_gdc_realn.bam 33707667964 BAM NA 443cebb5-a542-4866-9e67-df805b839012 45247c1120bcbd60c050145d4841a1bf hg38 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 local_meta=WGS C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 CPT0201550002_1.WholeGenome.RP-1303.bam 80526632719 BAM NA 45ce3ee1-1993-4b8b-a694-4c00f90d8c79 fd0e933949c6bc9b1f300317268d9e31 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeGenome.RP-1303.bam 23177226613 BAM NA 831dd319-1f30-4547-b465-65f33299a36c 7ed4ffb7d9bb11d532084d0efeaf558c hg19 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 -C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wgs_gdc_realn.bam 32052472043 BAM NA 0853efaa-8886-4b5c-96ce-547b63abbc8f 2b6f623f6d8a4f0da4fa1ec56d040503 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 73edd824-ca93-4839-a578-85e319e4b18c_wgs_gdc_realn.bam 117015182430 BAM NA 25391a83-7490-48ab-983b-d9df97c1b398 8ea94993ecee621d3feb238ed6a808a5 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 +C3L-03308.WGS.Tbm.hg38WGS C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wgs_gdc_realn.bam 32052472043 BAM NA 0853efaa-8886-4b5c-96ce-547b63abbc8f 2b6f623f6d8a4f0da4fa1ec56d040503 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 local_meta=WGS C3L-03308.WXS.Nbc C3L-03308 AML WXS buccal_normal CPT0201630002 CPT0201630002.WholeExome.RP-1303.bam 24596099450 BAM NA 5c350146-7466-48a4-949f-f570df1aa3e1 1888a9762a880130611a0180727800d1 hg19 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 C3L-03308.WXS.Nbc.hg38 C3L-03308 AML WXS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wxs_gdc_realn.bam 33863986000 BAM NA 9ea0ec47-41c9-4b2e-badb-ccfd4979751a 54d599e0a52fac7f3ba86f66a57866be hg38 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 C3L-03308.WXS.Tbm C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeExome.RP-1303.bam 23177226677 BAM NA 89398d58-6aff-4b44-aee1-b4a1be711054 8a7eae1f421b9e4cc549887e7d14af57 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 @@ -13589,6 +13599,12 @@ C3L-03356.WXS.N C3L-03356 PDA WXS blood_normal CPT0198450002 CPT0198450002.Whole C3L-03356.WXS.N.hg38 C3L-03356 PDA WXS blood_normal CPT0198450002 78376e37-140d-4c03-a35f-64b8ec950598_wxs_gdc_realn.bam 28372322137 BAM NA bf6fe2a5-f454-42ea-93d0-d11496684867 075810bb6a5b34b093708b0b45362126 hg38 Blood Derived Normal C3L-03356-31 C3L-03356.WXS.T.hg38.high_cov C3L-03356 PDA WXS tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_wxs_gdc_realn.bam 77207880644 BAM NA a0bb9942-5291-4181-a01d-2cdd31ee6c8b 2bcd08ba2a12dd5eec3cfc317c2b74b1 hg38 Primary Tumor C3L-03356-02 local_meta=.high_cov C3L-03356.WXS.T.high_cov C3L-03356 PDA WXS tumor CPT0198420007 CPT0198420007.WholeExome.RP-1303.bam 55677693404 BAM NA 6a9c3d44-a585-46df-a16a-7e5908ac5866 47054d87506eeb8f143645e8946879c6 hg19 Primary Tumor C3L-03356-02 local_meta=.high_cov +C3L-03362.miRNA-Seq.A C3L-03362 CM miRNA-Seq tissue_normal CPT0284740011 221109_UNC51-VH00562_149_AAAV5CLHV_CGTACG_S23_L001_R1_001.unaln.bam 387492883 BAM NA e85a6c81-8c62-4983-b8f0-673f7e21f6b2 f031622950a8672e3f22d67d721154cb NA Solid Tissue Normal C3L-03362-10 +C3L-03362.miRNA-Seq.T C3L-03362 CM miRNA-Seq tumor CPT0284730009 221109_UNC51-VH00562_149_AAAV5CLHV_TGACCA_S47_L001_R1_001.unaln.bam 412054550 BAM NA 99e8ec69-c141-452f-9e15-488ac67b95e5 f761ad828a9ce12b1db9b684a7769249 NA Primary Tumor C3L-03362-05 +C3L-03364.miRNA-Seq.A C3L-03364 CM miRNA-Seq tissue_normal CPT0284980008 221109_UNC51-VH00562_149_AAAV5CLHV_ATGTCA_S8_L001_R1_001.unaln.bam 411093870 BAM NA 7c760578-a425-4b78-934d-4e4088eb6741 1a745367b0590404f3c90b08391d8778 NA Solid Tissue Normal C3L-03364-10 +C3L-03364.miRNA-Seq.T C3L-03364 CM miRNA-Seq tumor CPT0284960009 221109_UNC51-VH00562_149_AAAV5CLHV_ACAGTG_S1_L001_R1_001.unaln.bam 383734029 BAM NA 700d0b62-be40-434d-aa60-f6ac668b85d0 021e8757b73237f3f18dd5e96aa53bf9 NA Primary Tumor C3L-03364-02 +C3L-03367.miRNA-Seq.A C3L-03367 CM miRNA-Seq tissue_normal CPT0239710006 221117_UNC51-VH00562_155_AAAVL2YHV_CAAAAG_S10_L001_R1_001.unaln.bam 475911772 BAM NA c8229522-a859-4ea6-a602-b67715177698 da83b83b5d6e941bc700d826d0b7c9ad NA Solid Tissue Normal C3L-03367-02 +C3L-03367.miRNA-Seq.T C3L-03367 CM miRNA-Seq tumor CPT0239700009 221117_UNC51-VH00562_155_AAAVL2YHV_GTTTCG_S38_L001_R1_001.unaln.bam 320508347 BAM NA 82731ff7-cec0-466f-8f29-2b549d26d23d f637743056f4650551a1fd332188bf0a NA Primary Tumor C3L-03367-01 C3L-03371.MethArray.Green.A C3L-03371 PDA Methylation Array tissue_normal CPT0275880006 203561620086_R08C01_Grn.idat 13676236 IDAT Green 7a042bdb-d1bf-41ab-8fca-ed336cbb2974 e08e698690f1c4451d4ed22d7dc078db NA Solid Tissue Normal C3L-03371-05 C3L-03371.MethArray.Green.T C3L-03371 PDA Methylation Array tumor CPT0275870006 203561450018_R06C01_Grn.idat 13676216 IDAT Green e14cb9cd-570c-4145-ae3f-02f9f0981332 842cda824b92d0f0a7fdce2b92794083 NA Primary Tumor C3L-03371-04 C3L-03371.MethArray.Red.A C3L-03371 PDA Methylation Array tissue_normal CPT0275880006 203561620086_R08C01_Red.idat 13676236 IDAT Red e4bb1a5d-7db1-4b58-96fa-6bc7ca72575a 0b5139a6bee5557fa7be9e062bbc4d43 NA Solid Tissue Normal C3L-03371-05 @@ -13629,6 +13645,10 @@ C3L-03372.WXS.N C3L-03372 GBM WXS blood_normal CPT0265940002 CPT0265940002.Whole C3L-03372.WXS.N.hg38 C3L-03372 GBM WXS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wxs_gdc_realn.bam 29617153769 BAM NA 232df735-b856-4f31-840a-0e28d746748a 136569dab8570fd707f335939ea98076 hg38 Blood Derived Normal C3L-03372-31 C3L-03372.WXS.T C3L-03372 GBM WXS tumor CPT0275960006 CPT0275960006.WholeExome.RP-1303.bam 20594156903 BAM NA 7ffb97bc-1694-49bb-aa91-9bdccd83d539 199d2579fa9baadd047e8b72a7488b61 hg19 Primary Tumor C3L-03372-04 C3L-03372.WXS.T.hg38 C3L-03372 GBM WXS tumor CPT0275960006 0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM NA 0dd34017-3bea-4078-bfb6-359d08615f12 198bfc39e983233ae7667b9264d80326 hg38 Primary Tumor C3L-03372-04 +C3L-03374.miRNA-Seq.A C3L-03374 CM miRNA-Seq tissue_normal CPT0240170020 221118_UNC51-VH00562_156_AAAV2MKHV_CGATGT_S19_L001_R1_001.unaln.bam 537808217 BAM NA eb504f07-ea6b-4643-a042-d4f87216d4a3 c9b0639d8b61ef2fd61e14810e53a4ab NA Solid Tissue Normal C3L-03374-06 +C3L-03374.miRNA-Seq.T C3L-03374 CM miRNA-Seq tumor CPT0240150009 221117_UNC51-VH00562_155_AAAVL2YHV_CCGTCC_S20_L001_R1_001.unaln.bam 334157357 BAM NA 5fea8d1e-ce4e-4d3c-973b-4a68ddcf02df e29aa7e38e121fc26b27c555b6440f0b NA Primary Tumor C3L-03374-01 +C3L-03377.miRNA-Seq.A C3L-03377 CM miRNA-Seq tissue_normal CPT0239780006 221117_UNC51-VH00562_155_AAAVL2YHV_CAACTA_S11_L001_R1_001.unaln.bam 455308813 BAM NA e258a1de-d203-4532-adc6-5b5d005f9b86 b1d3063cf0d0dbd59f6e6405fac5c5ff NA Solid Tissue Normal C3L-03377-03 +C3L-03377.miRNA-Seq.T C3L-03377 CM miRNA-Seq tumor CPT0239770009 221117_UNC51-VH00562_155_AAAVL2YHV_CGTACG_S23_L001_R1_001.unaln.bam 481197774 BAM NA 3ad2c6b5-11c5-4650-8d94-d400857ab7c2 4890fa4aee66a21a24b9d47091e32210 NA Primary Tumor C3L-03377-02 C3L-03378.MethArray.Green.A C3L-03378 HNSCC Methylation Array tissue_normal CPT0199890006 203219650047_R07C01_Grn.idat 13676206 IDAT Green 8c8121bd-3054-4f6e-96b2-308969eef29b c9e7e8a6d51f28c36f824b900ac9f415 NA Solid Tissue Normal C3L-03378-05 C3L-03378.MethArray.Green.T C3L-03378 HNSCC Methylation Array tumor CPT0199880006 203271740119_R02C01_Grn.idat 13676206 IDAT Green e0486f30-6012-4751-ae3d-87e7c4be7cb7 e9486658a8113b21cd271b32665c008f NA Primary Tumor C3L-03378-04 C3L-03378.MethArray.Red.A C3L-03378 HNSCC Methylation Array tissue_normal CPT0199890006 203219650047_R07C01_Red.idat 13676206 IDAT Red d7dd3702-b506-4b4f-9822-aeb1d9fed0b8 2364a3ab8d1ea1d9bf008cf8165ab45c NA Solid Tissue Normal C3L-03378-05 @@ -13662,6 +13682,10 @@ C3L-03378.WXS.N C3L-03378 HNSCC WXS blood_normal CPT0200430002 CPT0200430002.Who C3L-03378.WXS.N.hg38 C3L-03378 HNSCC WXS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wxs_gdc_realn.bam 34848697712 BAM NA 8a903c70-64d6-4282-8503-3be43feb7c26 55c17e0a5fe1dfe793d4a8ea93160f18 hg38 Blood Derived Normal C3L-03378-31 C3L-03378.WXS.T C3L-03378 HNSCC WXS tumor CPT0199880006 CPT0199880006.WholeExome.RP-1303.bam 23450041321 BAM NA 4f0f5d96-1633-433d-ab31-acf10464c942 e7f1527f1f19d25c67c502c78fa9fe37 hg19 Primary Tumor C3L-03378-04 C3L-03378.WXS.T.hg38 C3L-03378 HNSCC WXS tumor CPT0199880006 3a309e18-6adc-4200-9961-4f696fcb2984_wxs_gdc_realn.bam 32364936005 BAM NA 344731e5-c562-4645-a65c-c1fa7eefed6d 80a1c29338b3b5d2bc8ac611c76ffc86 hg38 Primary Tumor C3L-03378-04 +C3L-03381.miRNA-Seq.A C3L-03381 CM miRNA-Seq tissue_normal CPT0240260011 221117_UNC51-VH00562_155_AAAVL2YHV_ATGAGC_S7_L001_R1_001.unaln.bam 385650081 BAM NA d19dff92-1ad3-4c54-b756-eb84dd871526 5557d77ec82a382037206f4f0702912b NA Solid Tissue Normal C3L-03381-05 +C3L-03381.miRNA-Seq.T C3L-03381 CM miRNA-Seq tumor CPT0240240009 221117_UNC51-VH00562_155_AAAVL2YHV_GTGAAA_S36_L001_R1_001.unaln.bam 329802568 BAM NA 01680c94-e4a8-4ce0-a169-3b3b2e41b0e7 b5073d73c90d1b5b3cbcc98206c8851e NA Primary Tumor C3L-03381-03 +C3L-03382.miRNA-Seq.A C3L-03382 CM miRNA-Seq tissue_normal CPT0240350005 221117_UNC51-VH00562_155_AAAVL2YHV_CACCGG_S12_L001_R1_001.unaln.bam 480728775 BAM NA 1321a20d-64d1-4998-a500-d8ee87f2197d d1352a9723e759663092f8479d5f2951 NA Solid Tissue Normal C3L-03382-06 +C3L-03382.miRNA-Seq.T C3L-03382 CM miRNA-Seq tumor CPT0240330009 221117_UNC51-VH00562_155_AAAVL2YHV_GTGGCC_S37_L001_R1_001.unaln.bam 393512446 BAM NA ff0cb50d-f875-449f-9b98-28412b2b57f8 3b12441d684f5bc36dd7e1513bfdab7a NA Primary Tumor C3L-03382-01 C3L-03385.MethArray.Green.T C3L-03385 GBM Methylation Array tumor CPT0239860006 204367490084_R06C01_Grn.idat 13677890 IDAT Green c5ef413a-9205-4a5a-a7ab-f2f44ee7ee5c 7e6e7f457338632f64f6d1101fcaa1c7 NA Primary Tumor C3L-03385-04 C3L-03385.MethArray.Red.T C3L-03385 GBM Methylation Array tumor CPT0239860006 204367490084_R06C01_Red.idat 13677890 IDAT Red 7bd922bd-4827-46be-b430-59a771ae6168 4e52ca91348a55ff6c64cb81678c1f60 NA Primary Tumor C3L-03385-04 C3L-03385.miRNA-Seq.T C3L-03385 GBM miRNA-Seq tumor CPT0239860013 200526_UNC32-K00270_0248_BHH7WFBBXY_CGATGT_S7_L001_R1_001.unaln.bam 380895617 BAM NA 79b8f443-cb3f-491e-92ee-0fa93d0fe1cd fa84b0b0bce05fa4a47530b31493c085 NA Primary Tumor C3L-03385-04 @@ -13943,7 +13967,7 @@ C3L-03491.RNA-Seq.transcriptome.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002_1 CPT0201260002_1.WholeGenome.RP-1303.bam 66764773211 BAM NA fe742c91-96a7-4183-9ee1-d8ddcad6430f f2623d88a46a9cfacbdaba2be0f947be hg19 Buccal Cell Normal C3L-03491-50,C3L-03491-51,C3L-03491-52 C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002 CPT0201260002.WholeGenome.RP-1303.bam 28153730545 BAM NA 1f5c76aa-379c-48ae-80ca-9096eab3a70b 893db18c95bc1edae49d9d03dd54d94c hg19 Buccal Cell Normal C3L-03491-50,C3L-03491-51,C3L-03491-52 C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002_1 14d1a6aa-e85e-44de-932b-e4a270c8d1da_wgs_gdc_realn.bam 220987048218 BAM NA 0ae4c8c0-bc44-4cbe-a3c3-04f845701bfb 5edb48dd4f2104442f3461ca557b8459 hg38 Buccal Cell Normal C3L-03491-50,C3L-03491-51,C3L-03491-52 -C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wgs_gdc_realn.bam 38834048412 BAM NA 5151bfab-e478-4666-a7d5-91cc71758983 7bc6ce6713b05d3a23f678caeede08ce hg38 Buccal Cell Normal C3L-03491-50,C3L-03491-51,C3L-03491-52 +C3L-03491.WGS.Nbc.hg38WGS C3L-03491 AML WGS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wgs_gdc_realn.bam 38834048412 BAM NA 5151bfab-e478-4666-a7d5-91cc71758983 7bc6ce6713b05d3a23f678caeede08ce hg38 Buccal Cell Normal C3L-03491-50,C3L-03491-51,C3L-03491-52 local_meta=WGS C3L-03491.WGS.Tbm C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 CPT0201160002.WholeGenome.RP-1303.bam 94166755555 BAM NA 2678eb89-1dbf-4b9b-bd5d-88d8022848bf 82150d8e80f03d75e25baae7d763e7b5 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-03491-54 C3L-03491.WGS.Tbm.hg38 C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 5b8efbc5-c97f-4232-8b67-88fb0a71d5df_wgs_gdc_realn.bam 139513334059 BAM NA 42b8cc51-9a6d-47ac-b02d-32d608a179cd ba581e635fced7d6ce9a16fa47ca4f1f hg38 Primary Blood Derived Cancer - Bone Marrow C3L-03491-54 C3L-03491.WXS.Nbc C3L-03491 AML WXS buccal_normal CPT0201260002 CPT0201260002.WholeExome.RP-1303.bam 28153730608 BAM NA 1b86980a-8080-4bc1-a015-7fea91d42600 cf56174fabf75da17ec5e6c95feee32b hg19 Buccal Cell Normal C3L-03491-50,C3L-03491-51,C3L-03491-52 @@ -13996,7 +14020,7 @@ C3L-03497.RNA-Seq.transcriptome.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001_1 CPT0230660001_1.WholeGenome.RP-1303.bam 72868517834 BAM NA b7827db7-eaab-4e5c-b7dd-fb5178cd7102 940deb66f8a342d1aa8db3183801796d hg19 Buccal Cell Normal C3L-03497-51,C3L-03497-52,C3L-03497-53 C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001 CPT0230660001.WholeGenome.RP-1303.bam 26983389377 BAM NA 8f24d99e-ba74-4890-b7b2-011ede0f7952 f0fae6f4f178bde896db458f13f03986 hg19 Buccal Cell Normal C3L-03497-51,C3L-03497-52,C3L-03497-53 C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001_1 a087aaa3-7b60-4e27-991d-9b9d0464ffa5_wgs_gdc_realn.bam 104030462212 BAM NA cba2d435-0d5a-4de9-a3ce-3bb906983089 4c06ea433b291d8b683bda5d70dd23a6 hg38 Buccal Cell Normal C3L-03497-51,C3L-03497-52,C3L-03497-53 -C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wgs_gdc_realn.bam 37146848269 BAM NA 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 5ce3f9a6c8cc01a459fbe384adbaf118 hg38 Buccal Cell Normal C3L-03497-51,C3L-03497-52,C3L-03497-53 +C3L-03497.WGS.Nbc.hg38WGS C3L-03497 AML WGS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wgs_gdc_realn.bam 37146848269 BAM NA 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 5ce3f9a6c8cc01a459fbe384adbaf118 hg38 Buccal Cell Normal C3L-03497-51,C3L-03497-52,C3L-03497-53 local_meta=WGS C3L-03497.WGS.Tbm C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 CPT0230630002.WholeGenome.RP-1303.bam 64905594415 BAM NA 86c43df0-ed93-4f5e-b4fc-aa9b57102524 16c135744104f79a82ea8a38f165a2d4 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-03497-54 C3L-03497.WGS.Tbm.hg38 C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 450e4b1c-4c7f-445e-91bb-880d0024fa02_wgs_gdc_realn.bam 96779530473 BAM NA 819a71b8-b34d-42de-9fff-e1c948a5ea18 7dadf9e76592abf1cb0b6392ec0968c0 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-03497-54 C3L-03497.WXS.Nbc C3L-03497 AML WXS buccal_normal CPT0230660001 CPT0230660001.WholeExome.RP-1303.bam 26983389438 BAM NA c02f56c2-13ee-4c11-8230-0db3ea6886cc 76ea2182fbc737790c084076f2f7debf hg19 Buccal Cell Normal C3L-03497-51,C3L-03497-52,C3L-03497-53 @@ -14870,6 +14894,7 @@ C3L-03987.WXS.N C3L-03987 LSCC WXS blood_normal CPT0252700002 CPT0252700002.Whol C3L-03987.WXS.N.hg38 C3L-03987 LSCC WXS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wxs_gdc_realn.bam 27830022718 BAM NA 1227fac0-e088-48bf-87be-e91b7a5a7292 0c675a7a2a89dd59f10f83e7499a757a hg38 Blood Derived Normal C3L-03987-31 C3L-03987.WXS.T C3L-03987 LSCC WXS tumor CPT0252540006 CPT0252540006.WholeExome.RP-1303.bam 32209599109 BAM NA b9048b2b-a34f-4e83-b0a7-f74440cabc52 2b53e7803b3a1f255fcb32eb69daeebf hg19 Primary Tumor C3L-03987-01 C3L-03987.WXS.T.hg38 C3L-03987 LSCC WXS tumor CPT0252540006 a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wxs_gdc_realn.bam 43630345732 BAM NA b07e8ade-3e51-45c1-a170-5c9eed214522 a0b00bb5e32f6935d2fd2c2a25cbafcf hg38 Primary Tumor C3L-03987-01 +C3L-04011.miRNA-Seq.T C3L-04011 CM miRNA-Seq tumor CPT0242880009 221117_UNC51-VH00562_155_AAAVL2YHV_ACTGAT_S2_L001_R1_001.unaln.bam 404523703 BAM NA 3c49e29c-318a-4df9-8f74-64490481c709 39908dd8995dbd905fcb7ee52a60fed5 NA Primary Tumor C3L-04011-04 C3L-04013.MethArray.Green.A C3L-04013 LSCC Methylation Array tissue_normal CPT0233330006 203220070171_R06C01_Grn.idat 13676216 IDAT Green 3b1e79f4-043c-4da0-bb92-8865bbd780f6 9fb669cf7c33c0b2fc197330e8433f1f NA Solid Tissue Normal C3L-04013-06 C3L-04013.MethArray.Green.T C3L-04013 LSCC Methylation Array tumor CPT0233320006 203219670117_R07C01_Grn.idat 13676226 IDAT Green d9c4f0cb-d26b-46c6-8937-9e7a19a909ab 2aae3ac1a73548f64b33ee1a00f67abf NA Primary Tumor C3L-04013-05 C3L-04013.MethArray.Red.A C3L-04013 LSCC Methylation Array tissue_normal CPT0233330006 203220070171_R06C01_Red.idat 13676216 IDAT Red 6233e085-48e4-465e-a6a1-fe3c48ce6f12 c0fe201ce0588ce995aa3e2fcb6a9c26 NA Solid Tissue Normal C3L-04013-06 @@ -15345,6 +15370,8 @@ C3L-04199.RNA-Seq.genomic.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9f C3L-04199.RNA-Seq.R1.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ NA 412d9433-a40f-425b-a16b-ecd6ae4dccff ae54f8c762b3e3ea8b61bc4e83e57613 NA Primary Tumor C3L-04199-14 C3L-04199.RNA-Seq.R2.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ NA 77f0aee6-1661-4c2d-958f-16e073935dd2 8e89fade1183b3cbf362c7f71efb45a0 NA Primary Tumor C3L-04199-14 C3L-04199.RNA-Seq.transcriptome.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.transcriptome.gdc_realn.bam 7505462055 BAM transcriptome 93a2efe1-cb3e-4a5b-8372-bc036683ae3b 16285eb411786115f01b2703c1b43572 hg38 Primary Tumor C3L-04199-14 +C3L-04207.miRNA-Seq.A C3L-04207 CM miRNA-Seq tissue_normal CPT0325700009 221109_UNC51-VH00562_149_AAAV5CLHV_CACCGG_S12_L001_R1_001.unaln.bam 501090404 BAM NA 624f05f7-974e-4e54-8f61-d8c52a99e01f 24027d72c1503f8d3ae92ee19d4f816c NA Solid Tissue Normal C3L-04207-06 +C3L-04212.miRNA-Seq.A C3L-04212 CM miRNA-Seq tissue_normal CPT0270640006 221109_UNC51-VH00562_149_AAAV5CLHV_ACTGAT_S2_L001_R1_001.unaln.bam 601165869 BAM NA edf78c69-a062-46a7-a9a2-203f2ea1ba6c 8b4583278ad5fd6146958d51d9db3d79 NA Solid Tissue Normal C3L-04212-06 C3L-04213.MethArray.Green.T C3L-04213 GBM Methylation Array tumor CPT0277180006 204367490030_R03C01_Grn.idat 13677885 IDAT Green 99a416e8-f01b-4505-9f64-75fdd5c86d5b 8d552955eeb20ee0366d8e04097d7738 NA Primary Tumor C3L-04213-01 C3L-04213.MethArray.Red.T C3L-04213 GBM Methylation Array tumor CPT0277180006 204367490030_R03C01_Red.idat 13677885 IDAT Red 61764414-eaf2-4995-aab3-6177e0ce485e 94c47d82a307a15054c123e533217b76 NA Primary Tumor C3L-04213-01 C3L-04213.miRNA-Seq.T C3L-04213 GBM miRNA-Seq tumor CPT0277180009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 247132876 BAM NA 4a732346-4aee-42d0-80e9-32fe22a79b68 0110a279fa78eaf70cae0563b4113dcb NA Primary Tumor C3L-04213-01 @@ -15566,6 +15593,7 @@ C3L-04270.WXS.Nbc C3L-04270 AML WXS buccal_normal CPT0280050001 CPT0280050001.Wh C3L-04270.WXS.Nbc.hg38 C3L-04270 AML WXS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wxs_gdc_realn.bam 33432029614 BAM NA b6bbc306-2ab1-45d3-9d04-6aca54c65c17 50a2da4765827ed63c8c411bf38b2be0 hg38 Buccal Cell Normal C3L-04270-52 C3L-04270.WXS.Tbm C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeExome.RP-1303.bam 21736140676 BAM NA 778d053c-1d97-4b94-82a5-14abc9ac93e6 8fc5e43233c4fc7240969dc4e576da84 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-04270-59 C3L-04270.WXS.Tbm.hg38 C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wxs_gdc_realn.bam 29926952849 BAM NA 9373160f-3fdc-4920-8d50-c2ff94a07743 c247b13c7d53eedb4da392bed9fedb01 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-04270-59 +C3L-04331.miRNA-Seq.T C3L-04331 CM miRNA-Seq tumor CPT0270410013 221109_UNC51-VH00562_149_AAAV5CLHV_CGATGT_S21_L001_R1_001.unaln.bam 378166291 BAM NA 493d8d4b-f472-4a11-87c7-61bc4e32b70b 7ab1a86e4d8d197a201a849b6335d74a NA Primary Tumor C3L-04331-01 C3L-04336.MethArray.Green.A C3L-04336 LSCC Methylation Array tissue_normal CPT0256900006 204372030139_R08C01_Grn.idat 13677880 IDAT Green e5a30652-4ae5-4f37-b136-5861117ba429 f3dc687d652f7979064e2a11dbe626ce NA Solid Tissue Normal C3L-04336-07 C3L-04336.MethArray.Green.T C3L-04336 LSCC Methylation Array tumor CPT0256850006 204372030087_R05C01_Grn.idat 13677880 IDAT Green 33b632d9-99ed-4e15-8709-9b7c0503cc47 7218dc45e4cbfefcb82c755e1e95a880 NA Primary Tumor C3L-04336-02 C3L-04336.MethArray.Red.A C3L-04336 LSCC Methylation Array tissue_normal CPT0256900006 204372030139_R08C01_Red.idat 13677880 IDAT Red 83d66753-5de6-49f6-be0f-917e0870fd75 342c9a485ffd7ea9f15c6b37d0adf736 NA Solid Tissue Normal C3L-04336-07 @@ -16234,6 +16262,10 @@ C3L-04731.WXS.N C3L-04731 GBM WXS blood_normal CPT0258420002 CPT0258420002.Whole C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM NA 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 8418032c2ac0c9aef8c83e96e96217be hg38 Blood Derived Normal C3L-04731-31 C3L-04731.WXS.T C3L-04731 GBM WXS tumor CPT0258360006 CPT0258360006.WholeExome.RP-1303.bam 19673439486 BAM NA c4fe1c9a-c8ad-4d80-9f4e-f046c886dae5 a8efa9dbb7abd3bed9213d43d614688d hg19 Primary Tumor C3L-04731-05 C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor CPT0258360006 b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM NA b265dc17-8180-4962-8576-87cfde01f80d 46a6dfb7b0d1b6e6583f89080aba698e hg38 Primary Tumor C3L-04731-05 +C3L-04732.miRNA-Seq.T C3L-04732 CM miRNA-Seq tumor CPT0297220009 221109_UNC51-VH00562_149_AAAV5CLHV_GTGAAA_S36_L001_R1_001.unaln.bam 450348592 BAM NA ec446421-6e76-4310-bd75-b05c6d7be23e 730c642d68cff91821894d8e74a63d49 NA Primary Tumor C3L-04732-02 +C3L-04733.miRNA-Seq.A C3L-04733 CM miRNA-Seq tissue_normal CPT0246410007 221117_UNC51-VH00562_155_AAAVL2YHV_CATTTT_S18_L001_R1_001.unaln.bam 431610642 BAM NA 8d6a0927-c828-496c-baab-0f4e58374e53 7029a1f7ad56d8c75fa700b4d87f00f8 NA Solid Tissue Normal C3L-04733-06 +C3L-04733.miRNA-Seq.T C3L-04733 CM miRNA-Seq tumor CPT0246390009 221117_UNC51-VH00562_155_AAAVL2YHV_GGTAGC_S33_L001_R1_001.unaln.bam 225604891 BAM NA 1cbdd4ed-3a5d-4018-9571-6dacfa5e62d9 5070f2ba7df969f71968e32d70c41134 NA Primary Tumor C3L-04733-03 +C3L-04739.miRNA-Seq.T C3L-04739 CM miRNA-Seq tumor CPT0304820009 221109_UNC51-VH00562_149_AAAV5CLHV_GTGGCC_S37_L001_R1_001.unaln.bam 374744740 BAM NA 08c89d9a-8def-4b65-bfad-825d859f2340 a0cfdff3e26eee8dcfa3a1281648730f NA Primary Tumor C3L-04739-04 C3L-04746.MethArray.Green.A C3L-04746 LSCC Methylation Array tissue_normal CPT0279080006 204372030024_R04C01_Grn.idat 13677905 IDAT Green a8825ca1-fb1e-48ec-9cd6-2131c70996c8 753dbabbaa9d60d63aebd8ccce6aa33b NA Solid Tissue Normal C3L-04746-08 C3L-04746.MethArray.Green.T C3L-04746 LSCC Methylation Array tumor CPT0279010009 204367490048_R06C01_Grn.idat 13677885 IDAT Green 29d7154f-adc3-4363-950e-e79cfb89f50f ab18be313a2ea7fac3e3bdf9ca587b20 NA Primary Tumor C3L-04746-01 C3L-04746.MethArray.Red.A C3L-04746 LSCC Methylation Array tissue_normal CPT0279080006 204372030024_R04C01_Red.idat 13677905 IDAT Red 3d44d3ca-ee6c-4bf4-965c-55ef379be7bf 3ba3ce1714c3c3c4b2d1d744b9328d22 NA Solid Tissue Normal C3L-04746-08 @@ -16455,6 +16487,8 @@ C3L-04786.WXS.N C3L-04786 LSCC WXS blood_normal CPT0279350002 CPT0279350002.Whol C3L-04786.WXS.N.hg38 C3L-04786 LSCC WXS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wxs_gdc_realn.bam 29932093972 BAM NA 487e9694-73fd-4a5f-ab4d-1d2171cd4757 d35f7ee4ceffe6b031125c217a97efe9 hg38 Blood Derived Normal C3L-04786-31 C3L-04786.WXS.T C3L-04786 LSCC WXS tumor CPT0279210009 CPT0279210009.WholeExome.RP-1303.bam 19018558188 BAM NA 0bcc5c8f-1ac0-498c-af74-487a33625516 b3d82b85f96f75bfd4ab5daf730c4c69 hg19 Primary Tumor C3L-04786-04 C3L-04786.WXS.T.hg38 C3L-04786 LSCC WXS tumor CPT0279210009 3feebd7d-0450-44eb-9c19-f112017bcf12_wxs_gdc_realn.bam 26094775383 BAM NA 15f12617-0664-4865-884b-d0b00331f2a2 a4cb29558e161746cfc47358c0fc7e98 hg38 Primary Tumor C3L-04786-04 +C3L-04787.miRNA-Seq.A C3L-04787 CM miRNA-Seq tissue_normal CPT0250100008 221118_UNC51-VH00562_156_AAAV2MKHV_CTATAC_S23_L001_R1_001.unaln.bam 440841251 BAM NA 1fef47ef-42e0-4551-8447-31e64fac11a0 61a2265771fc99c34ce5b3c625cd40bf NA Solid Tissue Normal C3L-04787-06 +C3L-04787.miRNA-Seq.T C3L-04787 CM miRNA-Seq tumor CPT0250070009 221117_UNC51-VH00562_155_AAAVL2YHV_CCAACA_S19_L001_R1_001.unaln.bam 484434109 BAM NA 8ac3676e-0c3c-477c-bfb0-da4ba364bcba 83ba376b72c14ffa1a90643aedead5f5 NA Primary Tumor C3L-04787-02 C3L-04791.MethArray.Green.T C3L-04791 HNSCC Methylation Array tumor CPT0250310006 203271740101_R05C01_Grn.idat 13676206 IDAT Green 9ae6de86-f22b-4b83-af92-fd0ee8b91caf 911410b087e9f2847a9773869b61d22b NA Primary Tumor C3L-04791-04 C3L-04791.MethArray.Red.T C3L-04791 HNSCC Methylation Array tumor CPT0250310006 203271740101_R05C01_Red.idat 13676206 IDAT Red f1b5d905-8020-415b-aa6f-3641a035ad6b 2f2e7d205b28d45616259d958daa0d10 NA Primary Tumor C3L-04791-04 C3L-04791.miRNA-Seq.A C3L-04791 HNSCC miRNA-Seq tissue_normal CPT0250330006 190228_UNC32-K00270_0151_AHYLY3BBXX_CTATAC_S39_L006_R1_001.unaln.bam 372285136 BAM NA 017346a9-e434-4781-89a3-72b6616185c3 03da83e66945c6a202fabe6345fe2ea6 NA Solid Tissue Normal C3L-04791-06 @@ -17269,6 +17303,7 @@ C3L-05022.WXS.N C3L-05022 LSCC WXS blood_normal CPT0273480002 CPT0273480002.Whol C3L-05022.WXS.N.hg38 C3L-05022 LSCC WXS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wxs_gdc_realn.bam 51869172741 BAM NA 5375bbe6-ca93-44ce-b9b3-581538a8bdc8 e56a7826cf6322fe104670d3f0c115ef hg38 Blood Derived Normal C3L-05022-31 C3L-05022.WXS.T C3L-05022 LSCC WXS tumor CPT0274960006 CPT0274960006.WholeExome.RP-1303.bam 25934422470 BAM NA 6317a479-727c-48bc-a913-dea3d6c7f2fe 5d180ff0ba35aa18e3b4279e8ca552bd hg19 Primary Tumor C3L-05022-01 C3L-05022.WXS.T.hg38 C3L-05022 LSCC WXS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wxs_gdc_realn.bam 35376808743 BAM NA 2e26f3ad-c58f-4fbd-a872-5310601a5703 9e1a7b7a7c2cb07f67213d8794c34f83 hg38 Primary Tumor C3L-05022-01 +C3L-05027.miRNA-Seq.T C3L-05027 CM miRNA-Seq tumor CPT0262740006 221117_UNC51-VH00562_155_AAAVL2YHV_CTAGCT_S24_L001_R1_001.unaln.bam 345936884 BAM NA 5474b582-eddc-4b1a-9a63-0d08f7a5c970 d2de9a1e5dda2397d2b89e44103b9753 NA Primary Tumor C3L-05027-01 C3L-05029.RNA-Seq.chimeric.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.chimeric.gdc_realn.bam 135221688 BAM chimeric ea91672c-bfdb-4dcf-8745-cd28f0af0249 c99017f7a7f0c045855aed077fcf6c6d hg38 Primary Tumor C3L-05029-16 C3L-05029.RNA-Seq.genomic.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.genomic.gdc_realn.bam 8929917342 BAM genomic 26db7c05-6a10-4610-bd9c-68220ad6c86f 6ffbefd9c6b448c8cfffbc8ebbea085e hg38 Primary Tumor C3L-05029-16 C3L-05029.RNA-Seq.R1.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R1_001.fastq.gz 4726914591 FASTQ NA 50652094-7875-4c68-bc43-be6814bee6a4 cb914cccb2d5ebaeb9609f22bacb9724 NA Primary Tumor C3L-05029-16 @@ -17386,6 +17421,8 @@ C3L-05172.WXS.N C3L-05172 LSCC WXS blood_normal CPT0297430002 CPT0297430002.Whol C3L-05172.WXS.N.hg38 C3L-05172 LSCC WXS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wxs_gdc_realn.bam 43250332219 BAM NA e6f80465-0ab7-4f1c-98dc-0d8b877fb33e eed869eb256ab36f64518c23465eb243 hg38 Blood Derived Normal C3L-05172-31 C3L-05172.WXS.T C3L-05172 LSCC WXS tumor CPT0297320006 CPT0297320006.WholeExome.RP-1303.bam 49995416534 BAM NA 6a696c6b-46a8-4a0c-a201-c7241e60b918 fdee3c7e879c53cd3d2cd4af927cfff3 hg19 Primary Tumor C3L-05172-02 C3L-05172.WXS.T.hg38 C3L-05172 LSCC WXS tumor CPT0297320006 0a416131-f6b7-460a-9591-ef8ffe154266_wxs_gdc_realn.bam 67899837993 BAM NA 30669ecb-79ab-4a97-b3d4-ef898f0a5757 af83ce125b7764a791bbc00a3dcf3d77 hg38 Primary Tumor C3L-05172-02 +C3L-05175.miRNA-Seq.A C3L-05175 CM miRNA-Seq tissue_normal CPT0277530008 221109_UNC51-VH00562_149_AAAV5CLHV_AGTTCC_S5_L001_R1_001.unaln.bam 485305421 BAM NA 03b68b36-7e9a-459e-a1bf-1c7dc28b2bff f30a30b6f0248d9def0ff9c883118bae NA Solid Tissue Normal C3L-05175-06 +C3L-05175.miRNA-Seq.T C3L-05175 CM miRNA-Seq tumor CPT0277520009 221109_UNC51-VH00562_149_AAAV5CLHV_ATCACG_S6_L001_R1_001.unaln.bam 138689084 BAM NA 5452772d-6c71-4f86-9795-fbc479f1ace0 99a7ad4c6b55bed70e27d0b946a2632f NA Primary Tumor C3L-05175-03 C3L-05176.MethArray.Green.A C3L-05176 LSCC Methylation Array tissue_normal CPT0297850006 204367400148_R08C01_Grn.idat 13677880 IDAT Green e2abc6d1-7ba9-4657-9504-8f30362a9047 c5b88ee972bb4ed8ba6a2eb2cf5c2106 NA Solid Tissue Normal C3L-05176-06 C3L-05176.MethArray.Green.T C3L-05176 LSCC Methylation Array tumor CPT0297810006 204372030127_R05C01_Grn.idat 13677880 IDAT Green ee3fdee9-200d-4b02-ab3d-85cffedd6050 08268624565fb1ef14a19066e8fecbcb NA Primary Tumor C3L-05176-02 C3L-05176.MethArray.Red.A C3L-05176 LSCC Methylation Array tissue_normal CPT0297850006 204367400148_R08C01_Red.idat 13677880 IDAT Red 8fc6a5e3-56fb-496a-9fc0-95ea59747a10 eeb963c24e00461e430c30bcad0ef7d0 NA Solid Tissue Normal C3L-05176-06 @@ -17415,6 +17452,8 @@ C3L-05176.WXS.N C3L-05176 LSCC WXS blood_normal CPT0297920002 CPT0297920002.Whol C3L-05176.WXS.N.hg38 C3L-05176 LSCC WXS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wxs_gdc_realn.bam 39721052579 BAM NA 588f5cbd-4d7b-41b8-bd6a-7cbd3f4177d9 5f589dc09b4ea2807285ee909d4fada0 hg38 Blood Derived Normal C3L-05176-32 C3L-05176.WXS.T C3L-05176 LSCC WXS tumor CPT0297810006 CPT0297810006.WholeExome.RP-1303.bam 34419652620 BAM NA 20c2298a-f94b-4327-9976-4a391e0f87e2 40963ea8b4ae3631e75fb914e8d23955 hg19 Primary Tumor C3L-05176-02 C3L-05176.WXS.T.hg38 C3L-05176 LSCC WXS tumor CPT0297810006 7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wxs_gdc_realn.bam 48289991580 BAM NA 16cd5c8a-bb98-466a-acc8-c3fdc69677ba 998c80614f7ca93786ae0bffa73bf7c5 hg38 Primary Tumor C3L-05176-02 +C3L-05206.miRNA-Seq.A C3L-05206 CM miRNA-Seq tissue_normal CPT0345970011 221118_UNC51-VH00562_156_AAAV2MKHV_TATAAT_S38_L001_R1_001.unaln.bam 326231319 BAM NA 14f3a114-fcd3-4009-bd51-c8c16eed5340 29e7d0574a632859b7c879b6a785273b NA Solid Tissue Normal C3L-05206-06 +C3L-05206.miRNA-Seq.T C3L-05206 CM miRNA-Seq tumor CPT0345930015 221103_UNC51-VH00562_145_AAAVKL3HV_CGATGT_S21_L001_R1_001.unaln.bam 437158449 BAM NA 989268b0-6166-460d-94d2-b9f0ad91ba03 cadcf2695590482af199e4fdfafeeab7 NA Primary Tumor C3L-05206-02,C3L-05206-03,C3L-05206-05 C3L-05212.MethArray.Green.A C3L-05212 LSCC Methylation Array tissue_normal CPT0296760006 204367490048_R07C01_Grn.idat 13677885 IDAT Green 18c87ff3-9152-4260-97ba-7245a1f45593 fbcd6e4f54d887a14627effd61e19414 NA Solid Tissue Normal C3L-05212-06 C3L-05212.MethArray.Green.T C3L-05212 LSCC Methylation Array tumor CPT0296710006 204367400148_R06C01_Grn.idat 13677880 IDAT Green 9bba17cc-0dce-4e18-a35a-68972aa975f6 69b7812f5f1cb742ea465116c5ffe250 NA Primary Tumor C3L-05212-01 C3L-05212.MethArray.Red.A C3L-05212 LSCC Methylation Array tissue_normal CPT0296760006 204367490048_R07C01_Red.idat 13677885 IDAT Red ae7edef1-c1d7-4032-bb46-6c2f9b9a46d5 8cf1c6d0f48b7850b8a6f2b1f47e93ad NA Solid Tissue Normal C3L-05212-06 @@ -17500,6 +17539,9 @@ C3L-05225.WXS.N C3L-05225 LSCC WXS blood_normal CPT0296690002 CPT0296690002.Whol C3L-05225.WXS.N.hg38 C3L-05225 LSCC WXS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wxs_gdc_realn.bam 32473818430 BAM NA 19f20d7b-086d-4040-9f9c-dd17e2fe5017 efbebb2966aedd825c30d15513d67e6c hg38 Blood Derived Normal C3L-05225-31 C3L-05225.WXS.T C3L-05225 LSCC WXS tumor CPT0296570006 CPT0296570006.WholeExome.RP-1303.bam 19475882881 BAM NA 987e1444-ba3d-41f6-b6c2-ed0e9392416f 20deaa0b8dbf19f272d23fa389b477d3 hg19 Primary Tumor C3L-05225-01 C3L-05225.WXS.T.hg38 C3L-05225 LSCC WXS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wxs_gdc_realn.bam 26692348336 BAM NA cff5ad7d-816f-4f8f-b919-f96dbac7cbe2 b500bdf342dad6eafce479c71e67f1ab hg38 Primary Tumor C3L-05225-01 +C3L-05229.miRNA-Seq.A C3L-05229 CM miRNA-Seq tissue_normal CPT0272520019 221118_UNC51-VH00562_156_AAAV2MKHV_GACGAC_S26_L001_R1_001.unaln.bam 379355333 BAM NA 9a6cdb6c-bcf7-4014-bd25-5a3055b7bc69 81ff96d81c65662e6b5386afae4fceca NA Solid Tissue Normal C3L-05229-06 +C3L-05235.miRNA-Seq.A C3L-05235 CM miRNA-Seq tissue_normal CPT0346150013 221118_UNC51-VH00562_156_AAAV2MKHV_TCATTC_S39_L001_R1_001.unaln.bam 432821209 BAM NA ae88fc7f-f4b8-4b4f-b985-6d1182cd1bd8 2f3fc8c0937d75795b2665b77666ed89 NA Solid Tissue Normal C3L-05235-07 +C3L-05235.miRNA-Seq.T C3L-05235 CM miRNA-Seq tumor CPT0346090009 221103_UNC51-VH00562_145_AAAVKL3HV_TTAGGC_S48_L001_R1_001.unaln.bam 235972339 BAM NA beb9d76c-03f3-48a0-935f-aadd48f56c45 4d0be3bc3a48382535f23d8b9b2c2faa NA Primary Tumor C3L-05235-01 C3L-05239.MethArray.Green.T C3L-05239 GBM Methylation Array tumor CPT0346710006 204930640083_R08C01_Grn.idat 13677885 IDAT Green 226f5aee-f475-42e4-97b9-88fa6b51c92f 6889df0f9206dd1e4cf16d995314ad56 NA Primary Tumor C3L-05239-05 C3L-05239.MethArray.Red.T C3L-05239 GBM Methylation Array tumor CPT0346710006 204930640083_R08C01_Red.idat 13677885 IDAT Red 22d11f1e-80cd-4521-84c0-8cf623ec19fc 81df0570b493ef831814ea12a6fb2176 NA Primary Tumor C3L-05239-05 C3L-05239.miRNA-Seq.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM NA 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 NA Primary Tumor C3L-05239-05 @@ -17517,6 +17559,15 @@ C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal CPT0346770002 CPT0346770002.Whole C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM NA 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb 194348106658a2114010e8684763c283 hg38 Blood Derived Normal C3L-05239-31 C3L-05239.WXS.T C3L-05239 GBM WXS tumor CPT0346710006 CPT0346710006.WholeExome.RP-1303.bam 18743445741 BAM NA 12ae1706-4063-446f-931a-67559587801f 1578bf468e186202b42f5367283f3647 hg19 Primary Tumor C3L-05239-05 C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor CPT0346710006 7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM NA 73dcd24f-0fde-46b2-a48b-11f402c43c99 c81d319fc4c41491f322ebac125befcf hg38 Primary Tumor C3L-05239-05 +C3L-05259.miRNA-Seq.T C3L-05259 CM miRNA-Seq tumor CPT0340860010 221109_UNC51-VH00562_149_AAAV5CLHV_CATTTT_S18_L001_R1_001.unaln.bam 470942016 BAM NA 94a042ab-d87d-40f1-9a0a-a502baa17886 e46f6b24fbde81a2937b4414aba7fa22 NA Primary Tumor C3L-05259-01,C3L-05259-05 +C3L-05261.miRNA-Seq.T C3L-05261 CM miRNA-Seq tumor CPT0340990010 221109_UNC51-VH00562_149_AAAV5CLHV_CCAACA_S19_L001_R1_001.unaln.bam 180531892 BAM NA 5cd5a011-0a42-41b1-bcd0-5d6c2fae5a7e 5a0a8683c4ef844dd29ca39864fa056c NA Primary Tumor C3L-05261-03,C3L-05261-04 +C3L-05262.miRNA-Seq.A C3L-05262 CM miRNA-Seq tissue_normal CPT0282580009 221109_UNC51-VH00562_149_AAAV5CLHV_AGTCAA_S4_L001_R1_001.unaln.bam 398216550 BAM NA 3658a193-0526-4428-b8b6-5486b04c1761 923fb310b6ca65dee5c97e98dc648629 NA Solid Tissue Normal C3L-05262-06,C3L-05262-08 +C3L-05262.miRNA-Seq.T C3L-05262 CM miRNA-Seq tumor CPT0282540014 221109_UNC51-VH00562_149_AAAV5CLHV_GGCTAC_S32_L001_R1_001.unaln.bam 449391530 BAM NA 27a91f17-9cfb-4024-a87c-4ab20b4a6f6d f89f2b70e6873a0fb4db41e513d123a3 NA Primary Tumor C3L-05262-02,C3L-05262-05 +C3L-05290.miRNA-Seq.T C3L-05290 CM miRNA-Seq tumor CPT0341190009 221109_UNC51-VH00562_149_AAAV5CLHV_CTAGCT_S24_L001_R1_001.unaln.bam 418659713 BAM NA 1c232799-3d02-472c-a3da-554a57276338 382bcfd5faa6bfb094a215280b8fa66d NA Primary Tumor C3L-05290-01 +C3L-05299.miRNA-Seq.A C3L-05299 CM miRNA-Seq tissue_normal CPT0282220006 221118_UNC51-VH00562_156_AAAV2MKHV_TAATCG_S35_L001_R1_001.unaln.bam 427959318 BAM NA 5814dd9b-3008-45a3-bad1-aca471e365ae 2c24e0809c208669cb230079c7f7519c NA Solid Tissue Normal C3L-05299-06 +C3L-05299.miRNA-Seq.T C3L-05299 CM miRNA-Seq tumor CPT0282200013 221109_UNC51-VH00562_149_AAAV5CLHV_TAGCTT_S41_L001_R1_001.unaln.bam 507675990 BAM NA 3666b93c-2628-4a75-ab84-f1855560d5ad 4b040ab2f2465079e56813323b4e0134 NA Primary Tumor C3L-05299-04 +C3L-05302.miRNA-Seq.A C3L-05302 CM miRNA-Seq tissue_normal CPT0282050009 221109_UNC51-VH00562_149_AAAV5CLHV_CTTGTA_S27_L001_R1_001.unaln.bam 215674097 BAM NA 877e7e94-036e-4f89-8d8b-dc59a005e21f 72942a7cb7b50cb7fe24a741a8aeec4b NA Solid Tissue Normal C3L-05302-07 +C3L-05302.miRNA-Seq.T C3L-05302 CM miRNA-Seq tumor CPT0281990013 221109_UNC51-VH00562_149_AAAV5CLHV_GATCAG_S30_L001_R1_001.unaln.bam 451892642 BAM NA 48eb0461-dc66-4225-8f1e-6a36564eb2d1 ad4e5b93cdf4934f4d19111a44686433 NA Primary Tumor C3L-05302-01 C3L-05313.MethArray.Green.Tbm C3L-05313 AML Methylation Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Grn.idat 13677955 IDAT Green 9e98c5b1-2086-4e5a-8b12-30aafe032714 a813f48a25061f5701bb57d02dde6ea8 NA Primary Blood Derived Cancer - Bone Marrow C3L-05313-54 C3L-05313.MethArray.Red.Tbm C3L-05313 AML Methylation Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Red.idat 13677955 IDAT Red f5035698-fc64-4ca3-b505-56bed0caa3a2 875dc99237001389f8a6b13cb0459a0b NA Primary Blood Derived Cancer - Bone Marrow C3L-05313-54 C3L-05313.miRNA-Seq.Tbm C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGAAG_S31_L007_R1_001.unaln.bam 405396432 BAM NA ec6361e3-7777-40c7-8e73-38739400b11a 9f0e2b6ad6e42f549b2c3911a0b3dd36 NA Primary Blood Derived Cancer - Bone Marrow C3L-05313-55 @@ -17724,6 +17775,8 @@ C3L-05338.WXS.Nbc C3L-05338 AML WXS buccal_normal CPT0303760001 CPT0303760001.Wh C3L-05338.WXS.Nbc.hg38 C3L-05338 AML WXS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wxs_gdc_realn.bam 40043987846 BAM NA 1f8df55f-a261-4316-bb19-972442496f86 34820f7dfc28a42ac7e376c5d2c651ff hg38 Buccal Cell Normal C3L-05338-53 C3L-05338.WXS.Tbm C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeExome.RP-1303.bam 30870352146 BAM NA 8a102a76-2f4c-4ca6-a6af-1a4793b1dda9 01ce2357dc02c7e0742c1c07c5781597 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-05338-54 C3L-05338.WXS.Tbm.hg38 C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wxs_gdc_realn.bam 43084082849 BAM NA 0f344126-30a6-4718-bc90-4e1de755d276 2060dd6d4aec44e3ff2b8d5a20dfc58a hg38 Primary Blood Derived Cancer - Bone Marrow C3L-05338-54 +C3L-05362.miRNA-Seq.A C3L-05362 CM miRNA-Seq tissue_normal CPT0341360006 221109_UNC51-VH00562_149_AAAV5CLHV_CACTCA_S14_L001_R1_001.unaln.bam 401468264 BAM NA ee7c3da2-0fb1-4e71-b499-557a8898f7fa 220fffdba6e1f9b72f310ef825e02801 NA Solid Tissue Normal C3L-05362-07 +C3L-05362.miRNA-Seq.T C3L-05362 CM miRNA-Seq tumor CPT0341310009 221109_UNC51-VH00562_149_AAAV5CLHV_CTATAC_S25_L001_R1_001.unaln.bam 302265084 BAM NA 75a6ca02-401d-40a1-b4dd-95eeff498681 68e91e68b75bbfbc1761487a4213161a NA Primary Tumor C3L-05362-02 C3L-05369.MethArray.Green.A C3L-05369 LSCC Methylation Array tissue_normal CPT0294480006 204372030015_R04C01_Grn.idat 13677905 IDAT Green f5a79f0d-1a10-43d8-963c-685f261d9d66 b9796189bbec29d0836d54392b69c525 NA Solid Tissue Normal C3L-05369-08 C3L-05369.MethArray.Green.T C3L-05369 LSCC Methylation Array tumor CPT0294450006 204367470131_R05C01_Grn.idat 13677880 IDAT Green fcfa9bd6-869d-4965-a42c-7ad6617544de 55e96f5e8a2f0470c1e1ffcd94f6243a NA Primary Tumor C3L-05369-05 C3L-05369.MethArray.Red.A C3L-05369 LSCC Methylation Array tissue_normal CPT0294480006 204372030015_R04C01_Red.idat 13677905 IDAT Red e2441776-a26a-483c-8d57-aebbd971647f 5896f469e52418e090c9bc7232d3c67b NA Solid Tissue Normal C3L-05369-08 @@ -18182,6 +18235,12 @@ C3L-05481.WXS.N C3L-05481 GBM WXS blood_normal CPT0402530002 CPT0402530002.Whole C3L-05481.WXS.N.hg38 C3L-05481 GBM WXS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wxs_gdc_realn.bam 35734641239 BAM NA c951e25c-569b-4330-9f20-c9cf57eb8291 63a915287afce5cc7c954209ccb0e937 hg38 Blood Derived Normal C3L-05481-31 C3L-05481.WXS.T C3L-05481 GBM WXS tumor CPT0406370007 CPT0406370007.WholeExome.RP-1303.bam 22329938537 BAM NA 3d539fca-80f3-44fa-8984-c29a9b1eb26f fc5df7ed9642071d1df3a6696dbd1ecc hg19 Primary Tumor C3L-05481-03 C3L-05481.WXS.T.hg38 C3L-05481 GBM WXS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wxs_gdc_realn.bam 30699521739 BAM NA e6b33d67-a8b0-42ce-8994-6e3e5e782da4 8414079d0f7b780a474c3e6ddc35fd21 hg38 Primary Tumor C3L-05481-03 +C3L-05517.miRNA-Seq.T C3L-05517 CM miRNA-Seq tumor CPT0287530009 221109_UNC51-VH00562_149_AAAV5CLHV_ACTTGA_S3_L001_R1_001.unaln.bam 317194361 BAM NA f9f255ca-34d7-4958-a974-72af26c8e9be 0e53e472d70b96bb0ad28d894538e0a1 NA Primary Tumor C3L-05517-01 +C3L-05518.miRNA-Seq.A C3L-05518 CM miRNA-Seq tissue_normal CPT0335030008 221109_UNC51-VH00562_149_AAAV5CLHV_CAAAAG_S10_L001_R1_001.unaln.bam 464273722 BAM NA 1796f22c-7e95-44a3-ab53-7cfd1b108e74 7e1db314b5d03f53204653676749b57e NA Solid Tissue Normal C3L-05518-02 +C3L-05518.miRNA-Seq.T C3L-05518 CM miRNA-Seq tumor CPT0335020013 221103_UNC51-VH00562_145_AAAVKL3HV_GCCAAT_S31_L001_R1_001.unaln.bam 523916715 BAM NA c32b8ba8-3eb4-4b91-badd-dca89e6f311c 56745e50b7dcaef06c7feebfd3ea977b NA Primary Tumor C3L-05518-01 +C3L-05527.miRNA-Seq.T C3L-05527 CM miRNA-Seq tumor CPT0286650009 221109_UNC51-VH00562_149_AAAV5CLHV_GCCAAT_S31_L001_R1_001.unaln.bam 129069501 BAM NA 2fc62f73-2f92-4b9c-b577-401b64f52385 4c24986053ff73d9e22e9505db31ba85 NA Primary Tumor C3L-05527-01 +C3L-05556.miRNA-Seq.A C3L-05556 CM miRNA-Seq tissue_normal CPT0373060016 221103_UNC51-VH00562_145_AAAVKL3HV_GGTAGC_S33_L001_R1_001.unaln.bam 441089115 BAM NA 76560518-d755-4f1f-a395-869978796fbe 7fb547a83ffd3be015637921d721b5c9 NA Solid Tissue Normal C3L-05556-06 +C3L-05556.miRNA-Seq.T C3L-05556 CM miRNA-Seq tumor CPT0373460009 221109_UNC51-VH00562_149_AAAV5CLHV_TCCCGA_S44_L001_R1_001.unaln.bam 412024272 BAM NA 26f345b4-6e46-4a89-a038-40c497e84142 af70eba655f7d847309ecac381bb3984 NA Primary Tumor C3L-05556-01 C3L-05571.MethArray.Green.T C3L-05571 UCEC Methylation Array tumor CPT0275270009 204372030024_R01C01_Grn.idat 13677905 IDAT Green 94b106fb-b0c9-4e73-917f-f9792591e6ec d6ed0930b2680bf5233e71cd3ebd4d1e NA Primary Tumor C3L-05571-03 C3L-05571.MethArray.Red.T C3L-05571 UCEC Methylation Array tumor CPT0275270009 204372030024_R01C01_Red.idat 13677905 IDAT Red 7ef175a4-38e0-46ab-8634-93b3c4926cbc 3e030b20324cb1f88c2a3750d2421bdb NA Primary Tumor C3L-05571-03 C3L-05571.miRNA-Seq.T C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L008_R1_001.unaln.bam 252365298 BAM NA 68c3bd9e-8acb-4f9f-976e-f7f1bf8ac0ae 1c23c36fb9b06a8aa42e4c82cf7ed060 NA Primary Tumor C3L-05571-03 @@ -18209,6 +18268,10 @@ C3L-05574.RNA-Seq.genomic.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c C3L-05574.RNA-Seq.R1.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ NA d22359eb-1963-4331-ac8e-5bfe21da379a 5a5189070c658feb4331aa6946b85df3 NA Primary Tumor C3L-05574-15 C3L-05574.RNA-Seq.R2.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ NA 0824ef96-da24-4447-b004-870d0a8f0e09 0affd61dd280a8e64422140fa56c3111 NA Primary Tumor C3L-05574-15 C3L-05574.RNA-Seq.transcriptome.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.transcriptome.gdc_realn.bam 8225640220 BAM transcriptome 314721fd-f0f0-48d0-abec-cd2871e4d2e3 133fbd299be3ec224d9e39901eae52a6 hg38 Primary Tumor C3L-05574-15 +C3L-05598.miRNA-Seq.T C3L-05598 CM miRNA-Seq tumor CPT0346280009 221109_UNC51-VH00562_149_AAAV5CLHV_ATGAGC_S7_L001_R1_001.unaln.bam 401016223 BAM NA d26facb8-d5aa-46bd-8c9d-fa3a9e534137 6620f5d2182b10992fca4fd2baca951d NA Primary Tumor C3L-05598-03 +C3L-05638.miRNA-Seq.T C3L-05638 CM miRNA-Seq tumor CPT0346390009 221109_UNC51-VH00562_149_AAAV5CLHV_ATTCCT_S9_L001_R1_001.unaln.bam 276067927 BAM NA 1a54ead1-bcde-4927-97e9-9180cbee7319 283af6fd0eef4d6aa142c5a978c32195 NA Primary Tumor C3L-05638-02 +C3L-05644.miRNA-Seq.A C3L-05644 CM miRNA-Seq tissue_normal CPT0346470006 221109_UNC51-VH00562_149_AAAV5CLHV_CACGAT_S13_L001_R1_001.unaln.bam 487874329 BAM NA da960cf2-fd21-46bb-98a8-611bf8394bd3 d5561b8f73dd5c1d8b46a62df807d3f1 NA Solid Tissue Normal C3L-05644-06 +C3L-05644.miRNA-Seq.T C3L-05644 CM miRNA-Seq tumor CPT0346460009 221109_UNC51-VH00562_149_AAAV5CLHV_CAGGCG_S16_L001_R1_001.unaln.bam 453897197 BAM NA b8a800b2-e87d-4bf9-ad08-5aca58eb5dec 94aab566e9089c80a5be26ceca7090c7 NA Primary Tumor C3L-05644-04 C3L-05678.MethArray.Green.Tpb C3L-05678 AML Methylation Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Grn.idat 13677885 IDAT Green e984db26-9ec3-4b95-8958-f3cb8df408e1 80c99d6c79ae49ac209c379908874e17 NA Primary Blood Derived Cancer - Peripheral Blood C3L-05678-59 C3L-05678.MethArray.Red.Tpb C3L-05678 AML Methylation Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Red.idat 13677885 IDAT Red c8466f3f-4fb5-4e14-aa20-4861d84fd222 0e36cd84b9481a8ea5e2544006c2763c NA Primary Blood Derived Cancer - Peripheral Blood C3L-05678-59 C3L-05678.miRNA-Seq.Tpb C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L001_R1_001.unaln.bam 274806128 BAM NA b1136002-c557-45e4-81a2-9faf732a1046 9dcb236863d2102319af1a2bafa8c6cc NA Primary Blood Derived Cancer - Peripheral Blood C3L-05678-60 @@ -18274,6 +18337,8 @@ C3L-05763.RNA-Seq.genomic.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a C3L-05763.RNA-Seq.R1.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ NA facce343-1069-418e-a147-21ce454ae89b a1b39d30ca817f339e1fcb2113f64429 NA Primary Tumor C3L-05763-11 C3L-05763.RNA-Seq.R2.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ NA 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 6c715b3ac94f59c21451b868c01d0261 NA Primary Tumor C3L-05763-11 C3L-05763.RNA-Seq.transcriptome.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.transcriptome.gdc_realn.bam 8110124991 BAM transcriptome 9cd4cf0f-a587-405e-8105-5c46858d2d22 3811fcb355f611e0a2cf7b1d9dbfeef1 hg38 Primary Tumor C3L-05763-11 +C3L-05781.miRNA-Seq.A C3L-05781 CM miRNA-Seq tissue_normal CPT0306100008 221109_UNC51-VH00562_149_AAAV5CLHV_CAACTA_S11_L001_R1_001.unaln.bam 471447603 BAM NA 6f941215-d45d-486d-9111-778c7c0c1e3b 82913924597b7cb3c86a9b2f1bb31b8b NA Solid Tissue Normal C3L-05781-06 +C3L-05781.miRNA-Seq.T C3L-05781 CM miRNA-Seq tumor CPT0306060009 221109_UNC51-VH00562_149_AAAV5CLHV_GTTTCG_S38_L001_R1_001.unaln.bam 319199417 BAM NA b5261baa-29ab-4697-984f-b74e8dbe0c96 bba9b93261cb40216636ee08780805f4 NA Primary Tumor C3L-05781-01 C3L-05811.MethArray.Green.Tpb C3L-05811 AML Methylation Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Grn.idat 13677890 IDAT Green 5c8821fb-9334-43c9-a149-fa61d27e72a0 99d1955cb3ca819325195995b7457f1d NA Primary Blood Derived Cancer - Peripheral Blood C3L-05811-54 C3L-05811.MethArray.Red.Tpb C3L-05811 AML Methylation Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Red.idat 13677890 IDAT Red 00221a20-250a-4836-81a2-a451202e0711 3699403a3153f331c7199aabe4ba8bc9 NA Primary Blood Derived Cancer - Peripheral Blood C3L-05811-54 C3L-05811.miRNA-Seq.Tpb C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTTGTA_S32_L002_R1_001.unaln.bam 163702318 BAM NA 19912d4a-0364-400f-96dc-c43cf3233c4d d2d3e9ddc388beefae7d4e70fafcfe2f NA Primary Blood Derived Cancer - Peripheral Blood C3L-05811-56 @@ -18359,6 +18424,7 @@ C3L-05819.WXS.Nbc C3L-05819 AML WXS buccal_normal CPT0341870002 CPT0341870002.Wh C3L-05819.WXS.Nbc.hg38 C3L-05819 AML WXS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wxs_gdc_realn.bam 34395335551 BAM NA 08a8f112-a896-4435-bec0-4f7c3081d5c3 dfd5017f4273c810ea93f63b328c376c hg38 Buccal Cell Normal C3L-05819-50,C3L-05819-51 C3L-05819.WXS.Tpb C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeExome.RP-1303.bam 23019547119 BAM NA 43ffbea2-a345-48ac-9b95-8105e9d69436 f0038c5a840d765dd3faeaed879ec71c hg19 Primary Blood Derived Cancer - Peripheral Blood C3L-05819-54 C3L-05819.WXS.Tpb.hg38 C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wxs_gdc_realn.bam 32072259434 BAM NA 09d2c250-7d1b-4ce1-b341-f22b344cc4ec f4165b21c964967c75dc31859b3a1bf5 hg38 Primary Blood Derived Cancer - Peripheral Blood C3L-05819-54 +C3L-05839.miRNA-Seq.T C3L-05839 CM miRNA-Seq tumor CPT0346880010 221103_UNC51-VH00562_145_AAAVKL3HV_TGACCA_S47_L001_R1_001.unaln.bam 309741052 BAM NA baefe460-2a03-4ee7-929e-fe70691cfc52 7e1043253a5cddb03994490fb3310d89 NA Primary Tumor C3L-05839-02,C3L-05839-03,C3L-05839-04,C3L-05839-05 C3L-05848.MethArray.Green.T C3L-05848 UCEC Methylation Array tumor CPT0288750009 204372030106_R06C01_Grn.idat 13677885 IDAT Green 0a065a8b-c02c-4b0b-b6a3-4e251a8c4ad4 9558bde51f725c60484b03d5cdb0df62 NA Primary Tumor C3L-05848-01 C3L-05848.MethArray.Red.T C3L-05848 UCEC Methylation Array tumor CPT0288750009 204372030106_R06C01_Red.idat 13677885 IDAT Red b4c3d582-0793-4f9b-9ec4-897dba398e85 03be4c8aed9fac92cb60fb38ecf9d196 NA Primary Tumor C3L-05848-01 C3L-05848.miRNA-Seq.T C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L008_R1_001.unaln.bam 194402343 BAM NA eb251cc7-d9e3-4755-b1d5-f71ef8dbde73 1affa8e420f5b522ac6a6e461f39cff8 NA Primary Tumor C3L-05848-01 @@ -18766,6 +18832,10 @@ C3L-05908.WXS.Nbc C3L-05908 AML WXS buccal_normal CPT0326940002 CPT0326940002.Wh C3L-05908.WXS.Nbc.hg38 C3L-05908 AML WXS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wxs_gdc_realn.bam 35730190416 BAM NA 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c 98f60c535c7b069b5746547e9a385bd0 hg38 Buccal Cell Normal C3L-05908-50 C3L-05908.WXS.Tbm C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeExome.RP-1303.bam 21302425000 BAM NA ef626016-61b3-49ec-b3cb-5be53dc4ebe7 913f591a2a0c30d7778813b189ae9377 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-05908-54 C3L-05908.WXS.Tbm.hg38 C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wxs_gdc_realn.bam 29849365051 BAM NA 24bc77be-7a63-4942-a438-31028cc4fea9 89a4c09d505f0ce5d0d7eb62879fe6b6 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-05908-54 +C3L-05987.miRNA-Seq.T C3L-05987 CM miRNA-Seq tumor CPT0360850006 221103_UNC51-VH00562_145_AAAVKL3HV_ACTTGA_S3_L001_R1_001.unaln.bam 459047769 BAM NA 2c37d594-5534-497a-b585-25735378f7c8 09a7fad3fc28a2e8e39da75b273e2fed NA Primary Tumor C3L-05987-02 +C3L-06019.miRNA-Seq.T C3L-06019 CM miRNA-Seq tumor CPT0359050009 221103_UNC51-VH00562_145_AAAVKL3HV_ACAGTG_S1_L001_R1_001.unaln.bam 465825971 BAM NA 32c8c748-5097-4f37-897d-15631285dd3f 814dc7fec2f81f0cecda27eb8bf4e34f NA Primary Tumor C3L-06019-01 +C3L-06023.miRNA-Seq.T C3L-06023 CM miRNA-Seq tumor CPT0361750013 221103_UNC51-VH00562_145_AAAVKL3HV_GTTTCG_S38_L001_R1_001.unaln.bam 440235886 BAM NA ef3122c2-81a4-46c0-ba7d-1b1e4c0553cc f916e5321fc1170446fc38c4d284d822 NA Primary Tumor C3L-06023-02 +C3L-06025.miRNA-Seq.T C3L-06025 CM miRNA-Seq tumor CPT0361880006 221103_UNC51-VH00562_145_AAAVKL3HV_AGTTCC_S5_L001_R1_001.unaln.bam 481480539 BAM NA b325e1f4-aa5d-4feb-9c50-b622724d4a21 4947336234f44e58c838539457a5bf6c NA Primary Tumor C3L-06025-03 C3L-06061.MethArray.Green.Tbm C3L-06061 AML Methylation Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Grn.idat 13677955 IDAT Green 4d05bfb3-9c0d-4766-98f1-9d1f86cda575 6eb3165b1f380d36d2a73ce24a95c68f NA Primary Blood Derived Cancer - Bone Marrow C3L-06061-54 C3L-06061.MethArray.Red.Tbm C3L-06061 AML Methylation Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Red.idat 13677955 IDAT Red 197ccda7-f444-4f02-bdc3-ce18ae6c4889 c6ba9d606744484d8c0265333d156fac NA Primary Blood Derived Cancer - Bone Marrow C3L-06061-54 C3L-06061.miRNA-Seq.Tbm C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 210331_UNC31-K00269_0297_AHKCFKBBXY_GAGTGG_S53_L008_R1_001.unaln.bam 285259644 BAM NA cfe69a28-e93d-4b5f-96e4-cdecc79dede1 f72e798d4b3ce098745ec927b1899c98 NA Primary Blood Derived Cancer - Bone Marrow C3L-06061-55 @@ -19045,6 +19115,12 @@ C3L-06090.WXS.Nbc C3L-06090 AML WXS buccal_normal CPT0356940003 CPT0356940003.Wh C3L-06090.WXS.Nbc.hg38 C3L-06090 AML WXS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wxs_gdc_realn.bam 28827956277 BAM NA 71ab0872-716e-451f-8bcb-46b1805592cf 69fb1e4720cdf5fddca3ed59459730fb hg38 Buccal Cell Normal C3L-06090-50,C3L-06090-51,C3L-06090-52 C3L-06090.WXS.Tpb C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeExome.RP-1303.bam 22241932064 BAM NA 9cb34e01-5744-40fd-89eb-b5fa99edc1cc e6cbec164fd2728e06fc9e49b4e4ac43 hg19 Primary Blood Derived Cancer - Peripheral Blood C3L-06090-55 C3L-06090.WXS.Tpb.hg38 C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wxs_gdc_realn.bam 30681620462 BAM NA b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf 68c7f68b14d18aeee53c7fd872a5cc48 hg38 Primary Blood Derived Cancer - Peripheral Blood C3L-06090-55 +C3L-06091.miRNA-Seq.T C3L-06091 CM miRNA-Seq tumor CPT0361150006 221103_UNC51-VH00562_145_AAAVKL3HV_GGCTAC_S32_L001_R1_001.unaln.bam 228906154 BAM NA 3138e45a-6860-41ee-87db-e1be53fc59d9 3726887d46a99502aff651e3b21ca261 NA Primary Tumor C3L-06091-03 +C3L-06110.miRNA-Seq.T C3L-06110 CM miRNA-Seq tumor CPT0319740009 221109_UNC51-VH00562_149_AAAV5CLHV_CCGTCC_S20_L001_R1_001.unaln.bam 289789564 BAM NA 980e07b1-219b-4a3e-a43f-b999409ee0d7 2439bcbb02817853139055777c1eb92a NA Primary Tumor C3L-06110-01 +C3L-06113.miRNA-Seq.A C3L-06113 CM miRNA-Seq tissue_normal CPT0319830010 221109_UNC51-VH00562_149_AAAV5CLHV_TATAAT_S42_L001_R1_001.unaln.bam 368333468 BAM NA 5cf5e4db-7210-4a0c-a816-cb39590c116b e1e535b10ab03948e21353fe43197182 NA Solid Tissue Normal C3L-06113-02 +C3L-06113.miRNA-Seq.T C3L-06113 CM miRNA-Seq tumor CPT0319820009 221109_UNC51-VH00562_149_AAAV5CLHV_GTAGAG_S34_L001_R1_001.unaln.bam 392874734 BAM NA e73ab17c-3b46-4709-a5aa-dae19d4a689b 0f2d09ed895bd60b3a6f3af5e86d8412 NA Primary Tumor C3L-06113-01 +C3L-06115.miRNA-Seq.A C3L-06115 CM miRNA-Seq tissue_normal CPT0334900010 221109_UNC51-VH00562_149_AAAV5CLHV_TCATTC_S43_L001_R1_001.unaln.bam 377522926 BAM NA a340906b-8e03-4e15-ac1f-e9aca0127e16 2fce4f662f162e16534197de565b5bfc NA Solid Tissue Normal C3L-06115-04 +C3L-06115.miRNA-Seq.T C3L-06115 CM miRNA-Seq tumor CPT0334850009 221109_UNC51-VH00562_149_AAAV5CLHV_CTCAGA_S26_L001_R1_001.unaln.bam 466445926 BAM NA ecb5cea3-f1be-46b7-ae78-74b58012014d a823f4506c4000a7f8716648e69fe264 NA Primary Tumor C3L-06115-01 C3L-06166.RNA-Seq.chimeric.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.chimeric.gdc_realn.bam 88861301 BAM chimeric c54cd277-680a-4d3e-9c42-1dd8e75693d6 da326df8209c8b5b6acc373370b2134a hg38 Primary Tumor C3L-06166-13 C3L-06166.RNA-Seq.genomic.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.genomic.gdc_realn.bam 5519855623 BAM genomic e508fdcd-20bd-439c-b659-e469956ddf50 dc428186305cb0ccbfa22eb0b55a9c69 hg38 Primary Tumor C3L-06166-13 C3L-06166.RNA-Seq.R1.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ NA e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 94fb955ed112911b77c7218cffdd52a1 NA Primary Tumor C3L-06166-13 @@ -19078,6 +19154,15 @@ C3L-06169.WXS.N C3L-06169 LSCC WXS blood_normal CPT0294750002 CPT0294750002.Whol C3L-06169.WXS.N.hg38 C3L-06169 LSCC WXS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wxs_gdc_realn.bam 36419327281 BAM NA e4516e9f-55ec-4d26-95da-94432a652dd6 bb7d77083bd16a530863ad73f24f685f hg38 Blood Derived Normal C3L-06169-31 C3L-06169.WXS.T C3L-06169 LSCC WXS tumor CPT0294630006 CPT0294630006.WholeExome.RP-1303.bam 19082996953 BAM NA 57f91759-b383-4792-971a-3402dfe2f5c4 71efa1f248b1785073c7aa2f2fea604d hg19 Primary Tumor C3L-06169-05 C3L-06169.WXS.T.hg38 C3L-06169 LSCC WXS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wxs_gdc_realn.bam 26741225402 BAM NA f1cc54af-4370-4abb-82c2-d0d4dc3f7591 6b4e5fc677d27ac25cc5b86a8223eb0e hg38 Primary Tumor C3L-06169-05 +C3L-06195.miRNA-Seq.T C3L-06195 CM miRNA-Seq tumor CPT0424530006 221103_UNC51-VH00562_145_AAAVKL3HV_CACGAT_S13_L001_R1_001.unaln.bam 364461877 BAM NA 716d87d0-60ee-4cd6-a7b8-67606523daaa 9fc23ce71a548e78e176eb539096e987 NA Primary Tumor C3L-06195-03 +C3L-06206.miRNA-Seq.T C3L-06206 CM miRNA-Seq tumor CPT0424700009 221118_UNC51-VH00562_156_AAAV2MKHV_ATCACG_S4_L001_R1_001.unaln.bam 232152638 BAM NA e239ea68-2aae-4941-8ceb-bf5d3634e410 6a135a89baf871fc9bb50332828352bf NA Primary Tumor C3L-06206-04 +C3L-06207.miRNA-Seq.T C3L-06207 CM miRNA-Seq tumor CPT0424840009 221118_UNC51-VH00562_156_AAAV2MKHV_TAGCTT_S37_L001_R1_001.unaln.bam 375598065 BAM NA ac508092-6d6f-4c02-a74a-e4bb6a3041b6 31432a603d1ee669bb7107e0e0013ab9 NA Primary Tumor C3L-06207-02 +C3L-06299.miRNA-Seq.T C3L-06299 CM miRNA-Seq tumor CPT0362960006 221103_UNC51-VH00562_145_AAAVKL3HV_GTCCGC_S35_L001_R1_001.unaln.bam 236808718 BAM NA 5fe118d8-3c95-4efe-a297-2c67b8566841 5aaa117516a4be07b8f77f259d7eaa9d NA Primary Tumor C3L-06299-02 +C3L-06311.miRNA-Seq.T C3L-06311 CM miRNA-Seq tumor CPT0363210013 221103_UNC51-VH00562_145_AAAVKL3HV_GAGTGG_S29_L001_R1_001.unaln.bam 399482626 BAM NA 59d17041-f5d6-4dac-a89a-2b971137060d d8ecc763ce7514a9b55305d0b3169ece NA Primary Tumor C3L-06311-05 +C3L-06333.miRNA-Seq.T C3L-06333 CM miRNA-Seq tumor CPT0362100006 221103_UNC51-VH00562_145_AAAVKL3HV_ATGTCA_S8_L001_R1_001.unaln.bam 452691276 BAM NA 43edd9ad-6727-4064-a85b-196ee2d270e4 24fd8fcf8d4557505717d9b824474a1f NA Primary Tumor C3L-06333-01 +C3L-06338.miRNA-Seq.T C3L-06338 CM miRNA-Seq tumor CPT0363410006 221103_UNC51-VH00562_145_AAAVKL3HV_TAGCTT_S41_L001_R1_001.unaln.bam 404144806 BAM NA 47194d5c-9287-453c-a2e7-a2b15d0f9368 a2dce896f5a05a5bb04ff9337c42fed8 NA Primary Tumor C3L-06338-03 +C3L-06339.miRNA-Seq.T C3L-06339 CM miRNA-Seq tumor CPT0362880006 221103_UNC51-VH00562_145_AAAVKL3HV_GTAGAG_S34_L001_R1_001.unaln.bam 398023402 BAM NA d99917b7-93b9-4674-b2ee-fd20bb86d74c 0080d9967118876d50ff45013a597291 NA Primary Tumor C3L-06339-01 +C3L-06349.miRNA-Seq.T C3L-06349 CM miRNA-Seq tumor CPT0362770006 221103_UNC51-VH00562_145_AAAVKL3HV_CCGTCC_S20_L001_R1_001.unaln.bam 542279329 BAM NA 1395328d-5488-4a87-ad62-b08716a5f469 e262417fb7b85189b2cf06f9774317e5 NA Primary Tumor C3L-06349-01 C3L-06352.MethArray.Green.Tpb C3L-06352 AML Methylation Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Grn.idat 13677900 IDAT Green 1d1c7158-0399-487d-b0c4-1ffee98a8a69 055d537c5585acfbc599cdaef8780f3a NA Primary Blood Derived Cancer - Peripheral Blood C3L-06352-55 C3L-06352.MethArray.Red.Tpb C3L-06352 AML Methylation Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Red.idat 13677900 IDAT Red 49fca346-5913-4a2f-9a98-7bd5933f9003 3c4e93258408c0184ef883170f4f7722 NA Primary Blood Derived Cancer - Peripheral Blood C3L-06352-55 C3L-06352.miRNA-Seq.Tpb C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L001_R1_001.unaln.bam 205706771 BAM NA d956c69e-9c39-4a59-bba7-07646578e580 8d85195c2d541157f78c189911be2061 NA Primary Blood Derived Cancer - Peripheral Blood C3L-06352-56 @@ -19243,6 +19328,14 @@ C3L-06386.WXS.Nbc C3L-06386 AML WXS buccal_normal CPT0410880001 CPT0410880001.Wh C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal CPT0410880001 c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM NA 27966373-38a4-4697-8eda-28539d19e5c6 1727d000f969394e9d9037f868a7d107 hg38 Buccal Cell Normal C3L-06386-50,C3L-06386-51,C3L-06386-52 C3L-06386.WXS.Tbm C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeExome.RP-1303.bam 30377003817 BAM NA 6d231bd0-0b90-45fb-be2e-c250cb554e7c 75c64f3b29c3ec79cd7a50bd96633565 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-06386-54 C3L-06386.WXS.Tbm.hg38 C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wxs_gdc_realn.bam 42237742138 BAM NA 73f8f70a-98d4-4df8-89f2-596e281d1dc7 36e60a84e228d0dfe7cc5f2222e85c3e hg38 Primary Blood Derived Cancer - Bone Marrow C3L-06386-54 +C3L-06395.miRNA-Seq.T C3L-06395 CM miRNA-Seq tumor CPT0363100006 221103_UNC51-VH00562_145_AAAVKL3HV_GTGAAA_S36_L001_R1_001.unaln.bam 478449339 BAM NA 284a5cc0-a3ec-4584-87ca-419f1b61660f c31b50c597860a9a1ae0e235acc7d01d NA Primary Tumor C3L-06395-05 +C3L-06424.miRNA-Seq.A C3L-06424 CM miRNA-Seq tissue_normal CPT0335120010 221118_UNC51-VH00562_156_AAAV2MKHV_TACAGC_S36_L001_R1_001.unaln.bam 448611796 BAM NA b1d39cb6-069d-4631-837c-6c01a9b86fc6 eeb0f23e502c67183214f61bde361c93 NA Solid Tissue Normal C3L-06424-03 +C3L-06424.miRNA-Seq.T C3L-06424 CM miRNA-Seq tumor CPT0335090009 221109_UNC51-VH00562_149_AAAV5CLHV_GACGAC_S28_L001_R1_001.unaln.bam 377422238 BAM NA 4d1f71d7-3b66-486e-ae07-519987490a7c 472200df117c25925057b1e7c630c590 NA Primary Tumor C3L-06424-02 +C3L-06427.miRNA-Seq.T C3L-06427 CM miRNA-Seq tumor CPT0373310009 221109_UNC51-VH00562_149_AAAV5CLHV_TCGAAG_S45_L001_R1_001.unaln.bam 337565761 BAM NA 5334d739-879f-4177-bded-1d0f6bf3c809 a02f7eb21f38f89ae3052db6492c8237 NA Primary Tumor C3L-06427-03 +C3L-06428.miRNA-Seq.T C3L-06428 CM miRNA-Seq tumor CPT0335270009 221109_UNC51-VH00562_149_AAAV5CLHV_TAATCG_S39_L001_R1_001.unaln.bam 337152551 BAM NA 2b4203f3-eb2e-4ef4-a568-1f44f633fd39 5f8adc4776bd2b981379691aa1d276d4 NA Primary Tumor C3L-06428-02 +C3L-06430.miRNA-Seq.T C3L-06430 CM miRNA-Seq tumor CPT0393390006 221103_UNC51-VH00562_145_AAAVKL3HV_CAACTA_S11_L001_R1_001.unaln.bam 478537780 BAM NA d23030f4-ea93-4117-9f15-223a2a83a4be 4de8f05f2b0afa2d4361af902f46124d NA Primary Tumor C3L-06430-07 +C3L-06433.miRNA-Seq.T C3L-06433 CM miRNA-Seq tumor CPT0335430009 221109_UNC51-VH00562_149_AAAV5CLHV_TACAGC_S40_L001_R1_001.unaln.bam 338563992 BAM NA 72004c69-e9c9-4971-a4ff-92bd63e53a3c 2800bc0ffb592fbaf376b54f51f469cf NA Primary Tumor C3L-06433-01 +C3L-06435.miRNA-Seq.T C3L-06435 CM miRNA-Seq tumor CPT0373330009 221109_UNC51-VH00562_149_AAAV5CLHV_TCGGCA_S46_L001_R1_001.unaln.bam 322906187 BAM NA 779444a2-deb5-40e8-b816-6b951c255ba2 44acd0e056115797a146cc374e12d003 NA Primary Tumor C3L-06435-01 C3L-06534.MethArray.Green.Tbm C3L-06534 AML Methylation Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Grn.idat 13677955 IDAT Green 6afaf6c3-283a-4238-96e3-efbfa196ea4f ca475f5a1f5644658b12474b91e8a12c NA Primary Blood Derived Cancer - Bone Marrow C3L-06534-54 C3L-06534.MethArray.Red.Tbm C3L-06534 AML Methylation Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Red.idat 13677955 IDAT Red c8ba1d9e-66d0-4570-a96d-1bf67567e4e4 74e1fdfe870f4c69cfc627d16fee2f9c NA Primary Blood Derived Cancer - Bone Marrow C3L-06534-54 C3L-06534.miRNA-Seq.Tbm C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTAGCT_S49_L008_R1_001.unaln.bam 280032746 BAM NA a0f1ca8f-7fb4-4b4b-8a7f-1bd43737e2ad 7e11b732e12156a5cbd301fa63a4a7ad NA Primary Blood Derived Cancer - Bone Marrow C3L-06534-55 @@ -19403,6 +19496,8 @@ C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal CPT0405340002 CPT0405340002.Whole C3L-06625.WXS.N.hg38 C3L-06625 GBM WXS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wxs_gdc_realn.bam 37479287643 BAM NA 12c76c83-4c16-4016-8594-e04207caf5e5 4cb124ebccd8b6f4e4db576091fefcf1 hg38 Blood Derived Normal C3L-06625-31 C3L-06625.WXS.T C3L-06625 GBM WXS tumor CPT0406420007 CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM NA 890457f0-bee4-4471-aab4-2343d2d208a9 6f3a7ebac22acfdd7c23ac434b160fe9 hg19 Primary Tumor C3L-06625-01 C3L-06625.WXS.T.hg38 C3L-06625 GBM WXS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wxs_gdc_realn.bam 32707416253 BAM NA 926f6d61-0f53-4923-96cf-73626b0e0fe7 18ec221717fef1fa4068eefa8a88413f hg38 Primary Tumor C3L-06625-01 +C3L-06715.miRNA-Seq.A C3L-06715 CM miRNA-Seq tissue_normal CPT0373010012 221103_UNC51-VH00562_145_AAAVKL3HV_ACTGAT_S2_L001_R1_001.unaln.bam 449381725 BAM NA 67f66037-498a-4248-ac26-01d9bbf8d640 bd0d08f2e7770a7fa6ee50d3e26e1805 NA Solid Tissue Normal C3L-06715-03 +C3L-06715.miRNA-Seq.T C3L-06715 CM miRNA-Seq tumor CPT0373420009 221103_UNC51-VH00562_145_AAAVKL3HV_ATCACG_S6_L001_R1_001.unaln.bam 235827690 BAM NA 438e5bdd-7719-43bd-bfc8-88c484491b25 c4855d8f5eaf320a227a13377f80ba3c NA Primary Tumor C3L-06715-01 C3L-06801.MethArray.Green.Tbm C3L-06801 AML Methylation Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Grn.idat 13677888 IDAT Green 12a60d2f-182b-4cbd-93bf-75957731562a 130c1c5738449f2c5c03e6d1d4349647 NA Primary Blood Derived Cancer - Bone Marrow C3L-06801-54 C3L-06801.MethArray.Red.Tbm C3L-06801 AML Methylation Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Red.idat 13677888 IDAT Red 3b21f869-af3f-4fcf-ba4e-e44ef358a88b 8ade34335c6249cbec15f3c10c04e546 NA Primary Blood Derived Cancer - Bone Marrow C3L-06801-54 C3L-06801.miRNA-Seq.Tbm C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCGTCC_S30_L002_R1_001.unaln.bam 197434802 BAM NA 8a58be63-7a82-467d-8cc6-e2de62e31624 e1c278ecf3f8ee47fe0402f11a27e0d7 NA Primary Blood Derived Cancer - Bone Marrow C3L-06801-55 @@ -19501,6 +19596,7 @@ C3L-06912.WGS.N C3L-06912 LGG WGS blood_normal CPT0389050005 CPT0389050005.Whole C3L-06912.WGS.N.hg38 C3L-06912 LGG WGS blood_normal CPT0389050005 b61c8ac3-5e86-4b02-a3aa-e97d6b726278_wgs_gdc_realn.bam 208686775527 BAM NA d460cddb-a3c7-4d98-81d7-b8ba85d26d9f 71aff830a35e54295f5234eff72d4f0f hg38 Blood Derived Normal C3L-06912-31 C3L-06912.WGS.T C3L-06912 LGG WGS tumor CPT0388940011 CPT0388940011.WholeGenome.RP-2158.bam 129779104068 BAM NA b6f271ab-8986-4465-a214-f06c7e3b3d37 47ba8b844ec46eb1b3c81ca285afc00f hg19 Primary Tumor C3L-06912-01 C3L-06912.WGS.T.hg38 C3L-06912 LGG WGS tumor CPT0388940011 cd25fa75-5b4a-422b-93b9-7e1c7c7c36af_wgs_gdc_realn.bam 389435165923 BAM NA 89e198c5-0392-47c0-943f-4f4a95fa8275 b584aa63fb506398d82b2148028ae839 hg38 Primary Tumor C3L-06912-01 +C3L-06933.miRNA-Seq.T C3L-06933 CM miRNA-Seq tumor CPT0422570006 221103_UNC51-VH00562_145_AAAVKL3HV_CACCGG_S12_L001_R1_001.unaln.bam 383120957 BAM NA 6da253c9-49d2-4675-b438-81e2a7cd2f09 9ec4372455aff80bbef12a9972993a9a NA Primary Tumor C3L-06933-01 C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 C3L-06951.miRNA-Seq.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM NA b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-57 @@ -19750,6 +19846,7 @@ C3L-07037.RNA-Seq.genomic.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT03479100 C3L-07037.RNA-Seq.R1.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ NA 3399328b-16f5-4c7a-8e1f-338368645ed8 3619b3194ff2aa47564da23b1342f5af NA Solid Tissue Normal C3L-07037-01 C3L-07037.RNA-Seq.R2.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ NA db70a6b8-672d-4a13-bd16-bd52d87843fe 5260fcae215a5f3e074db2f6ad879f33 NA Solid Tissue Normal C3L-07037-01 C3L-07037.RNA-Seq.transcriptome.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.transcriptome.gdc_realn.bam 10569505762 BAM transcriptome 291861f3-2e47-4cac-a807-589bdf58c20c ff694eda7618b8f8c68456fdb8bf244c hg38 Solid Tissue Normal C3L-07037-01 +C3L-07111.miRNA-Seq.A C3L-07111 CM miRNA-Seq tissue_normal CPT0411050009 221103_UNC51-VH00562_145_AAAVKL3HV_CCAACA_S19_L001_R1_001.unaln.bam 351001356 BAM NA f233b5aa-4ca8-420a-baa6-fb9a06e0ed10 f904e79631370ba9ab6da7e534360503 NA Solid Tissue Normal C3L-07111-06 C3L-07202.MethArray.Green.T C3L-07202 GBM Methylation Array tumor CPT0407650010 205555390174_R06C01_Grn.idat 13677965 IDAT Green 222960f7-20b1-4046-b15e-2511a9aaf42f 851fa7f6e1508cf64bb570adc2048557 NA Primary Tumor C3L-07202-01 C3L-07202.MethArray.Red.T C3L-07202 GBM Methylation Array tumor CPT0407650010 205555390174_R06C01_Red.idat 13677965 IDAT Red ceb8a577-4b0b-47d0-a640-a597c25da03b acc01d2fb102ab19fc4536a3acba6e8d NA Primary Tumor C3L-07202-01 C3L-07202.miRNA-Seq.T C3L-07202 GBM miRNA-Seq tumor CPT0407650007 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L005_R1_001.unaln.bam 142731958 BAM NA bafbc425-2aa6-4d3b-9147-84e2537a3d4a e338bb6ee677f9faa5edc4db5b6920cc NA Primary Tumor C3L-07202-01 @@ -20440,8 +20537,10 @@ C3N-00177.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020120009 e4eff64c-93e3-4395- C3N-00179.MethArray.Green.T C3N-00179 CM Methylation Array tumor CPT0019940009 202178770100_R06C01_Grn.idat 13676235 IDAT Green fb8958aa-8382-49b9-a936-01bfb417ac86 65adf800f44d7f06ff4835a66285e045 NA Primary Tumor C3N-00179-03 C3N-00179.MethArray.Red.T C3N-00179 CM Methylation Array tumor CPT0019940009 202178770100_R06C01_Red.idat 13676235 IDAT Red 061a782d-b688-4ffd-aefe-1538c5ce339b eec109a4ea0a8b16059a4a989bd97240 NA Primary Tumor C3N-00179-03 C3N-00179.miRNA-Seq.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 181119_UNC31-K00269_0165_AH27WCBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 157988960 BAM NA 08b0ea2d-7e07-4125-8103-f520f2d29eae 9338b84c19cb3ce787f4851699611758 NA Solid Tissue Normal C3N-00179-06 +C3N-00179.miRNA-Seq.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 221111_UNC51-VH00562_151_AAATWY5HV_ACTGAT_S2_L001_R1_001.unaln.bam 396323398 BAM NA 8ffdd989-972f-4420-9133-6d01b74ecf8c 87e05c9b390ef5e0aa21504a336ce0f5 NA Solid Tissue Normal C3N-00179-06 C3N-00179.miRNA-Seq.A.hg38 C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 10b609f0-b6e9-40a9-9d11-9a20ebd1fbc4_mirnaseq_gdc_realn.bam 181050678 BAM NA 03eff811-0027-4e4d-b3d0-2666983fa6a9 3bfcf2c5eacbc0bf19c83ff7a5b767f8 hg38 Solid Tissue Normal C3N-00179-06 C3N-00179.miRNA-Seq.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L005_R1_001.unaln.bam 184122693 BAM NA 9bdd17b5-d312-4dd8-90d2-6858d9bd999a e0eb85e3128bc004a7ce09a0e8f91bf5 NA Primary Tumor C3N-00179-03 +C3N-00179.miRNA-Seq.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 221118_UNC51-VH00562_156_AAAV2MKHV_CAACTA_S9_L001_R1_001.unaln.bam 512982005 BAM NA b99740f2-45d4-4945-8428-763cafe94107 41b82adf7981a9cce43bcaf695b153a6 NA Primary Tumor C3N-00179-03 C3N-00179.miRNA-Seq.T.hg38 C3N-00179 CM miRNA-Seq tumor CPT0019940014 38590989-1eaf-4665-86c5-f1452536afb4_mirnaseq_gdc_realn.bam 192722490 BAM NA e1935714-a35e-41f5-a5c1-2313ddc36543 58c45f3c6ebc494a741c186d19d9eb25 hg38 Primary Tumor C3N-00179-03 C3N-00179.RNA-Seq.chimeric.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.chimeric.gdc_realn.bam 23565563 BAM chimeric c6e615d2-cccf-4c24-ae20-c5e4e4d2b0de 9ec4892fd2e95998731e792dd69deb41 hg38 Solid Tissue Normal C3N-00179-06 C3N-00179.RNA-Seq.chimeric.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.chimeric.gdc_realn.bam 77306360 BAM chimeric 4831222a-44f0-4282-b596-95110837d8db 9fa202043a2489313338ffefd7bb163c hg38 Primary Tumor C3N-00179-03 @@ -20690,6 +20789,8 @@ C3N-00204.WXS.N C3N-00204 HNSCC WXS blood_normal CPT0085320002 CPT0085320002.Who C3N-00204.WXS.N.hg38 C3N-00204 HNSCC WXS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wxs_gdc_realn.bam 34063720268 BAM NA ea384a65-ca41-4c64-b65a-16f62bbd9604 b0133868e644ac458c71194d5d007c45 hg38 Blood Derived Normal C3N-00204-31 C3N-00204.WXS.T C3N-00204 HNSCC WXS tumor CPT0084630012 CPT0084630012.WholeExome.RP-1303.bam 49922626049 BAM NA d9f42f05-a3ac-4b50-bf96-595185f860d3 102d50fa94dadac76d4b412f2304eaaa hg19 Primary Tumor C3N-00204-02,C3N-00204-03,C3N-00204-04 C3N-00204.WXS.T.hg38 C3N-00204 HNSCC WXS tumor CPT0084630012 5eab67d6-ad15-43ea-b7d4-265945e3ba09_wxs_gdc_realn.bam 69573604165 BAM NA e5b8a4d8-f631-4852-afd2-8aa05e1a2267 4be77a335c7c413825efe3ec627984a0 hg38 Primary Tumor C3N-00204-02,C3N-00204-03,C3N-00204-04 +C3N-00209.miRNA-Seq.A C3N-00209 CM miRNA-Seq tissue_normal CPT0084710008 221111_UNC51-VH00562_151_AAATWY5HV_CAGGCG_S16_L001_R1_001.unaln.bam 382862650 BAM NA f24d8e96-09d5-4314-a4bf-7579e9f235c0 9dc1ca5dc91a94322d5fa6c59518193e NA Solid Tissue Normal C3N-00209-06 +C3N-00209.miRNA-Seq.T C3N-00209 CM miRNA-Seq tumor CPT0084690007 221111_UNC51-VH00562_151_AAATWY5HV_ACTTGA_S3_L001_R1_001.unaln.bam 219532714 BAM NA db3cf3d1-894f-4e24-80fb-ed6614dc4d4f ef0ceba71c317c69be1fb2bd205fb8a8 NA Primary Tumor C3N-00209-03 C3N-00211.MethArray.Green.T C3N-00211 LSCC Methylation Array tumor CPT0090440009 202234370119_R04C01_Grn.idat 13676231 IDAT Green b53eacf1-5189-4388-ab8a-ee4fcf8bd8a3 c12f9c2783aa433deee582063063cb21 NA Primary Tumor C3N-00211-01 C3N-00211.MethArray.Red.T C3N-00211 LSCC Methylation Array tumor CPT0090440009 202234370119_R04C01_Red.idat 13676231 IDAT Red 82b90a99-b0ea-47a6-9988-86afa458c304 4188430680661b8603d5d04a18556a11 NA Primary Tumor C3N-00211-01 C3N-00211.miRNA-Seq.T C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L002_R1_001.unaln.bam 734277190 BAM NA be6461f0-fa53-47f5-a156-8d6704c0220e 918485b323551f56574a26d0a612f66e NA Primary Tumor C3N-00211-01 @@ -20731,8 +20832,8 @@ C3N-00217.WGS.N C3N-00217 LUAD WGS blood_normal CPT0092500002 CPT0092500002.Whol C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM NA 7c0fa13b-ae71-42df-800a-a9480cc67133 c53a7e2b9034753a377407f251aa13af hg38 Blood Derived Normal C3N-00217-31 C3N-00217.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010 CPT0090570010.WholeGenome.RP-1303.bam 77202007467 BAM NA c0c2069c-1cd9-4e3b-ae40-4617f7c010dd 2cd3b8753fec2a69f03f85c588e0d6bb hg19 Primary Tumor C3N-00217-02,C3N-00217-04 C3N-00217.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wgs_gdc_realn.bam 111488141459 BAM NA c3101c27-4922-4e8e-890a-d8f838e04751 88e105dd4bc8e4e64dfe5d24c7fc1f75 hg38 Primary Tumor C3N-00217-02,C3N-00217-04 -C3N-00217.WGS.T.UNK_k2PnDB6 C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM NA b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e hg19 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters -C3N-00217.WGS.T.UNK_k2PnDB6.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM NA 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da hg38 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3N-00217.WGS.T.UNK_k2PnDB6 C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM NA b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e hg19 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-00217.WGS.T.UNK_k2PnDB6.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM NA 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da hg38 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3N-00217.WXS.A C3N-00217 LUAD WXS tissue_normal CPT0090600009 CPT0090600009.WholeExome.RP-1303.bam 35193499504 BAM NA a81d1be0-5e52-42a1-877e-6e3354c41ae0 049a85e9fe159a49f5b954c1d6c6bfb1 hg19 Solid Tissue Normal C3N-00217-06 C3N-00217.WXS.A.hg38 C3N-00217 LUAD WXS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wxs_gdc_realn.bam 48560284391 BAM NA bb1871eb-69df-4c1e-a654-bd2212f6a763 d76fd0c2027b4f42ed025ef3a60fefc1 hg38 Solid Tissue Normal C3N-00217-06 C3N-00217.WXS.N C3N-00217 LUAD WXS blood_normal CPT0092500002 CPT0092500002.WholeExome.RP-1303.bam 25344310806 BAM NA b6c851ae-dc4e-4364-91ce-87754a3cd60f 23d61aac67f08a677639acdd786f8e2e hg19 Blood Derived Normal C3N-00217-31 @@ -25211,7 +25312,9 @@ C3N-01079.WXS.N.hg38 C3N-01079 UCEC WXS blood_normal CPT0211240002 58064c6a-c59b C3N-01079.WXS.T C3N-01079 UCEC WXS tumor CPT0211120007 CPT0211120007.WholeExome.RP-1303.bam 23292018621 BAM NA 6deaf1ce-6405-47e4-9967-cda4828ab11b a2e9339384b45ab1efe21acb3318ed1a hg19 Primary Tumor C3N-01079-01 C3N-01079.WXS.T.hg38 C3N-01079 UCEC WXS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wxs_gdc_realn.bam 32289014569 BAM NA 8e90126a-f7b3-4e3c-be03-9bc5649de5d4 da1ffdb7c7837a94dfffc206405e3064 hg38 Primary Tumor C3N-01079-01 C3N-01080.MethArray.Green.A C3N-01080 CCRCC Methylation Array tissue_normal CPT0211340006 204930630081_R03C01_Grn.idat 13677885 IDAT Green f524b12a-703c-4bbb-852c-4388a7988fc1 01e9ebee992df49b3e3308cfb01d96c7 NA Solid Tissue Normal C3N-01080-06 +C3N-01080.MethArray.Green.T C3N-01080 CCRCC Methylation Array tumor CPT0211320006 203219640095_R07C01_Grn.idat 13676216 IDAT Green 500f1bc6-cd94-405b-9414-b70e60484a08 969425da800e3183fd0f01f8a73f47dd NA Primary Tumor C3N-01080-03 C3N-01080.MethArray.Red.A C3N-01080 CCRCC Methylation Array tissue_normal CPT0211340006 204930630081_R03C01_Red.idat 13677885 IDAT Red 1234a8af-5e29-4859-ad25-0f53b753ac0d 036d93ef8e5b5f93eb30772086e125ff NA Solid Tissue Normal C3N-01080-06 +C3N-01080.MethArray.Red.T C3N-01080 CCRCC Methylation Array tumor CPT0211320006 203219640095_R07C01_Red.idat 13676216 IDAT Red 9b1a2bb1-8cee-49a7-8931-8a2fbb8eb6f5 83c25f2997d008337ee6ad449c7238c9 NA Primary Tumor C3N-01080-03 C3N-01080.miRNA-Seq.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L003_R1_001.unaln.bam 152442457 BAM NA d0947c5c-0531-4424-b590-6f3788393d77 b4a2508cb9f338ef87175ea1ce555404 NA Solid Tissue Normal C3N-01080-06 C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM NA 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 hg38 Solid Tissue Normal C3N-01080-06 C3N-01080.miRNA-Seq.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM NA b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f NA Primary Tumor C3N-01080-03 @@ -27195,6 +27298,7 @@ C3N-01419.WXS.N C3N-01419 LUAD WXS blood_normal CPT0119310002 CPT0119310002.Whol C3N-01419.WXS.N.hg38 C3N-01419 LUAD WXS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wxs_gdc_realn.bam 22949472162 BAM NA 7bad8534-983e-4be5-95ac-1b2c6a264267 b7c07b191129f30704a47d9b93003305 hg38 Blood Derived Normal C3N-01419-75 C3N-01419.WXS.T C3N-01419 LUAD WXS tumor CPT0118040009 CPT0118040009.WholeExome.RP-1303.bam 22614668149 BAM NA 64662474-47f1-4aeb-8139-517018852172 61acffc16f8911b63f4e802823f55fdc hg19 Primary Tumor C3N-01419-03 C3N-01419.WXS.T.hg38 C3N-01419 LUAD WXS tumor CPT0118040009 b6f5e659-0d84-4f62-b599-914804ce42fb_wxs_gdc_realn.bam 31152710196 BAM NA fd2a837e-1888-4a62-b3f6-0c460ddb6660 949aaae458c3eee27659c18dbf3a102d hg38 Primary Tumor C3N-01419-03 +C3N-01481.miRNA-Seq.T C3N-01481 CM miRNA-Seq tumor CPT0105810009 221111_UNC51-VH00562_151_AAATWY5HV_AGTCAA_S4_L001_R1_001.unaln.bam 380837939 BAM NA 543f6aa7-ee96-42e0-923e-b0f09cf800fe 9ea99f96ac320c8c397e139ef984e939 NA Primary Tumor C3N-01481-01 C3N-01488.MethArray.Green.A C3N-01488 LUAD Methylation Array tissue_normal CPT0118180009 203027380028_R05C01_Grn.idat 13676241 IDAT Green 76583378-97ff-4ad6-8e23-2c7c1b325000 82a38fb371bf24781861bb02b62037f3 NA Solid Tissue Normal C3N-01488-06 C3N-01488.MethArray.Green.T C3N-01488 LUAD Methylation Array tumor CPT0118160009 202234370119_R06C01_Grn.idat 13676231 IDAT Green 4a4e6ee3-5da1-48aa-b06c-38779c1a0192 b360d5b8c605b4b243ebd0003c82ffe2 NA Primary Tumor C3N-01488-03 C3N-01488.MethArray.Red.A C3N-01488 LUAD Methylation Array tissue_normal CPT0118180009 203027380028_R05C01_Red.idat 13676241 IDAT Red 5fab6cee-f771-4ff7-9f1c-bd5a11196343 9729619f6bbf8437eb0a2e5fee424f04 NA Solid Tissue Normal C3N-01488-06 @@ -27255,6 +27359,10 @@ C3N-01489.WXS.N C3N-01489 LUAD WXS blood_normal CPT0108270002 CPT0108270002.Whol C3N-01489.WXS.N.hg38 C3N-01489 LUAD WXS blood_normal CPT0108270002 109c49c2-5da7-479e-ae3e-2faf07ae9244_wxs_gdc_realn.bam 52853972717 BAM NA c5a6d394-659c-43cf-8b4f-e7d637d4430e 8c92834850224b4191d13c739688a5ed hg38 Blood Derived Normal C3N-01489-31,C3N-01489-71 C3N-01489.WXS.T C3N-01489 LUAD WXS tumor CPT0105940009 CPT0105940009.WholeExome.RP-1303.bam 26982320409 BAM NA f57b6c5a-2e3c-410f-b0ed-db06b57bb59c 23e643c40a6e93f0a5dab549e5dd04e0 hg19 Primary Tumor C3N-01489-02 C3N-01489.WXS.T.hg38 C3N-01489 LUAD WXS tumor CPT0105940009 430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wxs_gdc_realn.bam 37205601233 BAM NA 78b86af9-8dec-45da-b00f-211f7ac8c5e2 7f6b6c008769818e6945592314369eca hg38 Primary Tumor C3N-01489-02 +C3N-01493.miRNA-Seq.A C3N-01493 CM miRNA-Seq tissue_normal CPT0106090009 221118_UNC51-VH00562_156_AAAV2MKHV_CACTCA_S12_L001_R1_001.unaln.bam 293853677 BAM NA 903bd10c-f3d3-4646-94da-f901c06f3538 d7defd5625d2b1180ce34d34f6e0b900 NA Solid Tissue Normal C3N-01493-07 +C3N-01493.miRNA-Seq.T C3N-01493 CM miRNA-Seq tumor CPT0106070009 221111_UNC51-VH00562_151_AAATWY5HV_GATCAG_S30_L001_R1_001.unaln.bam 437686724 BAM NA 7b056f71-b459-4ac9-a8e5-96b69469cd59 70662e48ca4bff0db1d579738674afa8 NA Primary Tumor C3N-01493-04 +C3N-01494.miRNA-Seq.T C3N-01494 CM miRNA-Seq tumor CPT0106200009 221111_UNC51-VH00562_151_AAATWY5HV_AGTTCC_S5_L001_R1_001.unaln.bam 398508145 BAM NA 71c18c17-4b7a-438b-85c5-b95f2cbc0930 ee8b8001ad6469486c87e33e434a7c17 NA Primary Tumor C3N-01494-03 +C3N-01495.miRNA-Seq.T C3N-01495 CM miRNA-Seq tumor CPT0213080010 221111_UNC51-VH00562_151_AAATWY5HV_TATAAT_S42_L001_R1_001.unaln.bam 263708202 BAM NA a214b863-c682-4460-bb53-b4af0ba04e34 d07b1326aa28298cad0f9e859964e75a NA Primary Tumor C3N-01495-01,C3N-01495-02 C3N-01502.MethArray.Green.T.DEEP_rp63A6 C3N-01502 PDA Methylation Array tumor CPT0065570009 202184990052_R06C01_Grn.idat 13676226 IDAT Green 679f1d0f-c921-4325-b404-260a475ccc44 cf7581ce6f668c7e900511a5c235e58e NA Primary Tumor C3N-01502-01 sample_tag=DEEP_rp63A6 Duplicate item: Additional DNA for PDA Deep Sequencing C3N-01502.MethArray.Red.T.DEEP_rp63A6 C3N-01502 PDA Methylation Array tumor CPT0065570009 202184990052_R06C01_Red.idat 13676226 IDAT Red 8a8e12dc-7e97-4f17-9755-17c6fe9285b0 df448cb5b05c10f815e3f7a2bdc6e4ea NA Primary Tumor C3N-01502-01 sample_tag=DEEP_rp63A6 Duplicate item: Additional DNA for PDA Deep Sequencing C3N-01502.miRNA-Seq.T C3N-01502 PDA miRNA-Seq tumor CPT0065570006 181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 224703888 BAM NA 3bb977cf-f8b0-4be3-8233-c7774353fe60 dc69d96706a1a44780fd220d710b00ab NA Primary Tumor C3N-01502-01 @@ -27657,6 +27765,9 @@ C3N-01529.WXS.N C3N-01529 UCEC WXS blood_normal CPT0097470002 CPT0097470002.Whol C3N-01529.WXS.N.hg38 C3N-01529 UCEC WXS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wxs_gdc_realn.bam 65690263407 BAM NA e98e0298-2b45-4c60-ae37-fd3d7b29a777 91d34bbae41f8c04d8441535098386a2 hg38 Blood Derived Normal C3N-01529-31,C3N-01529-71 C3N-01529.WXS.T C3N-01529 UCEC WXS tumor CPT0097440009 CPT0097440009.WholeExome.RP-1303.bam 41482211502 BAM NA 96fc723e-da7e-4360-9028-100cfbf9af6a 3d5104233cce6bb826b7871a556b2db2 hg19 Primary Tumor C3N-01529-02 C3N-01529.WXS.T.hg38 C3N-01529 UCEC WXS tumor CPT0097440009 f5ca6776-3248-415a-86d1-48ec87f211d6_wxs_gdc_realn.bam 56483401842 BAM NA 91cf1023-d004-44d3-9fde-b9a7615a8aa2 910ac656d80561865706663d20e8de37 hg38 Primary Tumor C3N-01529-02 +C3N-01530.miRNA-Seq.A C3N-01530 CM miRNA-Seq tissue_normal CPT0096180005 221111_UNC51-VH00562_151_AAATWY5HV_ATTCCT_S9_L001_R1_001.unaln.bam 440696058 BAM NA 83add14e-43a5-495f-925d-69d6f4cff098 f0f53a33fd14ed202fdfebd9161a842d NA Solid Tissue Normal C3N-01530-06 +C3N-01530.miRNA-Seq.T C3N-01530 CM miRNA-Seq tumor CPT0096150006 221111_UNC51-VH00562_151_AAATWY5HV_ACAGTG_S1_L001_R1_001.unaln.bam 452885692 BAM NA 74950563-ef8d-43d6-be6e-8188e795bbd8 5a3f2c04b080344359ac39a62d7c9a0e NA Primary Tumor C3N-01530-01 +C3N-01533.miRNA-Seq.T C3N-01533 CM miRNA-Seq tumor CPT0096450009 221111_UNC51-VH00562_151_AAATWY5HV_TAGCTT_S41_L001_R1_001.unaln.bam 442450476 BAM NA 749e137f-3967-4e18-8fa5-ebe883878e26 31302601de2087a0fb4a0a22f5775f71 NA Primary Tumor C3N-01533-03 C3N-01535.MethArray.Green.T C3N-01535 SAR Methylation Array tumor CPT0096740009 202234380069_R03C01_Grn.idat 13676246 IDAT Green 0ba9a00a-a40b-4d19-9761-d7b04c1eb048 f9bb50c3dc006bb73a4a1412437b1eac NA Primary Tumor C3N-01535-02 C3N-01535.MethArray.Red.T C3N-01535 SAR Methylation Array tumor CPT0096740009 202234380069_R03C01_Red.idat 13676246 IDAT Red 09829546-1d49-40a9-8115-81c5a5d8ae28 981d9abd3b3b0b20788f8c080ee470f4 NA Primary Tumor C3N-01535-02 C3N-01535.miRNA-Seq.A C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 181119_UNC31-K00269_0165_AH27WCBBXY_CGTACG_S46_L002_R1_001.unaln.bam 225624841 BAM NA 8b8b9381-56f9-4caf-962a-43dd16dde57c 619564677a70ac3ddac0699061fb0a3b NA Solid Tissue Normal C3N-01535-06 @@ -28775,14 +28886,16 @@ C3N-01823.WGS.N C3N-01823 LUAD WGS blood_normal CPT0097610002 CPT0097610002.Whol C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM NA 59fd9c47-a049-4483-90bf-3650711651ee 1d83c76bafae811ea4b81e87b3a0edb3 hg38 Blood Derived Normal C3N-01823-31,C3N-01823-71 C3N-01823.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009 CPT0097580009.WholeGenome.RP-1303.bam 65656450281 BAM NA c85d58e0-c631-494c-bd98-314a1dc8134e 66c86771c4dc933a8d6bc193c02d6d63 hg19 Primary Tumor C3N-01823-02 C3N-01823.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wgs_gdc_realn.bam 96055710690 BAM NA cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad ff311311a00abf25d13ba1cd79fd3578 hg38 Primary Tumor C3N-01823-02 -C3N-01823.WGS.T.UNK_mqAXELr C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM NA 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 hg19 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters -C3N-01823.WGS.T.UNK_mqAXELr.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM NA 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 hg38 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3N-01823.WGS.T.UNK_mqAXELr C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM NA 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 hg19 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-01823.WGS.T.UNK_mqAXELr.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM NA 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 hg38 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3N-01823.WXS.A C3N-01823 LUAD WXS tissue_normal CPT0097600009 CPT0097600009.WholeExome.RP-1303.bam 34217317088 BAM NA 771f8925-7283-4736-8e3e-f126c481e2f1 82c84f0a3406f45f76094bb7708a5972 hg19 Solid Tissue Normal C3N-01823-06 C3N-01823.WXS.A.hg38 C3N-01823 LUAD WXS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wxs_gdc_realn.bam 46062396631 BAM NA ae1ed438-07f1-44aa-9690-121cfdb635e9 e8d141483f556977231f0e4be01c39eb hg38 Solid Tissue Normal C3N-01823-06 C3N-01823.WXS.N C3N-01823 LUAD WXS blood_normal CPT0097610002 CPT0097610002.WholeExome.RP-1303.bam 26376253830 BAM NA 9609fe2a-7678-4fb7-aed1-37decce3b4a1 662777ce742428bf53774cd84174dcb2 hg19 Blood Derived Normal C3N-01823-31,C3N-01823-71 C3N-01823.WXS.N.hg38 C3N-01823 LUAD WXS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wxs_gdc_realn.bam 35435908121 BAM NA a59668f0-be1f-4eef-ac04-16e2a8d48d5f b0b049ff7b05bb08e037ba1e8ab596d7 hg38 Blood Derived Normal C3N-01823-31,C3N-01823-71 C3N-01823.WXS.T C3N-01823 LUAD WXS tumor CPT0097580009 CPT0097580009.WholeExome.RP-1303.bam 44032320229 BAM NA 3b24fc5b-267c-48ef-a8aa-6454383c5510 2e674956e05723940af2db20f3b1c9ac hg19 Primary Tumor C3N-01823-02 C3N-01823.WXS.T.hg38 C3N-01823 LUAD WXS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wxs_gdc_realn.bam 59887110671 BAM NA 4041925d-db9d-4daf-85da-8170f8864174 7ec0c47e58d8ac0693252094d54e780b hg38 Primary Tumor C3N-01823-02 +C3N-01824.miRNA-Seq.A C3N-01824 CM miRNA-Seq tissue_normal CPT0097180006 221111_UNC51-VH00562_151_AAATWY5HV_CAAAAG_S10_L001_R1_001.unaln.bam 449473935 BAM NA 638c9838-c799-46ba-a745-80594d8c04e7 4439cf4a90c4a34634c143abe738a91a NA Solid Tissue Normal C3N-01824-06 +C3N-01824.miRNA-Seq.T C3N-01824 CM miRNA-Seq tumor CPT0097170009 221111_UNC51-VH00562_151_AAATWY5HV_GGCTAC_S32_L001_R1_001.unaln.bam 483546523 BAM NA 5b7cdea5-77ab-4303-ba6f-9b38a4214e62 aea469920f0f04acbc1c9e94b63a66e9 NA Primary Tumor C3N-01824-03 C3N-01825.MethArray.Green.T.deprecated C3N-01825 UCEC Methylation Array tumor CPT0097710009 202234380054_R07C01_Grn.idat 13676231 IDAT Green b1b2e295-1918-4f45-8012-ca9b86c0e45f 03480cbaeb97b5025bb43ec77619e41c NA Primary Tumor C3N-01825-01 local_meta=.deprecated C3N-01825.MethArray.Green.T.RDNA_oBQ7nk C3N-01825 UCEC Methylation Array tumor CPT0097730006 203027390034_R07C01_Grn.idat 13676226 IDAT Green 75510140-ddf8-4f9d-9fc2-fed1fc4664ef f10207e7dec6315edfacfb80a40414eb NA Primary Tumor C3N-01825-03 sample_tag=RDNA_oBQ7nk Duplicate item: Replacement DNA Distribution - original aliquot failed C3N-01825.MethArray.Red.T.deprecated C3N-01825 UCEC Methylation Array tumor CPT0097710009 202234380054_R07C01_Red.idat 13676231 IDAT Red d6efa57b-46aa-4fd0-a252-7c2613c4fb2c 88dcdde8b18fd7c4a724f19873906457 NA Primary Tumor C3N-01825-01 local_meta=.deprecated @@ -28918,6 +29031,8 @@ C3N-01843.WXS.N C3N-01843 UCEC WXS blood_normal CPT0098310002 CPT0098310002.Whol C3N-01843.WXS.N.hg38 C3N-01843 UCEC WXS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wxs_gdc_realn.bam 41588850052 BAM NA 2c0022ef-c48f-48b0-9409-74cee5cd7fc1 51b55f1c6c36f5acfa6ee238fe700fb8 hg38 Blood Derived Normal C3N-01843-31,C3N-01843-71 C3N-01843.WXS.T C3N-01843 UCEC WXS tumor CPT0098270009 CPT0098270009.WholeExome.RP-1303.bam 44806548748 BAM NA 05532c1f-78aa-4bd4-81ba-7a970f7b4cc9 8f00868e261f02239d4df322e717397b hg19 Primary Tumor C3N-01843-01 C3N-01843.WXS.T.hg38 C3N-01843 UCEC WXS tumor CPT0098270009 982621a1-4bca-4b1e-ae32-15d4b9b860b6_wxs_gdc_realn.bam 62083337377 BAM NA 3519a923-e879-45d2-bfc1-1d76f173d915 f97dbae7e240e87b1d1f797cf685b555 hg38 Primary Tumor C3N-01843-01 +C3N-01844.miRNA-Seq.A C3N-01844 CM miRNA-Seq tissue_normal CPT0098440013 221118_UNC51-VH00562_156_AAAV2MKHV_CAGGCG_S14_L001_R1_001.unaln.bam 474400044 BAM NA 6ee3e9ef-1e13-460b-a708-6ae66663d6cf b5a29cadb9d1345ef29920bb43d16652 NA Solid Tissue Normal C3N-01844-06 +C3N-01844.miRNA-Seq.T C3N-01844 CM miRNA-Seq tumor CPT0098430009 221111_UNC51-VH00562_151_AAATWY5HV_CTTGTA_S27_L001_R1_001.unaln.bam 154425627 BAM NA 7fa50ee0-0684-4813-9d1d-5698d187811b 1e1f8dae239a32ae38f34cc8d3f3450b NA Primary Tumor C3N-01844-03 C3N-01846.MethArray.Green.A C3N-01846 LSCC Methylation Array tissue_normal CPT0098800009 203219650004_R03C01_Grn.idat 13676221 IDAT Green 6ec2cd5d-4f83-4ec5-b400-2f0b0a3d89bb a03387dca8937bf2ccae8bf84c73ebb7 NA Solid Tissue Normal C3N-01846-06 C3N-01846.MethArray.Green.T C3N-01846 LSCC Methylation Array tumor CPT0098770009 202234370091_R03C01_Grn.idat 13676231 IDAT Green ae46c687-b113-4f55-ae20-3120bba5f75b b041ea28087bda0cb3c9c34410ef324a NA Primary Tumor C3N-01846-01 C3N-01846.MethArray.Red.A C3N-01846 LSCC Methylation Array tissue_normal CPT0098800009 203219650004_R03C01_Red.idat 13676221 IDAT Red 586a946c-697a-4760-992a-ba355e2771f7 1d7523ec2e6195015757b14cf96272ef NA Solid Tissue Normal C3N-01846-06 @@ -30063,6 +30178,8 @@ C3N-02015.WXS.N C3N-02015 CCRCC WXS blood_normal CPT0116350002 CPT0116350002.Who C3N-02015.WXS.N.hg38 C3N-02015 CCRCC WXS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wxs_gdc_realn.bam 45895765263 BAM NA ac34ed55-1ecb-42d9-8f6e-62f481a84ffa 389c2daa417abce3e1c24a3a14b651b5 hg38 Blood Derived Normal C3N-02015-31 C3N-02015.WXS.T C3N-02015 CCRCC WXS tumor CPT0115350009 CPT0115350009.WholeExome.RP-1303.bam 23113584357 BAM NA 34535d65-9338-4186-a33c-8b91319f01aa 1d10078745ad3798f65403fac6e95c0d hg19 Primary Tumor C3N-02015-01 C3N-02015.WXS.T.hg38 C3N-02015 CCRCC WXS tumor CPT0115350009 51501cd8-6fd3-4be0-8012-0360affa0519_wxs_gdc_realn.bam 30882516573 BAM NA be150359-5e01-407b-9b7f-6e1c074e10db 1cd6e40d1d0641915066620fe0fe420b hg38 Primary Tumor C3N-02015-01 +C3N-02026.miRNA-Seq.A C3N-02026 CM miRNA-Seq tissue_normal CPT0133250008 221111_UNC51-VH00562_151_AAATWY5HV_CAACTA_S11_L001_R1_001.unaln.bam 439159314 BAM NA 3fcf1400-2384-4da0-aace-a52588a6666d 4305885b851a68a3a6da819f22aa3615 NA Solid Tissue Normal C3N-02026-06 +C3N-02026.miRNA-Seq.T C3N-02026 CM miRNA-Seq tumor CPT0133230006 221111_UNC51-VH00562_151_AAATWY5HV_GTAGAG_S34_L001_R1_001.unaln.bam 405496583 BAM NA 27ff7b29-02e2-47ce-9db7-6a045ae1197a c8fb24811e1ffe15b4b78e3a91acc295 NA Primary Tumor C3N-02026-02 C3N-02027.MethArray.Green.T C3N-02027 UCEC Methylation Array tumor CPT0133400011 203561450017_R03C01_Grn.idat 13676216 IDAT Green bd6816d9-665b-4f88-b95c-6822d046b682 571bbbab048733225213ec06067d0cde NA Primary Tumor C3N-02027-01 C3N-02027.MethArray.Red.T C3N-02027 UCEC Methylation Array tumor CPT0133400011 203561450017_R03C01_Red.idat 13676216 IDAT Red a448da82-b138-478c-94bf-a5785f24ad76 b9322a2c9ef267921ebcfee171a4ea4b NA Primary Tumor C3N-02027-01 C3N-02027.miRNA-Seq.T C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L003_R1_001.unaln.bam 267214195 BAM NA d62d9a02-c8ae-4dcd-a89a-8c1e542611ea 89190d59d0471cebb1e3254d96d80f15 NA Primary Tumor C3N-02027-01 @@ -30195,6 +30312,7 @@ C3N-02030.WXS.T.LMD_mvxPGp C3N-02030 UCEC WXS tumor CPT0133780092 CPT0133780092. C3N-02030.WXS.T.LMD_mvxPGp.hg38 C3N-02030 UCEC WXS tumor CPT0133780092 4811084b-1a9d-46c1-b3c9-702e65cbaf56_wxs_gdc_realn.bam 21424219326 BAM NA 61c562aa-afc1-4d23-8a43-1f4a1c236c05 7dbdba91e58f1c7c7bc06ce11c04a0f4 hg38 Primary Tumor C3N-02030-03 sample_tag=LMD_mvxPGp Duplicate item: UCEC LMD Heterogeneity Pilot C3N-02030.WXS.T.LMD_Y3LV4K C3N-02030 UCEC WXS tumor CPT0133760076 CPT0133760076.WholeExome.RP-1303.bam 29426464494 BAM NA 249d3a65-6ae3-4c88-a18e-574a63822f58 86764c18b30299620b9aefb171dbc1a7 hg19 Primary Tumor C3N-02030-01 sample_tag=LMD_Y3LV4K Duplicate item: UCEC LMD Heterogeneity Pilot C3N-02030.WXS.T.LMD_Y3LV4K.hg38 C3N-02030 UCEC WXS tumor CPT0133760076 0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wxs_gdc_realn.bam 40589787215 BAM NA 80bde6d6-cd8c-460d-ad2a-59f25c126a84 6edb21ff636d719ebfad317acf5eaf06 hg38 Primary Tumor C3N-02030-01 sample_tag=LMD_Y3LV4K Duplicate item: UCEC LMD Heterogeneity Pilot +C3N-02033.miRNA-Seq.T C3N-02033 CM miRNA-Seq tumor CPT0133960006 221111_UNC51-VH00562_151_AAATWY5HV_GTCCGC_S35_L001_R1_001.unaln.bam 400235224 BAM NA 9360fcc4-172f-4bff-97a8-8c76ac1552c0 a2158b8fca0dcd0a9efdf1fbf0a8d597 NA Primary Tumor C3N-02033-03 C3N-02061.MethArray.Green.T C3N-02061 UCEC Methylation Array tumor CPT0134310011 203561450046_R03C01_Grn.idat 13676211 IDAT Green 02d973a2-8f47-4edd-8f95-6f3b99c0a2d5 8aac8ced04423a898b71af6fc2de0e98 NA Primary Tumor C3N-02061-02 C3N-02061.MethArray.Red.T C3N-02061 UCEC Methylation Array tumor CPT0134310011 203561450046_R03C01_Red.idat 13676211 IDAT Red 89b1ec19-aa2e-4e6a-aab4-064c998b3e7c 92d6789381ec5e092c57d3ba9bc0871f NA Primary Tumor C3N-02061-02 C3N-02061.miRNA-Seq.T C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L004_R1_001.unaln.bam 255391443 BAM NA 04a69e12-15b8-44bd-b73f-c2607651671d 11fa6e1dcf54163807ed2928328ce156 NA Primary Tumor C3N-02061-02 @@ -31636,6 +31754,8 @@ C3N-02266.WXS.N C3N-02266 CCRCC WXS blood_normal CPT0188970002 CPT0188970002.Who C3N-02266.WXS.N.hg38 C3N-02266 CCRCC WXS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wxs_gdc_realn.bam 41022813328 BAM NA 504592ce-cb29-4aa8-ad82-fe315e661ff1 972d2a6089d4e48a2295a3276e8492e4 hg38 Blood Derived Normal C3N-02266-31 C3N-02266.WXS.T C3N-02266 CCRCC WXS tumor CPT0188950006 CPT0188950006.WholeExome.RP-1303.bam 20392433151 BAM NA 89373a12-c0c1-48a8-81c3-c9e0ca0165ca d886952273eda1c13d91faf2696e1883 hg19 Primary Tumor C3N-02266-01 C3N-02266.WXS.T.hg38 C3N-02266 CCRCC WXS tumor CPT0188950006 df1cc5c1-ec09-4329-b682-02cfe897e8af_wxs_gdc_realn.bam 28342817972 BAM NA 874e7360-bb66-4e48-a7e2-1f27c92dfd9d dd989f94e93021335c780805d29bfbea hg38 Primary Tumor C3N-02266-01 +C3N-02270.miRNA-Seq.A C3N-02270 CM miRNA-Seq tissue_normal CPT0182650008 221118_UNC51-VH00562_156_AAAV2MKHV_CACCGG_S10_L001_R1_001.unaln.bam 423922421 BAM NA e669d928-e8fe-4495-94e6-58603f5f01af e3f7d7f1eadcf73ab2c8ff70ee8a433b NA Solid Tissue Normal C3N-02270-05 +C3N-02270.miRNA-Seq.T C3N-02270 CM miRNA-Seq tumor CPT0182610010 221111_UNC51-VH00562_151_AAATWY5HV_CATGGC_S17_L001_R1_001.unaln.bam 294091582 BAM NA d51673b9-ee71-4776-9f8c-99771ac1811e f4718f861c466b5e4c43b53a507930f4 NA Primary Tumor C3N-02270-01,C3N-02270-02,C3N-02270-03,C3N-02270-04 C3N-02271.MethArray.Green.T C3N-02271 UCEC Methylation Array tumor CPT0181670011 203561450073_R05C01_Grn.idat 13676221 IDAT Green 5a44cb62-b701-4772-a9c7-7e6915066ae5 cd99041eae6d48f9067947a53734760e NA Primary Tumor C3N-02271-01 C3N-02271.MethArray.Red.T C3N-02271 UCEC Methylation Array tumor CPT0181670011 203561450073_R05C01_Red.idat 13676221 IDAT Red 2baf4c42-6876-4aac-ab8a-206980f61fe2 521e6dc2546623e8c296995c1174dd83 NA Primary Tumor C3N-02271-01 C3N-02271.miRNA-Seq.T C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 198650312 BAM NA 65f39fa3-a13c-4621-8c2c-d5875f83873c 56794a0cc9d68ee326e6ce4343e6c5e4 NA Primary Tumor C3N-02271-01 @@ -32080,6 +32200,12 @@ C3N-02302.WXS.N C3N-02302 UCEC WXS blood_normal CPT0181660002 CPT0181660002.Whol C3N-02302.WXS.N.hg38 C3N-02302 UCEC WXS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wxs_gdc_realn.bam 35013630318 BAM NA fd647e79-8bf9-4737-a55b-a0fb81c19af3 7c0aa4d84030551261e7905908f34674 hg38 Blood Derived Normal C3N-02302-31 C3N-02302.WXS.T C3N-02302 UCEC WXS tumor CPT0181610006 CPT0181610006.WholeExome.RP-1303.bam 30335238761 BAM NA b99e9f73-9aff-4668-9181-57552b31c1d5 a20cb11ad7c098959699005aba2a3e48 hg19 Primary Tumor C3N-02302-02 C3N-02302.WXS.T.hg38 C3N-02302 UCEC WXS tumor CPT0181610006 98562991-cf38-4173-90dd-518f188a593c_wxs_gdc_realn.bam 41216687611 BAM NA 62490e1e-a3cf-4ab2-950a-feb37dca2428 d0fe6d15f72b5f1145a8ee172ce2ab99 hg38 Primary Tumor C3N-02302-02 +C3N-02324.miRNA-Seq.A C3N-02324 CM miRNA-Seq tissue_normal CPT0135050009 221111_UNC51-VH00562_151_AAATWY5HV_ATGAGC_S7_L001_R1_001.unaln.bam 445034997 BAM NA e2a3406d-34a5-4e73-baff-bb056f4460e1 30934103015e2b26fa07b48943e3cbb3 NA Solid Tissue Normal C3N-02324-06 +C3N-02324.miRNA-Seq.T C3N-02324 CM miRNA-Seq tumor CPT0135040006 221111_UNC51-VH00562_151_AAATWY5HV_GTGAAA_S36_L001_R1_001.unaln.bam 451311981 BAM NA 8172e7ad-f940-41d3-b33f-d3457528467e 4c2a15ddcf3fbe11874faab4ce4fa15c NA Primary Tumor C3N-02324-03 +C3N-02327.miRNA-Seq.A C3N-02327 CM miRNA-Seq tissue_normal CPT0135410016 221118_UNC51-VH00562_156_AAAV2MKHV_CATGGC_S15_L001_R1_001.unaln.bam 340974809 BAM NA 5466a6dc-bdbb-4586-8170-08e9b8c96802 1bca6ffd59fa1269f9ac4168475b4be2 NA Solid Tissue Normal C3N-02327-06 +C3N-02327.miRNA-Seq.T C3N-02327 CM miRNA-Seq tumor CPT0135380006 221111_UNC51-VH00562_151_AAATWY5HV_GTGGCC_S37_L001_R1_001.unaln.bam 390417751 BAM NA e4391e43-b561-42bd-8721-b3a38031bcec 646eadc4bec82df31dc80dc9bf934ebf NA Primary Tumor C3N-02327-01 +C3N-02330.miRNA-Seq.A C3N-02330 CM miRNA-Seq tissue_normal CPT0135590016 221118_UNC51-VH00562_156_AAAV2MKHV_CATTTT_S16_L001_R1_001.unaln.bam 441454101 BAM NA 6deffb73-5a8f-4923-80a3-fb868bcdf89e 3c1d42753a791456e008333cc109efeb NA Solid Tissue Normal C3N-02330-06 +C3N-02330.miRNA-Seq.T C3N-02330 CM miRNA-Seq tumor CPT0135580006 221111_UNC51-VH00562_151_AAATWY5HV_GTTTCG_S38_L001_R1_001.unaln.bam 277157432 BAM NA afd33ab0-fd5d-4889-ba64-aeba0e4b1d3d 06c90050cfefb680deae9aaab185d23a NA Primary Tumor C3N-02330-03 C3N-02332.MethArray.Green.A C3N-02332 CCRCC Methylation Array tissue_normal CPT0135770006 204930640023_R03C01_Grn.idat 13677885 IDAT Green 8683a2cb-5458-4355-b3a6-9541822cd013 afd757abd708c0c757c23275f33ae2bc NA Solid Tissue Normal C3N-02332-06 C3N-02332.MethArray.Green.T C3N-02332 CCRCC Methylation Array tumor CPT0135740009 203219650165_R08C01_Grn.idat 13676221 IDAT Green b382c73b-0730-487f-a4a4-a7fa3408b500 3f15bad7889a38997304e00c96e8d0cc NA Primary Tumor C3N-02332-01 C3N-02332.MethArray.Red.A C3N-02332 CCRCC Methylation Array tissue_normal CPT0135770006 204930640023_R03C01_Red.idat 13677885 IDAT Red 8d6cab79-1f79-4ed1-9a0f-f67903b32276 a0ec64a3c9b9f342090020f598bf74ca NA Solid Tissue Normal C3N-02332-06 @@ -32146,6 +32272,8 @@ C3N-02333.WXS.N C3N-02333 HNSCC WXS blood_normal CPT0176950002 CPT0176950002.Who C3N-02333.WXS.N.hg38 C3N-02333 HNSCC WXS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wxs_gdc_realn.bam 28521597659 BAM NA b27bdd4f-652e-4c26-9c10-92a9e51cedb9 fe29b1d82fb204b4961edcacff4616fc hg38 Blood Derived Normal C3N-02333-71 C3N-02333.WXS.T C3N-02333 HNSCC WXS tumor CPT0176770006 CPT0176770006.WholeExome.RP-1303.bam 18192271782 BAM NA a86dff36-1d9b-4fe0-a07e-da55f7064b7d 4437e8eae23bc19371662a004676aee6 hg19 Primary Tumor C3N-02333-02 C3N-02333.WXS.T.hg38 C3N-02333 HNSCC WXS tumor CPT0176770006 e319056e-8929-40c5-b74c-744c257ea260_wxs_gdc_realn.bam 25718151290 BAM NA 3671fdbb-5149-4803-b53d-2ae48e4c31a8 7926bca3f1d5c150a59f9f30bf111c35 hg38 Primary Tumor C3N-02333-02 +C3N-02335.miRNA-Seq.A C3N-02335 CM miRNA-Seq tissue_normal CPT0136120006 221111_UNC51-VH00562_151_AAATWY5HV_CACCGG_S12_L001_R1_001.unaln.bam 405999696 BAM NA 3e144e45-23de-4829-b652-4c14263c5d3c 0fc89d36933a5f3701ac77406fd50e32 NA Solid Tissue Normal C3N-02335-06 +C3N-02335.miRNA-Seq.T C3N-02335 CM miRNA-Seq tumor CPT0136100006 221111_UNC51-VH00562_151_AAATWY5HV_CCGTCC_S20_L001_R1_001.unaln.bam 419319724 BAM NA 33061e67-a24c-4a5c-9608-f4bb77972dba 2078ca656d119cddffdc727c2473221b NA Primary Tumor C3N-02335-02 C3N-02337.MethArray.Green.T C3N-02337 UCEC Methylation Array tumor CPT0136280006 203561620043_R04C01_Grn.idat 13676211 IDAT Green d07f723e-c79d-407a-baa6-44d99b672090 4903e1d30390e9d4f21f986d30024372 NA Primary Tumor C3N-02337-02 C3N-02337.MethArray.Red.T C3N-02337 UCEC Methylation Array tumor CPT0136280006 203561620043_R04C01_Red.idat 13676211 IDAT Red ef4bfbd6-9245-4616-845d-a2bf4a1bda0e 6c9f95502de0952023869dd3ffb02975 NA Primary Tumor C3N-02337-02 C3N-02337.miRNA-Seq.T C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L002_R1_001.unaln.bam 288135954 BAM NA fded1b9b-b12e-41ff-8a2f-598a443d5692 047ebd1a2429f0cf1a3706a5ec64d858 NA Primary Tumor C3N-02337-02 @@ -32237,6 +32365,7 @@ C3N-02372.WXS.N C3N-02372 UCEC WXS blood_normal CPT0137260002 CPT0137260002.Whol C3N-02372.WXS.N.hg38 C3N-02372 UCEC WXS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wxs_gdc_realn.bam 32772113930 BAM NA 4bcc4a59-d8f7-48ed-9e34-7fc5150895a4 95577e7b2931c44934780ecfcef611fd hg38 Blood Derived Normal C3N-02372-71 C3N-02372.WXS.T C3N-02372 UCEC WXS tumor CPT0137140011 CPT0137140011.WholeExome.RP-1303.bam 21927969322 BAM NA f515b7de-1bc2-457b-bfd6-9a433d078a17 af8b423249b864ceea0360d437a71b18 hg19 Primary Tumor C3N-02372-01 C3N-02372.WXS.T.hg38 C3N-02372 UCEC WXS tumor CPT0137140011 e3518070-0733-4f7e-b857-3bb3d89a8041_wxs_gdc_realn.bam 31108072202 BAM NA 8f994400-ef0d-491e-8f37-37240e866bde cff120c3f499ea1f65192a54475285ea hg38 Primary Tumor C3N-02372-01 +C3N-02373.miRNA-Seq.A C3N-02373 CM miRNA-Seq tissue_normal CPT0176610009 221111_UNC51-VH00562_151_AAATWY5HV_CCAACA_S19_L001_R1_001.unaln.bam 518282153 BAM NA a1467cc3-364f-4383-a7ca-79f0390fd12a 97f30785b0391ccde8e5478dbb3fb130 NA Solid Tissue Normal C3N-02373-06 C3N-02374.MethArray.Green.A C3N-02374 LSCC Methylation Array tissue_normal CPT0146400006 203219720176_R01C01_Grn.idat 13676246 IDAT Green 74df72cf-abd8-4efd-af13-d216704cccd1 fc90754005b9c1a9bd6ea0d7b02169ad NA Solid Tissue Normal C3N-02374-03 C3N-02374.MethArray.Green.T C3N-02374 LSCC Methylation Array tumor CPT0146380010 203219760081_R01C01_Grn.idat 13676221 IDAT Green 1bac1a43-122f-4377-8140-9f50f111d8b2 00d30d033aff718aeb22e4e59827a62f NA Primary Tumor C3N-02374-01,C3N-02374-02 C3N-02374.MethArray.Red.A C3N-02374 LSCC Methylation Array tissue_normal CPT0146400006 203219720176_R01C01_Red.idat 13676246 IDAT Red c7777fc9-ae90-45fc-8cea-1363ae2281d2 d03db61de8de70d652c557c9fb791362 NA Solid Tissue Normal C3N-02374-03 @@ -33364,6 +33493,7 @@ C3N-02632.WXS.N C3N-02632 UCEC WXS blood_normal CPT0182060002 CPT0182060002.Whol C3N-02632.WXS.N.hg38 C3N-02632 UCEC WXS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wxs_gdc_realn.bam 31765484234 BAM NA ad81e092-13f4-445d-bf08-b5d1854f9c0d 6a608100865be107abb298b18ee1fc8a hg38 Blood Derived Normal C3N-02632-31 C3N-02632.WXS.T C3N-02632 UCEC WXS tumor CPT0182020007 CPT0182020007.WholeExome.RP-1303.bam 22965123724 BAM NA f835131e-116e-40f9-93e8-1bfeadb98198 70f9b602b3d05c844d6580db23759791 hg19 Primary Tumor C3N-02632-05 C3N-02632.WXS.T.hg38 C3N-02632 UCEC WXS tumor CPT0182020007 3e771046-4538-4fee-a130-0f28d72c7980_wxs_gdc_realn.bam 32031498465 BAM NA 19beb918-4541-47e8-a6d6-00316f87a698 99290500ab0ae74a8b21329367dc7f54 hg38 Primary Tumor C3N-02632-05 +C3N-02633.miRNA-Seq.T C3N-02633 CM miRNA-Seq tumor CPT0182730009 221111_UNC51-VH00562_151_AAATWY5HV_CATTTT_S18_L001_R1_001.unaln.bam 508660789 BAM NA 4aeb096c-df41-484a-ac37-008044dc7ea7 3de9295809bc12abb072684f139d6198 NA Primary Tumor C3N-02633-02 C3N-02635.MethArray.Green.T C3N-02635 UCEC Methylation Array tumor CPT0182070007 203561620049_R06C01_Grn.idat 13676231 IDAT Green 9585049c-44a9-4b58-b111-f094ef70e6a9 0bd67aac22f5f612bff548f059e38431 NA Primary Tumor C3N-02635-01 C3N-02635.MethArray.Red.T C3N-02635 UCEC Methylation Array tumor CPT0182070007 203561620049_R06C01_Red.idat 13676231 IDAT Red 023ac084-13fd-400a-82fd-828a611cbd78 7eb27b987f2901526f7372523d47b5f2 NA Primary Tumor C3N-02635-01 C3N-02635.miRNA-Seq.T C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 209090682 BAM NA 10d4e0ce-d873-45ad-bee4-58e0759e6509 c354fee5285dcc87a45d91caaafd653c NA Primary Tumor C3N-02635-01 @@ -35177,8 +35307,8 @@ C3N-02996.WXS.T.BIOTEXT_1wGW0DG C3N-02996 PDA WXS tumor CPT0187820034 CPT0187820 C3N-02996.WXS.T.BIOTEXT_1wGW0DG.hg38 C3N-02996 PDA WXS tumor CPT0187820034 f33b3ac6-a22a-4e63-8480-429e1c2d27ba_wxs_gdc_realn.bam 31875468805 BAM NA b8fc5c89-2d65-40ab-a969-62db1d608896 fb77d5d8f6ec9910a07fe816d6fba9ed hg38 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_1wGW0DG Duplicate item: PDA BIOTEXT DNA C3N-02996.WXS.T.BIOTEXT_Z6zYAR8 C3N-02996 PDA WXS tumor CPT0187820033 CPT0187820033.WholeExome.RP-1303.bam 37486064868 BAM NA 1af7be40-3009-47b4-81e0-63e1b75075e5 183d3999101070ee576cff2b4a0f2c5e hg19 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_Z6zYAR8 Duplicate item: PDA BIOTEXT DNA C3N-02996.WXS.T.BIOTEXT_Z6zYAR8.hg38 C3N-02996 PDA WXS tumor CPT0187820033 6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM NA ed5bb7bd-bedf-4585-9849-16526aae512a b3ff7e7c8215f8c438647c99389abe15 hg38 Primary Tumor C3N-02996-02 sample_tag=BIOTEXT_Z6zYAR8 Duplicate item: PDA BIOTEXT DNA -C3N-02996.WXS.T.UNK_YEyWzRW C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM NA 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd hg19 Primary Tumor C3N-02996-02 sample_tag=UNK_YEyWzRW Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA -C3N-02996.WXS.T.UNK_YEyWzRW.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM NA 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 hg38 Primary Tumor C3N-02996-02 sample_tag=UNK_YEyWzRW Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA +C3N-02996.WXS.T.UNK_YEyWzRW C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM NA 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd hg19 Primary Tumor C3N-02996-02 sample_tag=UNK_YEyWzRW PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA +C3N-02996.WXS.T.UNK_YEyWzRW.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM NA 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 hg38 Primary Tumor C3N-02996-02 sample_tag=UNK_YEyWzRW PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA C3N-02997.MethArray.Green.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Grn.idat 13676221 IDAT Green 04eb4f3f-1ac9-49b7-beac-ebc4364957c2 e22f79cd5400d6dac6f0c00be930cb3b NA Primary Tumor C3N-02997-01 sample_tag=CORE_M8JZn2A local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3N-02997.MethArray.Red.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Red.idat 13676221 IDAT Red 4e98b347-eed9-4724-8824-d32228a344f2 58520673375a163f28fdf8461d115f8f NA Primary Tumor C3N-02997-01 sample_tag=CORE_M8JZn2A local_meta=.core Duplicate item: PDA Pilot - core-derived DNA C3N-02997.miRNA-Seq.T C3N-02997 PDA miRNA-Seq tumor CPT0187880020 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM NA 5fb3c51f-52b9-41eb-b307-2369ec7c2914 55bd82edcadd64481ceda6ba757420a6 NA Primary Tumor C3N-02997-01 @@ -35643,6 +35773,7 @@ C3N-03028.WXS.N C3N-03028 HNSCC WXS blood_normal CPT0226480002 CPT0226480002.Who C3N-03028.WXS.N.hg38 C3N-03028 HNSCC WXS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wxs_gdc_realn.bam 29858297542 BAM NA ef7578db-c8fe-41ce-be0c-25952fecf890 017e16bcb63b67f6ef56a2b102e615fd hg38 Blood Derived Normal C3N-03028-31 C3N-03028.WXS.T.hg38.high_cov C3N-03028 HNSCC WXS tumor CPT0226440006 f055a2f7-3889-4c7b-baf8-bada9b7989b4_wxs_gdc_realn.bam 54333068229 BAM NA 1a5979f7-587a-4af6-b6a4-c05e13b2b793 df5a3fbfd64d47dccdea5505501fd181 hg38 Primary Tumor C3N-03028-01 local_meta=.high_cov C3N-03028.WXS.T.high_cov C3N-03028 HNSCC WXS tumor CPT0226440006 CPT0226440006.WholeExome.RP-1303.bam 39315266074 BAM NA 80210fb0-2021-4dcd-9cd3-f5d78b5952cf 4a057bdea8fae811e3ded1217c30863b hg19 Primary Tumor C3N-03028-01 local_meta=.high_cov +C3N-03029.miRNA-Seq.T C3N-03029 CM miRNA-Seq tumor CPT0244570006 221117_UNC51-VH00562_155_AAAVL2YHV_CACGAT_S13_L001_R1_001.unaln.bam 332153653 BAM NA 0ade3c1e-9337-4639-bbe2-b2a850874b84 f1a8f4e66cfd8a53a59248c6802c8e1a NA Primary Tumor C3N-03029-01 C3N-03038.MethArray.Green.A C3N-03038 LUAD Methylation Array tissue_normal CPT0235100006 203561620162_R03C01_Grn.idat 13676226 IDAT Green 9b860841-fcda-48d9-ab10-4418d5d828d0 337efaa37776721885e958e635c7cf2f NA Solid Tissue Normal C3N-03038-03 C3N-03038.MethArray.Green.T C3N-03038 LUAD Methylation Array tumor CPT0235090006 203561450048_R02C01_Grn.idat 13676221 IDAT Green be5b28a4-6810-4452-a705-2629a6501127 cfe13fa4f88ec51fa16dc1ed58a6c8d7 NA Primary Tumor C3N-03038-02 C3N-03038.MethArray.Red.A C3N-03038 LUAD Methylation Array tissue_normal CPT0235100006 203561620162_R03C01_Red.idat 13676226 IDAT Red 9207ab98-3d85-40d1-b964-f14bf3f57086 280f80d7917d317a239ee48fb09b23be NA Solid Tissue Normal C3N-03038-03 @@ -36167,6 +36298,8 @@ C3N-03093.WXS.N C3N-03093 LSCC WXS blood_normal CPT0198000002 CPT0198000002.Whol C3N-03093.WXS.N.hg38 C3N-03093 LSCC WXS blood_normal CPT0198000002 b52dfbb4-71a1-40b5-8f03-56122d428afd_wxs_gdc_realn.bam 24048216533 BAM NA 5d1685ea-6990-4b65-8a0a-f612b53dd03e 65a6759081880d6fa53ab1cf9ce3acab hg38 Blood Derived Normal C3N-03093-71 C3N-03093.WXS.T C3N-03093 LSCC WXS tumor CPT0197740006 CPT0197740006.WholeExome.RP-1303.bam 23000567980 BAM NA bc711fbc-735b-4755-8c0b-a34595670c6f 3b0828382716ab90952be0763b92892b hg19 Primary Tumor C3N-03093-03 C3N-03093.WXS.T.hg38 C3N-03093 LSCC WXS tumor CPT0197740006 ad027991-1119-4114-bd08-47af71ae25e5_wxs_gdc_realn.bam 31249136420 BAM NA 6655cf18-88ae-46c7-94bc-2124ee4ce094 36c5e0fcc95ab5758c67284cf10d8285 hg38 Primary Tumor C3N-03093-03 +C3N-03097.miRNA-Seq.A C3N-03097 CM miRNA-Seq tissue_normal CPT0199090012 221117_UNC51-VH00562_155_AAAVL2YHV_GAGTGG_S29_L001_R1_001.unaln.bam 413162272 BAM NA 9d789a81-3630-47bf-a8fd-d8e714f852af 3a9b255b0be982a1a3ff5ce96b7e4925 NA Solid Tissue Normal C3N-03097-06 +C3N-03097.miRNA-Seq.T C3N-03097 CM miRNA-Seq tumor CPT0199050013 221111_UNC51-VH00562_151_AAATWY5HV_TCGGCA_S46_L001_R1_001.unaln.bam 358259243 BAM NA 6ed02eb9-9a19-424a-b854-f0e952502755 b768a3b59507e1dc8ab5d2d5a1a4997f NA Primary Tumor C3N-03097-02 C3N-03173.MethArray.Green.A C3N-03173 PDA Methylation Array tissue_normal CPT0186050007 203561450102_R07C01_Grn.idat 13676236 IDAT Green 35510f79-e226-409c-9b6c-fca0acdfc77b dd0429819d8954139f706fab3fe40564 NA Solid Tissue Normal C3N-03173-06 C3N-03173.MethArray.Green.T C3N-03173 PDA Methylation Array tumor CPT0186040013 203561450014_R01C01_Grn.idat 13676217 IDAT Green 26107843-0e59-4a39-a10d-a2b48c6368a1 0d5d47e9afe2950b7ec6cd0487a1200d NA Primary Tumor C3N-03173-01 C3N-03173.MethArray.Red.A C3N-03173 PDA Methylation Array tissue_normal CPT0186050007 203561450102_R07C01_Red.idat 13676236 IDAT Red bca9c0cf-d5fc-411c-bdea-058785578fc5 8d8706e304e92d21df9249d8ddbc31b2 NA Solid Tissue Normal C3N-03173-06 @@ -36482,6 +36615,8 @@ C3N-03212.WXS.N C3N-03212 LUAD WXS blood_normal CPT0185290002 CPT0185290002.Whol C3N-03212.WXS.N.hg38 C3N-03212 LUAD WXS blood_normal CPT0185290002 345b1b1e-842a-450c-9ba5-330000607de5_wxs_gdc_realn.bam 33789158956 BAM NA fa381013-5ff5-432a-b485-f3b98073ff91 7e830898ca81a895f2db6a8650b28c28 hg38 Blood Derived Normal C3N-03212-31 C3N-03212.WXS.T C3N-03212 LUAD WXS tumor CPT0185230006 CPT0185230006.WholeExome.RP-1303.bam 23296727217 BAM NA 5d02d4c8-fec0-4171-992d-baea6ae91e2f cbbd76f84da165c7842c8b6c523d1fbc hg19 Primary Tumor C3N-03212-01 C3N-03212.WXS.T.hg38 C3N-03212 LUAD WXS tumor CPT0185230006 68e8f36d-9fed-40d3-9f22-aa5be283c459_wxs_gdc_realn.bam 32388803944 BAM NA 0580be19-2fd3-49ab-83c0-38ff4c8ac752 80dd2b30aefb29cf9d85cbc0e2bc7cd4 hg38 Primary Tumor C3N-03212-01 +C3N-03220.miRNA-Seq.A C3N-03220 CM miRNA-Seq tissue_normal CPT0191040005 221117_UNC51-VH00562_155_AAAVL2YHV_ACAGTG_S1_L001_R1_001.unaln.bam 471781304 BAM NA 7167c752-5196-4117-837a-870c7a302924 3ad06b2051582f4d435fb0db39139e30 NA Solid Tissue Normal C3N-03220-06 +C3N-03220.miRNA-Seq.T C3N-03220 CM miRNA-Seq tumor CPT0191020018 221117_UNC51-VH00562_155_AAAVL2YHV_CTTGTA_S27_L001_R1_001.unaln.bam 165917614 BAM NA 4ea30208-1f4e-478f-a3f6-bebf7d0c279c 069bd1d62913156c98e141e71923f373 NA Primary Tumor C3N-03220-02,C3N-03220-03 C3N-03222.MethArray.Green.A C3N-03222 LUAD Methylation Array tissue_normal CPT0179170005 203219640158_R06C01_Grn.idat 13676216 IDAT Green e159bb9b-82fd-4aef-919a-decd1307b486 b38ccf51e72c611dcce2bc36543085c7 NA Solid Tissue Normal C3N-03222-06 C3N-03222.MethArray.Green.T C3N-03222 LUAD Methylation Array tumor CPT0179140006 203219640158_R08C01_Grn.idat 13676216 IDAT Green b14f313f-af22-41ca-860a-5a3e1067e602 a7e90dbde17da2cea67af41887330a1b NA Primary Tumor C3N-03222-01 C3N-03222.MethArray.Red.A C3N-03222 LUAD Methylation Array tissue_normal CPT0179170005 203219640158_R06C01_Red.idat 13676216 IDAT Red e5974f4a-fe28-44ed-9974-c3c1d5a3e21a cfdf661039dc39276e0ef0593130ff0e NA Solid Tissue Normal C3N-03222-06 @@ -36510,6 +36645,8 @@ C3N-03222.WXS.N C3N-03222 LUAD WXS blood_normal CPT0179260002 CPT0179260002.Whol C3N-03222.WXS.N.hg38 C3N-03222 LUAD WXS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wxs_gdc_realn.bam 26466676969 BAM NA 8aeaf54e-abc6-4689-9cb7-0858bbbd8436 902619168518d33becfc907f8688a2d0 hg38 Blood Derived Normal C3N-03222-71 C3N-03222.WXS.T C3N-03222 LUAD WXS tumor CPT0179140006 CPT0179140006.WholeExome.RP-1303.bam 20396682125 BAM NA f5a0c84a-3d44-492c-aefd-137070ffc5e1 c2da9093c6320904e3af77dc66bda4d9 hg19 Primary Tumor C3N-03222-01 C3N-03222.WXS.T.hg38 C3N-03222 LUAD WXS tumor CPT0179140006 5af6b5ce-93f8-4a2a-8b20-1509cf2e82a7_wxs_gdc_realn.bam 29004977899 BAM NA 3a8ccbe9-b074-413b-bea9-14bef415088a 0a20a8688984027d6e44458bec941e3c hg38 Primary Tumor C3N-03222-01 +C3N-03223.miRNA-Seq.A C3N-03223 CM miRNA-Seq tissue_normal CPT0191420006 221117_UNC51-VH00562_155_AAAVL2YHV_CGATGT_S21_L001_R1_001.unaln.bam 522955227 BAM NA 00904a62-b6fd-467c-9e70-f9c8347e9b64 ec7cd4b9c8c58de9530ebf340481ee9a NA Solid Tissue Normal C3N-03223-06 +C3N-03223.miRNA-Seq.T C3N-03223 CM miRNA-Seq tumor CPT0191400013 221111_UNC51-VH00562_151_AAATWY5HV_TCATTC_S43_L001_R1_001.unaln.bam 197573493 BAM NA 45a78e81-65d5-43c8-b394-d3ede8631b73 89ae6be526d3fab08d9e9c18ab8842d0 NA Primary Tumor C3N-03223-02 C3N-03225.MethArray.Green.A C3N-03225 LUAD Methylation Array tissue_normal CPT0191600006 203561450073_R04C01_Grn.idat 13676221 IDAT Green a4580af6-d4d7-49f8-bdaf-81f7a7d05b18 f23dcd7cd679aa59f6fcd19b6a332f29 NA Solid Tissue Normal C3N-03225-06 C3N-03225.MethArray.Green.T C3N-03225 LUAD Methylation Array tumor CPT0191570006 203561620095_R05C01_Grn.idat 13676216 IDAT Green 0373bffb-bda0-491e-bc67-cb21e33ee0b2 a0fd2eb9ba90259aeb9c9ec5a2b99d1f NA Primary Tumor C3N-03225-01 C3N-03225.MethArray.Red.A C3N-03225 LUAD Methylation Array tissue_normal CPT0191600006 203561450073_R04C01_Red.idat 13676221 IDAT Red 8396c34e-d760-4b76-a76a-b19534f39015 bd8142a8800cbc36a4d742e1632678ca NA Solid Tissue Normal C3N-03225-06 @@ -36569,6 +36706,9 @@ C3N-03226.WXS.N C3N-03226 HNSCC WXS blood_normal CPT0194530002 CPT0194530002.Who C3N-03226.WXS.N.hg38 C3N-03226 HNSCC WXS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wxs_gdc_realn.bam 34429694025 BAM NA 3c8cb21b-c84b-48da-b870-d4b941b0b530 764a81784415237014e48a0e0cfcd498 hg38 Blood Derived Normal C3N-03226-71 C3N-03226.WXS.T C3N-03226 HNSCC WXS tumor CPT0194420009 CPT0194420009.WholeExome.RP-1303.bam 23112506510 BAM NA 5f61df23-b135-4421-a013-b86cc5ba0b1a 5ead4a9e7af1dc2c71d8bbbdd9677699 hg19 Primary Tumor C3N-03226-02 C3N-03226.WXS.T.hg38 C3N-03226 HNSCC WXS tumor CPT0194420009 7664042d-ae27-4d60-9731-0c5cd47b6cce_wxs_gdc_realn.bam 31628258860 BAM NA 60017027-d9c3-4ef5-b9c2-199b29dacd42 684287a25d96769c078192b43b1765c3 hg38 Primary Tumor C3N-03226-02 +C3N-03228.miRNA-Seq.A C3N-03228 CM miRNA-Seq tissue_normal CPT0180080015 221111_UNC51-VH00562_151_AAATWY5HV_CTATAC_S25_L001_R1_001.unaln.bam 385653507 BAM NA eb3fd0b5-0dfc-4e8a-a1cc-b2b3d855eaca b2914ed0b255e69e7758739c0eb56a67 NA Solid Tissue Normal C3N-03228-06 +C3N-03228.miRNA-Seq.T C3N-03228 CM miRNA-Seq tumor CPT0180070009 221111_UNC51-VH00562_151_AAATWY5HV_CGTACG_S23_L001_R1_001.unaln.bam 296246407 BAM NA 58c37261-213c-4897-8c36-83072017ef75 1de1f539b64fdc0086a5de8d559edd5e NA Primary Tumor C3N-03228-03 +C3N-03229.miRNA-Seq.T C3N-03229 CM miRNA-Seq tumor CPT0180240009 221111_UNC51-VH00562_151_AAATWY5HV_GAGTGG_S29_L001_R1_001.unaln.bam 374283433 BAM NA 963a40f5-197d-4eb1-9a07-0e91d2480d3e 3d5a74285d86e3b577c57fe66d0328eb NA Primary Tumor C3N-03229-02 C3N-03233.MethArray.Green.A C3N-03233 LUAD Methylation Array tissue_normal CPT0180740006 203219670118_R06C01_Grn.idat 13676216 IDAT Green 9463f036-71cc-4aa2-8614-e122f0f75fee 40cccf21a5f323a8399060c4074c3b72 NA Solid Tissue Normal C3N-03233-06 C3N-03233.MethArray.Green.T C3N-03233 LUAD Methylation Array tumor CPT0180730006 203220070156_R08C01_Grn.idat 13676216 IDAT Green 3928f56b-ca25-4240-aaf7-6a28e3ab0c84 68179f5807a6f8fa5aeb4cf468e93fb3 NA Primary Tumor C3N-03233-03 C3N-03233.MethArray.Red.A C3N-03233 LUAD Methylation Array tissue_normal CPT0180740006 203219670118_R06C01_Red.idat 13676216 IDAT Red db4c1c5c-c72a-46da-a44b-493d88b341ca d8c3ae1a0a89b2ea8a80ea7dfdbd1345 NA Solid Tissue Normal C3N-03233-06 @@ -36597,6 +36737,10 @@ C3N-03233.WXS.N C3N-03233 LUAD WXS blood_normal CPT0180830002 CPT0180830002.Whol C3N-03233.WXS.N.hg38 C3N-03233 LUAD WXS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wxs_gdc_realn.bam 29874282977 BAM NA 735636d7-7006-433a-b81d-203f334f2f80 a6ed7480ef78ca308fbd552cbb50577e hg38 Blood Derived Normal C3N-03233-71 C3N-03233.WXS.T C3N-03233 LUAD WXS tumor CPT0180730006 CPT0180730006.WholeExome.RP-1303.bam 24112184013 BAM NA 6a7062bb-1fe7-49f5-ba51-3e2f6a37804b 0690ad3a8edeeabb0ee031a62eb46958 hg19 Primary Tumor C3N-03233-03 C3N-03233.WXS.T.hg38 C3N-03233 LUAD WXS tumor CPT0180730006 c700325c-8aba-42cf-b647-18fa1c6f878c_wxs_gdc_realn.bam 32755281805 BAM NA 4b7d019f-7160-4856-8608-41bd5e46b5fc d87ffb1e702e6ef2ca9859b2836c761d hg38 Primary Tumor C3N-03233-03 +C3N-03234.miRNA-Seq.A C3N-03234 CM miRNA-Seq tissue_normal CPT0180920013 221118_UNC51-VH00562_156_AAAV2MKHV_CCAACA_S17_L001_R1_001.unaln.bam 325791128 BAM NA a74f8076-6c1b-4a5b-92c1-2b074fb5956f 3f48468a3eb62da1276a2aacc6b8fd0b NA Solid Tissue Normal C3N-03234-06 +C3N-03234.miRNA-Seq.T C3N-03234 CM miRNA-Seq tumor CPT0180900009 221111_UNC51-VH00562_151_AAATWY5HV_GGTAGC_S33_L001_R1_001.unaln.bam 308118974 BAM NA b9750280-d8e4-4af4-8101-731bc563f72c 4a92acb7eaf705fc5da772810478daec NA Primary Tumor C3N-03234-02 +C3N-03235.miRNA-Seq.A C3N-03235 CM miRNA-Seq tissue_normal CPT0181100015 221111_UNC51-VH00562_151_AAATWY5HV_CTAGCT_S24_L001_R1_001.unaln.bam 460438244 BAM NA 89a4af70-2b14-4d5d-97f5-1eb92737eb25 6a4a22d2a0df99ab9bee7fcda091d8bf NA Solid Tissue Normal C3N-03235-06 +C3N-03235.miRNA-Seq.T C3N-03235 CM miRNA-Seq tumor CPT0181090009 221111_UNC51-VH00562_151_AAATWY5HV_TCGAAG_S45_L001_R1_001.unaln.bam 393983228 BAM NA a24a6064-e65f-4443-80d5-58faa2668741 4fe73a4c68f8d42909a7bab997cd0dcc NA Primary Tumor C3N-03235-03 C3N-03238.MethArray.Green.A C3N-03238 LUAD Methylation Array tissue_normal CPT0193900006 203219650127_R06C01_Grn.idat 13676216 IDAT Green 70a42f4f-5974-46ac-93ac-08ebd3ae2632 571d74a23b189af5d70a2111209c4c3b NA Solid Tissue Normal C3N-03238-06 C3N-03238.MethArray.Green.T C3N-03238 LUAD Methylation Array tumor CPT0193870006 203219650176_R07C01_Grn.idat 13676221 IDAT Green 3746b636-3eb6-4782-9294-333dbf50635c 949104468114aa9b69f92546ee43547a NA Primary Tumor C3N-03238-01 C3N-03238.MethArray.Red.A C3N-03238 LUAD Methylation Array tissue_normal CPT0193900006 203219650127_R06C01_Red.idat 13676216 IDAT Red 63d2fe67-2bd9-4b53-9638-904cfba17f53 6cc9eef137071db9a13848e6c5dd514f NA Solid Tissue Normal C3N-03238-06 @@ -36625,6 +36769,8 @@ C3N-03238.WXS.N C3N-03238 LUAD WXS blood_normal CPT0193990002 CPT0193990002.Whol C3N-03238.WXS.N.hg38 C3N-03238 LUAD WXS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wxs_gdc_realn.bam 26469353781 BAM NA fd74d144-b936-4a19-a6a9-1af6ca61581c 45603cd8cc26d0e711708f34921bc57e hg38 Blood Derived Normal C3N-03238-71 C3N-03238.WXS.T C3N-03238 LUAD WXS tumor CPT0193870006 CPT0193870006.WholeExome.RP-1303.bam 24392518025 BAM NA 95944a7f-efe5-42bb-b776-efd4b7ca575a 1de5d81a37d4844a89f81167d9b4b9f4 hg19 Primary Tumor C3N-03238-01 C3N-03238.WXS.T.hg38 C3N-03238 LUAD WXS tumor CPT0193870006 e8b4516b-888d-454a-b8c3-b13296ae60ed_wxs_gdc_realn.bam 33384403381 BAM NA 7767472c-1d11-470f-be44-aa4f7b476daa 72c5b18d7587b30dc55b79220d9fe728 hg38 Primary Tumor C3N-03238-01 +C3N-03239.miRNA-Seq.A C3N-03239 CM miRNA-Seq tissue_normal CPT0194080006 221117_UNC51-VH00562_155_AAAVL2YHV_TTAGGC_S48_L001_R1_001.unaln.bam 367466463 BAM NA b79f9309-d501-4562-a54b-157ad141df54 6f8cf1eb891946b8afdd749eae5f69f2 NA Solid Tissue Normal C3N-03239-06 +C3N-03239.miRNA-Seq.T C3N-03239 CM miRNA-Seq tumor CPT0194050014 221111_UNC51-VH00562_151_AAATWY5HV_TAATCG_S39_L001_R1_001.unaln.bam 464485167 BAM NA a5c3065f-8660-4364-8381-fdaeeecfb9ff e3df7eda80d465d5678fd14765fa6e56 NA Primary Tumor C3N-03239-01,C3N-03239-03 C3N-03415.MethArray.Green.T C3N-03415 UCEC Methylation Array tumor CPT0247910006 203561620091_R06C01_Grn.idat 13676211 IDAT Green cedbce9a-15c3-41f1-bc3f-97872fc2a4d0 2799d921c8d601c93388e5a61da3896a NA Primary Tumor C3N-03415-01 C3N-03415.MethArray.Red.T C3N-03415 UCEC Methylation Array tumor CPT0247910006 203561620091_R06C01_Red.idat 13676211 IDAT Red 0d4d1d08-1478-4d72-8ef9-7b85805c8521 6f07a1cadff8616bc089922f67cc1544 NA Primary Tumor C3N-03415-01 C3N-03415.miRNA-Seq.T C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L001_R1_001.unaln.bam 200579286 BAM NA 5f4b4196-dd3c-4529-8489-3eec2b246fba b66b7c7986a86e08f39778cef7594285 NA Primary Tumor C3N-03415-01 @@ -37059,6 +37205,8 @@ C3N-03458.WXS.N C3N-03458 HNSCC WXS blood_normal CPT0246710002 CPT0246710002.Who C3N-03458.WXS.N.hg38 C3N-03458 HNSCC WXS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wxs_gdc_realn.bam 32044180290 BAM NA 020efae6-7be3-43a3-9e6a-2b51324b1098 36853b50904c9da275cb23a5a88ec2f6 hg38 Blood Derived Normal C3N-03458-31 C3N-03458.WXS.T C3N-03458 HNSCC WXS tumor CPT0246670006 CPT0246670006.WholeExome.RP-1303.bam 25574510496 BAM NA f62766ec-5d2c-4b87-8c0c-d992490468b8 749ceb07d8fc3ea49f112b4d8d54f5cc hg19 Primary Tumor C3N-03458-01 C3N-03458.WXS.T.hg38 C3N-03458 HNSCC WXS tumor CPT0246670006 65378d04-9290-4314-80ef-7fa63d18b0dc_wxs_gdc_realn.bam 35724000491 BAM NA baad83c2-5991-4892-8503-d1b8a2f142eb 18a06aaff7e587bb4549de9d66cebcaf hg38 Primary Tumor C3N-03458-01 +C3N-03460.miRNA-Seq.A C3N-03460 CM miRNA-Seq tissue_normal CPT0218820011 221117_UNC51-VH00562_155_AAAVL2YHV_ATTCCT_S9_L001_R1_001.unaln.bam 368939719 BAM NA 81f14ff7-5768-4c73-84a5-4ffba4a5d8d1 06f2a78ccce3481912663d313aa75afc NA Solid Tissue Normal C3N-03460-06 +C3N-03460.miRNA-Seq.T C3N-03460 CM miRNA-Seq tumor CPT0218760010 221117_UNC51-VH00562_155_AAAVL2YHV_AGTCAA_S4_L001_R1_001.unaln.bam 208200009 BAM NA 4415d377-a417-40be-a4d9-ca9c58fdf184 bde594858179830fa7c98a0dd0c1b7be NA Primary Tumor C3N-03460-02,C3N-03460-03 C3N-03473.MethArray.Green.T C3N-03473 GBM Methylation Array tumor CPT0207090009 203220070156_R03C01_Grn.idat 13676216 IDAT Green e9e45a65-cf58-4c9a-9c52-6fa08957ae05 a174b16122b6a709de828e15d6364017 NA Primary Tumor C3N-03473-01 C3N-03473.MethArray.Red.T C3N-03473 GBM Methylation Array tumor CPT0207090009 203220070156_R03C01_Red.idat 13676216 IDAT Red 050debbd-3a69-4934-b17e-287ec39afaec 7a9ccd9666e8873603c2f4044ce85176 NA Primary Tumor C3N-03473-01 C3N-03473.miRNA-Seq.T C3N-03473 GBM miRNA-Seq tumor CPT0207090013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L008_R1_001.unaln.bam 291905505 BAM NA 862a751e-660a-4e52-b883-a75db29c282f 6fe2e09f4ed3613360ee0aba814a0593 NA Primary Tumor C3N-03473-01 @@ -37270,6 +37418,10 @@ C3N-03612.WXS.N C3N-03612 HNSCC WXS blood_normal CPT0194890002 CPT0194890002.Who C3N-03612.WXS.N.hg38 C3N-03612 HNSCC WXS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wxs_gdc_realn.bam 64533653781 BAM NA 9fee90a3-69c8-4cb5-a684-36a0d45f8f68 b7d298a0d4b8ffdb6f963e11c18bde25 hg38 Blood Derived Normal C3N-03612-71 C3N-03612.WXS.T C3N-03612 HNSCC WXS tumor CPT0194790009 CPT0194790009.WholeExome.RP-1303.bam 27425976946 BAM NA a91c1718-e597-4f89-a449-ec22bfd0ca6c f8a25debbf95b6a1e352e93e4477465a hg19 Primary Tumor C3N-03612-03 C3N-03612.WXS.T.hg38 C3N-03612 HNSCC WXS tumor CPT0194790009 a52558dd-88b4-4bda-8c25-d3b87bde4163_wxs_gdc_realn.bam 37564844679 BAM NA 7af29814-e9b2-4176-a781-1bbbf56c249a 9c3dfe2140a530a7af458bce9a469cdb hg38 Primary Tumor C3N-03612-03 +C3N-03614.miRNA-Seq.A C3N-03614 CM miRNA-Seq tissue_normal CPT0194620006 221117_UNC51-VH00562_155_AAAVL2YHV_TGACCA_S47_L001_R1_001.unaln.bam 513920011 BAM NA 9944207d-db5e-49a4-9c5a-a248d96f287a 0d3c0b61f111e9cd4bd0be95547286f4 NA Solid Tissue Normal C3N-03614-06 +C3N-03614.miRNA-Seq.T C3N-03614 CM miRNA-Seq tumor CPT0194590014 221111_UNC51-VH00562_151_AAATWY5HV_TACAGC_S40_L001_R1_001.unaln.bam 353850068 BAM NA a4522502-eb7f-46c2-adbd-011d28a5bc5a d8edaf62dd4d00157c28eaafb393d85b NA Primary Tumor C3N-03614-01,C3N-03614-02 +C3N-03617.miRNA-Seq.A C3N-03617 CM miRNA-Seq tissue_normal CPT0195340005 221117_UNC51-VH00562_155_AAAVL2YHV_GCCAAT_S31_L001_R1_001.unaln.bam 431827328 BAM NA 5d47bbb0-745c-4478-b09a-a5b7e2f3f2fb d7a1f78b89c19af7fee85c69501e889f NA Solid Tissue Normal C3N-03617-06 +C3N-03617.miRNA-Seq.T C3N-03617 CM miRNA-Seq tumor CPT0195330009 221117_UNC51-VH00562_155_AAAVL2YHV_GGCTAC_S32_L001_R1_001.unaln.bam 401030997 BAM NA d83dc696-c7d6-4532-b1eb-b2e79c6f450e d860bb5cbe3af5e9410ae4d29eb1187e NA Primary Tumor C3N-03617-03 C3N-03619.MethArray.Green.A C3N-03619 HNSCC Methylation Array tissue_normal CPT0195880008 203271750010_R03C01_Grn.idat 13676206 IDAT Green 10f23dd1-36da-4afe-9b60-fd109e160a25 9b6ae0602c5bb55b0f80ae0dd4dc3255 NA Solid Tissue Normal C3N-03619-06 C3N-03619.MethArray.Green.T C3N-03619 HNSCC Methylation Array tumor CPT0195860009 203271750010_R08C01_Grn.idat 13676206 IDAT Green faf62f22-f60d-45a1-a273-ecf225d11803 289045b69609f4d3c441d92bff997674 NA Primary Tumor C3N-03619-02 C3N-03619.MethArray.Red.A C3N-03619 HNSCC Methylation Array tissue_normal CPT0195880008 203271750010_R03C01_Red.idat 13676206 IDAT Red e806a090-fd48-4f3f-be80-df9e8705332b 4941b4ab4edc832ffc75a9b723521667 NA Solid Tissue Normal C3N-03619-06 @@ -38398,6 +38550,12 @@ C3N-03911.WXS.N C3N-03911 LUAD WXS blood_normal CPT0223730002 CPT0223730002.Whol C3N-03911.WXS.N.hg38 C3N-03911 LUAD WXS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wxs_gdc_realn.bam 38178162479 BAM NA 9c23156c-40b6-490b-a21f-6af4d6646f89 9a6598f1f87515692ddbeb2c8b7c819f hg38 Blood Derived Normal C3N-03911-71 C3N-03911.WXS.T C3N-03911 LUAD WXS tumor CPT0223610006 CPT0223610006.WholeExome.RP-1303.bam 30791088843 BAM NA 66ce1f69-24e8-4ea9-90f0-7bcbbe426d3f 299ec3d5326f917b29d1bb238bb7cd38 hg19 Primary Tumor C3N-03911-01 C3N-03911.WXS.T.hg38 C3N-03911 LUAD WXS tumor CPT0223610006 cded8a7e-8a15-41a0-adbc-3816ad38d1a6_wxs_gdc_realn.bam 41580983977 BAM NA d591f52c-a038-45c5-967a-d21e5e0512b0 87bdc8c20a50d18abc520876d12857ca hg38 Primary Tumor C3N-03911-01 +C3N-03913.miRNA-Seq.A C3N-03913 CM miRNA-Seq tissue_normal CPT0222920010 221117_UNC51-VH00562_155_AAAVL2YHV_GTAGAG_S34_L001_R1_001.unaln.bam 419168774 BAM NA 7181f669-8339-4c9f-9093-e9654836ec0c ec210a2ee5804f4dc4cf214367f65da4 NA Solid Tissue Normal C3N-03913-06 +C3N-03913.miRNA-Seq.T C3N-03913 CM miRNA-Seq tumor CPT0222900009 221117_UNC51-VH00562_155_AAAVL2YHV_GATCAG_S30_L001_R1_001.unaln.bam 415971130 BAM NA c5b475b2-63b2-4ef0-b3a0-b7fa9acbd4e4 c85c95a65a4628b1c08d0450234d190b NA Primary Tumor C3N-03913-02 +C3N-03916.miRNA-Seq.A C3N-03916 CM miRNA-Seq tissue_normal CPT0222560009 221117_UNC51-VH00562_155_AAAVL2YHV_ATGTCA_S8_L001_R1_001.unaln.bam 357334342 BAM NA 2751adec-3c4a-4f6b-a20e-0d28e6710095 6b3c0069d0c78dbb300743d967eebfb5 NA Solid Tissue Normal C3N-03916-06 +C3N-03916.miRNA-Seq.T C3N-03916 CM miRNA-Seq tumor CPT0222550009 221117_UNC51-VH00562_155_AAAVL2YHV_ACTTGA_S3_L001_R1_001.unaln.bam 332127959 BAM NA 6375290a-3162-49ba-9f8d-2a089725d0f1 12951e6be07ab443cf05dc55f89db7fe NA Primary Tumor C3N-03916-03 +C3N-03918.miRNA-Seq.A C3N-03918 CM miRNA-Seq tissue_normal CPT0248720014 221118_UNC51-VH00562_156_AAAV2MKHV_CTAGCT_S22_L001_R1_001.unaln.bam 526513412 BAM NA 25fa7fad-d705-4979-8e36-06433ef5ed73 8a24e18f5c5b1bcf3dd663178dba7664 NA Solid Tissue Normal C3N-03918-06 +C3N-03918.miRNA-Seq.T C3N-03918 CM miRNA-Seq tumor CPT0248690009 221117_UNC51-VH00562_155_AAAVL2YHV_TCGAAG_S45_L001_R1_001.unaln.bam 418695580 BAM NA 5c9f830b-669b-43d1-a2d6-a6a993c7f503 00d7c277fdd3e4c02ef269a77e21058a NA Primary Tumor C3N-03918-01 C3N-03921.MethArray.Green.A C3N-03921 LUAD Methylation Array tissue_normal CPT0223280006 203561620064_R02C01_Grn.idat 13676211 IDAT Green 6b081f18-298b-43b8-9742-bf971330da06 0278a1ec04760958ff43bd97c49f016a NA Solid Tissue Normal C3N-03921-06 C3N-03921.MethArray.Green.T C3N-03921 LUAD Methylation Array tumor CPT0223260006 203561450018_R03C01_Grn.idat 13676216 IDAT Green c094bec8-9c06-44df-8826-d7051b8185b2 1f681b80b8821e8c29ced8d308184d51 NA Primary Tumor C3N-03921-02 C3N-03921.MethArray.Red.A C3N-03921 LUAD Methylation Array tissue_normal CPT0223280006 203561620064_R02C01_Red.idat 13676211 IDAT Red ab1fc338-7329-4011-a469-f565c66b2204 9edae40fc67947a9797bcfc02af676cb NA Solid Tissue Normal C3N-03921-06 @@ -38844,6 +39002,8 @@ C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.Whol C3N-04138.WXS.N.hg38 C3N-04138 LSCC WXS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wxs_gdc_realn.bam 40369608923 BAM NA fb6ee426-38fc-461a-b08f-dc6ba3fc6d53 a54f7f11a203362d83a50770cd69383c hg38 Blood Derived Normal C3N-04138-31 C3N-04138.WXS.T C3N-04138 LSCC WXS tumor CPT0331000007 CPT0331000007.WholeExome.RP-1303.bam 19694203636 BAM NA 4d3904df-d98f-425b-902d-1d83fd6e3a1b 2083839e8ab1cbcbaa3b0c49bf5f9b9b hg19 Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.WXS.T.hg38 C3N-04138 LSCC WXS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wxs_gdc_realn.bam 27641153087 BAM NA 4cc82681-a96f-4cf5-88fb-17fe9301efc5 6f299b925e22a8609014f10e83f0319a hg38 Primary Tumor C3N-04138-01,C3N-04138-02 +C3N-04142.miRNA-Seq.A C3N-04142 CM miRNA-Seq tissue_normal CPT0259190006 221109_UNC51-VH00562_149_AAAV5CLHV_GGTAGC_S33_L001_R1_001.unaln.bam 347818014 BAM NA 6ed0581b-0e53-48a3-889c-9fd701cb2f84 b0acf57e2b42754fe23d3627bbe9ec55 NA Solid Tissue Normal C3N-04142-06 +C3N-04142.miRNA-Seq.T C3N-04142 CM miRNA-Seq tumor CPT0259180009 221117_UNC51-VH00562_155_AAAVL2YHV_CATGGC_S17_L001_R1_001.unaln.bam 242176415 BAM NA a981ae72-385f-4a29-b02f-a2a206f7e8fd 897af40b24c931dd3fd20564fe4b45b5 NA Primary Tumor C3N-04142-03 C3N-04151.RNA-Seq.chimeric.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.chimeric.gdc_realn.bam 201299357 BAM chimeric 10305f60-0348-4c62-a527-ec17f842558d 33125b511db82795aab443c8deff3083 hg38 Primary Tumor C3N-04151-12 C3N-04151.RNA-Seq.genomic.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.genomic.gdc_realn.bam 9613176271 BAM genomic beeb8b6e-fa5f-4470-9b67-725b4831f61b 43a7a584c0ff42fed62b31ea091660f1 hg38 Primary Tumor C3N-04151-12 C3N-04151.RNA-Seq.R1.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R1_001.fastq.gz 5881869402 FASTQ NA 1d703603-8fb9-4fa5-b995-6c362b4c63bd 931204979bdfc0a588e7ba7a7e0de572 NA Primary Tumor C3N-04151-12 @@ -38908,6 +39068,8 @@ C3N-04155.WXS.N C3N-04155 LSCC WXS blood_normal CPT0223910002 CPT0223910002.Whol C3N-04155.WXS.N.hg38 C3N-04155 LSCC WXS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wxs_gdc_realn.bam 39803597688 BAM NA e178ecd2-6264-4ec0-bc22-2c22db576e5f 08b90ed4c1f2fbf4e85acaf0ac939e90 hg38 Blood Derived Normal C3N-04155-71 C3N-04155.WXS.T C3N-04155 LSCC WXS tumor CPT0223790006 CPT0223790006.WholeExome.RP-1303.bam 27432374996 BAM NA 49b45954-a500-432c-8b5c-7fd92c2fa4c3 1f1938eb572b80275f85a563457888df hg19 Primary Tumor C3N-04155-01 C3N-04155.WXS.T.hg38 C3N-04155 LSCC WXS tumor CPT0223790006 78718394-bc16-4c02-b49f-511db21da76c_wxs_gdc_realn.bam 38063383676 BAM NA a4161921-2f2d-4c03-bada-17523cad8eb9 909adda042eedb6e0fa4c619e811742e hg38 Primary Tumor C3N-04155-01 +C3N-04156.miRNA-Seq.A C3N-04156 CM miRNA-Seq tissue_normal CPT0251020012 221118_UNC51-VH00562_156_AAAV2MKHV_CTCAGA_S24_L001_R1_001.unaln.bam 547406430 BAM NA 2117234b-1239-487b-98ae-d72cf88644f7 e2291f82f6e526dcfddd51770607e6d6 NA Solid Tissue Normal C3N-04156-06 +C3N-04156.miRNA-Seq.T C3N-04156 CM miRNA-Seq tumor CPT0251000007 221117_UNC51-VH00562_155_AAAVL2YHV_CTATAC_S25_L001_R1_001.unaln.bam 420966049 BAM NA 97d53b0f-d2ae-4233-b8cd-e08489ac8416 ef227d97f866730881fa44ec09a925cf NA Primary Tumor C3N-04156-02,C3N-04156-03 C3N-04157.MethArray.Green.A C3N-04157 LUAD Methylation Array tissue_normal CPT0251200006 203561620016_R03C01_Grn.idat 13676221 IDAT Green bbd9d62d-b19d-4fd4-857a-330a40e27d0c 2be2f030f2624136e3a42507472ca1af NA Solid Tissue Normal C3N-04157-06 C3N-04157.MethArray.Green.T C3N-04157 LUAD Methylation Array tumor CPT0251180006 203561450048_R04C01_Grn.idat 13676221 IDAT Green 62534f25-a644-4082-86db-2fc888d983ef 31ba2cfad4a1293cb31ef36cd15f7bd7 NA Primary Tumor C3N-04157-02 C3N-04157.MethArray.Red.A C3N-04157 LUAD Methylation Array tissue_normal CPT0251200006 203561620016_R03C01_Red.idat 13676221 IDAT Red 25304c76-afca-414c-aecb-10beecbb533f d6268f260ff0bc1e7fe15372f8af1e46 NA Solid Tissue Normal C3N-04157-06 @@ -39332,6 +39494,8 @@ C3N-04288.RNA-Seq.genomic.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b92 C3N-04288.RNA-Seq.R1.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ NA 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 56bad53ac19dd1f71bd6c2805eb57215 NA Primary Tumor C3N-04288-11 C3N-04288.RNA-Seq.R2.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ NA 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 552ba651ed1778af39bcd44d024bbf98 NA Primary Tumor C3N-04288-11 C3N-04288.RNA-Seq.transcriptome.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.transcriptome.gdc_realn.bam 6327404540 BAM transcriptome b18906aa-c9fa-4b98-8d86-781dd3abf6dd 76c48f78c8f261f1dd0404545fb19964 hg38 Primary Tumor C3N-04288-11 +C3N-04293.miRNA-Seq.T C3N-04293 CM miRNA-Seq tumor CPT0244700006 221117_UNC51-VH00562_155_AAAVL2YHV_CACTCA_S14_L001_R1_001.unaln.bam 163106359 BAM NA 8d0c14e5-7296-48fb-871c-560603d4af25 0e19788c9c6064410297e8668d15697f NA Primary Tumor C3N-04293-02 +C3N-04294.miRNA-Seq.T C3N-04294 CM miRNA-Seq tumor CPT0244730006 221117_UNC51-VH00562_155_AAAVL2YHV_CAGGCG_S16_L001_R1_001.unaln.bam 409162898 BAM NA 69b98484-34e8-4a45-a514-e8fe9655bea6 2e096586cdcecb5a64c5386fbad664c2 NA Primary Tumor C3N-04294-01 C3N-04312.MethArray.Green.T C3N-04312 GBM Methylation Array tumor CPT0285670006 204372030011_R01C01_Grn.idat 13677890 IDAT Green 66bf3820-3c75-417b-863f-86e0b1e44443 3f5ce1fad8fd5c4893cd42647606cca8 NA Primary Tumor C3N-04312-02 C3N-04312.MethArray.Red.T C3N-04312 GBM Methylation Array tumor CPT0285670006 204372030011_R01C01_Red.idat 13677890 IDAT Red 0d747cb9-cda6-4975-af25-5e0b39b351c7 67254b80bea4828ea03573eab55d48e8 NA Primary Tumor C3N-04312-02 C3N-04312.miRNA-Seq.T C3N-04312 GBM miRNA-Seq tumor CPT0285670009 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 273660927 BAM NA e7f6effd-e817-4e2b-8c06-576689dab185 3db8326fa4fc6c21832b4c4dc62c531d NA Primary Tumor C3N-04312-02 @@ -40019,6 +40183,11 @@ C3N-05100.WXS.N C3N-05100 LSCC WXS blood_normal CPT0321700002 CPT0321700002.Whol C3N-05100.WXS.N.hg38 C3N-05100 LSCC WXS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wxs_gdc_realn.bam 52694556758 BAM NA 05fa94e1-da84-4597-97cb-63a97ddb857b 70107fb2e1cbfa8a153512ad98e9f8e0 hg38 Blood Derived Normal C3N-05100-31 C3N-05100.WXS.T C3N-05100 LSCC WXS tumor CPT0321680006 CPT0321680006.WholeExome.RP-1303.bam 19296245113 BAM NA 5be5ff5d-0747-4e96-af04-8826353653d4 ff4ee76a5bd934ed907e29bc5ed8e1c9 hg19 Primary Tumor C3N-05100-07 C3N-05100.WXS.T.hg38 C3N-05100 LSCC WXS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wxs_gdc_realn.bam 26509937987 BAM NA 675f7e6d-bbea-44d5-9d78-5c14892feab7 84b0fcb3b2d9fbf89429d603221757b5 hg38 Primary Tumor C3N-05100-07 +C3N-05101.miRNA-Seq.A C3N-05101 CM miRNA-Seq tissue_normal CPT0438350011 221118_UNC51-VH00562_156_AAAV2MKHV_TCGAAG_S41_L001_R1_001.unaln.bam 582646525 BAM NA 372e405b-595b-4e09-b327-e8defaf60da9 fc5c2d083a436a1ea9570fa2813f9944 NA Solid Tissue Normal C3N-05101-05 +C3N-05101.miRNA-Seq.T C3N-05101 CM miRNA-Seq tumor CPT0438320007 221103_UNC51-VH00562_145_AAAVKL3HV_CACTCA_S14_L001_R1_001.unaln.bam 431492600 BAM NA 944c554c-6f4b-48ea-85e6-8c4714fab0a1 12412c211d5a4ce7df4bdcc43f049350 NA Primary Tumor C3N-05101-02,C3N-05101-04 +C3N-05106.miRNA-Seq.T C3N-05106 CM miRNA-Seq tumor CPT0438460006 221103_UNC51-VH00562_145_AAAVKL3HV_CAGGCG_S16_L001_R1_001.unaln.bam 436638030 BAM NA 8d7befe6-b725-45f9-953f-74596c2f8c95 5c19d9e699be9cbaeedae1e179465b6f NA Primary Tumor C3N-05106-01 +C3N-05107.miRNA-Seq.T C3N-05107 CM miRNA-Seq tumor CPT0438530009 221118_UNC51-VH00562_156_AAAV2MKHV_GGCTAC_S28_L001_R1_001.unaln.bam 530904188 BAM NA 6fd2827b-9fe5-4bb5-ae56-4ba70707940e 599624388ea59ea25de1cd81db297ba4 NA Primary Tumor C3N-05107-03 +C3N-05108.miRNA-Seq.T C3N-05108 CM miRNA-Seq tumor CPT0438590006 221103_UNC51-VH00562_145_AAAVKL3HV_CATGGC_S17_L001_R1_001.unaln.bam 460531135 BAM NA f1be0ed6-e3cd-4e35-a0df-37088c69b195 32f388ce1d1f735d02aabcec773d25bf NA Primary Tumor C3N-05108-04 C3N-05114.MethArray.Green.T C3N-05114 GBM Methylation Array tumor CPT0375840007 204930640011_R08C01_Grn.idat 13677900 IDAT Green 1040482c-23f2-4f97-866d-a254e656776b 68d023004d6c9da2c31e41f9b1d0417c NA Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.MethArray.Red.T C3N-05114 GBM Methylation Array tumor CPT0375840007 204930640011_R08C01_Red.idat 13677900 IDAT Red 586fbbda-3b4b-408b-866b-3580f9ae5566 d805011d60c2a087189977be59e8b37a NA Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.miRNA-Seq.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM NA b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 NA Primary Tumor C3N-05114-01,C3N-05114-02 @@ -40053,6 +40222,8 @@ C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal CPT0376440002 CPT0376440002.Whole C3N-05135.WXS.N.hg38 C3N-05135 GBM WXS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wxs_gdc_realn.bam 34914215861 BAM NA 98ae81ee-90ef-4c56-8a69-5c5b73fecfec d964c89e7489825f5bee2d3443060b98 hg38 Blood Derived Normal C3N-05135-31 C3N-05135.WXS.T C3N-05135 GBM WXS tumor CPT0376380005 CPT0376380005.WholeExome.RP-1303.bam 23767669742 BAM NA 9ae07a67-852d-4882-bd82-b1567a9d411d f7c5c2da7aa083b3a973b0e96b4111fd hg19 Primary Tumor C3N-05135-01 C3N-05135.WXS.T.hg38 C3N-05135 GBM WXS tumor CPT0376380005 f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wxs_gdc_realn.bam 31921769918 BAM NA e098c85d-4df0-4dfb-84e9-3bf91a4e3491 979be17975014a8e5f5f960338f107be hg38 Primary Tumor C3N-05135-01 +C3N-05623.miRNA-Seq.T C3N-05623 CM miRNA-Seq tumor CPT0322580009 221109_UNC51-VH00562_149_AAAV5CLHV_GAGTGG_S29_L001_R1_001.unaln.bam 396350061 BAM NA 9ae2e3c7-d0ab-409b-877c-1c3863851262 a8285d360fd616752a3ca5153ab842c8 NA Primary Tumor C3N-05623-01,C3N-05623-02 +C3N-05624.miRNA-Seq.T C3N-05624 CM miRNA-Seq tumor CPT0322650009 221109_UNC51-VH00562_149_AAAV5CLHV_GTCCGC_S35_L001_R1_001.unaln.bam 357637232 BAM NA 2a78261a-6f66-46bb-b73d-6806f17a9537 393e68d269c066c56f762c6a4934ff46 NA Primary Tumor C3N-05624-03 C3N-05629.MethArray.Green.A C3N-05629 LSCC Methylation Array tissue_normal CPT0321770006 204372030090_R08C01_Grn.idat 13677880 IDAT Green 6b68145b-a296-4fab-8e94-f5f8d325faf7 607b624f10a0e5e83411f04c5aac528c NA Solid Tissue Normal C3N-05629-06 C3N-05629.MethArray.Green.T C3N-05629 LSCC Methylation Array tumor CPT0321760006 204367490066_R05C01_Grn.idat 13677900 IDAT Green 543b66ab-9f4f-49d3-865e-e6cbafe9419a 4bc8903d923903e6cd7d14fe2168e384 NA Primary Tumor C3N-05629-01 C3N-05629.MethArray.Red.A C3N-05629 LSCC Methylation Array tissue_normal CPT0321770006 204372030090_R08C01_Red.idat 13677880 IDAT Red a660e408-0bb5-45a3-b749-ea1709dd30b0 9d82b2850bada7be0d9751f1bc1b8532 NA Solid Tissue Normal C3N-05629-06 diff --git a/CPTAC3.Demographics.dat b/CPTAC3.Demographics.dat index 0e43359..6a26e56 100644 --- a/CPTAC3.Demographics.dat +++ b/CPTAC3.Demographics.dat @@ -1,7 +1,34 @@ +case disease ethnicity gender race days_to_birth 11LU013 LUAD not hispanic or latino male asian -21627 11LU016 LUAD not hispanic or latino male asian -22733 11LU022 LUAD not hispanic or latino male asian -19370 11LU035 LUAD not hispanic or latino male asian -21677 +C1230738 GBM not reported not reported not reported null +C1245129 GBM not reported not reported not reported null +C204057 GBM not reported not reported not reported null +C207624 GBM not reported not reported not reported null +C208854 GBM not reported not reported not reported null +C217710 GBM not reported not reported not reported null +C219555 GBM not reported not reported not reported null +C223491 GBM not reported not reported not reported null +C224106 GBM not reported not reported not reported null +C224967 GBM not reported not reported not reported null +C229764 GBM not reported not reported not reported null +C231855 GBM not reported not reported not reported null +C234192 GBM not reported not reported not reported null +C2415597 GBM not reported not reported not reported null +C243048 GBM not reported not reported not reported null +C243909 GBM not reported not reported not reported null +C247230 GBM not reported not reported not reported null +C259161 GBM not reported not reported not reported null +C266664 GBM not reported not reported not reported null +C283515 GBM not reported not reported not reported null +C287328 GBM not reported not reported not reported null +C289419 GBM not reported not reported not reported null +C298152 GBM not reported not reported not reported null +C317832 GBM not reported not reported not reported null +C330255 GBM not reported not reported not reported null +C383391 GBM not reported not reported not reported null C3L-00001 LUAD not hispanic or latino female white -22455 C3L-00004 CCRCC not hispanic or latino male white -26409 C3L-00006 UCEC not hispanic or latino female white -23700 @@ -563,7 +590,7 @@ C3L-03679 LUAD not hispanic or latino male white -26038 C3L-03681 GBM not hispanic or latino female white -22946 C3L-03717 LUAD not hispanic or latino female white -19827 C3L-03721 LUAD not hispanic or latino male white -20911 -C3L-03726 LUAD not hispanic or latino male white -28285 +C3L-03726 LUAD not hispanic or latino female white -28285 C3L-03727 GBM not hispanic or latino female white -26097 C3L-03728 GBM not hispanic or latino female white -29326 C3L-03733 GBM not hispanic or latino male white -24116 @@ -1766,8 +1793,14 @@ C3N-05919 HNSCC not reported male not reported -17730 C3N-05923 LSCC not reported female not reported -27298 C3N-05929 LSCC not reported male not reported -28182 C3N-05991 GBM not reported male not reported -10474 -case disease ethnicity gender race days_to_birth -case disease ethnicity gender race days_to_birth +C464694 GBM not reported not reported not reported null +C524103 GBM not reported not reported not reported null +C621273 GBM not reported not reported not reported null +C685110 GBM not reported not reported not reported null +C760878 GBM not reported not reported not reported null +C761370 GBM not reported not reported not reported null +C827913 GBM not reported not reported not reported null +C846363 GBM not reported not reported not reported null GTEX-NPJ7-0011-R10A-SM-HAKXW GBM not reported female white null GTEX-P44H-0011-R10A-SM-HAKXX GBM not reported male white null GTEX-QVJO-0011-R10A-SM-HAKXV GBM not hispanic or latino female white null diff --git a/Catalog3/CPTAC3.Catalog3.tsv b/Catalog3/CPTAC3.Catalog3.tsv index a8205ff..149d426 100644 --- a/Catalog3/CPTAC3.Catalog3.tsv +++ b/Catalog3/CPTAC3.Catalog3.tsv @@ -50,8 +50,8 @@ dataset_name case disease experimental_strategy sample_type specimen_name filena 11LU022.WXS.N.hg38 11LU022 LUAD WXS blood_normal CPT0038140002 db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 40504340932 BAM harmonized CPTAC3 afd56e8e-f82d-4fb1-b019-2b032c763b85 ffaf8a4fa08634b783faef7f89f50435 {"aliquot_tag": "ALQ_75750200", "gdc_sample_type": "Blood Derived Normal", "state": "released"} 11LU022.WXS.T 11LU022 LUAD WXS tumor CPT0052170010 CPT0052170010.WholeExome.RP-1303.bam 28330934233 BAM submitted_aligned CPTAC3 c16296d2-2905-4ffd-a2ae-78e633da41b8 7705d783ff3553286142e89c33f813f3 {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} 11LU022.WXS.T.hg38 11LU022 LUAD WXS tumor CPT0052170010 1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 38175893642 BAM harmonized CPTAC3 8466e786-5981-421d-ab9a-a6553c5c8285 2e1c2e90519444ded5273a5a969a8407 {"aliquot_tag": "ALQ_a7df7e74", "gdc_sample_type": "Primary Tumor", "state": "released"} -11LU035.DUP_2bb40b73.WGS.T 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM submitted_aligned CPTAC3 c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -11LU035.DUP_2bb40b73.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM harmonized CPTAC3 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +11LU035.DUP_2bb40b73.WGS.T 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM submitted_aligned CPTAC3 c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +11LU035.DUP_2bb40b73.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM harmonized CPTAC3 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 {"aliquot_tag": "DUP_2bb40b73", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} 11LU035.MethArray.Green.T 11LU035 LUAD Methylation_Array tumor CPT0051690010 202178770083_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 25cc7309-ee8a-48d8-8fbb-70cd964f6a1d 522d9ff949793e9570ffc3ce07f0297b {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} 11LU035.MethArray.Red.T 11LU035 LUAD Methylation_Array tumor CPT0051690010 202178770083_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6b3c3944-68ae-40fd-b2ba-fdd81987c209 89a9dd12542058b29e141aee46a28f1c {"aliquot_tag": "ALQ_3402ea30", "gdc_sample_type": "Primary Tumor", "state": "released"} 11LU035.miRNA-Seq.S29_L007_R1.T 11LU035 LUAD miRNA-Seq tumor CPT0051690007 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L007_R1_001.unaln.bam 205078054 BAM S29_L007_R1 submitted_unaligned CPTAC3 cc308aa7-1870-40e8-bb76-17dc251cae90 ddb4ac28d86cb306dfa20ad9dd6ee61d {"aliquot_tag": "ALQ_b37d4ed2", "sample": "S29", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -4403,12 +4403,12 @@ C3L-00908.REP_9f5a3438.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0 C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R1.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R1_001.fastq.gz 4497335523 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 7b04f1ce-15c3-43d2-9286-7a6d1f15e302 c0eb97ce345891af6daf78e0298b2701 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R2.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R2_001.fastq.gz 4812306259 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 4ba00e47-13e7-4f56-b8c4-77d73ba76363 13c2d5dd46289aeb707903a147444417 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.REP_9f5a3438.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.transcriptome.gdc_realn.bam 13467018138 BAM transcriptome harmonized CPTAC3 a45675b4-d9dd-434e-bf60-1f1ba99bb365 0ef4e483876a03dc88f363f98b2ed0a0 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM submitted_aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM submitted_aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM submitted_aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM submitted_aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.RNA-Seq.chimeric.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.chimeric.gdc_realn.bam 81729999 BAM chimeric harmonized CPTAC3 15e54e5d-8151-45de-bedf-5c5b377f8cd1 2dbd687ffb1b37045ce45d0aaac7a94a {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-00908.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.chimeric.gdc_realn.bam 41299237 BAM chimeric harmonized CPTAC3 27290952-fff8-42ed-a3aa-1876caa8dd40 0fde308c07c0790ad4c285ac0f4451ba {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.RNA-Seq.genomic.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.genomic.gdc_realn.bam 6920830541 BAM genomic harmonized CPTAC3 1358f298-f323-4428-ab6c-4c9c0d1a1c36 e8aebf888d077c9b4dc6a3e6aca0e56b {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -4905,6 +4905,8 @@ C3L-00966.WXS.N C3L-00966 CCRCC WXS blood_normal CPT0100950002 CPT0100950002.Who C3L-00966.WXS.N.hg38 C3L-00966 CCRCC WXS blood_normal CPT0100950002 ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wxs_gdc_realn.bam 51799214449 BAM harmonized CPTAC3 d73cde4d-17b5-44ea-9c2b-00e50d3f5f5b aea6f4df0abb2cc96ce503216d152fa2 {"aliquot_tag": "ALQ_e5df41a", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-00966.WXS.T C3L-00966 CCRCC WXS tumor CPT0101310009 CPT0101310009.WholeExome.RP-1303.bam 34346536786 BAM submitted_aligned CPTAC3 a876152a-33bb-42f0-b328-423dd2d625e8 fc2fbea8ca0dedf2d6b74e815c098c41 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00966.WXS.T.hg38 C3L-00966 CCRCC WXS tumor CPT0101310009 f26c7002-5320-4a51-9f26-f8b0e703f019_wxs_gdc_realn.bam 46758625621 BAM harmonized CPTAC3 c66a189e-1417-4892-8ef2-a8777f0cc796 2a839c653f2a1b0f696bfd16dbc4e7a9 {"aliquot_tag": "ALQ_6be3a380", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00967.miRNA-Seq.S11_L001_R1.A C3L-00967 CM miRNA-Seq tissue_normal CPT0101550009 221118_UNC51-VH00562_156_AAAV2MKHV_CACGAT_S11_L001_R1_001.unaln.bam 621923728 BAM S11_L001_R1 submitted_unaligned CPTAC3 90bf0da0-89a7-4cff-a976-e005b68b8f5a ab60e46f3e9035f79ef0d650ffed78cb {"aliquot_tag": "ALQ_483ae65d", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-00967.miRNA-Seq.S31_L001_R1.T C3L-00967 CM miRNA-Seq tumor CPT0101530006 221111_UNC51-VH00562_151_AAATWY5HV_GCCAAT_S31_L001_R1_001.unaln.bam 297279736 BAM S31_L001_R1 submitted_unaligned CPTAC3 e5123012-09fa-4baf-9002-6e6ef6aad77f 5f6634eb318670dd539db7b2a9649fdb {"aliquot_tag": "ALQ_57c50e6c", "sample": "S31", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-00968.MethArray.Green.A C3L-00968 CCRCC Methylation_Array tissue_normal CPT0101740006 204930630034_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7f386d4e-ce25-45e9-aa74-91f3dcb315a5 6068d83f77bc233919ac522ca5b4e700 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-00968.MethArray.Green.T C3L-00968 CCRCC Methylation_Array tumor CPT0101710009 202234380099_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 5a8536f4-7a02-40f6-9acf-90db94685872 dad4ce7ce307f69f1356214c6bffdb3d {"aliquot_tag": "ALQ_f072e196", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00968.MethArray.Red.A C3L-00968 CCRCC Methylation_Array tissue_normal CPT0101740006 204930630034_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 fc7b2404-e518-495b-bfd8-c9d2e72d2c43 5e24a94e8b9543da8ae37f67573ab6e7 {"aliquot_tag": "ALQ_a82d7377", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -5200,6 +5202,7 @@ C3L-00987.WXS.N C3L-00987 HNSCC WXS blood_normal CPT0128500002 CPT0128500002.Who C3L-00987.WXS.N.hg38 C3L-00987 HNSCC WXS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wxs_gdc_realn.bam 59934678432 BAM harmonized CPTAC3 69927b12-f3d1-44d7-a4fe-4e1105cdac23 68ee17686267d946611526456be307c9 {"aliquot_tag": "ALQ_c0b5f20b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-00987.WXS.T C3L-00987 HNSCC WXS tumor CPT0127050006 CPT0127050006.WholeExome.RP-1303.bam 22898854690 BAM submitted_aligned CPTAC3 a9481942-2d76-49d4-8068-98f2bae38cfa fe4e343a442518a519bcb901b0a8283e {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00987.WXS.T.hg38 C3L-00987 HNSCC WXS tumor CPT0127050006 eb51741c-873e-42b7-98a1-79136ea048eb_wxs_gdc_realn.bam 31616417280 BAM harmonized CPTAC3 f3505d85-c1c5-417f-b519-7be074af6657 e60cbc524e7db36da85fa50ad3c7464f {"aliquot_tag": "ALQ_a9bd5838", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00989.miRNA-Seq.S8_L001_R1.T C3L-00989 CM miRNA-Seq tumor CPT0122890009 221111_UNC51-VH00562_151_AAATWY5HV_ATGTCA_S8_L001_R1_001.unaln.bam 354023845 BAM S8_L001_R1 submitted_unaligned CPTAC3 b1c73a2c-a150-423b-95c3-994dae4a1374 900312c3bdcfff525e8c7173c33d3fd5 {"aliquot_tag": "ALQ_42990562", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-00991.MethArray.Green.A C3L-00991 CCRCC Methylation_Array tissue_normal CPT0123030006 204930640122_R08C01_Grn.idat 13677965 IDAT Green NA CPTAC3 562edd46-4d7e-49fe-9c9b-76db95b72d28 8170d4463d074a7b8e55c2415122c8d0 {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-00991.MethArray.Green.T C3L-00991 CCRCC Methylation_Array tumor CPT0122990009 203219650174_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b20f069a-a02f-4de8-a009-6a81b3192967 9f1bcb9ca2699ce2962c8af2a724d6e7 {"aliquot_tag": "ALQ_89c5d6c7", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00991.MethArray.Red.A C3L-00991 CCRCC Methylation_Array tissue_normal CPT0123030006 204930640122_R08C01_Red.idat 13677965 IDAT Red NA CPTAC3 3e21cad3-46c4-4e30-b09c-3a914acb7ead 54323a405c5ee78990d81cf72603550d {"aliquot_tag": "ALQ_d2b2898b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -5826,6 +5829,8 @@ C3L-01061.WXS.N C3L-01061 GBM WXS blood_normal CPT0220160002 CPT0220160002.Whole C3L-01061.WXS.N.hg38 C3L-01061 GBM WXS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wxs_gdc_realn.bam 35226033324 BAM harmonized CPTAC3 9b3f0c7a-b5b0-4a5c-b40e-303d858ed6a6 0dd8b4e03f99e59104965424ec149a35 {"aliquot_tag": "ALQ_de06371f", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-01061.WXS.T C3L-01061 GBM WXS tumor CPT0217710011 CPT0217710011.WholeExome.RP-1303.bam 29621741414 BAM submitted_aligned CPTAC3 cb28d084-86fb-40f1-91e8-f7db9e0e7fe0 63c48def84921d989f8ef65f5befd9ed {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-01061.WXS.T.hg38 C3L-01061 GBM WXS tumor CPT0217710011 dff6198d-3541-426b-b894-d26b18d87c23_wxs_gdc_realn.bam 41045036469 BAM harmonized CPTAC3 dc60f5d5-fa33-4c3a-87b3-11225a35871f e7b66def080d57f285cf968d428d6fc3 {"aliquot_tag": "ALQ_71455184", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-01063.miRNA-Seq.S26_L001_R1.T C3L-01063 CM miRNA-Seq tumor CPT0199640009 221111_UNC51-VH00562_151_AAATWY5HV_CTCAGA_S26_L001_R1_001.unaln.bam 300086785 BAM S26_L001_R1 submitted_unaligned CPTAC3 1e1882b0-b6bf-43b0-a1e6-a92fda5954b0 76e50081218600f17665e62903d94234 {"aliquot_tag": "ALQ_df6ee80f", "sample": "S26", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-01063.miRNA-Seq.S6_L001_R1.A C3L-01063 CM miRNA-Seq tissue_normal CPT0199650008 221117_UNC51-VH00562_155_AAAVL2YHV_ATCACG_S6_L001_R1_001.unaln.bam 185118785 BAM S6_L001_R1 submitted_unaligned CPTAC3 69c4d46c-ef09-4926-a8fa-2f123810d776 1dc002f51da37630f260595fc7f3ddae {"aliquot_tag": "ALQ_9509f129", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-01064.MethArray.Green.T C3L-01064 UCEC Methylation_Array tumor CPT0113430010 203219670147_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3b1735a5-8976-4fd5-a76d-6bab9d764a88 23e3079cd6fac67e96e012c76cdd90c5 {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-01064.MethArray.Red.T C3L-01064 UCEC Methylation_Array tumor CPT0113430010 203219670147_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bcb2750-06d0-4b20-b9ba-135877abc877 45bd52288486e8f805c4661c007e4abd {"aliquot_tag": "ALQ_37d4580a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-01064.miRNA-Seq.S22_L002_R1.T C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L002_R1_001.unaln.bam 264217578 BAM S22_L002_R1 submitted_unaligned CPTAC3 05a6be11-eb40-49fb-9115-826064a9a5a6 e451c65b34491d3ac145d728ae990dfa {"aliquot_tag": "ALQ_b0abfce8", "sample": "S22", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -9330,6 +9335,7 @@ C3L-02041.WXS.N C3L-02041 GBM WXS blood_normal CPT0124240002 CPT0124240002.Whole C3L-02041.WXS.N.hg38 C3L-02041 GBM WXS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wxs_gdc_realn.bam 43967043277 BAM harmonized CPTAC3 f9e7a4d9-9f89-495b-9db9-502200a26d09 96f8add96545e56f76e69cf5acf546ea {"aliquot_tag": "ALQ_ef900e07", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-02041.WXS.T C3L-02041 GBM WXS tumor CPT0125510009 CPT0125510009.WholeExome.RP-1303.bam 40627967636 BAM submitted_aligned CPTAC3 bc28db96-ebdf-4abd-b7ef-eae25253aa77 b878d73dab800cfca228b98e37bea62e {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02041.WXS.T.hg38 C3L-02041 GBM WXS tumor CPT0125510009 e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wxs_gdc_realn.bam 55570315591 BAM harmonized CPTAC3 b9073c62-2ed2-4bfe-8ecc-154068508194 460ea9bafc0811bfa41a621332f18a6d {"aliquot_tag": "ALQ_bd063f3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02102.miRNA-Seq.S14_L001_R1.T C3L-02102 CM miRNA-Seq tumor CPT0168930009 221111_UNC51-VH00562_151_AAATWY5HV_CACTCA_S14_L001_R1_001.unaln.bam 456413203 BAM S14_L001_R1 submitted_unaligned CPTAC3 a968bddd-aee6-4a9a-ae84-237f1debcb69 1cd2fa2ef8d5caa5b0c7b567ac9f86e6 {"aliquot_tag": "ALQ_e34f9fd2", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02109.MethArray.Green.T C3L-02109 PDA Methylation_Array tumor CPT0109010010 203028200014_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 dfb41a80-435f-4a0a-9645-d0bd560b9f4e 78938de5ed3e11063e914ff9e482325c {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02109.MethArray.Red.T C3L-02109 PDA Methylation_Array tumor CPT0109010010 203028200014_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 bd0493ee-c227-4a7a-996c-786526f7918d 1fb3ed571fbe29a95efb4aacde8f7804 {"aliquot_tag": "ALQ_be5f16ac", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02109.miRNA-Seq.S33_L004_R1.T C3L-02109 PDA miRNA-Seq tumor CPT0109010007 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L004_R1_001.unaln.bam 220206075 BAM S33_L004_R1 submitted_unaligned CPTAC3 714a8d2c-00e4-41f2-b7ab-97e83963f5e4 b5e95c879717e9cf666c94d8a6c1f66a {"aliquot_tag": "ALQ_3920b24e", "sample": "S33", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -10502,8 +10508,8 @@ C3L-02364.WXS.N C3L-02364 CCRCC WXS blood_normal CPT0115270002 CPT0115270002.Who C3L-02364.WXS.N.hg38 C3L-02364 CCRCC WXS blood_normal CPT0115270002 be8f1237-9410-41ce-b51f-f44bf6373a98_wxs_gdc_realn.bam 29379243534 BAM harmonized CPTAC3 afe5004f-2697-474a-b81e-f7987f7cd071 df581dc806287680128fb637eb526d05 {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-02364.WXS.T C3L-02364 CCRCC WXS tumor CPT0113260009 CPT0113260009.WholeExome.RP-1303.bam 19066566800 BAM submitted_aligned CPTAC3 f95b60c0-6401-4e3a-9e3c-60ebbcc31cb2 0407b9f6d24dafaca6cb148598c7b6ed {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02364.WXS.T.hg38 C3L-02364 CCRCC WXS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wxs_gdc_realn.bam 26340453776 BAM harmonized CPTAC3 6aeae5c1-1438-4c81-b877-3fbc09c1a6da d627ccc95502c3d0f3077004127fe0e2 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM submitted_aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM submitted_aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02365.MethArray.Green.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c3593b4-6c5b-4da1-8084-a9d4dcce816f ee342bb20ebe602c5992e30e21836621 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-02365.MethArray.Green.T C3L-02365 LUAD Methylation_Array tumor CPT0114840009 202234370079_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6a029c9-907e-42bf-b35e-9327945ee385 6d7a82e273411bf0ba42c3138f6a6622 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02365.MethArray.Red.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f777f75b-bbe5-44de-89d5-a303cd6b132c 32dbb653f900c4616e3f3646541972e7 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -11563,6 +11569,7 @@ C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007_1 CPT0124610007_1.WholeExo C3L-02613.WXS.T C3L-02613 PDA WXS tumor CPT0124610007 CPT0124610007.WholeExome.RP-1303.bam 28889722767 BAM submitted_aligned CPTAC3 48ec5acd-a7f0-4c67-8a26-e72663be71f1 3277a2228a8562e63c8ce724f65fc026 {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007_1 db70cb1d-4e2d-4341-98d3-4aea5e5ea3ca_wxs_gdc_realn.bam 83419348043 BAM harmonized CPTAC3 715898e2-7575-4a70-8b17-60d4e123d99c 506786c9172edaad3da89cea514f6c75 {"aliquot_tag": "ALQ_5564e4b8", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02613.WXS.T.hg38 C3L-02613 PDA WXS tumor CPT0124610007 77d62c85-36de-4df8-869f-e652588bcf8a_wxs_gdc_realn.bam 38712293216 BAM harmonized CPTAC3 4e26c6a2-f913-410a-9f9e-afb274c0d487 72531e47a34f77794f8b495ba31ebe0a {"aliquot_tag": "ALQ_cc8b37ee", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02615.miRNA-Seq.S5_L001_R1.T C3L-02615 CM miRNA-Seq tumor CPT0228340010 221117_UNC51-VH00562_155_AAAVL2YHV_AGTTCC_S5_L001_R1_001.unaln.bam 394201655 BAM S5_L001_R1 submitted_unaligned CPTAC3 e7bdff62-afe4-4dd1-919c-5d83f2ebf8ec 689c3a0c495f3a0fb1c96245b3c6687a {"aliquot_tag": "ALQ_2df4db7e", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02616.MethArray.Green.A C3L-02616 LUAD Methylation_Array tissue_normal CPT0192250006 203219650136_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 f8a09345-9367-4afc-a614-35a6cbaa56db ded388a7d659aaf297d0a5f5f03e57cd {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-02616.MethArray.Green.T C3L-02616 LUAD Methylation_Array tumor CPT0192240006 203219720211_R04C01_Grn.idat 13676245 IDAT Green NA CPTAC3 65abfd21-97b4-4c01-9503-00df09c9eedc 6975f38ca3b1986b1abae6b1f018f7f3 {"aliquot_tag": "ALQ_d647e372", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02616.MethArray.Red.A C3L-02616 LUAD Methylation_Array tissue_normal CPT0192250006 203219650136_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1d3e1816-32a3-46ea-8960-dc69b204aa48 bdbb6c97932fb7e15c630e89a417e626 {"aliquot_tag": "ALQ_eb27cac2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -11714,6 +11721,8 @@ C3L-02621.WXS.N C3L-02621 HNSCC WXS blood_normal CPT0201970002 CPT0201970002.Who C3L-02621.WXS.N.hg38 C3L-02621 HNSCC WXS blood_normal CPT0201970002 02f60b7f-627c-467f-82d6-b766f213c238_wxs_gdc_realn.bam 39020161451 BAM harmonized CPTAC3 fd50b411-9585-42dc-adbb-a6dcaed253ad 050923e3eded89b5c26a0a3c0984093a {"aliquot_tag": "ALQ_eb67900b", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-02621.WXS.T C3L-02621 HNSCC WXS tumor CPT0201830007 CPT0201830007.WholeExome.RP-1303.bam 24957617938 BAM submitted_aligned CPTAC3 9e30c2a0-7698-42e7-9dcc-da1f0bcccef3 d53a7b6472641aff9f4c096376ec9d71 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02621.WXS.T.hg38 C3L-02621 HNSCC WXS tumor CPT0201830007 4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wxs_gdc_realn.bam 34462296906 BAM harmonized CPTAC3 cdabe1b1-bec3-4fc9-9d68-adb41cf03a19 abfc7d8396ae1caabbb71edb962b3023 {"aliquot_tag": "ALQ_a5d111e1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02622.miRNA-Seq.S35_L001_R1.A C3L-02622 CM miRNA-Seq tissue_normal CPT0202910011 221117_UNC51-VH00562_155_AAAVL2YHV_GTCCGC_S35_L001_R1_001.unaln.bam 382911247 BAM S35_L001_R1 submitted_unaligned CPTAC3 29bc9e07-0d03-4009-9e37-339b1f7048fd f7ce6432c82877a729e26de269491cd4 {"aliquot_tag": "ALQ_d5dd1fcd", "sample": "S35", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-02622.miRNA-Seq.S44_L001_R1.T C3L-02622 CM miRNA-Seq tumor CPT0202860010 221111_UNC51-VH00562_151_AAATWY5HV_TCCCGA_S44_L001_R1_001.unaln.bam 391940465 BAM S44_L001_R1 submitted_unaligned CPTAC3 04b5171e-a4e7-4f52-9e39-7e1cd1c5523c 104cd2346c3fcaa4683b290364e4ab47 {"aliquot_tag": "ALQ_dba620ee", "sample": "S44", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02624.MethArray.Green.A C3L-02624 LSCC Methylation_Array tissue_normal CPT0227070006 203219670117_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d70d0285-26a9-4267-b68d-b1ad8edd7a6e a7253c9e661061dec9ba08cbe08d6a14 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-02624.MethArray.Green.T C3L-02624 LSCC Methylation_Array tumor CPT0227020006 203219670106_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 81f1f759-5301-479d-bcfe-56722228c718 1dce7b4195732e54989e0d6f20f95d8d {"aliquot_tag": "ALQ_2210b8ed", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02624.MethArray.Red.A C3L-02624 LSCC Methylation_Array tissue_normal CPT0227070006 203219670117_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 cc38e3ac-6db8-4c33-93db-3ee6123cc8db 97afcd65f3e933e93a8dc4f4c4d151e9 {"aliquot_tag": "ALQ_eaf0379d", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -11913,6 +11922,7 @@ C3L-02646.WXS.N C3L-02646 LSCC WXS blood_normal CPT0202660002 CPT0202660002.Whol C3L-02646.WXS.N.hg38 C3L-02646 LSCC WXS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wxs_gdc_realn.bam 23162153244 BAM harmonized CPTAC3 3ec28d87-2158-4bc0-a3b4-7a1c7d9baff8 bdcdaef801ccf6563b046b15cc9afc25 {"aliquot_tag": "ALQ_16b911f3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-02646.WXS.T C3L-02646 LSCC WXS tumor CPT0202530007 CPT0202530007.WholeExome.RP-1303.bam 19663876599 BAM submitted_aligned CPTAC3 7346604b-0377-403f-99d9-b26515e55d25 c479fd855a2233f4927c6268589afaf3 {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02646.WXS.T.hg38 C3L-02646 LSCC WXS tumor CPT0202530007 ffb7f59b-2554-45af-a0be-67a3c8c475e0_wxs_gdc_realn.bam 26923683521 BAM harmonized CPTAC3 b8b6ee6f-d4e3-40b6-926f-aa52eaa5189d 3724766e5a532e4ac4fb645a19181aaf {"aliquot_tag": "ALQ_28a718a2", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-02647.miRNA-Seq.S28_L001_R1.T C3L-02647 CM miRNA-Seq tumor CPT0193080010 221111_UNC51-VH00562_151_AAATWY5HV_GACGAC_S28_L001_R1_001.unaln.bam 409800550 BAM S28_L001_R1 submitted_unaligned CPTAC3 3659db8a-edd5-438c-886f-73bfdef5684e 1d4564183ffe61462501863505b0c402 {"aliquot_tag": "ALQ_87030b8", "sample": "S28", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02648.MethArray.Green.A C3L-02648 LSCC Methylation_Array tissue_normal CPT0204660006 203219650211_R04C01_Grn.idat 13676236 IDAT Green NA CPTAC3 0c9bf495-bc88-4663-9748-bfc14e04a032 0dde143ef8afc5085a83fce1b3d0ab0d {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-02648.MethArray.Green.T C3L-02648 LSCC Methylation_Array tumor CPT0204600010 203219650100_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 878c0113-50fe-4e8a-b648-1c9a5145a4a1 6d77e53d08c5db073ddef04fa58eea1c {"aliquot_tag": "ALQ_d3c8104", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02648.MethArray.Red.A C3L-02648 LSCC Methylation_Array tissue_normal CPT0204660006 203219650211_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 687a598e-a09c-48d2-be22-24a5ebd6705f 646a513edc1e42f6f712eddb25d771b2 {"aliquot_tag": "ALQ_7204e0d0", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -13589,6 +13599,12 @@ C3L-03356.WXS.N C3L-03356 PDA WXS blood_normal CPT0198450002 CPT0198450002.Whole C3L-03356.WXS.N.hg38 C3L-03356 PDA WXS blood_normal CPT0198450002 78376e37-140d-4c03-a35f-64b8ec950598_wxs_gdc_realn.bam 28372322137 BAM harmonized CPTAC3 bf6fe2a5-f454-42ea-93d0-d11496684867 075810bb6a5b34b093708b0b45362126 {"aliquot_tag": "ALQ_9e63b288", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-03356.WXS.T C3L-03356 PDA WXS tumor CPT0198420007 CPT0198420007.WholeExome.RP-1303.bam 55677693404 BAM submitted_aligned CPTAC3 6a9c3d44-a585-46df-a16a-7e5908ac5866 47054d87506eeb8f143645e8946879c6 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-03356.WXS.T.hg38 C3L-03356 PDA WXS tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_wxs_gdc_realn.bam 77207880644 BAM harmonized CPTAC3 a0bb9942-5291-4181-a01d-2cdd31ee6c8b 2bcd08ba2a12dd5eec3cfc317c2b74b1 {"aliquot_tag": "ALQ_5c299a17", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03362.miRNA-Seq.S23_L001_R1.A C3L-03362 CM miRNA-Seq tissue_normal CPT0284740011 221109_UNC51-VH00562_149_AAAV5CLHV_CGTACG_S23_L001_R1_001.unaln.bam 387492883 BAM S23_L001_R1 submitted_unaligned CPTAC3 e85a6c81-8c62-4983-b8f0-673f7e21f6b2 f031622950a8672e3f22d67d721154cb {"aliquot_tag": "ALQ_9702df42", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03362.miRNA-Seq.S47_L001_R1.T C3L-03362 CM miRNA-Seq tumor CPT0284730009 221109_UNC51-VH00562_149_AAAV5CLHV_TGACCA_S47_L001_R1_001.unaln.bam 412054550 BAM S47_L001_R1 submitted_unaligned CPTAC3 99e8ec69-c141-452f-9e15-488ac67b95e5 f761ad828a9ce12b1db9b684a7769249 {"aliquot_tag": "ALQ_32e2ba21", "sample": "S47", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03364.miRNA-Seq.S1_L001_R1.T C3L-03364 CM miRNA-Seq tumor CPT0284960009 221109_UNC51-VH00562_149_AAAV5CLHV_ACAGTG_S1_L001_R1_001.unaln.bam 383734029 BAM S1_L001_R1 submitted_unaligned CPTAC3 700d0b62-be40-434d-aa60-f6ac668b85d0 021e8757b73237f3f18dd5e96aa53bf9 {"aliquot_tag": "ALQ_c0085421", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03364.miRNA-Seq.S8_L001_R1.A C3L-03364 CM miRNA-Seq tissue_normal CPT0284980008 221109_UNC51-VH00562_149_AAAV5CLHV_ATGTCA_S8_L001_R1_001.unaln.bam 411093870 BAM S8_L001_R1 submitted_unaligned CPTAC3 7c760578-a425-4b78-934d-4e4088eb6741 1a745367b0590404f3c90b08391d8778 {"aliquot_tag": "ALQ_83fdad6", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03367.miRNA-Seq.S10_L001_R1.A C3L-03367 CM miRNA-Seq tissue_normal CPT0239710006 221117_UNC51-VH00562_155_AAAVL2YHV_CAAAAG_S10_L001_R1_001.unaln.bam 475911772 BAM S10_L001_R1 submitted_unaligned CPTAC3 c8229522-a859-4ea6-a602-b67715177698 da83b83b5d6e941bc700d826d0b7c9ad {"aliquot_tag": "ALQ_e4208946", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03367.miRNA-Seq.S38_L001_R1.T C3L-03367 CM miRNA-Seq tumor CPT0239700009 221117_UNC51-VH00562_155_AAAVL2YHV_GTTTCG_S38_L001_R1_001.unaln.bam 320508347 BAM S38_L001_R1 submitted_unaligned CPTAC3 82731ff7-cec0-466f-8f29-2b549d26d23d f637743056f4650551a1fd332188bf0a {"aliquot_tag": "ALQ_49ffbd67", "sample": "S38", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03371.MethArray.Green.A C3L-03371 PDA Methylation_Array tissue_normal CPT0275880006 203561620086_R08C01_Grn.idat 13676236 IDAT Green NA CPTAC3 7a042bdb-d1bf-41ab-8fca-ed336cbb2974 e08e698690f1c4451d4ed22d7dc078db {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-03371.MethArray.Green.T C3L-03371 PDA Methylation_Array tumor CPT0275870006 203561450018_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e14cb9cd-570c-4145-ae3f-02f9f0981332 842cda824b92d0f0a7fdce2b92794083 {"aliquot_tag": "ALQ_d9dcaabd", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03371.MethArray.Red.A C3L-03371 PDA Methylation_Array tissue_normal CPT0275880006 203561620086_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 e4bb1a5d-7db1-4b58-96fa-6bc7ca72575a 0b5139a6bee5557fa7be9e062bbc4d43 {"aliquot_tag": "ALQ_5b8c3d6c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -13629,6 +13645,10 @@ C3L-03372.WXS.N C3L-03372 GBM WXS blood_normal CPT0265940002 CPT0265940002.Whole C3L-03372.WXS.N.hg38 C3L-03372 GBM WXS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wxs_gdc_realn.bam 29617153769 BAM harmonized CPTAC3 232df735-b856-4f31-840a-0e28d746748a 136569dab8570fd707f335939ea98076 {"aliquot_tag": "ALQ_9ee7c74f", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-03372.WXS.T C3L-03372 GBM WXS tumor CPT0275960006 CPT0275960006.WholeExome.RP-1303.bam 20594156903 BAM submitted_aligned CPTAC3 7ffb97bc-1694-49bb-aa91-9bdccd83d539 199d2579fa9baadd047e8b72a7488b61 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03372.WXS.T.hg38 C3L-03372 GBM WXS tumor CPT0275960006 0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM harmonized CPTAC3 0dd34017-3bea-4078-bfb6-359d08615f12 198bfc39e983233ae7667b9264d80326 {"aliquot_tag": "ALQ_2fe050a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03374.miRNA-Seq.S19_L001_R1.A C3L-03374 CM miRNA-Seq tissue_normal CPT0240170020 221118_UNC51-VH00562_156_AAAV2MKHV_CGATGT_S19_L001_R1_001.unaln.bam 537808217 BAM S19_L001_R1 submitted_unaligned CPTAC3 eb504f07-ea6b-4643-a042-d4f87216d4a3 c9b0639d8b61ef2fd61e14810e53a4ab {"aliquot_tag": "ALQ_f9311486", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03374.miRNA-Seq.S20_L001_R1.T C3L-03374 CM miRNA-Seq tumor CPT0240150009 221117_UNC51-VH00562_155_AAAVL2YHV_CCGTCC_S20_L001_R1_001.unaln.bam 334157357 BAM S20_L001_R1 submitted_unaligned CPTAC3 5fea8d1e-ce4e-4d3c-973b-4a68ddcf02df e29aa7e38e121fc26b27c555b6440f0b {"aliquot_tag": "ALQ_c81b9dc0", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03377.miRNA-Seq.S11_L001_R1.A C3L-03377 CM miRNA-Seq tissue_normal CPT0239780006 221117_UNC51-VH00562_155_AAAVL2YHV_CAACTA_S11_L001_R1_001.unaln.bam 455308813 BAM S11_L001_R1 submitted_unaligned CPTAC3 e258a1de-d203-4532-adc6-5b5d005f9b86 b1d3063cf0d0dbd59f6e6405fac5c5ff {"aliquot_tag": "ALQ_e930eb37", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03377.miRNA-Seq.S23_L001_R1.T C3L-03377 CM miRNA-Seq tumor CPT0239770009 221117_UNC51-VH00562_155_AAAVL2YHV_CGTACG_S23_L001_R1_001.unaln.bam 481197774 BAM S23_L001_R1 submitted_unaligned CPTAC3 3ad2c6b5-11c5-4650-8d94-d400857ab7c2 4890fa4aee66a21a24b9d47091e32210 {"aliquot_tag": "ALQ_fbdf6177", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03378.MethArray.Green.A C3L-03378 HNSCC Methylation_Array tissue_normal CPT0199890006 203219650047_R07C01_Grn.idat 13676206 IDAT Green NA CPTAC3 8c8121bd-3054-4f6e-96b2-308969eef29b c9e7e8a6d51f28c36f824b900ac9f415 {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-03378.MethArray.Green.T C3L-03378 HNSCC Methylation_Array tumor CPT0199880006 203271740119_R02C01_Grn.idat 13676206 IDAT Green NA CPTAC3 e0486f30-6012-4751-ae3d-87e7c4be7cb7 e9486658a8113b21cd271b32665c008f {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-03378.MethArray.Red.A C3L-03378 HNSCC Methylation_Array tissue_normal CPT0199890006 203219650047_R07C01_Red.idat 13676206 IDAT Red NA CPTAC3 d7dd3702-b506-4b4f-9822-aeb1d9fed0b8 2364a3ab8d1ea1d9bf008cf8165ab45c {"aliquot_tag": "ALQ_8d4b505f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -13662,6 +13682,10 @@ C3L-03378.WXS.N C3L-03378 HNSCC WXS blood_normal CPT0200430002 CPT0200430002.Who C3L-03378.WXS.N.hg38 C3L-03378 HNSCC WXS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wxs_gdc_realn.bam 34848697712 BAM harmonized CPTAC3 8a903c70-64d6-4282-8503-3be43feb7c26 55c17e0a5fe1dfe793d4a8ea93160f18 {"aliquot_tag": "ALQ_40e2ea1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-03378.WXS.T C3L-03378 HNSCC WXS tumor CPT0199880006 CPT0199880006.WholeExome.RP-1303.bam 23450041321 BAM submitted_aligned CPTAC3 4f0f5d96-1633-433d-ab31-acf10464c942 e7f1527f1f19d25c67c502c78fa9fe37 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-03378.WXS.T.hg38 C3L-03378 HNSCC WXS tumor CPT0199880006 3a309e18-6adc-4200-9961-4f696fcb2984_wxs_gdc_realn.bam 32364936005 BAM harmonized CPTAC3 344731e5-c562-4645-a65c-c1fa7eefed6d 80a1c29338b3b5d2bc8ac611c76ffc86 {"aliquot_tag": "ALQ_b02b79ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-03381.miRNA-Seq.S36_L001_R1.T C3L-03381 CM miRNA-Seq tumor CPT0240240009 221117_UNC51-VH00562_155_AAAVL2YHV_GTGAAA_S36_L001_R1_001.unaln.bam 329802568 BAM S36_L001_R1 submitted_unaligned CPTAC3 01680c94-e4a8-4ce0-a169-3b3b2e41b0e7 b5073d73c90d1b5b3cbcc98206c8851e {"aliquot_tag": "ALQ_73efc6de", "sample": "S36", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-03381.miRNA-Seq.S7_L001_R1.A C3L-03381 CM miRNA-Seq tissue_normal CPT0240260011 221117_UNC51-VH00562_155_AAAVL2YHV_ATGAGC_S7_L001_R1_001.unaln.bam 385650081 BAM S7_L001_R1 submitted_unaligned CPTAC3 d19dff92-1ad3-4c54-b756-eb84dd871526 5557d77ec82a382037206f4f0702912b {"aliquot_tag": "ALQ_1eef2ccd", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03382.miRNA-Seq.S12_L001_R1.A C3L-03382 CM miRNA-Seq tissue_normal CPT0240350005 221117_UNC51-VH00562_155_AAAVL2YHV_CACCGG_S12_L001_R1_001.unaln.bam 480728775 BAM S12_L001_R1 submitted_unaligned CPTAC3 1321a20d-64d1-4998-a500-d8ee87f2197d d1352a9723e759663092f8479d5f2951 {"aliquot_tag": "ALQ_8c6570e0", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-03382.miRNA-Seq.S37_L001_R1.T C3L-03382 CM miRNA-Seq tumor CPT0240330009 221117_UNC51-VH00562_155_AAAVL2YHV_GTGGCC_S37_L001_R1_001.unaln.bam 393512446 BAM S37_L001_R1 submitted_unaligned CPTAC3 ff0cb50d-f875-449f-9b98-28412b2b57f8 3b12441d684f5bc36dd7e1513bfdab7a {"aliquot_tag": "ALQ_a93c96b", "sample": "S37", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03385.MethArray.Green.T C3L-03385 GBM Methylation_Array tumor CPT0239860006 204367490084_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 c5ef413a-9205-4a5a-a7ab-f2f44ee7ee5c 7e6e7f457338632f64f6d1101fcaa1c7 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03385.MethArray.Red.T C3L-03385 GBM Methylation_Array tumor CPT0239860006 204367490084_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 7bd922bd-4827-46be-b430-59a771ae6168 4e52ca91348a55ff6c64cb81678c1f60 {"aliquot_tag": "ALQ_a756e783", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03385.miRNA-Seq.S7_L001_R1.T C3L-03385 GBM miRNA-Seq tumor CPT0239860013 200526_UNC32-K00270_0248_BHH7WFBBXY_CGATGT_S7_L001_R1_001.unaln.bam 380895617 BAM S7_L001_R1 submitted_unaligned CPTAC3 79b8f443-cb3f-491e-92ee-0fa93d0fe1cd fa84b0b0bce05fa4a47530b31493c085 {"aliquot_tag": "ALQ_ce27224d", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -14870,6 +14894,7 @@ C3L-03987.WXS.N C3L-03987 LSCC WXS blood_normal CPT0252700002 CPT0252700002.Whol C3L-03987.WXS.N.hg38 C3L-03987 LSCC WXS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wxs_gdc_realn.bam 27830022718 BAM harmonized CPTAC3 1227fac0-e088-48bf-87be-e91b7a5a7292 0c675a7a2a89dd59f10f83e7499a757a {"aliquot_tag": "ALQ_1a453992", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-03987.WXS.T C3L-03987 LSCC WXS tumor CPT0252540006 CPT0252540006.WholeExome.RP-1303.bam 32209599109 BAM submitted_aligned CPTAC3 b9048b2b-a34f-4e83-b0a7-f74440cabc52 2b53e7803b3a1f255fcb32eb69daeebf {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-03987.WXS.T.hg38 C3L-03987 LSCC WXS tumor CPT0252540006 a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wxs_gdc_realn.bam 43630345732 BAM harmonized CPTAC3 b07e8ade-3e51-45c1-a170-5c9eed214522 a0b00bb5e32f6935d2fd2c2a25cbafcf {"aliquot_tag": "ALQ_a560fa40", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04011.miRNA-Seq.S2_L001_R1.T C3L-04011 CM miRNA-Seq tumor CPT0242880009 221117_UNC51-VH00562_155_AAAVL2YHV_ACTGAT_S2_L001_R1_001.unaln.bam 404523703 BAM S2_L001_R1 submitted_unaligned CPTAC3 3c49e29c-318a-4df9-8f74-64490481c709 39908dd8995dbd905fcb7ee52a60fed5 {"aliquot_tag": "ALQ_801b1990", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04013.MethArray.Green.A C3L-04013 LSCC Methylation_Array tissue_normal CPT0233330006 203220070171_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3b1e79f4-043c-4da0-bb92-8865bbd780f6 9fb669cf7c33c0b2fc197330e8433f1f {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-04013.MethArray.Green.T C3L-04013 LSCC Methylation_Array tumor CPT0233320006 203219670117_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 d9c4f0cb-d26b-46c6-8937-9e7a19a909ab 2aae3ac1a73548f64b33ee1a00f67abf {"aliquot_tag": "ALQ_9c61eece", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-04013.MethArray.Red.A C3L-04013 LSCC Methylation_Array tissue_normal CPT0233330006 203220070171_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 6233e085-48e4-465e-a6a1-fe3c48ce6f12 c0fe201ce0588ce995aa3e2fcb6a9c26 {"aliquot_tag": "ALQ_a101c77e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -15345,6 +15370,8 @@ C3L-04199.RNA-Seq.genomic.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9f C3L-04199.RNA-Seq.S77_R1.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ S77_R1 submitted_unaligned CPTAC3 412d9433-a40f-425b-a16b-ecd6ae4dccff ae54f8c762b3e3ea8b61bc4e83e57613 {"aliquot_tag": "ALQ_d7a9e289", "sample": "S77", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04199.RNA-Seq.S77_R2.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ S77_R2 submitted_unaligned CPTAC3 77f0aee6-1661-4c2d-958f-16e073935dd2 8e89fade1183b3cbf362c7f71efb45a0 {"aliquot_tag": "ALQ_d7a9e289", "sample": "S77", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04199.RNA-Seq.transcriptome.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.transcriptome.gdc_realn.bam 7505462055 BAM transcriptome harmonized CPTAC3 93a2efe1-cb3e-4a5b-8372-bc036683ae3b 16285eb411786115f01b2703c1b43572 {"aliquot_tag": "ALQ_d7a9e289", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04207.miRNA-Seq.S12_L001_R1.A C3L-04207 CM miRNA-Seq tissue_normal CPT0325700009 221109_UNC51-VH00562_149_AAAV5CLHV_CACCGG_S12_L001_R1_001.unaln.bam 501090404 BAM S12_L001_R1 submitted_unaligned CPTAC3 624f05f7-974e-4e54-8f61-d8c52a99e01f 24027d72c1503f8d3ae92ee19d4f816c {"aliquot_tag": "ALQ_558ec3ce", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04212.miRNA-Seq.S2_L001_R1.A C3L-04212 CM miRNA-Seq tissue_normal CPT0270640006 221109_UNC51-VH00562_149_AAAV5CLHV_ACTGAT_S2_L001_R1_001.unaln.bam 601165869 BAM S2_L001_R1 submitted_unaligned CPTAC3 edf78c69-a062-46a7-a9a2-203f2ea1ba6c 8b4583278ad5fd6146958d51d9db3d79 {"aliquot_tag": "ALQ_f64e9eba", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-04213.MethArray.Green.T C3L-04213 GBM Methylation_Array tumor CPT0277180006 204367490030_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99a416e8-f01b-4505-9f64-75fdd5c86d5b 8d552955eeb20ee0366d8e04097d7738 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04213.MethArray.Red.T C3L-04213 GBM Methylation_Array tumor CPT0277180006 204367490030_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 61764414-eaf2-4995-aab3-6177e0ce485e 94c47d82a307a15054c123e533217b76 {"aliquot_tag": "ALQ_eb1c7d8d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04213.miRNA-Seq.S7_L001_R1.T C3L-04213 GBM miRNA-Seq tumor CPT0277180009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 247132876 BAM S7_L001_R1 submitted_unaligned CPTAC3 4a732346-4aee-42d0-80e9-32fe22a79b68 0110a279fa78eaf70cae0563b4113dcb {"aliquot_tag": "ALQ_7ba3601c", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -15566,6 +15593,7 @@ C3L-04270.WXS.Nbc C3L-04270 AML WXS buccal_normal CPT0280050001 CPT0280050001.Wh C3L-04270.WXS.Nbc.hg38 C3L-04270 AML WXS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wxs_gdc_realn.bam 33432029614 BAM harmonized CPTAC3 b6bbc306-2ab1-45d3-9d04-6aca54c65c17 50a2da4765827ed63c8c411bf38b2be0 {"aliquot_tag": "ALQ_5a33d318", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-04270.WXS.Tbm C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeExome.RP-1303.bam 21736140676 BAM submitted_aligned CPTAC3 778d053c-1d97-4b94-82a5-14abc9ac93e6 8fc5e43233c4fc7240969dc4e576da84 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-04270.WXS.Tbm.hg38 C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wxs_gdc_realn.bam 29926952849 BAM harmonized CPTAC3 9373160f-3fdc-4920-8d50-c2ff94a07743 c247b13c7d53eedb4da392bed9fedb01 {"aliquot_tag": "ALQ_b9fad1c2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-04331.miRNA-Seq.S21_L001_R1.T C3L-04331 CM miRNA-Seq tumor CPT0270410013 221109_UNC51-VH00562_149_AAAV5CLHV_CGATGT_S21_L001_R1_001.unaln.bam 378166291 BAM S21_L001_R1 submitted_unaligned CPTAC3 493d8d4b-f472-4a11-87c7-61bc4e32b70b 7ab1a86e4d8d197a201a849b6335d74a {"aliquot_tag": "ALQ_1a17750f", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04336.MethArray.Green.A C3L-04336 LSCC Methylation_Array tissue_normal CPT0256900006 204372030139_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e5a30652-4ae5-4f37-b136-5861117ba429 f3dc687d652f7979064e2a11dbe626ce {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-04336.MethArray.Green.T C3L-04336 LSCC Methylation_Array tumor CPT0256850006 204372030087_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 33b632d9-99ed-4e15-8709-9b7c0503cc47 7218dc45e4cbfefcb82c755e1e95a880 {"aliquot_tag": "ALQ_d0d1e43d", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04336.MethArray.Red.A C3L-04336 LSCC Methylation_Array tissue_normal CPT0256900006 204372030139_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 83d66753-5de6-49f6-be0f-917e0870fd75 342c9a485ffd7ea9f15c6b37d0adf736 {"aliquot_tag": "ALQ_d36db8e8", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -16234,6 +16262,10 @@ C3L-04731.WXS.N C3L-04731 GBM WXS blood_normal CPT0258420002 CPT0258420002.Whole C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM harmonized CPTAC3 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 8418032c2ac0c9aef8c83e96e96217be {"aliquot_tag": "ALQ_42614712", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-04731.WXS.T C3L-04731 GBM WXS tumor CPT0258360006 CPT0258360006.WholeExome.RP-1303.bam 19673439486 BAM submitted_aligned CPTAC3 c4fe1c9a-c8ad-4d80-9f4e-f046c886dae5 a8efa9dbb7abd3bed9213d43d614688d {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor CPT0258360006 b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM harmonized CPTAC3 b265dc17-8180-4962-8576-87cfde01f80d 46a6dfb7b0d1b6e6583f89080aba698e {"aliquot_tag": "ALQ_ad891573", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04732.miRNA-Seq.S36_L001_R1.T C3L-04732 CM miRNA-Seq tumor CPT0297220009 221109_UNC51-VH00562_149_AAAV5CLHV_GTGAAA_S36_L001_R1_001.unaln.bam 450348592 BAM S36_L001_R1 submitted_unaligned CPTAC3 ec446421-6e76-4310-bd75-b05c6d7be23e 730c642d68cff91821894d8e74a63d49 {"aliquot_tag": "ALQ_a20d1821", "sample": "S36", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04733.miRNA-Seq.S18_L001_R1.A C3L-04733 CM miRNA-Seq tissue_normal CPT0246410007 221117_UNC51-VH00562_155_AAAVL2YHV_CATTTT_S18_L001_R1_001.unaln.bam 431610642 BAM S18_L001_R1 submitted_unaligned CPTAC3 8d6a0927-c828-496c-baab-0f4e58374e53 7029a1f7ad56d8c75fa700b4d87f00f8 {"aliquot_tag": "ALQ_e93eb28e", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-04733.miRNA-Seq.S33_L001_R1.T C3L-04733 CM miRNA-Seq tumor CPT0246390009 221117_UNC51-VH00562_155_AAAVL2YHV_GGTAGC_S33_L001_R1_001.unaln.bam 225604891 BAM S33_L001_R1 submitted_unaligned CPTAC3 1cbdd4ed-3a5d-4018-9571-6dacfa5e62d9 5070f2ba7df969f71968e32d70c41134 {"aliquot_tag": "ALQ_23f3e4f0", "sample": "S33", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04739.miRNA-Seq.S37_L001_R1.T C3L-04739 CM miRNA-Seq tumor CPT0304820009 221109_UNC51-VH00562_149_AAAV5CLHV_GTGGCC_S37_L001_R1_001.unaln.bam 374744740 BAM S37_L001_R1 submitted_unaligned CPTAC3 08c89d9a-8def-4b65-bfad-825d859f2340 a0cfdff3e26eee8dcfa3a1281648730f {"aliquot_tag": "ALQ_3a4a2eb2", "sample": "S37", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04746.MethArray.Green.A C3L-04746 LSCC Methylation_Array tissue_normal CPT0279080006 204372030024_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 a8825ca1-fb1e-48ec-9cd6-2131c70996c8 753dbabbaa9d60d63aebd8ccce6aa33b {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-04746.MethArray.Green.T C3L-04746 LSCC Methylation_Array tumor CPT0279010009 204367490048_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 29d7154f-adc3-4363-950e-e79cfb89f50f ab18be313a2ea7fac3e3bdf9ca587b20 {"aliquot_tag": "ALQ_edd0aa95", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04746.MethArray.Red.A C3L-04746 LSCC Methylation_Array tissue_normal CPT0279080006 204372030024_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 3d44d3ca-ee6c-4bf4-965c-55ef379be7bf 3ba3ce1714c3c3c4b2d1d744b9328d22 {"aliquot_tag": "ALQ_707fd575", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -16455,6 +16487,8 @@ C3L-04786.WXS.N C3L-04786 LSCC WXS blood_normal CPT0279350002 CPT0279350002.Whol C3L-04786.WXS.N.hg38 C3L-04786 LSCC WXS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wxs_gdc_realn.bam 29932093972 BAM harmonized CPTAC3 487e9694-73fd-4a5f-ab4d-1d2171cd4757 d35f7ee4ceffe6b031125c217a97efe9 {"aliquot_tag": "ALQ_916a773", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-04786.WXS.T C3L-04786 LSCC WXS tumor CPT0279210009 CPT0279210009.WholeExome.RP-1303.bam 19018558188 BAM submitted_aligned CPTAC3 0bcc5c8f-1ac0-498c-af74-487a33625516 b3d82b85f96f75bfd4ab5daf730c4c69 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-04786.WXS.T.hg38 C3L-04786 LSCC WXS tumor CPT0279210009 3feebd7d-0450-44eb-9c19-f112017bcf12_wxs_gdc_realn.bam 26094775383 BAM harmonized CPTAC3 15f12617-0664-4865-884b-d0b00331f2a2 a4cb29558e161746cfc47358c0fc7e98 {"aliquot_tag": "ALQ_a0180b9e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04787.miRNA-Seq.S19_L001_R1.T C3L-04787 CM miRNA-Seq tumor CPT0250070009 221117_UNC51-VH00562_155_AAAVL2YHV_CCAACA_S19_L001_R1_001.unaln.bam 484434109 BAM S19_L001_R1 submitted_unaligned CPTAC3 8ac3676e-0c3c-477c-bfb0-da4ba364bcba 83ba376b72c14ffa1a90643aedead5f5 {"aliquot_tag": "ALQ_b52d1d9b", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-04787.miRNA-Seq.S23_L001_R1.A C3L-04787 CM miRNA-Seq tissue_normal CPT0250100008 221118_UNC51-VH00562_156_AAAV2MKHV_CTATAC_S23_L001_R1_001.unaln.bam 440841251 BAM S23_L001_R1 submitted_unaligned CPTAC3 1fef47ef-42e0-4551-8447-31e64fac11a0 61a2265771fc99c34ce5b3c625cd40bf {"aliquot_tag": "ALQ_bb5622b8", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-04791.MethArray.Green.T C3L-04791 HNSCC Methylation_Array tumor CPT0250310006 203271740101_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 9ae6de86-f22b-4b83-af92-fd0ee8b91caf 911410b087e9f2847a9773869b61d22b {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-04791.MethArray.Red.T C3L-04791 HNSCC Methylation_Array tumor CPT0250310006 203271740101_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 f1b5d905-8020-415b-aa6f-3641a035ad6b 2f2e7d205b28d45616259d958daa0d10 {"aliquot_tag": "ALQ_2c468704", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-04791.miRNA-Seq.A.hg38 C3L-04791 HNSCC miRNA-Seq tissue_normal CPT0250330006 b4f3e67a-2b62-4bc7-a7f8-57572bba55c0_mirnaseq_gdc_realn.bam 417687994 BAM harmonized CPTAC3 6e9679ef-40ae-4b96-935e-a619dc91fb90 19f01ec5c69916cd0cadd0560349d488 {"aliquot_tag": "ALQ_5686d464", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -17269,6 +17303,7 @@ C3L-05022.WXS.N C3L-05022 LSCC WXS blood_normal CPT0273480002 CPT0273480002.Whol C3L-05022.WXS.N.hg38 C3L-05022 LSCC WXS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wxs_gdc_realn.bam 51869172741 BAM harmonized CPTAC3 5375bbe6-ca93-44ce-b9b3-581538a8bdc8 e56a7826cf6322fe104670d3f0c115ef {"aliquot_tag": "ALQ_48f30c34", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-05022.WXS.T C3L-05022 LSCC WXS tumor CPT0274960006 CPT0274960006.WholeExome.RP-1303.bam 25934422470 BAM submitted_aligned CPTAC3 6317a479-727c-48bc-a913-dea3d6c7f2fe 5d180ff0ba35aa18e3b4279e8ca552bd {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05022.WXS.T.hg38 C3L-05022 LSCC WXS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wxs_gdc_realn.bam 35376808743 BAM harmonized CPTAC3 2e26f3ad-c58f-4fbd-a872-5310601a5703 9e1a7b7a7c2cb07f67213d8794c34f83 {"aliquot_tag": "ALQ_89975b1c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05027.miRNA-Seq.S24_L001_R1.T C3L-05027 CM miRNA-Seq tumor CPT0262740006 221117_UNC51-VH00562_155_AAAVL2YHV_CTAGCT_S24_L001_R1_001.unaln.bam 345936884 BAM S24_L001_R1 submitted_unaligned CPTAC3 5474b582-eddc-4b1a-9a63-0d08f7a5c970 d2de9a1e5dda2397d2b89e44103b9753 {"aliquot_tag": "ALQ_66275ca8", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05029.RNA-Seq.chimeric.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.chimeric.gdc_realn.bam 135221688 BAM chimeric harmonized CPTAC3 ea91672c-bfdb-4dcf-8745-cd28f0af0249 c99017f7a7f0c045855aed077fcf6c6d {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05029.RNA-Seq.genomic.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.genomic.gdc_realn.bam 8929917342 BAM genomic harmonized CPTAC3 26db7c05-6a10-4610-bd9c-68220ad6c86f 6ffbefd9c6b448c8cfffbc8ebbea085e {"aliquot_tag": "ALQ_73748e25", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05029.RNA-Seq.S69_R1.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R1_001.fastq.gz 4726914591 FASTQ S69_R1 submitted_unaligned CPTAC3 50652094-7875-4c68-bc43-be6814bee6a4 cb914cccb2d5ebaeb9609f22bacb9724 {"aliquot_tag": "ALQ_73748e25", "sample": "S69", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -17386,6 +17421,8 @@ C3L-05172.WXS.N C3L-05172 LSCC WXS blood_normal CPT0297430002 CPT0297430002.Whol C3L-05172.WXS.N.hg38 C3L-05172 LSCC WXS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wxs_gdc_realn.bam 43250332219 BAM harmonized CPTAC3 e6f80465-0ab7-4f1c-98dc-0d8b877fb33e eed869eb256ab36f64518c23465eb243 {"aliquot_tag": "ALQ_dee60b04", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-05172.WXS.T C3L-05172 LSCC WXS tumor CPT0297320006 CPT0297320006.WholeExome.RP-1303.bam 49995416534 BAM submitted_aligned CPTAC3 6a696c6b-46a8-4a0c-a201-c7241e60b918 fdee3c7e879c53cd3d2cd4af927cfff3 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05172.WXS.T.hg38 C3L-05172 LSCC WXS tumor CPT0297320006 0a416131-f6b7-460a-9591-ef8ffe154266_wxs_gdc_realn.bam 67899837993 BAM harmonized CPTAC3 30669ecb-79ab-4a97-b3d4-ef898f0a5757 af83ce125b7764a791bbc00a3dcf3d77 {"aliquot_tag": "ALQ_f9eed615", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05175.miRNA-Seq.S5_L001_R1.A C3L-05175 CM miRNA-Seq tissue_normal CPT0277530008 221109_UNC51-VH00562_149_AAAV5CLHV_AGTTCC_S5_L001_R1_001.unaln.bam 485305421 BAM S5_L001_R1 submitted_unaligned CPTAC3 03b68b36-7e9a-459e-a1bf-1c7dc28b2bff f30a30b6f0248d9def0ff9c883118bae {"aliquot_tag": "ALQ_e0e5238d", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05175.miRNA-Seq.S6_L001_R1.T C3L-05175 CM miRNA-Seq tumor CPT0277520009 221109_UNC51-VH00562_149_AAAV5CLHV_ATCACG_S6_L001_R1_001.unaln.bam 138689084 BAM S6_L001_R1 submitted_unaligned CPTAC3 5452772d-6c71-4f86-9795-fbc479f1ace0 99a7ad4c6b55bed70e27d0b946a2632f {"aliquot_tag": "ALQ_aa823aab", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05176.MethArray.Green.A C3L-05176 LSCC Methylation_Array tissue_normal CPT0297850006 204367400148_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e2abc6d1-7ba9-4657-9504-8f30362a9047 c5b88ee972bb4ed8ba6a2eb2cf5c2106 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-05176.MethArray.Green.T C3L-05176 LSCC Methylation_Array tumor CPT0297810006 204372030127_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ee3fdee9-200d-4b02-ab3d-85cffedd6050 08268624565fb1ef14a19066e8fecbcb {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05176.MethArray.Red.A C3L-05176 LSCC Methylation_Array tissue_normal CPT0297850006 204367400148_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 8fc6a5e3-56fb-496a-9fc0-95ea59747a10 eeb963c24e00461e430c30bcad0ef7d0 {"aliquot_tag": "ALQ_2109fac6", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -17415,6 +17452,8 @@ C3L-05176.WXS.N C3L-05176 LSCC WXS blood_normal CPT0297920002 CPT0297920002.Whol C3L-05176.WXS.N.hg38 C3L-05176 LSCC WXS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wxs_gdc_realn.bam 39721052579 BAM harmonized CPTAC3 588f5cbd-4d7b-41b8-bd6a-7cbd3f4177d9 5f589dc09b4ea2807285ee909d4fada0 {"aliquot_tag": "ALQ_5f18316a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-05176.WXS.T C3L-05176 LSCC WXS tumor CPT0297810006 CPT0297810006.WholeExome.RP-1303.bam 34419652620 BAM submitted_aligned CPTAC3 20c2298a-f94b-4327-9976-4a391e0f87e2 40963ea8b4ae3631e75fb914e8d23955 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05176.WXS.T.hg38 C3L-05176 LSCC WXS tumor CPT0297810006 7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wxs_gdc_realn.bam 48289991580 BAM harmonized CPTAC3 16cd5c8a-bb98-466a-acc8-c3fdc69677ba 998c80614f7ca93786ae0bffa73bf7c5 {"aliquot_tag": "ALQ_d4895c06", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05206.miRNA-Seq.S21_L001_R1.T C3L-05206 CM miRNA-Seq tumor CPT0345930015 221103_UNC51-VH00562_145_AAAVKL3HV_CGATGT_S21_L001_R1_001.unaln.bam 437158449 BAM S21_L001_R1 submitted_unaligned CPTAC3 989268b0-6166-460d-94d2-b9f0ad91ba03 cadcf2695590482af199e4fdfafeeab7 {"aliquot_tag": "ALQ_fee6ac83", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05206.miRNA-Seq.S38_L001_R1.A C3L-05206 CM miRNA-Seq tissue_normal CPT0345970011 221118_UNC51-VH00562_156_AAAV2MKHV_TATAAT_S38_L001_R1_001.unaln.bam 326231319 BAM S38_L001_R1 submitted_unaligned CPTAC3 14f3a114-fcd3-4009-bd51-c8c16eed5340 29e7d0574a632859b7c879b6a785273b {"aliquot_tag": "ALQ_c0bce5a", "sample": "S38", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-05212.MethArray.Green.A C3L-05212 LSCC Methylation_Array tissue_normal CPT0296760006 204367490048_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 18c87ff3-9152-4260-97ba-7245a1f45593 fbcd6e4f54d887a14627effd61e19414 {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-05212.MethArray.Green.T C3L-05212 LSCC Methylation_Array tumor CPT0296710006 204367400148_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 9bba17cc-0dce-4e18-a35a-68972aa975f6 69b7812f5f1cb742ea465116c5ffe250 {"aliquot_tag": "ALQ_83a8e567", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05212.MethArray.Red.A C3L-05212 LSCC Methylation_Array tissue_normal CPT0296760006 204367490048_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 ae7edef1-c1d7-4032-bb46-6c2f9b9a46d5 8cf1c6d0f48b7850b8a6f2b1f47e93ad {"aliquot_tag": "ALQ_31883977", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -17500,6 +17539,9 @@ C3L-05225.WXS.N C3L-05225 LSCC WXS blood_normal CPT0296690002 CPT0296690002.Whol C3L-05225.WXS.N.hg38 C3L-05225 LSCC WXS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wxs_gdc_realn.bam 32473818430 BAM harmonized CPTAC3 19f20d7b-086d-4040-9f9c-dd17e2fe5017 efbebb2966aedd825c30d15513d67e6c {"aliquot_tag": "ALQ_7fe9b91a", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-05225.WXS.T C3L-05225 LSCC WXS tumor CPT0296570006 CPT0296570006.WholeExome.RP-1303.bam 19475882881 BAM submitted_aligned CPTAC3 987e1444-ba3d-41f6-b6c2-ed0e9392416f 20deaa0b8dbf19f272d23fa389b477d3 {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05225.WXS.T.hg38 C3L-05225 LSCC WXS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wxs_gdc_realn.bam 26692348336 BAM harmonized CPTAC3 cff5ad7d-816f-4f8f-b919-f96dbac7cbe2 b500bdf342dad6eafce479c71e67f1ab {"aliquot_tag": "ALQ_4120b1cc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05229.miRNA-Seq.S26_L001_R1.A C3L-05229 CM miRNA-Seq tissue_normal CPT0272520019 221118_UNC51-VH00562_156_AAAV2MKHV_GACGAC_S26_L001_R1_001.unaln.bam 379355333 BAM S26_L001_R1 submitted_unaligned CPTAC3 9a6cdb6c-bcf7-4014-bd25-5a3055b7bc69 81ff96d81c65662e6b5386afae4fceca {"aliquot_tag": "ALQ_e1a1244d", "sample": "S26", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05235.miRNA-Seq.S39_L001_R1.A C3L-05235 CM miRNA-Seq tissue_normal CPT0346150013 221118_UNC51-VH00562_156_AAAV2MKHV_TCATTC_S39_L001_R1_001.unaln.bam 432821209 BAM S39_L001_R1 submitted_unaligned CPTAC3 ae88fc7f-f4b8-4b4f-b985-6d1182cd1bd8 2f3fc8c0937d75795b2665b77666ed89 {"aliquot_tag": "ALQ_457e64e6", "sample": "S39", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05235.miRNA-Seq.S48_L001_R1.T C3L-05235 CM miRNA-Seq tumor CPT0346090009 221103_UNC51-VH00562_145_AAAVKL3HV_TTAGGC_S48_L001_R1_001.unaln.bam 235972339 BAM S48_L001_R1 submitted_unaligned CPTAC3 beb9d76c-03f3-48a0-935f-aadd48f56c45 4d0be3bc3a48382535f23d8b9b2c2faa {"aliquot_tag": "ALQ_b21c821d", "sample": "S48", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05239.MethArray.Green.T C3L-05239 GBM Methylation_Array tumor CPT0346710006 204930640083_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 226f5aee-f475-42e4-97b9-88fa6b51c92f 6889df0f9206dd1e4cf16d995314ad56 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05239.MethArray.Red.T C3L-05239 GBM Methylation_Array tumor CPT0346710006 204930640083_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 22d11f1e-80cd-4521-84c0-8cf623ec19fc 81df0570b493ef831814ea12a6fb2176 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05239.miRNA-Seq.S23_L007_R1.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM S23_L007_R1 submitted_unaligned CPTAC3 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 {"aliquot_tag": "ALQ_9f69f964", "sample": "S23", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -17517,6 +17559,15 @@ C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal CPT0346770002 CPT0346770002.Whole C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM harmonized CPTAC3 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb 194348106658a2114010e8684763c283 {"aliquot_tag": "ALQ_87fbd54c", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3L-05239.WXS.T C3L-05239 GBM WXS tumor CPT0346710006 CPT0346710006.WholeExome.RP-1303.bam 18743445741 BAM submitted_aligned CPTAC3 12ae1706-4063-446f-931a-67559587801f 1578bf468e186202b42f5367283f3647 {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor CPT0346710006 7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM harmonized CPTAC3 73dcd24f-0fde-46b2-a48b-11f402c43c99 c81d319fc4c41491f322ebac125befcf {"aliquot_tag": "ALQ_fd6e4f5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-05259.miRNA-Seq.S18_L001_R1.T C3L-05259 CM miRNA-Seq tumor CPT0340860010 221109_UNC51-VH00562_149_AAAV5CLHV_CATTTT_S18_L001_R1_001.unaln.bam 470942016 BAM S18_L001_R1 submitted_unaligned CPTAC3 94a042ab-d87d-40f1-9a0a-a502baa17886 e46f6b24fbde81a2937b4414aba7fa22 {"aliquot_tag": "ALQ_df082b7e", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05261.miRNA-Seq.S19_L001_R1.T C3L-05261 CM miRNA-Seq tumor CPT0340990010 221109_UNC51-VH00562_149_AAAV5CLHV_CCAACA_S19_L001_R1_001.unaln.bam 180531892 BAM S19_L001_R1 submitted_unaligned CPTAC3 5cd5a011-0a42-41b1-bcd0-5d6c2fae5a7e 5a0a8683c4ef844dd29ca39864fa056c {"aliquot_tag": "ALQ_96046f0a", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05262.miRNA-Seq.S32_L001_R1.T C3L-05262 CM miRNA-Seq tumor CPT0282540014 221109_UNC51-VH00562_149_AAAV5CLHV_GGCTAC_S32_L001_R1_001.unaln.bam 449391530 BAM S32_L001_R1 submitted_unaligned CPTAC3 27a91f17-9cfb-4024-a87c-4ab20b4a6f6d f89f2b70e6873a0fb4db41e513d123a3 {"aliquot_tag": "ALQ_c970bffc", "sample": "S32", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05262.miRNA-Seq.S4_L001_R1.A C3L-05262 CM miRNA-Seq tissue_normal CPT0282580009 221109_UNC51-VH00562_149_AAAV5CLHV_AGTCAA_S4_L001_R1_001.unaln.bam 398216550 BAM S4_L001_R1 submitted_unaligned CPTAC3 3658a193-0526-4428-b8b6-5486b04c1761 923fb310b6ca65dee5c97e98dc648629 {"aliquot_tag": "ALQ_6b2a1f01", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05290.miRNA-Seq.S24_L001_R1.T C3L-05290 CM miRNA-Seq tumor CPT0341190009 221109_UNC51-VH00562_149_AAAV5CLHV_CTAGCT_S24_L001_R1_001.unaln.bam 418659713 BAM S24_L001_R1 submitted_unaligned CPTAC3 1c232799-3d02-472c-a3da-554a57276338 382bcfd5faa6bfb094a215280b8fa66d {"aliquot_tag": "ALQ_bce76f36", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05299.miRNA-Seq.S35_L001_R1.A C3L-05299 CM miRNA-Seq tissue_normal CPT0282220006 221118_UNC51-VH00562_156_AAAV2MKHV_TAATCG_S35_L001_R1_001.unaln.bam 427959318 BAM S35_L001_R1 submitted_unaligned CPTAC3 5814dd9b-3008-45a3-bad1-aca471e365ae 2c24e0809c208669cb230079c7f7519c {"aliquot_tag": "ALQ_ac202a89", "sample": "S35", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05299.miRNA-Seq.S41_L001_R1.T C3L-05299 CM miRNA-Seq tumor CPT0282200013 221109_UNC51-VH00562_149_AAAV5CLHV_TAGCTT_S41_L001_R1_001.unaln.bam 507675990 BAM S41_L001_R1 submitted_unaligned CPTAC3 3666b93c-2628-4a75-ab84-f1855560d5ad 4b040ab2f2465079e56813323b4e0134 {"aliquot_tag": "ALQ_bf91bc27", "sample": "S41", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05302.miRNA-Seq.S27_L001_R1.A C3L-05302 CM miRNA-Seq tissue_normal CPT0282050009 221109_UNC51-VH00562_149_AAAV5CLHV_CTTGTA_S27_L001_R1_001.unaln.bam 215674097 BAM S27_L001_R1 submitted_unaligned CPTAC3 877e7e94-036e-4f89-8d8b-dc59a005e21f 72942a7cb7b50cb7fe24a741a8aeec4b {"aliquot_tag": "ALQ_c3774a03", "sample": "S27", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05302.miRNA-Seq.S30_L001_R1.T C3L-05302 CM miRNA-Seq tumor CPT0281990013 221109_UNC51-VH00562_149_AAAV5CLHV_GATCAG_S30_L001_R1_001.unaln.bam 451892642 BAM S30_L001_R1 submitted_unaligned CPTAC3 48eb0461-dc66-4225-8f1e-6a36564eb2d1 ad4e5b93cdf4934f4d19111a44686433 {"aliquot_tag": "ALQ_e9ae3408", "sample": "S30", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05313.MethArray.Green.Tbm C3L-05313 AML Methylation_Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9e98c5b1-2086-4e5a-8b12-30aafe032714 a813f48a25061f5701bb57d02dde6ea8 {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-05313.MethArray.Red.Tbm C3L-05313 AML Methylation_Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 f5035698-fc64-4ca3-b505-56bed0caa3a2 875dc99237001389f8a6b13cb0459a0b {"aliquot_tag": "ALQ_b4ee9a66", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-05313.miRNA-Seq.S31_L007_R1.Tbm C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGAAG_S31_L007_R1_001.unaln.bam 405396432 BAM S31_L007_R1 submitted_unaligned CPTAC3 ec6361e3-7777-40c7-8e73-38739400b11a 9f0e2b6ad6e42f549b2c3911a0b3dd36 {"aliquot_tag": "ALQ_898eb3d6", "sample": "S31", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "released"} @@ -17724,6 +17775,8 @@ C3L-05338.WXS.Nbc C3L-05338 AML WXS buccal_normal CPT0303760001 CPT0303760001.Wh C3L-05338.WXS.Nbc.hg38 C3L-05338 AML WXS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wxs_gdc_realn.bam 40043987846 BAM harmonized CPTAC3 1f8df55f-a261-4316-bb19-972442496f86 34820f7dfc28a42ac7e376c5d2c651ff {"aliquot_tag": "ALQ_f5e08c1b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-05338.WXS.Tbm C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeExome.RP-1303.bam 30870352146 BAM submitted_aligned CPTAC3 8a102a76-2f4c-4ca6-a6af-1a4793b1dda9 01ce2357dc02c7e0742c1c07c5781597 {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-05338.WXS.Tbm.hg38 C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wxs_gdc_realn.bam 43084082849 BAM harmonized CPTAC3 0f344126-30a6-4718-bc90-4e1de755d276 2060dd6d4aec44e3ff2b8d5a20dfc58a {"aliquot_tag": "ALQ_1885b065", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05362.miRNA-Seq.S14_L001_R1.A C3L-05362 CM miRNA-Seq tissue_normal CPT0341360006 221109_UNC51-VH00562_149_AAAV5CLHV_CACTCA_S14_L001_R1_001.unaln.bam 401468264 BAM S14_L001_R1 submitted_unaligned CPTAC3 ee7c3da2-0fb1-4e71-b499-557a8898f7fa 220fffdba6e1f9b72f310ef825e02801 {"aliquot_tag": "ALQ_e3c0447d", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05362.miRNA-Seq.S25_L001_R1.T C3L-05362 CM miRNA-Seq tumor CPT0341310009 221109_UNC51-VH00562_149_AAAV5CLHV_CTATAC_S25_L001_R1_001.unaln.bam 302265084 BAM S25_L001_R1 submitted_unaligned CPTAC3 75a6ca02-401d-40a1-b4dd-95eeff498681 68e91e68b75bbfbc1761487a4213161a {"aliquot_tag": "ALQ_c15f85fc", "sample": "S25", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05369.MethArray.Green.A C3L-05369 LSCC Methylation_Array tissue_normal CPT0294480006 204372030015_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 f5a79f0d-1a10-43d8-963c-685f261d9d66 b9796189bbec29d0836d54392b69c525 {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-05369.MethArray.Green.T C3L-05369 LSCC Methylation_Array tumor CPT0294450006 204367470131_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fcfa9bd6-869d-4965-a42c-7ad6617544de 55e96f5e8a2f0470c1e1ffcd94f6243a {"aliquot_tag": "ALQ_67232020", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05369.MethArray.Red.A C3L-05369 LSCC Methylation_Array tissue_normal CPT0294480006 204372030015_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 e2441776-a26a-483c-8d57-aebbd971647f 5896f469e52418e090c9bc7232d3c67b {"aliquot_tag": "ALQ_9fb3e491", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -18182,6 +18235,12 @@ C3L-05481.WXS.N C3L-05481 GBM WXS blood_normal CPT0402530002 CPT0402530002.Whole C3L-05481.WXS.N.hg38 C3L-05481 GBM WXS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wxs_gdc_realn.bam 35734641239 BAM harmonized CPTAC3 c951e25c-569b-4330-9f20-c9cf57eb8291 63a915287afce5cc7c954209ccb0e937 {"aliquot_tag": "ALQ_2bd795a7", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3L-05481.WXS.T C3L-05481 GBM WXS tumor CPT0406370007 CPT0406370007.WholeExome.RP-1303.bam 22329938537 BAM submitted_aligned CPTAC3 3d539fca-80f3-44fa-8984-c29a9b1eb26f fc5df7ed9642071d1df3a6696dbd1ecc {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05481.WXS.T.hg38 C3L-05481 GBM WXS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wxs_gdc_realn.bam 30699521739 BAM harmonized CPTAC3 e6b33d67-a8b0-42ce-8994-6e3e5e782da4 8414079d0f7b780a474c3e6ddc35fd21 {"aliquot_tag": "ALQ_8c2b00e6", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-05517.miRNA-Seq.S3_L001_R1.T C3L-05517 CM miRNA-Seq tumor CPT0287530009 221109_UNC51-VH00562_149_AAAV5CLHV_ACTTGA_S3_L001_R1_001.unaln.bam 317194361 BAM S3_L001_R1 submitted_unaligned CPTAC3 f9f255ca-34d7-4958-a974-72af26c8e9be 0e53e472d70b96bb0ad28d894538e0a1 {"aliquot_tag": "ALQ_4ec201b7", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05518.miRNA-Seq.S10_L001_R1.A C3L-05518 CM miRNA-Seq tissue_normal CPT0335030008 221109_UNC51-VH00562_149_AAAV5CLHV_CAAAAG_S10_L001_R1_001.unaln.bam 464273722 BAM S10_L001_R1 submitted_unaligned CPTAC3 1796f22c-7e95-44a3-ab53-7cfd1b108e74 7e1db314b5d03f53204653676749b57e {"aliquot_tag": "ALQ_b486b9ae", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05518.miRNA-Seq.S31_L001_R1.T C3L-05518 CM miRNA-Seq tumor CPT0335020013 221103_UNC51-VH00562_145_AAAVKL3HV_GCCAAT_S31_L001_R1_001.unaln.bam 523916715 BAM S31_L001_R1 submitted_unaligned CPTAC3 c32b8ba8-3eb4-4b91-badd-dca89e6f311c 56745e50b7dcaef06c7feebfd3ea977b {"aliquot_tag": "ALQ_72f78d7", "sample": "S31", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05527.miRNA-Seq.S31_L001_R1.T C3L-05527 CM miRNA-Seq tumor CPT0286650009 221109_UNC51-VH00562_149_AAAV5CLHV_GCCAAT_S31_L001_R1_001.unaln.bam 129069501 BAM S31_L001_R1 submitted_unaligned CPTAC3 2fc62f73-2f92-4b9c-b577-401b64f52385 4c24986053ff73d9e22e9505db31ba85 {"aliquot_tag": "ALQ_e1618d0d", "sample": "S31", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05556.miRNA-Seq.S33_L001_R1.A C3L-05556 CM miRNA-Seq tissue_normal CPT0373060016 221103_UNC51-VH00562_145_AAAVKL3HV_GGTAGC_S33_L001_R1_001.unaln.bam 441089115 BAM S33_L001_R1 submitted_unaligned CPTAC3 76560518-d755-4f1f-a395-869978796fbe 7fb547a83ffd3be015637921d721b5c9 {"aliquot_tag": "ALQ_655f1158", "sample": "S33", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05556.miRNA-Seq.S44_L001_R1.T C3L-05556 CM miRNA-Seq tumor CPT0373460009 221109_UNC51-VH00562_149_AAAV5CLHV_TCCCGA_S44_L001_R1_001.unaln.bam 412024272 BAM S44_L001_R1 submitted_unaligned CPTAC3 26f345b4-6e46-4a89-a038-40c497e84142 af70eba655f7d847309ecac381bb3984 {"aliquot_tag": "ALQ_776a7f9e", "sample": "S44", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05571.MethArray.Green.T C3L-05571 UCEC Methylation_Array tumor CPT0275270009 204372030024_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 94b106fb-b0c9-4e73-917f-f9792591e6ec d6ed0930b2680bf5233e71cd3ebd4d1e {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05571.MethArray.Red.T C3L-05571 UCEC Methylation_Array tumor CPT0275270009 204372030024_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 7ef175a4-38e0-46ab-8634-93b3c4926cbc 3e030b20324cb1f88c2a3750d2421bdb {"aliquot_tag": "ALQ_e8f8944a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05571.miRNA-Seq.S41_L008_R1.T C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L008_R1_001.unaln.bam 252365298 BAM S41_L008_R1 submitted_unaligned CPTAC3 68c3bd9e-8acb-4f9f-976e-f7f1bf8ac0ae 1c23c36fb9b06a8aa42e4c82cf7ed060 {"aliquot_tag": "ALQ_784789db", "sample": "S41", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -18209,6 +18268,10 @@ C3L-05574.RNA-Seq.genomic.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c C3L-05574.RNA-Seq.S55_R1.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ S55_R1 submitted_unaligned CPTAC3 d22359eb-1963-4331-ac8e-5bfe21da379a 5a5189070c658feb4331aa6946b85df3 {"aliquot_tag": "ALQ_c62ceb9f", "sample": "S55", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05574.RNA-Seq.S55_R2.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ S55_R2 submitted_unaligned CPTAC3 0824ef96-da24-4447-b004-870d0a8f0e09 0affd61dd280a8e64422140fa56c3111 {"aliquot_tag": "ALQ_c62ceb9f", "sample": "S55", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05574.RNA-Seq.transcriptome.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.transcriptome.gdc_realn.bam 8225640220 BAM transcriptome harmonized CPTAC3 314721fd-f0f0-48d0-abec-cd2871e4d2e3 133fbd299be3ec224d9e39901eae52a6 {"aliquot_tag": "ALQ_c62ceb9f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05598.miRNA-Seq.S7_L001_R1.T C3L-05598 CM miRNA-Seq tumor CPT0346280009 221109_UNC51-VH00562_149_AAAV5CLHV_ATGAGC_S7_L001_R1_001.unaln.bam 401016223 BAM S7_L001_R1 submitted_unaligned CPTAC3 d26facb8-d5aa-46bd-8c9d-fa3a9e534137 6620f5d2182b10992fca4fd2baca951d {"aliquot_tag": "ALQ_c2b40aa6", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05638.miRNA-Seq.S9_L001_R1.T C3L-05638 CM miRNA-Seq tumor CPT0346390009 221109_UNC51-VH00562_149_AAAV5CLHV_ATTCCT_S9_L001_R1_001.unaln.bam 276067927 BAM S9_L001_R1 submitted_unaligned CPTAC3 1a54ead1-bcde-4927-97e9-9180cbee7319 283af6fd0eef4d6aa142c5a978c32195 {"aliquot_tag": "ALQ_3488f0b3", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05644.miRNA-Seq.S13_L001_R1.A C3L-05644 CM miRNA-Seq tissue_normal CPT0346470006 221109_UNC51-VH00562_149_AAAV5CLHV_CACGAT_S13_L001_R1_001.unaln.bam 487874329 BAM S13_L001_R1 submitted_unaligned CPTAC3 da960cf2-fd21-46bb-98a8-611bf8394bd3 d5561b8f73dd5c1d8b46a62df807d3f1 {"aliquot_tag": "ALQ_60263fb", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05644.miRNA-Seq.S16_L001_R1.T C3L-05644 CM miRNA-Seq tumor CPT0346460009 221109_UNC51-VH00562_149_AAAV5CLHV_CAGGCG_S16_L001_R1_001.unaln.bam 453897197 BAM S16_L001_R1 submitted_unaligned CPTAC3 b8a800b2-e87d-4bf9-ad08-5aca58eb5dec 94aab566e9089c80a5be26ceca7090c7 {"aliquot_tag": "ALQ_abdd57da", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05678.MethArray.Green.Tpb C3L-05678 AML Methylation_Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e984db26-9ec3-4b95-8958-f3cb8df408e1 80c99d6c79ae49ac209c379908874e17 {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-05678.MethArray.Red.Tpb C3L-05678 AML Methylation_Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8466f3f-4fb5-4e14-aa20-4861d84fd222 0e36cd84b9481a8ea5e2544006c2763c {"aliquot_tag": "ALQ_fbbdf46c", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-05678.miRNA-Seq.S18_L001_R1.Tpb C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L001_R1_001.unaln.bam 274806128 BAM S18_L001_R1 submitted_unaligned CPTAC3 b1136002-c557-45e4-81a2-9faf732a1046 9dcb236863d2102319af1a2bafa8c6cc {"aliquot_tag": "ALQ_3df145b8", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} @@ -18274,6 +18337,8 @@ C3L-05763.RNA-Seq.genomic.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a C3L-05763.RNA-Seq.S21_R1.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ S21_R1 submitted_unaligned CPTAC3 facce343-1069-418e-a147-21ce454ae89b a1b39d30ca817f339e1fcb2113f64429 {"aliquot_tag": "ALQ_ee5a8d59", "sample": "S21", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05763.RNA-Seq.S21_R2.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ S21_R2 submitted_unaligned CPTAC3 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 6c715b3ac94f59c21451b868c01d0261 {"aliquot_tag": "ALQ_ee5a8d59", "sample": "S21", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05763.RNA-Seq.transcriptome.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.transcriptome.gdc_realn.bam 8110124991 BAM transcriptome harmonized CPTAC3 9cd4cf0f-a587-405e-8105-5c46858d2d22 3811fcb355f611e0a2cf7b1d9dbfeef1 {"aliquot_tag": "ALQ_ee5a8d59", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-05781.miRNA-Seq.S11_L001_R1.A C3L-05781 CM miRNA-Seq tissue_normal CPT0306100008 221109_UNC51-VH00562_149_AAAV5CLHV_CAACTA_S11_L001_R1_001.unaln.bam 471447603 BAM S11_L001_R1 submitted_unaligned CPTAC3 6f941215-d45d-486d-9111-778c7c0c1e3b 82913924597b7cb3c86a9b2f1bb31b8b {"aliquot_tag": "ALQ_871d0da5", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-05781.miRNA-Seq.S38_L001_R1.T C3L-05781 CM miRNA-Seq tumor CPT0306060009 221109_UNC51-VH00562_149_AAAV5CLHV_GTTTCG_S38_L001_R1_001.unaln.bam 319199417 BAM S38_L001_R1 submitted_unaligned CPTAC3 b5261baa-29ab-4697-984f-b74e8dbe0c96 bba9b93261cb40216636ee08780805f4 {"aliquot_tag": "ALQ_b4061b36", "sample": "S38", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05811.MethArray.Green.Tpb C3L-05811 AML Methylation_Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 5c8821fb-9334-43c9-a149-fa61d27e72a0 99d1955cb3ca819325195995b7457f1d {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-05811.MethArray.Red.Tpb C3L-05811 AML Methylation_Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 00221a20-250a-4836-81a2-a451202e0711 3699403a3153f331c7199aabe4ba8bc9 {"aliquot_tag": "ALQ_4b51d5d2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-05811.miRNA-Seq.S32_L002_R1.Tpb C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTTGTA_S32_L002_R1_001.unaln.bam 163702318 BAM S32_L002_R1 submitted_unaligned CPTAC3 19912d4a-0364-400f-96dc-c43cf3233c4d d2d3e9ddc388beefae7d4e70fafcfe2f {"aliquot_tag": "ALQ_319186b2", "sample": "S32", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} @@ -18359,6 +18424,7 @@ C3L-05819.WXS.Nbc C3L-05819 AML WXS buccal_normal CPT0341870002 CPT0341870002.Wh C3L-05819.WXS.Nbc.hg38 C3L-05819 AML WXS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wxs_gdc_realn.bam 34395335551 BAM harmonized CPTAC3 08a8f112-a896-4435-bec0-4f7c3081d5c3 dfd5017f4273c810ea93f63b328c376c {"aliquot_tag": "ALQ_b30a5917", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-05819.WXS.Tpb C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeExome.RP-1303.bam 23019547119 BAM submitted_aligned CPTAC3 43ffbea2-a345-48ac-9b95-8105e9d69436 f0038c5a840d765dd3faeaed879ec71c {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-05819.WXS.Tpb.hg38 C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wxs_gdc_realn.bam 32072259434 BAM harmonized CPTAC3 09d2c250-7d1b-4ce1-b341-f22b344cc4ec f4165b21c964967c75dc31859b3a1bf5 {"aliquot_tag": "ALQ_ca7656a2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-05839.miRNA-Seq.S47_L001_R1.T C3L-05839 CM miRNA-Seq tumor CPT0346880010 221103_UNC51-VH00562_145_AAAVKL3HV_TGACCA_S47_L001_R1_001.unaln.bam 309741052 BAM S47_L001_R1 submitted_unaligned CPTAC3 baefe460-2a03-4ee7-929e-fe70691cfc52 7e1043253a5cddb03994490fb3310d89 {"aliquot_tag": "ALQ_3e8a025", "sample": "S47", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05848.MethArray.Green.T C3L-05848 UCEC Methylation_Array tumor CPT0288750009 204372030106_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0a065a8b-c02c-4b0b-b6a3-4e251a8c4ad4 9558bde51f725c60484b03d5cdb0df62 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05848.MethArray.Red.T C3L-05848 UCEC Methylation_Array tumor CPT0288750009 204372030106_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 b4c3d582-0793-4f9b-9ec4-897dba398e85 03be4c8aed9fac92cb60fb38ecf9d196 {"aliquot_tag": "ALQ_7a0225f5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-05848.miRNA-Seq.S42_L008_R1.T C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L008_R1_001.unaln.bam 194402343 BAM S42_L008_R1 submitted_unaligned CPTAC3 eb251cc7-d9e3-4755-b1d5-f71ef8dbde73 1affa8e420f5b522ac6a6e461f39cff8 {"aliquot_tag": "ALQ_eabd3864", "sample": "S42", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -18766,6 +18832,10 @@ C3L-05908.WXS.Nbc C3L-05908 AML WXS buccal_normal CPT0326940002 CPT0326940002.Wh C3L-05908.WXS.Nbc.hg38 C3L-05908 AML WXS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wxs_gdc_realn.bam 35730190416 BAM harmonized CPTAC3 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c 98f60c535c7b069b5746547e9a385bd0 {"aliquot_tag": "ALQ_3c3ec76b", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-05908.WXS.Tbm C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeExome.RP-1303.bam 21302425000 BAM submitted_aligned CPTAC3 ef626016-61b3-49ec-b3cb-5be53dc4ebe7 913f591a2a0c30d7778813b189ae9377 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-05908.WXS.Tbm.hg38 C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wxs_gdc_realn.bam 29849365051 BAM harmonized CPTAC3 24bc77be-7a63-4942-a438-31028cc4fea9 89a4c09d505f0ce5d0d7eb62879fe6b6 {"aliquot_tag": "ALQ_c9be61ab", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-05987.miRNA-Seq.S3_L001_R1.T C3L-05987 CM miRNA-Seq tumor CPT0360850006 221103_UNC51-VH00562_145_AAAVKL3HV_ACTTGA_S3_L001_R1_001.unaln.bam 459047769 BAM S3_L001_R1 submitted_unaligned CPTAC3 2c37d594-5534-497a-b585-25735378f7c8 09a7fad3fc28a2e8e39da75b273e2fed {"aliquot_tag": "ALQ_2af5c2a7", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06019.miRNA-Seq.S1_L001_R1.T C3L-06019 CM miRNA-Seq tumor CPT0359050009 221103_UNC51-VH00562_145_AAAVKL3HV_ACAGTG_S1_L001_R1_001.unaln.bam 465825971 BAM S1_L001_R1 submitted_unaligned CPTAC3 32c8c748-5097-4f37-897d-15631285dd3f 814dc7fec2f81f0cecda27eb8bf4e34f {"aliquot_tag": "ALQ_4d0e1f6b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06023.miRNA-Seq.S38_L001_R1.T C3L-06023 CM miRNA-Seq tumor CPT0361750013 221103_UNC51-VH00562_145_AAAVKL3HV_GTTTCG_S38_L001_R1_001.unaln.bam 440235886 BAM S38_L001_R1 submitted_unaligned CPTAC3 ef3122c2-81a4-46c0-ba7d-1b1e4c0553cc f916e5321fc1170446fc38c4d284d822 {"aliquot_tag": "ALQ_14a5be08", "sample": "S38", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06025.miRNA-Seq.S5_L001_R1.T C3L-06025 CM miRNA-Seq tumor CPT0361880006 221103_UNC51-VH00562_145_AAAVKL3HV_AGTTCC_S5_L001_R1_001.unaln.bam 481480539 BAM S5_L001_R1 submitted_unaligned CPTAC3 b325e1f4-aa5d-4feb-9c50-b622724d4a21 4947336234f44e58c838539457a5bf6c {"aliquot_tag": "ALQ_74120da2", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06061.MethArray.Green.Tbm C3L-06061 AML Methylation_Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4d05bfb3-9c0d-4766-98f1-9d1f86cda575 6eb3165b1f380d36d2a73ce24a95c68f {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06061.MethArray.Red.Tbm C3L-06061 AML Methylation_Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 197ccda7-f444-4f02-bdc3-ce18ae6c4889 c6ba9d606744484d8c0265333d156fac {"aliquot_tag": "ALQ_e4d9ebb8", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06061.miRNA-Seq.S53_L008_R1.Tbm C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 210331_UNC31-K00269_0297_AHKCFKBBXY_GAGTGG_S53_L008_R1_001.unaln.bam 285259644 BAM S53_L008_R1 submitted_unaligned CPTAC3 cfe69a28-e93d-4b5f-96e4-cdecc79dede1 f72e798d4b3ce098745ec927b1899c98 {"aliquot_tag": "ALQ_56f937a8", "sample": "S53", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} @@ -19045,6 +19115,12 @@ C3L-06090.WXS.Nbc C3L-06090 AML WXS buccal_normal CPT0356940003 CPT0356940003.Wh C3L-06090.WXS.Nbc.hg38 C3L-06090 AML WXS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wxs_gdc_realn.bam 28827956277 BAM harmonized CPTAC3 71ab0872-716e-451f-8bcb-46b1805592cf 69fb1e4720cdf5fddca3ed59459730fb {"aliquot_tag": "ALQ_41fcfee4", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-06090.WXS.Tpb C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeExome.RP-1303.bam 22241932064 BAM submitted_aligned CPTAC3 9cb34e01-5744-40fd-89eb-b5fa99edc1cc e6cbec164fd2728e06fc9e49b4e4ac43 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-06090.WXS.Tpb.hg38 C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wxs_gdc_realn.bam 30681620462 BAM harmonized CPTAC3 b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf 68c7f68b14d18aeee53c7fd872a5cc48 {"aliquot_tag": "ALQ_c37b68b2", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-06091.miRNA-Seq.S32_L001_R1.T C3L-06091 CM miRNA-Seq tumor CPT0361150006 221103_UNC51-VH00562_145_AAAVKL3HV_GGCTAC_S32_L001_R1_001.unaln.bam 228906154 BAM S32_L001_R1 submitted_unaligned CPTAC3 3138e45a-6860-41ee-87db-e1be53fc59d9 3726887d46a99502aff651e3b21ca261 {"aliquot_tag": "ALQ_ab8d98db", "sample": "S32", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06110.miRNA-Seq.S20_L001_R1.T C3L-06110 CM miRNA-Seq tumor CPT0319740009 221109_UNC51-VH00562_149_AAAV5CLHV_CCGTCC_S20_L001_R1_001.unaln.bam 289789564 BAM S20_L001_R1 submitted_unaligned CPTAC3 980e07b1-219b-4a3e-a43f-b999409ee0d7 2439bcbb02817853139055777c1eb92a {"aliquot_tag": "ALQ_e9210899", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06113.miRNA-Seq.S34_L001_R1.T C3L-06113 CM miRNA-Seq tumor CPT0319820009 221109_UNC51-VH00562_149_AAAV5CLHV_GTAGAG_S34_L001_R1_001.unaln.bam 392874734 BAM S34_L001_R1 submitted_unaligned CPTAC3 e73ab17c-3b46-4709-a5aa-dae19d4a689b 0f2d09ed895bd60b3a6f3af5e86d8412 {"aliquot_tag": "ALQ_97374fec", "sample": "S34", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06113.miRNA-Seq.S42_L001_R1.A C3L-06113 CM miRNA-Seq tissue_normal CPT0319830010 221109_UNC51-VH00562_149_AAAV5CLHV_TATAAT_S42_L001_R1_001.unaln.bam 368333468 BAM S42_L001_R1 submitted_unaligned CPTAC3 5cf5e4db-7210-4a0c-a816-cb39590c116b e1e535b10ab03948e21353fe43197182 {"aliquot_tag": "ALQ_ca90efb9", "sample": "S42", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06115.miRNA-Seq.S26_L001_R1.T C3L-06115 CM miRNA-Seq tumor CPT0334850009 221109_UNC51-VH00562_149_AAAV5CLHV_CTCAGA_S26_L001_R1_001.unaln.bam 466445926 BAM S26_L001_R1 submitted_unaligned CPTAC3 ecb5cea3-f1be-46b7-ae78-74b58012014d a823f4506c4000a7f8716648e69fe264 {"aliquot_tag": "ALQ_6e5f541", "sample": "S26", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06115.miRNA-Seq.S43_L001_R1.A C3L-06115 CM miRNA-Seq tissue_normal CPT0334900010 221109_UNC51-VH00562_149_AAAV5CLHV_TCATTC_S43_L001_R1_001.unaln.bam 377522926 BAM S43_L001_R1 submitted_unaligned CPTAC3 a340906b-8e03-4e15-ac1f-e9aca0127e16 2fce4f662f162e16534197de565b5bfc {"aliquot_tag": "ALQ_659e2071", "sample": "S43", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-06166.RNA-Seq.chimeric.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.chimeric.gdc_realn.bam 88861301 BAM chimeric harmonized CPTAC3 c54cd277-680a-4d3e-9c42-1dd8e75693d6 da326df8209c8b5b6acc373370b2134a {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06166.RNA-Seq.genomic.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.genomic.gdc_realn.bam 5519855623 BAM genomic harmonized CPTAC3 e508fdcd-20bd-439c-b659-e469956ddf50 dc428186305cb0ccbfa22eb0b55a9c69 {"aliquot_tag": "ALQ_b3016e19", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06166.RNA-Seq.S37_R1.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ S37_R1 submitted_unaligned CPTAC3 e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 94fb955ed112911b77c7218cffdd52a1 {"aliquot_tag": "ALQ_b3016e19", "sample": "S37", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -19078,6 +19154,15 @@ C3L-06169.WXS.N C3L-06169 LSCC WXS blood_normal CPT0294750002 CPT0294750002.Whol C3L-06169.WXS.N.hg38 C3L-06169 LSCC WXS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wxs_gdc_realn.bam 36419327281 BAM harmonized CPTAC3 e4516e9f-55ec-4d26-95da-94432a652dd6 bb7d77083bd16a530863ad73f24f685f {"aliquot_tag": "ALQ_e6da9697", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3L-06169.WXS.T C3L-06169 LSCC WXS tumor CPT0294630006 CPT0294630006.WholeExome.RP-1303.bam 19082996953 BAM submitted_aligned CPTAC3 57f91759-b383-4792-971a-3402dfe2f5c4 71efa1f248b1785073c7aa2f2fea604d {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06169.WXS.T.hg38 C3L-06169 LSCC WXS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wxs_gdc_realn.bam 26741225402 BAM harmonized CPTAC3 f1cc54af-4370-4abb-82c2-d0d4dc3f7591 6b4e5fc677d27ac25cc5b86a8223eb0e {"aliquot_tag": "ALQ_a5ab748b", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06195.miRNA-Seq.S13_L001_R1.T C3L-06195 CM miRNA-Seq tumor CPT0424530006 221103_UNC51-VH00562_145_AAAVKL3HV_CACGAT_S13_L001_R1_001.unaln.bam 364461877 BAM S13_L001_R1 submitted_unaligned CPTAC3 716d87d0-60ee-4cd6-a7b8-67606523daaa 9fc23ce71a548e78e176eb539096e987 {"aliquot_tag": "ALQ_d4f63f9", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06206.miRNA-Seq.S4_L001_R1.T C3L-06206 CM miRNA-Seq tumor CPT0424700009 221118_UNC51-VH00562_156_AAAV2MKHV_ATCACG_S4_L001_R1_001.unaln.bam 232152638 BAM S4_L001_R1 submitted_unaligned CPTAC3 e239ea68-2aae-4941-8ceb-bf5d3634e410 6a135a89baf871fc9bb50332828352bf {"aliquot_tag": "ALQ_9798a5b3", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06207.miRNA-Seq.S37_L001_R1.T C3L-06207 CM miRNA-Seq tumor CPT0424840009 221118_UNC51-VH00562_156_AAAV2MKHV_TAGCTT_S37_L001_R1_001.unaln.bam 375598065 BAM S37_L001_R1 submitted_unaligned CPTAC3 ac508092-6d6f-4c02-a74a-e4bb6a3041b6 31432a603d1ee669bb7107e0e0013ab9 {"aliquot_tag": "ALQ_934eb1a6", "sample": "S37", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06299.miRNA-Seq.S35_L001_R1.T C3L-06299 CM miRNA-Seq tumor CPT0362960006 221103_UNC51-VH00562_145_AAAVKL3HV_GTCCGC_S35_L001_R1_001.unaln.bam 236808718 BAM S35_L001_R1 submitted_unaligned CPTAC3 5fe118d8-3c95-4efe-a297-2c67b8566841 5aaa117516a4be07b8f77f259d7eaa9d {"aliquot_tag": "ALQ_31967afb", "sample": "S35", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06311.miRNA-Seq.S29_L001_R1.T C3L-06311 CM miRNA-Seq tumor CPT0363210013 221103_UNC51-VH00562_145_AAAVKL3HV_GAGTGG_S29_L001_R1_001.unaln.bam 399482626 BAM S29_L001_R1 submitted_unaligned CPTAC3 59d17041-f5d6-4dac-a89a-2b971137060d d8ecc763ce7514a9b55305d0b3169ece {"aliquot_tag": "ALQ_26779852", "sample": "S29", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06333.miRNA-Seq.S8_L001_R1.T C3L-06333 CM miRNA-Seq tumor CPT0362100006 221103_UNC51-VH00562_145_AAAVKL3HV_ATGTCA_S8_L001_R1_001.unaln.bam 452691276 BAM S8_L001_R1 submitted_unaligned CPTAC3 43edd9ad-6727-4064-a85b-196ee2d270e4 24fd8fcf8d4557505717d9b824474a1f {"aliquot_tag": "ALQ_52850d36", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06338.miRNA-Seq.S41_L001_R1.T C3L-06338 CM miRNA-Seq tumor CPT0363410006 221103_UNC51-VH00562_145_AAAVKL3HV_TAGCTT_S41_L001_R1_001.unaln.bam 404144806 BAM S41_L001_R1 submitted_unaligned CPTAC3 47194d5c-9287-453c-a2e7-a2b15d0f9368 a2dce896f5a05a5bb04ff9337c42fed8 {"aliquot_tag": "ALQ_995fbe81", "sample": "S41", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06339.miRNA-Seq.S34_L001_R1.T C3L-06339 CM miRNA-Seq tumor CPT0362880006 221103_UNC51-VH00562_145_AAAVKL3HV_GTAGAG_S34_L001_R1_001.unaln.bam 398023402 BAM S34_L001_R1 submitted_unaligned CPTAC3 d99917b7-93b9-4674-b2ee-fd20bb86d74c 0080d9967118876d50ff45013a597291 {"aliquot_tag": "ALQ_45fa173f", "sample": "S34", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06349.miRNA-Seq.S20_L001_R1.T C3L-06349 CM miRNA-Seq tumor CPT0362770006 221103_UNC51-VH00562_145_AAAVKL3HV_CCGTCC_S20_L001_R1_001.unaln.bam 542279329 BAM S20_L001_R1 submitted_unaligned CPTAC3 1395328d-5488-4a87-ad62-b08716a5f469 e262417fb7b85189b2cf06f9774317e5 {"aliquot_tag": "ALQ_36fc323b", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06352.MethArray.Green.Tpb C3L-06352 AML Methylation_Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d1c7158-0399-487d-b0c4-1ffee98a8a69 055d537c5585acfbc599cdaef8780f3a {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-06352.MethArray.Red.Tpb C3L-06352 AML Methylation_Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 49fca346-5913-4a2f-9a98-7bd5933f9003 3c4e93258408c0184ef883170f4f7722 {"aliquot_tag": "ALQ_6ad0fcd9", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-06352.miRNA-Seq.S16_L001_R1.Tpb C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L001_R1_001.unaln.bam 205706771 BAM S16_L001_R1 submitted_unaligned CPTAC3 d956c69e-9c39-4a59-bba7-07646578e580 8d85195c2d541157f78c189911be2061 {"aliquot_tag": "ALQ_57b0d569", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} @@ -19243,6 +19328,14 @@ C3L-06386.WXS.Nbc C3L-06386 AML WXS buccal_normal CPT0410880001 CPT0410880001.Wh C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal CPT0410880001 c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM harmonized CPTAC3 27966373-38a4-4697-8eda-28539d19e5c6 1727d000f969394e9d9037f868a7d107 {"aliquot_tag": "ALQ_22a5f765", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-06386.WXS.Tbm C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeExome.RP-1303.bam 30377003817 BAM submitted_aligned CPTAC3 6d231bd0-0b90-45fb-be2e-c250cb554e7c 75c64f3b29c3ec79cd7a50bd96633565 {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06386.WXS.Tbm.hg38 C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wxs_gdc_realn.bam 42237742138 BAM harmonized CPTAC3 73f8f70a-98d4-4df8-89f2-596e281d1dc7 36e60a84e228d0dfe7cc5f2222e85c3e {"aliquot_tag": "ALQ_7de0170b", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-06395.miRNA-Seq.S36_L001_R1.T C3L-06395 CM miRNA-Seq tumor CPT0363100006 221103_UNC51-VH00562_145_AAAVKL3HV_GTGAAA_S36_L001_R1_001.unaln.bam 478449339 BAM S36_L001_R1 submitted_unaligned CPTAC3 284a5cc0-a3ec-4584-87ca-419f1b61660f c31b50c597860a9a1ae0e235acc7d01d {"aliquot_tag": "ALQ_f4f20682", "sample": "S36", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06424.miRNA-Seq.S28_L001_R1.T C3L-06424 CM miRNA-Seq tumor CPT0335090009 221109_UNC51-VH00562_149_AAAV5CLHV_GACGAC_S28_L001_R1_001.unaln.bam 377422238 BAM S28_L001_R1 submitted_unaligned CPTAC3 4d1f71d7-3b66-486e-ae07-519987490a7c 472200df117c25925057b1e7c630c590 {"aliquot_tag": "ALQ_89319199", "sample": "S28", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06424.miRNA-Seq.S36_L001_R1.A C3L-06424 CM miRNA-Seq tissue_normal CPT0335120010 221118_UNC51-VH00562_156_AAAV2MKHV_TACAGC_S36_L001_R1_001.unaln.bam 448611796 BAM S36_L001_R1 submitted_unaligned CPTAC3 b1d39cb6-069d-4631-837c-6c01a9b86fc6 eeb0f23e502c67183214f61bde361c93 {"aliquot_tag": "ALQ_557afac8", "sample": "S36", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06427.miRNA-Seq.S45_L001_R1.T C3L-06427 CM miRNA-Seq tumor CPT0373310009 221109_UNC51-VH00562_149_AAAV5CLHV_TCGAAG_S45_L001_R1_001.unaln.bam 337565761 BAM S45_L001_R1 submitted_unaligned CPTAC3 5334d739-879f-4177-bded-1d0f6bf3c809 a02f7eb21f38f89ae3052db6492c8237 {"aliquot_tag": "ALQ_d84f9336", "sample": "S45", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06428.miRNA-Seq.S39_L001_R1.T C3L-06428 CM miRNA-Seq tumor CPT0335270009 221109_UNC51-VH00562_149_AAAV5CLHV_TAATCG_S39_L001_R1_001.unaln.bam 337152551 BAM S39_L001_R1 submitted_unaligned CPTAC3 2b4203f3-eb2e-4ef4-a568-1f44f633fd39 5f8adc4776bd2b981379691aa1d276d4 {"aliquot_tag": "ALQ_7bc98ef3", "sample": "S39", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06430.miRNA-Seq.S11_L001_R1.T C3L-06430 CM miRNA-Seq tumor CPT0393390006 221103_UNC51-VH00562_145_AAAVKL3HV_CAACTA_S11_L001_R1_001.unaln.bam 478537780 BAM S11_L001_R1 submitted_unaligned CPTAC3 d23030f4-ea93-4117-9f15-223a2a83a4be 4de8f05f2b0afa2d4361af902f46124d {"aliquot_tag": "ALQ_6d0ad754", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06433.miRNA-Seq.S40_L001_R1.T C3L-06433 CM miRNA-Seq tumor CPT0335430009 221109_UNC51-VH00562_149_AAAV5CLHV_TACAGC_S40_L001_R1_001.unaln.bam 338563992 BAM S40_L001_R1 submitted_unaligned CPTAC3 72004c69-e9c9-4971-a4ff-92bd63e53a3c 2800bc0ffb592fbaf376b54f51f469cf {"aliquot_tag": "ALQ_5810cb2e", "sample": "S40", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06435.miRNA-Seq.S46_L001_R1.T C3L-06435 CM miRNA-Seq tumor CPT0373330009 221109_UNC51-VH00562_149_AAAV5CLHV_TCGGCA_S46_L001_R1_001.unaln.bam 322906187 BAM S46_L001_R1 submitted_unaligned CPTAC3 779444a2-deb5-40e8-b816-6b951c255ba2 44acd0e056115797a146cc374e12d003 {"aliquot_tag": "ALQ_a28fc056", "sample": "S46", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06534.MethArray.Green.Tbm C3L-06534 AML Methylation_Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6afaf6c3-283a-4238-96e3-efbfa196ea4f ca475f5a1f5644658b12474b91e8a12c {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06534.MethArray.Red.Tbm C3L-06534 AML Methylation_Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 c8ba1d9e-66d0-4570-a96d-1bf67567e4e4 74e1fdfe870f4c69cfc627d16fee2f9c {"aliquot_tag": "ALQ_f9f769d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06534.miRNA-Seq.S49_L008_R1.Tbm C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTAGCT_S49_L008_R1_001.unaln.bam 280032746 BAM S49_L008_R1 submitted_unaligned CPTAC3 a0f1ca8f-7fb4-4b4b-8a7f-1bd43737e2ad 7e11b732e12156a5cbd301fa63a4a7ad {"aliquot_tag": "ALQ_be571300", "sample": "S49", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} @@ -19403,6 +19496,8 @@ C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal CPT0405340002 CPT0405340002.Whole C3L-06625.WXS.N.hg38 C3L-06625 GBM WXS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wxs_gdc_realn.bam 37479287643 BAM harmonized CPTAC3 12c76c83-4c16-4016-8594-e04207caf5e5 4cb124ebccd8b6f4e4db576091fefcf1 {"aliquot_tag": "ALQ_8a099424", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3L-06625.WXS.T C3L-06625 GBM WXS tumor CPT0406420007 CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM submitted_aligned CPTAC3 890457f0-bee4-4471-aab4-2343d2d208a9 6f3a7ebac22acfdd7c23ac434b160fe9 {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06625.WXS.T.hg38 C3L-06625 GBM WXS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wxs_gdc_realn.bam 32707416253 BAM harmonized CPTAC3 926f6d61-0f53-4923-96cf-73626b0e0fe7 18ec221717fef1fa4068eefa8a88413f {"aliquot_tag": "ALQ_59cebf2e", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06715.miRNA-Seq.S2_L001_R1.A C3L-06715 CM miRNA-Seq tissue_normal CPT0373010012 221103_UNC51-VH00562_145_AAAVKL3HV_ACTGAT_S2_L001_R1_001.unaln.bam 449381725 BAM S2_L001_R1 submitted_unaligned CPTAC3 67f66037-498a-4248-ac26-01d9bbf8d640 bd0d08f2e7770a7fa6ee50d3e26e1805 {"aliquot_tag": "ALQ_d0120951", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3L-06715.miRNA-Seq.S6_L001_R1.T C3L-06715 CM miRNA-Seq tumor CPT0373420009 221103_UNC51-VH00562_145_AAAVKL3HV_ATCACG_S6_L001_R1_001.unaln.bam 235827690 BAM S6_L001_R1 submitted_unaligned CPTAC3 438e5bdd-7719-43bd-bfc8-88c484491b25 c4855d8f5eaf320a227a13377f80ba3c {"aliquot_tag": "ALQ_82ead95e", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06801.MethArray.Green.Tbm C3L-06801 AML Methylation_Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Grn.idat 13677888 IDAT Green NA CPTAC3 12a60d2f-182b-4cbd-93bf-75957731562a 130c1c5738449f2c5c03e6d1d4349647 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06801.MethArray.Red.Tbm C3L-06801 AML Methylation_Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Red.idat 13677888 IDAT Red NA CPTAC3 3b21f869-af3f-4fcf-ba4e-e44ef358a88b 8ade34335c6249cbec15f3c10c04e546 {"aliquot_tag": "ALQ_19dc7a73", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06801.miRNA-Seq.S30_L002_R1.Tbm C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCGTCC_S30_L002_R1_001.unaln.bam 197434802 BAM S30_L002_R1 submitted_unaligned CPTAC3 8a58be63-7a82-467d-8cc6-e2de62e31624 e1c278ecf3f8ee47fe0402f11a27e0d7 {"aliquot_tag": "ALQ_abfca663", "sample": "S30", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} @@ -19491,7 +19586,7 @@ C3L-06809.WXS.Tbm.hg38 C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 fde4043 C3L-06912.MethArray.Green.T C3L-06912 LGG Methylation_Array tumor CPT0388940011 206009560066_R04C01_Grn.idat 13677950 IDAT Green NA CPTAC3 d8921cb7-13c6-493a-bec1-956b0c0b9acf b986d5a861649338c3fdd0b9409b907a {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06912.MethArray.Red.T C3L-06912 LGG Methylation_Array tumor CPT0388940011 206009560066_R04C01_Red.idat 13677950 IDAT Red NA CPTAC3 b31b7919-5e5e-4f48-b680-be7b5b94935c eb5afa5e81d98239383277ef71b86715 {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06912.miRNA-Seq.S5_L003_R1.T C3L-06912 LGG miRNA-Seq tumor CPT0388940008 220505_UNC32-K00270_0319_AHMV2KBBXY_CGGAAT_S5_L003_R1_001.unaln.bam 386996923 BAM S5_L003_R1 submitted_unaligned CPTAC3 c31ac29e-a56e-4e48-b377-caf32badf113 b3050cf5276ec747c59d992e1fc45dd1 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S5", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3L-06912.miRNA-Seq.T.hg38 C3L-06912 LGG miRNA-Seq tumor CPT0388940008 dd37739a-f81b-472f-89ea-f146d9ac356a_mirnaseq_gdc_realn.bam 436232429 BAM harmonized CPTAC3 a25db8b9-eabf-48f6-b771-a622614d55e7 4b6810155e49b65050a0ccd59f8ddd24 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06912.miRNA-Seq.T.hg38 C3L-06912 LGG miRNA-Seq tumor CPT0388940008 dd37739a-f81b-472f-89ea-f146d9ac356a_mirnaseq_gdc_realn.bam 436232429 BAM harmonized CPTAC3 a25db8b9-eabf-48f6-b771-a622614d55e7 4b6810155e49b65050a0ccd59f8ddd24 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06912.RNA-Seq.chimeric.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.chimeric.gdc_realn.bam 468324695 BAM chimeric harmonized CPTAC3 cf5d0d25-96a8-4a6b-afe5-6d8936b1388f 9d2a2e860aa301c1eefa1c0388e8b0e7 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3L-06912.RNA-Seq.genomic.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.genomic.gdc_realn.bam 7787271041 BAM genomic harmonized CPTAC3 94dbd3f9-2f9f-4182-8c61-e3b7fa6ec94b ce8cd6aed5308788986485a72ccdee50 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3L-06912.RNA-Seq.S2_L006_R1.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R1_001.fastq.gz 3876945813 FASTQ S2_L006_R1 submitted_unaligned CPTAC3 8f2c2b6c-85de-49cf-86b7-f760a75e157a 0069031bc035562f5cc4e483f50f2875 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S2", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -19501,6 +19596,7 @@ C3L-06912.WGS.N C3L-06912 LGG WGS blood_normal CPT0389050005 CPT0389050005.Whole C3L-06912.WGS.N.hg38 C3L-06912 LGG WGS blood_normal CPT0389050005 b61c8ac3-5e86-4b02-a3aa-e97d6b726278_wgs_gdc_realn.bam 208686775527 BAM harmonized CPTAC3 d460cddb-a3c7-4d98-81d7-b8ba85d26d9f 71aff830a35e54295f5234eff72d4f0f {"aliquot_tag": "ALQ_dfbd4691", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3L-06912.WGS.T C3L-06912 LGG WGS tumor CPT0388940011 CPT0388940011.WholeGenome.RP-2158.bam 129779104068 BAM submitted_aligned CPTAC3 b6f271ab-8986-4465-a214-f06c7e3b3d37 47ba8b844ec46eb1b3c81ca285afc00f {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06912.WGS.T.hg38 C3L-06912 LGG WGS tumor CPT0388940011 cd25fa75-5b4a-422b-93b9-7e1c7c7c36af_wgs_gdc_realn.bam 389435165923 BAM harmonized CPTAC3 89e198c5-0392-47c0-943f-4f4a95fa8275 b584aa63fb506398d82b2148028ae839 {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-06933.miRNA-Seq.S12_L001_R1.T C3L-06933 CM miRNA-Seq tumor CPT0422570006 221103_UNC51-VH00562_145_AAAVKL3HV_CACCGG_S12_L001_R1_001.unaln.bam 383120957 BAM S12_L001_R1 submitted_unaligned CPTAC3 6da253c9-49d2-4675-b438-81e2a7cd2f09 9ec4372455aff80bbef12a9972993a9a {"aliquot_tag": "ALQ_9b1ff003", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06951.miRNA-Seq.S24_L005_R1.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM S24_L005_R1 submitted_unaligned CPTAC3 b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca {"aliquot_tag": "ALQ_698c9c17", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} @@ -19750,6 +19846,7 @@ C3L-07037.RNA-Seq.genomic.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT03479100 C3L-07037.RNA-Seq.S2_L001_R1.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ S2_L001_R1 submitted_unaligned CPTAC3 3399328b-16f5-4c7a-8e1f-338368645ed8 3619b3194ff2aa47564da23b1342f5af {"aliquot_tag": "ALQ_aa2df8b", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-07037.RNA-Seq.S2_L001_R2.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ S2_L001_R2 submitted_unaligned CPTAC3 db70a6b8-672d-4a13-bd16-bd52d87843fe 5260fcae215a5f3e074db2f6ad879f33 {"aliquot_tag": "ALQ_aa2df8b", "sample": "S2", "lane": "L001", "read": "R2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-07037.RNA-Seq.transcriptome.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.transcriptome.gdc_realn.bam 10569505762 BAM transcriptome harmonized CPTAC3 291861f3-2e47-4cac-a807-589bdf58c20c ff694eda7618b8f8c68456fdb8bf244c {"aliquot_tag": "ALQ_aa2df8b", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3L-07111.miRNA-Seq.S19_L001_R1.A C3L-07111 CM miRNA-Seq tissue_normal CPT0411050009 221103_UNC51-VH00562_145_AAAVKL3HV_CCAACA_S19_L001_R1_001.unaln.bam 351001356 BAM S19_L001_R1 submitted_unaligned CPTAC3 f233b5aa-4ca8-420a-baa6-fb9a06e0ed10 f904e79631370ba9ab6da7e534360503 {"aliquot_tag": "ALQ_9eca323f", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3L-07202.MethArray.Green.T C3L-07202 GBM Methylation_Array tumor CPT0407650010 205555390174_R06C01_Grn.idat 13677965 IDAT Green NA CPTAC3 222960f7-20b1-4046-b15e-2511a9aaf42f 851fa7f6e1508cf64bb570adc2048557 {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07202.MethArray.Red.T C3L-07202 GBM Methylation_Array tumor CPT0407650010 205555390174_R06C01_Red.idat 13677965 IDAT Red NA CPTAC3 ceb8a577-4b0b-47d0-a640-a597c25da03b acc01d2fb102ab19fc4536a3acba6e8d {"aliquot_tag": "ALQ_872e6d63", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07202.miRNA-Seq.S5_L005_R1.T C3L-07202 GBM miRNA-Seq tumor CPT0407650007 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L005_R1_001.unaln.bam 142731958 BAM S5_L005_R1 submitted_unaligned CPTAC3 bafbc425-2aa6-4d3b-9147-84e2537a3d4a e338bb6ee677f9faa5edc4db5b6920cc {"aliquot_tag": "ALQ_51c981", "sample": "S5", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -19770,7 +19867,7 @@ C3L-07202.WXS.T.hg38 C3L-07202 GBM WXS tumor CPT0407650010 ce1dba67-d732-46e3-9e C3L-07212.MethArray.Green.T C3L-07212 LGG Methylation_Array tumor CPT0447560012 206250290178_R01C01_Grn.idat 13677942 IDAT Green NA CPTAC3 4f08cfbd-be2d-4a50-b19b-e1b22347033d bf4dad83e8e006bbe9e2d55985973d85 {"aliquot_tag": "ALQ_2c5e0acb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07212.MethArray.Red.T C3L-07212 LGG Methylation_Array tumor CPT0447560012 206250290178_R01C01_Red.idat 13677942 IDAT Red NA CPTAC3 8e8b37a3-d0f9-41da-a850-2baf9643d279 dc45b12943ecb40ace61cdc1f7ff1143 {"aliquot_tag": "ALQ_2c5e0acb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07212.miRNA-Seq.S6_L003_R1.T C3L-07212 LGG miRNA-Seq tumor CPT0447560007 220505_UNC32-K00270_0319_AHMV2KBBXY_CTAGCT_S6_L003_R1_001.unaln.bam 310872045 BAM S6_L003_R1 submitted_unaligned CPTAC3 e44650c7-2e73-4786-bb16-e7a3d837fe16 06345681442ce851c00904871d0a65ba {"aliquot_tag": "ALQ_452fcf05", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3L-07212.miRNA-Seq.T.hg38 C3L-07212 LGG miRNA-Seq tumor CPT0447560007 deca3f1a-5e78-4c28-a713-60d30337a896_mirnaseq_gdc_realn.bam 343046530 BAM harmonized CPTAC3 72a1c78c-d3bc-4888-9875-03abdddc0ea8 b908081b3c2c700bf492f17005d6ce0b {"aliquot_tag": "ALQ_452fcf05", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3L-07212.miRNA-Seq.T.hg38 C3L-07212 LGG miRNA-Seq tumor CPT0447560007 deca3f1a-5e78-4c28-a713-60d30337a896_mirnaseq_gdc_realn.bam 343046530 BAM harmonized CPTAC3 72a1c78c-d3bc-4888-9875-03abdddc0ea8 b908081b3c2c700bf492f17005d6ce0b {"aliquot_tag": "ALQ_452fcf05", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07212.RNA-Seq.genomic.T.hg38 C3L-07212 LGG RNA-Seq tumor CPT0447560007 99d94a22-d7a8-4761-83cb-efb10f02b555.rna_seq.genomic.gdc_realn.bam 2116258222 BAM genomic harmonized CPTAC3 1d6d9931-9d25-4a05-8a03-8eb55cb2e3f7 407ef490f950e1c8fe1e39e5c9afd3f3 {"aliquot_tag": "ALQ_452fcf05", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3L-07212.RNA-Seq.S3_L006_R1.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R1_001.fastq.gz 2006897789 FASTQ S3_L006_R1 submitted_unaligned CPTAC3 93b39fb7-26e7-4e70-9145-726cd8868b5b eb2c1e2b53c14f292b2fc9e2dc637a97 {"aliquot_tag": "ALQ_452fcf05", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07212.RNA-Seq.S3_L006_R2.T C3L-07212 LGG RNA-Seq tumor CPT0447560007 220603_UNC32-K00270_0322_BHNKFLBBXY_GCACGGAC-GTCTCGCA_S3_L006_R2_001.fastq.gz 2105896279 FASTQ S3_L006_R2 submitted_unaligned CPTAC3 ec4877da-dfc4-4a6a-ac9c-5500fa56ba2c fa90596fa5a4ff3fb26b3750a624bb09 {"aliquot_tag": "ALQ_452fcf05", "sample": "S3", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "validated"} @@ -20440,8 +20537,10 @@ C3N-00177.WXS.T.hg38 C3N-00177 CCRCC WXS tumor CPT0020120009 e4eff64c-93e3-4395- C3N-00179.MethArray.Green.T C3N-00179 CM Methylation_Array tumor CPT0019940009 202178770100_R06C01_Grn.idat 13676235 IDAT Green NA CPTAC3 fb8958aa-8382-49b9-a936-01bfb417ac86 65adf800f44d7f06ff4835a66285e045 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00179.MethArray.Red.T C3N-00179 CM Methylation_Array tumor CPT0019940009 202178770100_R06C01_Red.idat 13676235 IDAT Red NA CPTAC3 061a782d-b688-4ffd-aefe-1538c5ce339b eec109a4ea0a8b16059a4a989bd97240 {"aliquot_tag": "ALQ_eaa6552c", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00179.miRNA-Seq.A.hg38 C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 10b609f0-b6e9-40a9-9d11-9a20ebd1fbc4_mirnaseq_gdc_realn.bam 181050678 BAM harmonized CPTAC3 03eff811-0027-4e4d-b3d0-2666983fa6a9 3bfcf2c5eacbc0bf19c83ff7a5b767f8 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.miRNA-Seq.S2_L001_R1.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 221111_UNC51-VH00562_151_AAATWY5HV_ACTGAT_S2_L001_R1_001.unaln.bam 396323398 BAM S2_L001_R1 submitted_unaligned CPTAC3 8ffdd989-972f-4420-9133-6d01b74ecf8c 87e05c9b390ef5e0aa21504a336ce0f5 {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S2", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-00179.miRNA-Seq.S45_L005_R1.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L005_R1_001.unaln.bam 184122693 BAM S45_L005_R1 submitted_unaligned CPTAC3 9bdd17b5-d312-4dd8-90d2-6858d9bd999a e0eb85e3128bc004a7ce09a0e8f91bf5 {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S45", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00179.miRNA-Seq.S48_L002_R1.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 181119_UNC31-K00269_0165_AH27WCBBXY_GGTAGC_S48_L002_R1_001.unaln.bam 157988960 BAM S48_L002_R1 submitted_unaligned CPTAC3 08b0ea2d-7e07-4125-8103-f520f2d29eae 9338b84c19cb3ce787f4851699611758 {"aliquot_tag": "ALQ_87a6bf3f", "sample": "S48", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00179.miRNA-Seq.S9_L001_R1.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 221118_UNC51-VH00562_156_AAAV2MKHV_CAACTA_S9_L001_R1_001.unaln.bam 512982005 BAM S9_L001_R1 submitted_unaligned CPTAC3 b99740f2-45d4-4945-8428-763cafe94107 41b82adf7981a9cce43bcaf695b153a6 {"aliquot_tag": "ALQ_8d0c18d0", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00179.miRNA-Seq.T.hg38 C3N-00179 CM miRNA-Seq tumor CPT0019940014 38590989-1eaf-4665-86c5-f1452536afb4_mirnaseq_gdc_realn.bam 192722490 BAM harmonized CPTAC3 e1935714-a35e-41f5-a5c1-2313ddc36543 58c45f3c6ebc494a741c186d19d9eb25 {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00179.RNA-Seq.chimeric.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.chimeric.gdc_realn.bam 23565563 BAM chimeric harmonized CPTAC3 c6e615d2-cccf-4c24-ae20-c5e4e4d2b0de 9ec4892fd2e95998731e792dd69deb41 {"aliquot_tag": "ALQ_87a6bf3f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-00179.RNA-Seq.chimeric.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.chimeric.gdc_realn.bam 77306360 BAM chimeric harmonized CPTAC3 4831222a-44f0-4282-b596-95110837d8db 9fa202043a2489313338ffefd7bb163c {"aliquot_tag": "ALQ_8d0c18d0", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -20690,6 +20789,8 @@ C3N-00204.WXS.N C3N-00204 HNSCC WXS blood_normal CPT0085320002 CPT0085320002.Who C3N-00204.WXS.N.hg38 C3N-00204 HNSCC WXS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wxs_gdc_realn.bam 34063720268 BAM harmonized CPTAC3 ea384a65-ca41-4c64-b65a-16f62bbd9604 b0133868e644ac458c71194d5d007c45 {"aliquot_tag": "ALQ_8b402b3d", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-00204.WXS.T C3N-00204 HNSCC WXS tumor CPT0084630012 CPT0084630012.WholeExome.RP-1303.bam 49922626049 BAM submitted_aligned CPTAC3 d9f42f05-a3ac-4b50-bf96-595185f860d3 102d50fa94dadac76d4b412f2304eaaa {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00204.WXS.T.hg38 C3N-00204 HNSCC WXS tumor CPT0084630012 5eab67d6-ad15-43ea-b7d4-265945e3ba09_wxs_gdc_realn.bam 69573604165 BAM harmonized CPTAC3 e5b8a4d8-f631-4852-afd2-8aa05e1a2267 4be77a335c7c413825efe3ec627984a0 {"aliquot_tag": "ALQ_5981a9cb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-00209.miRNA-Seq.S16_L001_R1.A C3N-00209 CM miRNA-Seq tissue_normal CPT0084710008 221111_UNC51-VH00562_151_AAATWY5HV_CAGGCG_S16_L001_R1_001.unaln.bam 382862650 BAM S16_L001_R1 submitted_unaligned CPTAC3 f24d8e96-09d5-4314-a4bf-7579e9f235c0 9dc1ca5dc91a94322d5fa6c59518193e {"aliquot_tag": "ALQ_11d3f151", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-00209.miRNA-Seq.S3_L001_R1.T C3N-00209 CM miRNA-Seq tumor CPT0084690007 221111_UNC51-VH00562_151_AAATWY5HV_ACTTGA_S3_L001_R1_001.unaln.bam 219532714 BAM S3_L001_R1 submitted_unaligned CPTAC3 db3cf3d1-894f-4e24-80fb-ed6614dc4d4f ef0ceba71c317c69be1fb2bd205fb8a8 {"aliquot_tag": "ALQ_7a4074a4", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00211.MethArray.Green.T C3N-00211 LSCC Methylation_Array tumor CPT0090440009 202234370119_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b53eacf1-5189-4388-ab8a-ee4fcf8bd8a3 c12f9c2783aa433deee582063063cb21 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00211.MethArray.Red.T C3N-00211 LSCC Methylation_Array tumor CPT0090440009 202234370119_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 82b90a99-b0ea-47a6-9988-86afa458c304 4188430680661b8603d5d04a18556a11 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00211.miRNA-Seq.S24_L002_R1.T C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L002_R1_001.unaln.bam 734277190 BAM S24_L002_R1 submitted_unaligned CPTAC3 be6461f0-fa53-47f5-a156-8d6704c0220e 918485b323551f56574a26d0a612f66e {"aliquot_tag": "ALQ_80fa0505", "sample": "S24", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -20707,8 +20808,8 @@ C3N-00211.WXS.N C3N-00211 LSCC WXS blood_normal CPT0092490002 CPT0092490002.Whol C3N-00211.WXS.N.hg38 C3N-00211 LSCC WXS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wxs_gdc_realn.bam 53607358989 BAM harmonized CPTAC3 7f5f833c-d120-4318-97b6-8988f74e29e3 4ba755af92e1000478c0ee471c45888f {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-00211.WXS.T C3N-00211 LSCC WXS tumor CPT0090440009 CPT0090440009.WholeExome.RP-1303.bam 38073808710 BAM submitted_aligned CPTAC3 e23a0176-239f-4d2d-9daf-2a54a46b21c3 f0016248a78001fe8af8543250f24efa {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00211.WXS.T.hg38 C3N-00211 LSCC WXS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wxs_gdc_realn.bam 51587274152 BAM harmonized CPTAC3 5475774a-cfde-4aa3-8cd1-85fda9e6260f bdd0bf8c3a979f119c6e555130ee3135 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM submitted_aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM submitted_aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00217.MethArray.Green.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73731e5f-72f0-4b4c-b2b3-a799ffe23fdb c6620ec6eefba1771976d282b5190b0e {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-00217.MethArray.Green.T C3N-00217 LUAD Methylation_Array tumor CPT0090570010 202234360025_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79a982ef-e333-401b-8314-c23d667f1a40 36b5453c0b6395390b2bfa4205a5213b {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00217.MethArray.Red.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cf25d240-6ed7-44cc-afa5-d802b41507ac 6c30c58c65c3c519eb1ce6743337e030 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -25211,7 +25312,9 @@ C3N-01079.WXS.N.hg38 C3N-01079 UCEC WXS blood_normal CPT0211240002 58064c6a-c59b C3N-01079.WXS.T C3N-01079 UCEC WXS tumor CPT0211120007 CPT0211120007.WholeExome.RP-1303.bam 23292018621 BAM submitted_aligned CPTAC3 6deaf1ce-6405-47e4-9967-cda4828ab11b a2e9339384b45ab1efe21acb3318ed1a {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01079.WXS.T.hg38 C3N-01079 UCEC WXS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wxs_gdc_realn.bam 32289014569 BAM harmonized CPTAC3 8e90126a-f7b3-4e3c-be03-9bc5649de5d4 da1ffdb7c7837a94dfffc206405e3064 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01080.MethArray.Green.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f524b12a-703c-4bbb-852c-4388a7988fc1 01e9ebee992df49b3e3308cfb01d96c7 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.MethArray.Green.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 500f1bc6-cd94-405b-9414-b70e60484a08 969425da800e3183fd0f01f8a73f47dd {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01080.MethArray.Red.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 1234a8af-5e29-4859-ad25-0f53b753ac0d 036d93ef8e5b5f93eb30772086e125ff {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} +C3N-01080.MethArray.Red.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 9b1a2bb1-8cee-49a7-8931-8a2fbb8eb6f5 83c25f2997d008337ee6ad449c7238c9 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM harmonized CPTAC3 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01080.miRNA-Seq.S12_L003_R1.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L003_R1_001.unaln.bam 152442457 BAM S12_L003_R1 submitted_unaligned CPTAC3 d0947c5c-0531-4424-b590-6f3788393d77 b4a2508cb9f338ef87175ea1ce555404 {"aliquot_tag": "ALQ_562410ab", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01080.miRNA-Seq.S1_L001_R1.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM S1_L001_R1 submitted_unaligned CPTAC3 b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f {"aliquot_tag": "ALQ_d964e50b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -25865,7 +25968,7 @@ C3N-01197.WXS.T.hg38 C3N-01197 GBM WXS tumor CPT0078480013 8a4a56fd-dd41-4555-b2 C3N-01199.MethArray.Green.T C3N-01199 GBM Methylation_Array tumor CPT0457680011 205987780179_R05C01_Grn.idat 13677940 IDAT Green NA CPTAC3 7cfef310-16d3-4e83-ade2-cab54a591e2a df039c0706457135585e665474873fa2 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01199.MethArray.Red.T C3N-01199 GBM Methylation_Array tumor CPT0457680011 205987780179_R05C01_Red.idat 13677940 IDAT Red NA CPTAC3 82e35981-d14d-4901-b85a-0da82e7dbf87 e28beecf5bc080a642ce933c92e170b1 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01199.miRNA-Seq.S7_L003_R1.T C3N-01199 GBM miRNA-Seq tumor CPT0457680008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTATAC_S7_L003_R1_001.unaln.bam 264368830 BAM S7_L003_R1 submitted_unaligned CPTAC3 64dab22d-ddf0-4ceb-9775-95cb13aba156 63b556759c4323d4308c452bf5397ad1 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S7", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3N-01199.miRNA-Seq.T.hg38 C3N-01199 GBM miRNA-Seq tumor CPT0457680008 35e119ee-ff02-4ac2-9cfa-bc26defda320_mirnaseq_gdc_realn.bam 301722755 BAM harmonized CPTAC3 1d9c73a5-81bc-451c-a43a-d906405f7445 38c44fa8740549cf939d0ae836fe13d0 {"aliquot_tag": "ALQ_209e1ec5", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-01199.miRNA-Seq.T.hg38 C3N-01199 GBM miRNA-Seq tumor CPT0457680008 35e119ee-ff02-4ac2-9cfa-bc26defda320_mirnaseq_gdc_realn.bam 301722755 BAM harmonized CPTAC3 1d9c73a5-81bc-451c-a43a-d906405f7445 38c44fa8740549cf939d0ae836fe13d0 {"aliquot_tag": "ALQ_209e1ec5", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01199.RNA-Seq.genomic.T.hg38 C3N-01199 GBM RNA-Seq tumor CPT0457680008 0e56f6aa-3dc2-41bc-aefa-d572e56f3e73.rna_seq.genomic.gdc_realn.bam 4799661040 BAM genomic harmonized CPTAC3 708b5ad7-e687-4227-a80a-0de74a892c12 925f65f81a6175898428e52a011b67a8 {"aliquot_tag": "ALQ_209e1ec5", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-01199.RNA-Seq.S4_L006_R1.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R1_001.fastq.gz 5000286535 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 742a45a1-2eb8-44d5-912e-8747b99a93d4 2153ef9bd3c1d42588e4749539a8fdbf {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01199.RNA-Seq.S4_L006_R2.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R2_001.fastq.gz 5203845866 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 d457808c-dc8e-4904-9c85-9a6c5fff4b0a 02bce17f1695973dd385d8cea6689575 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "validated"} @@ -27195,6 +27298,7 @@ C3N-01419.WXS.N C3N-01419 LUAD WXS blood_normal CPT0119310002 CPT0119310002.Whol C3N-01419.WXS.N.hg38 C3N-01419 LUAD WXS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wxs_gdc_realn.bam 22949472162 BAM harmonized CPTAC3 7bad8534-983e-4be5-95ac-1b2c6a264267 b7c07b191129f30704a47d9b93003305 {"aliquot_tag": "ALQ_37434f1", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-01419.WXS.T C3N-01419 LUAD WXS tumor CPT0118040009 CPT0118040009.WholeExome.RP-1303.bam 22614668149 BAM submitted_aligned CPTAC3 64662474-47f1-4aeb-8139-517018852172 61acffc16f8911b63f4e802823f55fdc {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01419.WXS.T.hg38 C3N-01419 LUAD WXS tumor CPT0118040009 b6f5e659-0d84-4f62-b599-914804ce42fb_wxs_gdc_realn.bam 31152710196 BAM harmonized CPTAC3 fd2a837e-1888-4a62-b3f6-0c460ddb6660 949aaae458c3eee27659c18dbf3a102d {"aliquot_tag": "ALQ_7ca51b13", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01481.miRNA-Seq.S4_L001_R1.T C3N-01481 CM miRNA-Seq tumor CPT0105810009 221111_UNC51-VH00562_151_AAATWY5HV_AGTCAA_S4_L001_R1_001.unaln.bam 380837939 BAM S4_L001_R1 submitted_unaligned CPTAC3 543f6aa7-ee96-42e0-923e-b0f09cf800fe 9ea99f96ac320c8c397e139ef984e939 {"aliquot_tag": "ALQ_f56b7750", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01488.MethArray.Green.A C3N-01488 LUAD Methylation_Array tissue_normal CPT0118180009 203027380028_R05C01_Grn.idat 13676241 IDAT Green NA CPTAC3 76583378-97ff-4ad6-8e23-2c7c1b325000 82a38fb371bf24781861bb02b62037f3 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01488.MethArray.Green.T C3N-01488 LUAD Methylation_Array tumor CPT0118160009 202234370119_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 4a4e6ee3-5da1-48aa-b06c-38779c1a0192 b360d5b8c605b4b243ebd0003c82ffe2 {"aliquot_tag": "ALQ_cd399bd6", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01488.MethArray.Red.A C3N-01488 LUAD Methylation_Array tissue_normal CPT0118180009 203027380028_R05C01_Red.idat 13676241 IDAT Red NA CPTAC3 5fab6cee-f771-4ff7-9f1c-bd5a11196343 9729619f6bbf8437eb0a2e5fee424f04 {"aliquot_tag": "ALQ_720925b7", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -27255,6 +27359,10 @@ C3N-01489.WXS.N C3N-01489 LUAD WXS blood_normal CPT0108270002 CPT0108270002.Whol C3N-01489.WXS.N.hg38 C3N-01489 LUAD WXS blood_normal CPT0108270002 109c49c2-5da7-479e-ae3e-2faf07ae9244_wxs_gdc_realn.bam 52853972717 BAM harmonized CPTAC3 c5a6d394-659c-43cf-8b4f-e7d637d4430e 8c92834850224b4191d13c739688a5ed {"aliquot_tag": "ALQ_2db519de", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-01489.WXS.T C3N-01489 LUAD WXS tumor CPT0105940009 CPT0105940009.WholeExome.RP-1303.bam 26982320409 BAM submitted_aligned CPTAC3 f57b6c5a-2e3c-410f-b0ed-db06b57bb59c 23e643c40a6e93f0a5dab549e5dd04e0 {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01489.WXS.T.hg38 C3N-01489 LUAD WXS tumor CPT0105940009 430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wxs_gdc_realn.bam 37205601233 BAM harmonized CPTAC3 78b86af9-8dec-45da-b00f-211f7ac8c5e2 7f6b6c008769818e6945592314369eca {"aliquot_tag": "ALQ_f6d72b85", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01493.miRNA-Seq.S12_L001_R1.A C3N-01493 CM miRNA-Seq tissue_normal CPT0106090009 221118_UNC51-VH00562_156_AAAV2MKHV_CACTCA_S12_L001_R1_001.unaln.bam 293853677 BAM S12_L001_R1 submitted_unaligned CPTAC3 903bd10c-f3d3-4646-94da-f901c06f3538 d7defd5625d2b1180ce34d34f6e0b900 {"aliquot_tag": "ALQ_18a0a461", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01493.miRNA-Seq.S30_L001_R1.T C3N-01493 CM miRNA-Seq tumor CPT0106070009 221111_UNC51-VH00562_151_AAATWY5HV_GATCAG_S30_L001_R1_001.unaln.bam 437686724 BAM S30_L001_R1 submitted_unaligned CPTAC3 7b056f71-b459-4ac9-a8e5-96b69469cd59 70662e48ca4bff0db1d579738674afa8 {"aliquot_tag": "ALQ_a7901a00", "sample": "S30", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01494.miRNA-Seq.S5_L001_R1.T C3N-01494 CM miRNA-Seq tumor CPT0106200009 221111_UNC51-VH00562_151_AAATWY5HV_AGTTCC_S5_L001_R1_001.unaln.bam 398508145 BAM S5_L001_R1 submitted_unaligned CPTAC3 71c18c17-4b7a-438b-85c5-b95f2cbc0930 ee8b8001ad6469486c87e33e434a7c17 {"aliquot_tag": "ALQ_5878671b", "sample": "S5", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01495.miRNA-Seq.S42_L001_R1.T C3N-01495 CM miRNA-Seq tumor CPT0213080010 221111_UNC51-VH00562_151_AAATWY5HV_TATAAT_S42_L001_R1_001.unaln.bam 263708202 BAM S42_L001_R1 submitted_unaligned CPTAC3 a214b863-c682-4460-bb53-b4af0ba04e34 d07b1326aa28298cad0f9e859964e75a {"aliquot_tag": "ALQ_e21817c8", "sample": "S42", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01502.ADD_17a18cea.MethArray.Green.T C3N-01502 PDA Methylation_Array tumor CPT0065570009 202184990052_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 679f1d0f-c921-4325-b404-260a475ccc44 cf7581ce6f668c7e900511a5c235e58e {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01502.ADD_17a18cea.MethArray.Red.T C3N-01502 PDA Methylation_Array tumor CPT0065570009 202184990052_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a8e12dc-7e97-4f17-9755-17c6fe9285b0 df448cb5b05c10f815e3f7a2bdc6e4ea {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01502.ADD_17a18cea.WGS.T C3N-01502 PDA WGS tumor CPT0065570009 CPT0065570009.WholeGenome.RP-1303.bam 69797664919 BAM submitted_aligned CPTAC3 73ae0bb6-13ae-496e-ab52-32bda494159f f72616c12ebbdd44350fbc382166e72b {"aliquot_tag": "ADD_17a18cea", "aliquot_annotation": "Duplicate item: Additional DNA for PDA Deep Sequencing", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -27657,6 +27765,9 @@ C3N-01529.WXS.N C3N-01529 UCEC WXS blood_normal CPT0097470002 CPT0097470002.Whol C3N-01529.WXS.N.hg38 C3N-01529 UCEC WXS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wxs_gdc_realn.bam 65690263407 BAM harmonized CPTAC3 e98e0298-2b45-4c60-ae37-fd3d7b29a777 91d34bbae41f8c04d8441535098386a2 {"aliquot_tag": "ALQ_5908542", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-01529.WXS.T C3N-01529 UCEC WXS tumor CPT0097440009 CPT0097440009.WholeExome.RP-1303.bam 41482211502 BAM submitted_aligned CPTAC3 96fc723e-da7e-4360-9028-100cfbf9af6a 3d5104233cce6bb826b7871a556b2db2 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01529.WXS.T.hg38 C3N-01529 UCEC WXS tumor CPT0097440009 f5ca6776-3248-415a-86d1-48ec87f211d6_wxs_gdc_realn.bam 56483401842 BAM harmonized CPTAC3 91cf1023-d004-44d3-9fde-b9a7615a8aa2 910ac656d80561865706663d20e8de37 {"aliquot_tag": "ALQ_d5e2261a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01530.miRNA-Seq.S1_L001_R1.T C3N-01530 CM miRNA-Seq tumor CPT0096150006 221111_UNC51-VH00562_151_AAATWY5HV_ACAGTG_S1_L001_R1_001.unaln.bam 452885692 BAM S1_L001_R1 submitted_unaligned CPTAC3 74950563-ef8d-43d6-be6e-8188e795bbd8 5a3f2c04b080344359ac39a62d7c9a0e {"aliquot_tag": "ALQ_8e87883c", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01530.miRNA-Seq.S9_L001_R1.A C3N-01530 CM miRNA-Seq tissue_normal CPT0096180005 221111_UNC51-VH00562_151_AAATWY5HV_ATTCCT_S9_L001_R1_001.unaln.bam 440696058 BAM S9_L001_R1 submitted_unaligned CPTAC3 83add14e-43a5-495f-925d-69d6f4cff098 f0f53a33fd14ed202fdfebd9161a842d {"aliquot_tag": "ALQ_ef1e1d37", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01533.miRNA-Seq.S41_L001_R1.T C3N-01533 CM miRNA-Seq tumor CPT0096450009 221111_UNC51-VH00562_151_AAATWY5HV_TAGCTT_S41_L001_R1_001.unaln.bam 442450476 BAM S41_L001_R1 submitted_unaligned CPTAC3 749e137f-3967-4e18-8fa5-ebe883878e26 31302601de2087a0fb4a0a22f5775f71 {"aliquot_tag": "ALQ_4ef5041e", "sample": "S41", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01535.MethArray.Green.T C3N-01535 SAR Methylation_Array tumor CPT0096740009 202234380069_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 0ba9a00a-a40b-4d19-9761-d7b04c1eb048 f9bb50c3dc006bb73a4a1412437b1eac {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01535.MethArray.Red.T C3N-01535 SAR Methylation_Array tumor CPT0096740009 202234380069_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 09829546-1d49-40a9-8115-81c5a5d8ae28 981d9abd3b3b0b20788f8c080ee470f4 {"aliquot_tag": "ALQ_f5015f00", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01535.miRNA-Seq.A.hg38 C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 ade6a093-e55e-488c-bea0-6c4e36d0ee67_mirnaseq_gdc_realn.bam 247358824 BAM harmonized CPTAC3 0d18d188-1158-42b2-b819-ac7b3794c0ca 3c57d1861345e4c2c09493c33116dfe0 {"aliquot_tag": "ALQ_760fd43f", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} @@ -28751,8 +28862,8 @@ C3N-01818.WXS.N C3N-01818 GBM WXS blood_normal CPT0168320002 CPT0168320002.Whole C3N-01818.WXS.N.hg38 C3N-01818 GBM WXS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wxs_gdc_realn.bam 48343240872 BAM harmonized CPTAC3 f233f5da-c7e9-45e8-9c93-bd18b618d4b9 24627a93091899749976428980e36982 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-01818.WXS.T C3N-01818 GBM WXS tumor CPT0168270006 CPT0168270006.WholeExome.RP-1303.bam 31671952321 BAM submitted_aligned CPTAC3 f14f1716-e463-4ca3-99ec-e3f2bef9c83f c6023b74eefda700bb08b3426a254c7e {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01818.WXS.T.hg38 C3N-01818 GBM WXS tumor CPT0168270006 f9340864-be80-405e-a3a3-e0b123762976_wxs_gdc_realn.bam 42399077248 BAM harmonized CPTAC3 4da3c9fd-7357-4d0f-8d0c-10c9e67f06fc 1418d6dc5ebae3cb6f766ad5ea26e1a9 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM submitted_aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM submitted_aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01823.MethArray.Green.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 509ee701-0c21-43df-91ae-639f9ac26949 83f25435b7efbfe27f65bc68ce1add51 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01823.MethArray.Green.T C3N-01823 LUAD Methylation_Array tumor CPT0097580009 202234380099_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9d223e8-ecf4-4224-ada9-b997b22d90cd eafe63ef2855149f2a321b787bcec04a {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01823.MethArray.Red.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1d79c083-5d16-4660-8b42-091f086f9305 a0a890e789eed03f20b940d6e9ac679c {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -28783,6 +28894,8 @@ C3N-01823.WXS.N C3N-01823 LUAD WXS blood_normal CPT0097610002 CPT0097610002.Whol C3N-01823.WXS.N.hg38 C3N-01823 LUAD WXS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wxs_gdc_realn.bam 35435908121 BAM harmonized CPTAC3 a59668f0-be1f-4eef-ac04-16e2a8d48d5f b0b049ff7b05bb08e037ba1e8ab596d7 {"aliquot_tag": "ALQ_c718d1e9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-01823.WXS.T C3N-01823 LUAD WXS tumor CPT0097580009 CPT0097580009.WholeExome.RP-1303.bam 44032320229 BAM submitted_aligned CPTAC3 3b24fc5b-267c-48ef-a8aa-6454383c5510 2e674956e05723940af2db20f3b1c9ac {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01823.WXS.T.hg38 C3N-01823 LUAD WXS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wxs_gdc_realn.bam 59887110671 BAM harmonized CPTAC3 4041925d-db9d-4daf-85da-8170f8864174 7ec0c47e58d8ac0693252094d54e780b {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-01824.miRNA-Seq.S10_L001_R1.A C3N-01824 CM miRNA-Seq tissue_normal CPT0097180006 221111_UNC51-VH00562_151_AAATWY5HV_CAAAAG_S10_L001_R1_001.unaln.bam 449473935 BAM S10_L001_R1 submitted_unaligned CPTAC3 638c9838-c799-46ba-a745-80594d8c04e7 4439cf4a90c4a34634c143abe738a91a {"aliquot_tag": "ALQ_d0604739", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01824.miRNA-Seq.S32_L001_R1.T C3N-01824 CM miRNA-Seq tumor CPT0097170009 221111_UNC51-VH00562_151_AAATWY5HV_GGCTAC_S32_L001_R1_001.unaln.bam 483546523 BAM S32_L001_R1 submitted_unaligned CPTAC3 5b7cdea5-77ab-4303-ba6f-9b38a4214e62 aea469920f0f04acbc1c9e94b63a66e9 {"aliquot_tag": "ALQ_c28fcd79", "sample": "S32", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01825.MethArray.Green.T C3N-01825 UCEC Methylation_Array tumor CPT0097710009 202234380054_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 b1b2e295-1918-4f45-8012-ca9b86c0e45f 03480cbaeb97b5025bb43ec77619e41c {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01825.MethArray.Red.T C3N-01825 UCEC Methylation_Array tumor CPT0097710009 202234380054_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 d6efa57b-46aa-4fd0-a252-7c2613c4fb2c 88dcdde8b18fd7c4a724f19873906457 {"aliquot_tag": "ALQ_9b96dbc4", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01825.REP_71e99535.MethArray.Green.T C3N-01825 UCEC Methylation_Array tumor CPT0097730006 203027390034_R07C01_Grn.idat 13676226 IDAT Green NA CPTAC3 75510140-ddf8-4f9d-9fc2-fed1fc4664ef f10207e7dec6315edfacfb80a40414eb {"aliquot_tag": "REP_71e99535", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -28918,6 +29031,8 @@ C3N-01843.WXS.N C3N-01843 UCEC WXS blood_normal CPT0098310002 CPT0098310002.Whol C3N-01843.WXS.N.hg38 C3N-01843 UCEC WXS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wxs_gdc_realn.bam 41588850052 BAM harmonized CPTAC3 2c0022ef-c48f-48b0-9409-74cee5cd7fc1 51b55f1c6c36f5acfa6ee238fe700fb8 {"aliquot_tag": "ALQ_619d30b3", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-01843.WXS.T C3N-01843 UCEC WXS tumor CPT0098270009 CPT0098270009.WholeExome.RP-1303.bam 44806548748 BAM submitted_aligned CPTAC3 05532c1f-78aa-4bd4-81ba-7a970f7b4cc9 8f00868e261f02239d4df322e717397b {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01843.WXS.T.hg38 C3N-01843 UCEC WXS tumor CPT0098270009 982621a1-4bca-4b1e-ae32-15d4b9b860b6_wxs_gdc_realn.bam 62083337377 BAM harmonized CPTAC3 3519a923-e879-45d2-bfc1-1d76f173d915 f97dbae7e240e87b1d1f797cf685b555 {"aliquot_tag": "ALQ_b253cf3e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01844.miRNA-Seq.S14_L001_R1.A C3N-01844 CM miRNA-Seq tissue_normal CPT0098440013 221118_UNC51-VH00562_156_AAAV2MKHV_CAGGCG_S14_L001_R1_001.unaln.bam 474400044 BAM S14_L001_R1 submitted_unaligned CPTAC3 6ee3e9ef-1e13-460b-a708-6ae66663d6cf b5a29cadb9d1345ef29920bb43d16652 {"aliquot_tag": "ALQ_da648eac", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-01844.miRNA-Seq.S27_L001_R1.T C3N-01844 CM miRNA-Seq tumor CPT0098430009 221111_UNC51-VH00562_151_AAATWY5HV_CTTGTA_S27_L001_R1_001.unaln.bam 154425627 BAM S27_L001_R1 submitted_unaligned CPTAC3 7fa50ee0-0684-4813-9d1d-5698d187811b 1e1f8dae239a32ae38f34cc8d3f3450b {"aliquot_tag": "ALQ_918a8ae3", "sample": "S27", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01846.MethArray.Green.A C3N-01846 LSCC Methylation_Array tissue_normal CPT0098800009 203219650004_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 6ec2cd5d-4f83-4ec5-b400-2f0b0a3d89bb a03387dca8937bf2ccae8bf84c73ebb7 {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01846.MethArray.Green.T C3N-01846 LSCC Methylation_Array tumor CPT0098770009 202234370091_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 ae46c687-b113-4f55-ae20-3120bba5f75b b041ea28087bda0cb3c9c34410ef324a {"aliquot_tag": "ALQ_e29e5e8d", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01846.MethArray.Red.A C3N-01846 LSCC Methylation_Array tissue_normal CPT0098800009 203219650004_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 586a946c-697a-4760-992a-ba355e2771f7 1d7523ec2e6195015757b14cf96272ef {"aliquot_tag": "ALQ_a1e83048", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -30063,6 +30178,8 @@ C3N-02015.WXS.N C3N-02015 CCRCC WXS blood_normal CPT0116350002 CPT0116350002.Who C3N-02015.WXS.N.hg38 C3N-02015 CCRCC WXS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wxs_gdc_realn.bam 45895765263 BAM harmonized CPTAC3 ac34ed55-1ecb-42d9-8f6e-62f481a84ffa 389c2daa417abce3e1c24a3a14b651b5 {"aliquot_tag": "ALQ_bce2d8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-02015.WXS.T C3N-02015 CCRCC WXS tumor CPT0115350009 CPT0115350009.WholeExome.RP-1303.bam 23113584357 BAM submitted_aligned CPTAC3 34535d65-9338-4186-a33c-8b91319f01aa 1d10078745ad3798f65403fac6e95c0d {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02015.WXS.T.hg38 C3N-02015 CCRCC WXS tumor CPT0115350009 51501cd8-6fd3-4be0-8012-0360affa0519_wxs_gdc_realn.bam 30882516573 BAM harmonized CPTAC3 be150359-5e01-407b-9b7f-6e1c074e10db 1cd6e40d1d0641915066620fe0fe420b {"aliquot_tag": "ALQ_a68621cd", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02026.miRNA-Seq.S11_L001_R1.A C3N-02026 CM miRNA-Seq tissue_normal CPT0133250008 221111_UNC51-VH00562_151_AAATWY5HV_CAACTA_S11_L001_R1_001.unaln.bam 439159314 BAM S11_L001_R1 submitted_unaligned CPTAC3 3fcf1400-2384-4da0-aace-a52588a6666d 4305885b851a68a3a6da819f22aa3615 {"aliquot_tag": "ALQ_3b28f0b9", "sample": "S11", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02026.miRNA-Seq.S34_L001_R1.T C3N-02026 CM miRNA-Seq tumor CPT0133230006 221111_UNC51-VH00562_151_AAATWY5HV_GTAGAG_S34_L001_R1_001.unaln.bam 405496583 BAM S34_L001_R1 submitted_unaligned CPTAC3 27ff7b29-02e2-47ce-9db7-6a045ae1197a c8fb24811e1ffe15b4b78e3a91acc295 {"aliquot_tag": "ALQ_53d0281e", "sample": "S34", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02027.MethArray.Green.T C3N-02027 UCEC Methylation_Array tumor CPT0133400011 203561450017_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bd6816d9-665b-4f88-b95c-6822d046b682 571bbbab048733225213ec06067d0cde {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02027.MethArray.Red.T C3N-02027 UCEC Methylation_Array tumor CPT0133400011 203561450017_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a448da82-b138-478c-94bf-a5785f24ad76 b9322a2c9ef267921ebcfee171a4ea4b {"aliquot_tag": "ALQ_45561531", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02027.miRNA-Seq.S4_L003_R1.T C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L003_R1_001.unaln.bam 267214195 BAM S4_L003_R1 submitted_unaligned CPTAC3 d62d9a02-c8ae-4dcd-a89a-8c1e542611ea 89190d59d0471cebb1e3254d96d80f15 {"aliquot_tag": "ALQ_353ce1be", "sample": "S4", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -30195,6 +30312,7 @@ C3N-02030.WXS.N C3N-02030 UCEC WXS blood_normal CPT0133880002 CPT0133880002.Whol C3N-02030.WXS.N.hg38 C3N-02030 UCEC WXS blood_normal CPT0133880002 138b1cf0-0ac2-46d6-b211-35060de01e80_wxs_gdc_realn.bam 29542764494 BAM harmonized CPTAC3 c7442e46-9519-440d-b825-b49991b0afd2 afa84aa7ee2175e4fad9d4dd4796f77c {"aliquot_tag": "ALQ_82f6fe70", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-02030.WXS.T C3N-02030 UCEC WXS tumor CPT0133770011 CPT0133770011.WholeExome.RP-1303.bam 26277217133 BAM submitted_aligned CPTAC3 9eb871bc-f6e1-4ded-ba2c-e208a32b0220 bdd33fa830733cff58f5f4f6ccf30b2e {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02030.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133770011 a81443de-b861-4bb8-ab23-501062de441f_wxs_gdc_realn.bam 37279872369 BAM harmonized CPTAC3 439aba9f-6e4b-45c4-ba30-785dabaf1d23 0a6a7483b050e7be7b1e7c0046a9f408 {"aliquot_tag": "ALQ_71e2bb8f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02033.miRNA-Seq.S35_L001_R1.T C3N-02033 CM miRNA-Seq tumor CPT0133960006 221111_UNC51-VH00562_151_AAATWY5HV_GTCCGC_S35_L001_R1_001.unaln.bam 400235224 BAM S35_L001_R1 submitted_unaligned CPTAC3 9360fcc4-172f-4bff-97a8-8c76ac1552c0 a2158b8fca0dcd0a9efdf1fbf0a8d597 {"aliquot_tag": "ALQ_f1f757ad", "sample": "S35", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02061.MethArray.Green.T C3N-02061 UCEC Methylation_Array tumor CPT0134310011 203561450046_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 02d973a2-8f47-4edd-8f95-6f3b99c0a2d5 8aac8ced04423a898b71af6fc2de0e98 {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02061.MethArray.Red.T C3N-02061 UCEC Methylation_Array tumor CPT0134310011 203561450046_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 89b1ec19-aa2e-4e6a-aab4-064c998b3e7c 92d6789381ec5e092c57d3ba9bc0871f {"aliquot_tag": "ALQ_a09432b7", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02061.miRNA-Seq.S39_L004_R1.T C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L004_R1_001.unaln.bam 255391443 BAM S39_L004_R1 submitted_unaligned CPTAC3 04a69e12-15b8-44bd-b73f-c2607651671d 11fa6e1dcf54163807ed2928328ce156 {"aliquot_tag": "ALQ_d9488a13", "sample": "S39", "lane": "L004", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -31636,6 +31754,8 @@ C3N-02266.WXS.N C3N-02266 CCRCC WXS blood_normal CPT0188970002 CPT0188970002.Who C3N-02266.WXS.N.hg38 C3N-02266 CCRCC WXS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wxs_gdc_realn.bam 41022813328 BAM harmonized CPTAC3 504592ce-cb29-4aa8-ad82-fe315e661ff1 972d2a6089d4e48a2295a3276e8492e4 {"aliquot_tag": "ALQ_9497f2a8", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-02266.WXS.T C3N-02266 CCRCC WXS tumor CPT0188950006 CPT0188950006.WholeExome.RP-1303.bam 20392433151 BAM submitted_aligned CPTAC3 89373a12-c0c1-48a8-81c3-c9e0ca0165ca d886952273eda1c13d91faf2696e1883 {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02266.WXS.T.hg38 C3N-02266 CCRCC WXS tumor CPT0188950006 df1cc5c1-ec09-4329-b682-02cfe897e8af_wxs_gdc_realn.bam 28342817972 BAM harmonized CPTAC3 874e7360-bb66-4e48-a7e2-1f27c92dfd9d dd989f94e93021335c780805d29bfbea {"aliquot_tag": "ALQ_e93a65d1", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02270.miRNA-Seq.S10_L001_R1.A C3N-02270 CM miRNA-Seq tissue_normal CPT0182650008 221118_UNC51-VH00562_156_AAAV2MKHV_CACCGG_S10_L001_R1_001.unaln.bam 423922421 BAM S10_L001_R1 submitted_unaligned CPTAC3 e669d928-e8fe-4495-94e6-58603f5f01af e3f7d7f1eadcf73ab2c8ff70ee8a433b {"aliquot_tag": "ALQ_5ba4a54d", "sample": "S10", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02270.miRNA-Seq.S17_L001_R1.T C3N-02270 CM miRNA-Seq tumor CPT0182610010 221111_UNC51-VH00562_151_AAATWY5HV_CATGGC_S17_L001_R1_001.unaln.bam 294091582 BAM S17_L001_R1 submitted_unaligned CPTAC3 d51673b9-ee71-4776-9f8c-99771ac1811e f4718f861c466b5e4c43b53a507930f4 {"aliquot_tag": "ALQ_b9e4bafe", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02271.MethArray.Green.T C3N-02271 UCEC Methylation_Array tumor CPT0181670011 203561450073_R05C01_Grn.idat 13676221 IDAT Green NA CPTAC3 5a44cb62-b701-4772-a9c7-7e6915066ae5 cd99041eae6d48f9067947a53734760e {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02271.MethArray.Red.T C3N-02271 UCEC Methylation_Array tumor CPT0181670011 203561450073_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 2baf4c42-6876-4aac-ab8a-206980f61fe2 521e6dc2546623e8c296995c1174dd83 {"aliquot_tag": "ALQ_704b6555", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02271.miRNA-Seq.S8_L003_R1.T C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 198650312 BAM S8_L003_R1 submitted_unaligned CPTAC3 65f39fa3-a13c-4621-8c2c-d5875f83873c 56794a0cc9d68ee326e6ce4343e6c5e4 {"aliquot_tag": "ALQ_2191da", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -32080,6 +32200,12 @@ C3N-02302.WXS.N C3N-02302 UCEC WXS blood_normal CPT0181660002 CPT0181660002.Whol C3N-02302.WXS.N.hg38 C3N-02302 UCEC WXS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wxs_gdc_realn.bam 35013630318 BAM harmonized CPTAC3 fd647e79-8bf9-4737-a55b-a0fb81c19af3 7c0aa4d84030551261e7905908f34674 {"aliquot_tag": "ALQ_cd392c1e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-02302.WXS.T C3N-02302 UCEC WXS tumor CPT0181610006 CPT0181610006.WholeExome.RP-1303.bam 30335238761 BAM submitted_aligned CPTAC3 b99e9f73-9aff-4668-9181-57552b31c1d5 a20cb11ad7c098959699005aba2a3e48 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02302.WXS.T.hg38 C3N-02302 UCEC WXS tumor CPT0181610006 98562991-cf38-4173-90dd-518f188a593c_wxs_gdc_realn.bam 41216687611 BAM harmonized CPTAC3 62490e1e-a3cf-4ab2-950a-feb37dca2428 d0fe6d15f72b5f1145a8ee172ce2ab99 {"aliquot_tag": "ALQ_78743417", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02324.miRNA-Seq.S36_L001_R1.T C3N-02324 CM miRNA-Seq tumor CPT0135040006 221111_UNC51-VH00562_151_AAATWY5HV_GTGAAA_S36_L001_R1_001.unaln.bam 451311981 BAM S36_L001_R1 submitted_unaligned CPTAC3 8172e7ad-f940-41d3-b33f-d3457528467e 4c2a15ddcf3fbe11874faab4ce4fa15c {"aliquot_tag": "ALQ_cfe8603f", "sample": "S36", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02324.miRNA-Seq.S7_L001_R1.A C3N-02324 CM miRNA-Seq tissue_normal CPT0135050009 221111_UNC51-VH00562_151_AAATWY5HV_ATGAGC_S7_L001_R1_001.unaln.bam 445034997 BAM S7_L001_R1 submitted_unaligned CPTAC3 e2a3406d-34a5-4e73-baff-bb056f4460e1 30934103015e2b26fa07b48943e3cbb3 {"aliquot_tag": "ALQ_6237541e", "sample": "S7", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02327.miRNA-Seq.S15_L001_R1.A C3N-02327 CM miRNA-Seq tissue_normal CPT0135410016 221118_UNC51-VH00562_156_AAAV2MKHV_CATGGC_S15_L001_R1_001.unaln.bam 340974809 BAM S15_L001_R1 submitted_unaligned CPTAC3 5466a6dc-bdbb-4586-8170-08e9b8c96802 1bca6ffd59fa1269f9ac4168475b4be2 {"aliquot_tag": "ALQ_85829c18", "sample": "S15", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02327.miRNA-Seq.S37_L001_R1.T C3N-02327 CM miRNA-Seq tumor CPT0135380006 221111_UNC51-VH00562_151_AAATWY5HV_GTGGCC_S37_L001_R1_001.unaln.bam 390417751 BAM S37_L001_R1 submitted_unaligned CPTAC3 e4391e43-b561-42bd-8721-b3a38031bcec 646eadc4bec82df31dc80dc9bf934ebf {"aliquot_tag": "ALQ_8c8cff90", "sample": "S37", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02330.miRNA-Seq.S16_L001_R1.A C3N-02330 CM miRNA-Seq tissue_normal CPT0135590016 221118_UNC51-VH00562_156_AAAV2MKHV_CATTTT_S16_L001_R1_001.unaln.bam 441454101 BAM S16_L001_R1 submitted_unaligned CPTAC3 6deffb73-5a8f-4923-80a3-fb868bcdf89e 3c1d42753a791456e008333cc109efeb {"aliquot_tag": "ALQ_7eae047c", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02330.miRNA-Seq.S38_L001_R1.T C3N-02330 CM miRNA-Seq tumor CPT0135580006 221111_UNC51-VH00562_151_AAATWY5HV_GTTTCG_S38_L001_R1_001.unaln.bam 277157432 BAM S38_L001_R1 submitted_unaligned CPTAC3 afd33ab0-fd5d-4889-ba64-aeba0e4b1d3d 06c90050cfefb680deae9aaab185d23a {"aliquot_tag": "ALQ_5ad51c8d", "sample": "S38", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02332.MethArray.Green.A C3N-02332 CCRCC Methylation_Array tissue_normal CPT0135770006 204930640023_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 8683a2cb-5458-4355-b3a6-9541822cd013 afd757abd708c0c757c23275f33ae2bc {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-02332.MethArray.Green.T C3N-02332 CCRCC Methylation_Array tumor CPT0135740009 203219650165_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b382c73b-0730-487f-a4a4-a7fa3408b500 3f15bad7889a38997304e00c96e8d0cc {"aliquot_tag": "ALQ_42524d16", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02332.MethArray.Red.A C3N-02332 CCRCC Methylation_Array tissue_normal CPT0135770006 204930640023_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 8d6cab79-1f79-4ed1-9a0f-f67903b32276 a0ec64a3c9b9f342090020f598bf74ca {"aliquot_tag": "ALQ_954d2a57", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -32146,6 +32272,8 @@ C3N-02333.WXS.N C3N-02333 HNSCC WXS blood_normal CPT0176950002 CPT0176950002.Who C3N-02333.WXS.N.hg38 C3N-02333 HNSCC WXS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wxs_gdc_realn.bam 28521597659 BAM harmonized CPTAC3 b27bdd4f-652e-4c26-9c10-92a9e51cedb9 fe29b1d82fb204b4961edcacff4616fc {"aliquot_tag": "ALQ_6748c839", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-02333.WXS.T C3N-02333 HNSCC WXS tumor CPT0176770006 CPT0176770006.WholeExome.RP-1303.bam 18192271782 BAM submitted_aligned CPTAC3 a86dff36-1d9b-4fe0-a07e-da55f7064b7d 4437e8eae23bc19371662a004676aee6 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02333.WXS.T.hg38 C3N-02333 HNSCC WXS tumor CPT0176770006 e319056e-8929-40c5-b74c-744c257ea260_wxs_gdc_realn.bam 25718151290 BAM harmonized CPTAC3 3671fdbb-5149-4803-b53d-2ae48e4c31a8 7926bca3f1d5c150a59f9f30bf111c35 {"aliquot_tag": "ALQ_20ef3e30", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02335.miRNA-Seq.S12_L001_R1.A C3N-02335 CM miRNA-Seq tissue_normal CPT0136120006 221111_UNC51-VH00562_151_AAATWY5HV_CACCGG_S12_L001_R1_001.unaln.bam 405999696 BAM S12_L001_R1 submitted_unaligned CPTAC3 3e144e45-23de-4829-b652-4c14263c5d3c 0fc89d36933a5f3701ac77406fd50e32 {"aliquot_tag": "ALQ_ba1c5ca7", "sample": "S12", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-02335.miRNA-Seq.S20_L001_R1.T C3N-02335 CM miRNA-Seq tumor CPT0136100006 221111_UNC51-VH00562_151_AAATWY5HV_CCGTCC_S20_L001_R1_001.unaln.bam 419319724 BAM S20_L001_R1 submitted_unaligned CPTAC3 33061e67-a24c-4a5c-9608-f4bb77972dba 2078ca656d119cddffdc727c2473221b {"aliquot_tag": "ALQ_c0dc0fc7", "sample": "S20", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02337.MethArray.Green.T C3N-02337 UCEC Methylation_Array tumor CPT0136280006 203561620043_R04C01_Grn.idat 13676211 IDAT Green NA CPTAC3 d07f723e-c79d-407a-baa6-44d99b672090 4903e1d30390e9d4f21f986d30024372 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02337.MethArray.Red.T C3N-02337 UCEC Methylation_Array tumor CPT0136280006 203561620043_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 ef4bfbd6-9245-4616-845d-a2bf4a1bda0e 6c9f95502de0952023869dd3ffb02975 {"aliquot_tag": "ALQ_763836a8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02337.miRNA-Seq.S33_L002_R1.T C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L002_R1_001.unaln.bam 288135954 BAM S33_L002_R1 submitted_unaligned CPTAC3 fded1b9b-b12e-41ff-8a2f-598a443d5692 047ebd1a2429f0cf1a3706a5ec64d858 {"aliquot_tag": "ALQ_e6872b39", "sample": "S33", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -32237,6 +32365,7 @@ C3N-02372.WXS.N C3N-02372 UCEC WXS blood_normal CPT0137260002 CPT0137260002.Whol C3N-02372.WXS.N.hg38 C3N-02372 UCEC WXS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wxs_gdc_realn.bam 32772113930 BAM harmonized CPTAC3 4bcc4a59-d8f7-48ed-9e34-7fc5150895a4 95577e7b2931c44934780ecfcef611fd {"aliquot_tag": "ALQ_68124764", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-02372.WXS.T C3N-02372 UCEC WXS tumor CPT0137140011 CPT0137140011.WholeExome.RP-1303.bam 21927969322 BAM submitted_aligned CPTAC3 f515b7de-1bc2-457b-bfd6-9a433d078a17 af8b423249b864ceea0360d437a71b18 {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02372.WXS.T.hg38 C3N-02372 UCEC WXS tumor CPT0137140011 e3518070-0733-4f7e-b857-3bb3d89a8041_wxs_gdc_realn.bam 31108072202 BAM harmonized CPTAC3 8f994400-ef0d-491e-8f37-37240e866bde cff120c3f499ea1f65192a54475285ea {"aliquot_tag": "ALQ_14540651", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02373.miRNA-Seq.S19_L001_R1.A C3N-02373 CM miRNA-Seq tissue_normal CPT0176610009 221111_UNC51-VH00562_151_AAATWY5HV_CCAACA_S19_L001_R1_001.unaln.bam 518282153 BAM S19_L001_R1 submitted_unaligned CPTAC3 a1467cc3-364f-4383-a7ca-79f0390fd12a 97f30785b0391ccde8e5478dbb3fb130 {"aliquot_tag": "ALQ_f44c05a4", "sample": "S19", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-02374.MethArray.Green.A C3N-02374 LSCC Methylation_Array tissue_normal CPT0146400006 203219720176_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 74df72cf-abd8-4efd-af13-d216704cccd1 fc90754005b9c1a9bd6ea0d7b02169ad {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-02374.MethArray.Green.T C3N-02374 LSCC Methylation_Array tumor CPT0146380010 203219760081_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 1bac1a43-122f-4377-8140-9f50f111d8b2 00d30d033aff718aeb22e4e59827a62f {"aliquot_tag": "ALQ_47d97860", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02374.MethArray.Red.A C3N-02374 LSCC Methylation_Array tissue_normal CPT0146400006 203219720176_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 c7777fc9-ae90-45fc-8cea-1363ae2281d2 d03db61de8de70d652c557c9fb791362 {"aliquot_tag": "ALQ_9ad4976d", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -33364,6 +33493,7 @@ C3N-02632.WXS.N C3N-02632 UCEC WXS blood_normal CPT0182060002 CPT0182060002.Whol C3N-02632.WXS.N.hg38 C3N-02632 UCEC WXS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wxs_gdc_realn.bam 31765484234 BAM harmonized CPTAC3 ad81e092-13f4-445d-bf08-b5d1854f9c0d 6a608100865be107abb298b18ee1fc8a {"aliquot_tag": "ALQ_2a88d59e", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-02632.WXS.T C3N-02632 UCEC WXS tumor CPT0182020007 CPT0182020007.WholeExome.RP-1303.bam 22965123724 BAM submitted_aligned CPTAC3 f835131e-116e-40f9-93e8-1bfeadb98198 70f9b602b3d05c844d6580db23759791 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02632.WXS.T.hg38 C3N-02632 UCEC WXS tumor CPT0182020007 3e771046-4538-4fee-a130-0f28d72c7980_wxs_gdc_realn.bam 32031498465 BAM harmonized CPTAC3 19beb918-4541-47e8-a6d6-00316f87a698 99290500ab0ae74a8b21329367dc7f54 {"aliquot_tag": "ALQ_af6287d1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-02633.miRNA-Seq.S18_L001_R1.T C3N-02633 CM miRNA-Seq tumor CPT0182730009 221111_UNC51-VH00562_151_AAATWY5HV_CATTTT_S18_L001_R1_001.unaln.bam 508660789 BAM S18_L001_R1 submitted_unaligned CPTAC3 4aeb096c-df41-484a-ac37-008044dc7ea7 3de9295809bc12abb072684f139d6198 {"aliquot_tag": "ALQ_68bfb3de", "sample": "S18", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02635.MethArray.Green.T C3N-02635 UCEC Methylation_Array tumor CPT0182070007 203561620049_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9585049c-44a9-4b58-b111-f094ef70e6a9 0bd67aac22f5f612bff548f059e38431 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02635.MethArray.Red.T C3N-02635 UCEC Methylation_Array tumor CPT0182070007 203561620049_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 023ac084-13fd-400a-82fd-828a611cbd78 7eb27b987f2901526f7372523d47b5f2 {"aliquot_tag": "ALQ_678208a1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-02635.miRNA-Seq.S13_L001_R1.T C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 209090682 BAM S13_L001_R1 submitted_unaligned CPTAC3 10d4e0ce-d873-45ad-bee4-58e0759e6509 c354fee5285dcc87a45d91caaafd653c {"aliquot_tag": "ALQ_e0fdac43", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -35163,8 +35293,8 @@ C3N-02996.ANN_c487659e.RNA-Seq.S1_L005_R2.T C3N-02996 PDA RNA-Seq tumor CPT01878 C3N-02996.ANN_c487659e.RNA-Seq.transcriptome.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.transcriptome.gdc_realn.bam 13046097029 BAM transcriptome harmonized CPTAC3 3b2969fc-6ab7-4f49-ba4e-c4a83442c212 af87157d94e6f9b939baf9841e5d59f7 {"aliquot_tag": "ANN_c487659e", "aliquot_annotation": "PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02996.DUP_3d49bdc1.WXS.T C3N-02996 PDA WXS tumor CPT0187820033 CPT0187820033.WholeExome.RP-1303.bam 37486064868 BAM submitted_aligned CPTAC3 1af7be40-3009-47b4-81e0-63e1b75075e5 183d3999101070ee576cff2b4a0f2c5e {"aliquot_tag": "DUP_3d49bdc1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02996.DUP_3d49bdc1.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820033 6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM harmonized CPTAC3 ed5bb7bd-bedf-4585-9849-16526aae512a b3ff7e7c8215f8c438647c99389abe15 {"aliquot_tag": "DUP_3d49bdc1", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3N-02996.DUP_4a4e8d57.WXS.T C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM submitted_aligned CPTAC3 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3N-02996.DUP_4a4e8d57.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM harmonized CPTAC3 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_4a4e8d57.WXS.T C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM submitted_aligned CPTAC3 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-02996.DUP_4a4e8d57.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM harmonized CPTAC3 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 {"aliquot_tag": "DUP_4a4e8d57", "aliquot_annotation": "PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-02996.DUP_704360fe.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.chimeric.gdc_realn.bam 29257812 BAM chimeric harmonized CPTAC3 74b6605f-05f5-4a0e-8f44-d17fdb359651 32c31955a5511bd51b674e0914f48ccc {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-02996.DUP_704360fe.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.genomic.gdc_realn.bam 10586844730 BAM genomic harmonized CPTAC3 9862cc22-3c6f-4e16-a2e2-df1bb0cba663 822c4910e1ecccd31f020e31f13403a1 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-02996.DUP_704360fe.RNA-Seq.S18_L006_R1.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R1_001.fastq.gz 3979442144 FASTQ S18_L006_R1 submitted_unaligned CPTAC3 35391da6-589f-420c-80c5-de947f7a2045 80166282b9565b5861e50c3c280c02c0 {"aliquot_tag": "DUP_704360fe", "aliquot_annotation": "Duplicate item: PDA BioTEXT RNA", "sample": "S18", "lane": "L006", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -35643,6 +35773,7 @@ C3N-03028.WXS.N C3N-03028 HNSCC WXS blood_normal CPT0226480002 CPT0226480002.Who C3N-03028.WXS.N.hg38 C3N-03028 HNSCC WXS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wxs_gdc_realn.bam 29858297542 BAM harmonized CPTAC3 ef7578db-c8fe-41ce-be0c-25952fecf890 017e16bcb63b67f6ef56a2b102e615fd {"aliquot_tag": "ALQ_522b2df7", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03028.WXS.T C3N-03028 HNSCC WXS tumor CPT0226440006 CPT0226440006.WholeExome.RP-1303.bam 39315266074 BAM submitted_aligned CPTAC3 80210fb0-2021-4dcd-9cd3-f5d78b5952cf 4a057bdea8fae811e3ded1217c30863b {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03028.WXS.T.hg38 C3N-03028 HNSCC WXS tumor CPT0226440006 f055a2f7-3889-4c7b-baf8-bada9b7989b4_wxs_gdc_realn.bam 54333068229 BAM harmonized CPTAC3 1a5979f7-587a-4af6-b6a4-c05e13b2b793 df5a3fbfd64d47dccdea5505501fd181 {"aliquot_tag": "ALQ_90b604ef", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03029.miRNA-Seq.S13_L001_R1.T C3N-03029 CM miRNA-Seq tumor CPT0244570006 221117_UNC51-VH00562_155_AAAVL2YHV_CACGAT_S13_L001_R1_001.unaln.bam 332153653 BAM S13_L001_R1 submitted_unaligned CPTAC3 0ade3c1e-9337-4639-bbe2-b2a850874b84 f1a8f4e66cfd8a53a59248c6802c8e1a {"aliquot_tag": "ALQ_4dbab534", "sample": "S13", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03038.MethArray.Green.A C3N-03038 LUAD Methylation_Array tissue_normal CPT0235100006 203561620162_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9b860841-fcda-48d9-ab10-4418d5d828d0 337efaa37776721885e958e635c7cf2f {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03038.MethArray.Green.T C3N-03038 LUAD Methylation_Array tumor CPT0235090006 203561450048_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 be5b28a4-6810-4452-a705-2629a6501127 cfe13fa4f88ec51fa16dc1ed58a6c8d7 {"aliquot_tag": "ALQ_ef5984b", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03038.MethArray.Red.A C3N-03038 LUAD Methylation_Array tissue_normal CPT0235100006 203561620162_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 9207ab98-3d85-40d1-b964-f14bf3f57086 280f80d7917d317a239ee48fb09b23be {"aliquot_tag": "ALQ_c8b9299f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -36167,6 +36298,8 @@ C3N-03093.WXS.N C3N-03093 LSCC WXS blood_normal CPT0198000002 CPT0198000002.Whol C3N-03093.WXS.N.hg38 C3N-03093 LSCC WXS blood_normal CPT0198000002 b52dfbb4-71a1-40b5-8f03-56122d428afd_wxs_gdc_realn.bam 24048216533 BAM harmonized CPTAC3 5d1685ea-6990-4b65-8a0a-f612b53dd03e 65a6759081880d6fa53ab1cf9ce3acab {"aliquot_tag": "ALQ_cd127fee", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03093.WXS.T C3N-03093 LSCC WXS tumor CPT0197740006 CPT0197740006.WholeExome.RP-1303.bam 23000567980 BAM submitted_aligned CPTAC3 bc711fbc-735b-4755-8c0b-a34595670c6f 3b0828382716ab90952be0763b92892b {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03093.WXS.T.hg38 C3N-03093 LSCC WXS tumor CPT0197740006 ad027991-1119-4114-bd08-47af71ae25e5_wxs_gdc_realn.bam 31249136420 BAM harmonized CPTAC3 6655cf18-88ae-46c7-94bc-2124ee4ce094 36c5e0fcc95ab5758c67284cf10d8285 {"aliquot_tag": "ALQ_d4b25d66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03097.miRNA-Seq.S29_L001_R1.A C3N-03097 CM miRNA-Seq tissue_normal CPT0199090012 221117_UNC51-VH00562_155_AAAVL2YHV_GAGTGG_S29_L001_R1_001.unaln.bam 413162272 BAM S29_L001_R1 submitted_unaligned CPTAC3 9d789a81-3630-47bf-a8fd-d8e714f852af 3a9b255b0be982a1a3ff5ce96b7e4925 {"aliquot_tag": "ALQ_7f6e276a", "sample": "S29", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03097.miRNA-Seq.S46_L001_R1.T C3N-03097 CM miRNA-Seq tumor CPT0199050013 221111_UNC51-VH00562_151_AAATWY5HV_TCGGCA_S46_L001_R1_001.unaln.bam 358259243 BAM S46_L001_R1 submitted_unaligned CPTAC3 6ed02eb9-9a19-424a-b854-f0e952502755 b768a3b59507e1dc8ab5d2d5a1a4997f {"aliquot_tag": "ALQ_cd99fafd", "sample": "S46", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03173.MethArray.Green.A C3N-03173 PDA Methylation_Array tissue_normal CPT0186050007 203561450102_R07C01_Grn.idat 13676236 IDAT Green NA CPTAC3 35510f79-e226-409c-9b6c-fca0acdfc77b dd0429819d8954139f706fab3fe40564 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03173.MethArray.Green.T C3N-03173 PDA Methylation_Array tumor CPT0186040013 203561450014_R01C01_Grn.idat 13676217 IDAT Green NA CPTAC3 26107843-0e59-4a39-a10d-a2b48c6368a1 0d5d47e9afe2950b7ec6cd0487a1200d {"aliquot_tag": "ALQ_ca1ba33a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03173.MethArray.Red.A C3N-03173 PDA Methylation_Array tissue_normal CPT0186050007 203561450102_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 bca9c0cf-d5fc-411c-bdea-058785578fc5 8d8706e304e92d21df9249d8ddbc31b2 {"aliquot_tag": "ALQ_e90d7fd2", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -36482,6 +36615,8 @@ C3N-03212.WXS.N C3N-03212 LUAD WXS blood_normal CPT0185290002 CPT0185290002.Whol C3N-03212.WXS.N.hg38 C3N-03212 LUAD WXS blood_normal CPT0185290002 345b1b1e-842a-450c-9ba5-330000607de5_wxs_gdc_realn.bam 33789158956 BAM harmonized CPTAC3 fa381013-5ff5-432a-b485-f3b98073ff91 7e830898ca81a895f2db6a8650b28c28 {"aliquot_tag": "ALQ_20b7ddca", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03212.WXS.T C3N-03212 LUAD WXS tumor CPT0185230006 CPT0185230006.WholeExome.RP-1303.bam 23296727217 BAM submitted_aligned CPTAC3 5d02d4c8-fec0-4171-992d-baea6ae91e2f cbbd76f84da165c7842c8b6c523d1fbc {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03212.WXS.T.hg38 C3N-03212 LUAD WXS tumor CPT0185230006 68e8f36d-9fed-40d3-9f22-aa5be283c459_wxs_gdc_realn.bam 32388803944 BAM harmonized CPTAC3 0580be19-2fd3-49ab-83c0-38ff4c8ac752 80dd2b30aefb29cf9d85cbc0e2bc7cd4 {"aliquot_tag": "ALQ_6d6a0172", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03220.miRNA-Seq.S1_L001_R1.A C3N-03220 CM miRNA-Seq tissue_normal CPT0191040005 221117_UNC51-VH00562_155_AAAVL2YHV_ACAGTG_S1_L001_R1_001.unaln.bam 471781304 BAM S1_L001_R1 submitted_unaligned CPTAC3 7167c752-5196-4117-837a-870c7a302924 3ad06b2051582f4d435fb0db39139e30 {"aliquot_tag": "ALQ_336e095e", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03220.miRNA-Seq.S27_L001_R1.T C3N-03220 CM miRNA-Seq tumor CPT0191020018 221117_UNC51-VH00562_155_AAAVL2YHV_CTTGTA_S27_L001_R1_001.unaln.bam 165917614 BAM S27_L001_R1 submitted_unaligned CPTAC3 4ea30208-1f4e-478f-a3f6-bebf7d0c279c 069bd1d62913156c98e141e71923f373 {"aliquot_tag": "ALQ_db84b102", "sample": "S27", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03222.MethArray.Green.A C3N-03222 LUAD Methylation_Array tissue_normal CPT0179170005 203219640158_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e159bb9b-82fd-4aef-919a-decd1307b486 b38ccf51e72c611dcce2bc36543085c7 {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03222.MethArray.Green.T C3N-03222 LUAD Methylation_Array tumor CPT0179140006 203219640158_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 b14f313f-af22-41ca-860a-5a3e1067e602 a7e90dbde17da2cea67af41887330a1b {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03222.MethArray.Red.A C3N-03222 LUAD Methylation_Array tissue_normal CPT0179170005 203219640158_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 e5974f4a-fe28-44ed-9974-c3c1d5a3e21a cfdf661039dc39276e0ef0593130ff0e {"aliquot_tag": "ALQ_99f7fc7e", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -36510,6 +36645,8 @@ C3N-03222.WXS.N C3N-03222 LUAD WXS blood_normal CPT0179260002 CPT0179260002.Whol C3N-03222.WXS.N.hg38 C3N-03222 LUAD WXS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wxs_gdc_realn.bam 26466676969 BAM harmonized CPTAC3 8aeaf54e-abc6-4689-9cb7-0858bbbd8436 902619168518d33becfc907f8688a2d0 {"aliquot_tag": "ALQ_bc6732c3", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03222.WXS.T C3N-03222 LUAD WXS tumor CPT0179140006 CPT0179140006.WholeExome.RP-1303.bam 20396682125 BAM submitted_aligned CPTAC3 f5a0c84a-3d44-492c-aefd-137070ffc5e1 c2da9093c6320904e3af77dc66bda4d9 {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03222.WXS.T.hg38 C3N-03222 LUAD WXS tumor CPT0179140006 5af6b5ce-93f8-4a2a-8b20-1509cf2e82a7_wxs_gdc_realn.bam 29004977899 BAM harmonized CPTAC3 3a8ccbe9-b074-413b-bea9-14bef415088a 0a20a8688984027d6e44458bec941e3c {"aliquot_tag": "ALQ_475ed714", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03223.miRNA-Seq.S21_L001_R1.A C3N-03223 CM miRNA-Seq tissue_normal CPT0191420006 221117_UNC51-VH00562_155_AAAVL2YHV_CGATGT_S21_L001_R1_001.unaln.bam 522955227 BAM S21_L001_R1 submitted_unaligned CPTAC3 00904a62-b6fd-467c-9e70-f9c8347e9b64 ec7cd4b9c8c58de9530ebf340481ee9a {"aliquot_tag": "ALQ_beb6ef52", "sample": "S21", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03223.miRNA-Seq.S43_L001_R1.T C3N-03223 CM miRNA-Seq tumor CPT0191400013 221111_UNC51-VH00562_151_AAATWY5HV_TCATTC_S43_L001_R1_001.unaln.bam 197573493 BAM S43_L001_R1 submitted_unaligned CPTAC3 45a78e81-65d5-43c8-b394-d3ede8631b73 89ae6be526d3fab08d9e9c18ab8842d0 {"aliquot_tag": "ALQ_ad0779fc", "sample": "S43", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03225.MethArray.Green.A C3N-03225 LUAD Methylation_Array tissue_normal CPT0191600006 203561450073_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 a4580af6-d4d7-49f8-bdaf-81f7a7d05b18 f23dcd7cd679aa59f6fcd19b6a332f29 {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03225.MethArray.Green.T C3N-03225 LUAD Methylation_Array tumor CPT0191570006 203561620095_R05C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0373bffb-bda0-491e-bc67-cb21e33ee0b2 a0fd2eb9ba90259aeb9c9ec5a2b99d1f {"aliquot_tag": "ALQ_bd0ab387", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03225.MethArray.Red.A C3N-03225 LUAD Methylation_Array tissue_normal CPT0191600006 203561450073_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 8396c34e-d760-4b76-a76a-b19534f39015 bd8142a8800cbc36a4d742e1632678ca {"aliquot_tag": "ALQ_89be1d39", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -36569,6 +36706,9 @@ C3N-03226.WXS.N C3N-03226 HNSCC WXS blood_normal CPT0194530002 CPT0194530002.Who C3N-03226.WXS.N.hg38 C3N-03226 HNSCC WXS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wxs_gdc_realn.bam 34429694025 BAM harmonized CPTAC3 3c8cb21b-c84b-48da-b870-d4b941b0b530 764a81784415237014e48a0e0cfcd498 {"aliquot_tag": "ALQ_1ddffef9", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03226.WXS.T C3N-03226 HNSCC WXS tumor CPT0194420009 CPT0194420009.WholeExome.RP-1303.bam 23112506510 BAM submitted_aligned CPTAC3 5f61df23-b135-4421-a013-b86cc5ba0b1a 5ead4a9e7af1dc2c71d8bbbdd9677699 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03226.WXS.T.hg38 C3N-03226 HNSCC WXS tumor CPT0194420009 7664042d-ae27-4d60-9731-0c5cd47b6cce_wxs_gdc_realn.bam 31628258860 BAM harmonized CPTAC3 60017027-d9c3-4ef5-b9c2-199b29dacd42 684287a25d96769c078192b43b1765c3 {"aliquot_tag": "ALQ_7c31dd64", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03228.miRNA-Seq.S23_L001_R1.T C3N-03228 CM miRNA-Seq tumor CPT0180070009 221111_UNC51-VH00562_151_AAATWY5HV_CGTACG_S23_L001_R1_001.unaln.bam 296246407 BAM S23_L001_R1 submitted_unaligned CPTAC3 58c37261-213c-4897-8c36-83072017ef75 1de1f539b64fdc0086a5de8d559edd5e {"aliquot_tag": "ALQ_17a5348f", "sample": "S23", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03228.miRNA-Seq.S25_L001_R1.A C3N-03228 CM miRNA-Seq tissue_normal CPT0180080015 221111_UNC51-VH00562_151_AAATWY5HV_CTATAC_S25_L001_R1_001.unaln.bam 385653507 BAM S25_L001_R1 submitted_unaligned CPTAC3 eb3fd0b5-0dfc-4e8a-a1cc-b2b3d855eaca b2914ed0b255e69e7758739c0eb56a67 {"aliquot_tag": "ALQ_8558de34", "sample": "S25", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03229.miRNA-Seq.S29_L001_R1.T C3N-03229 CM miRNA-Seq tumor CPT0180240009 221111_UNC51-VH00562_151_AAATWY5HV_GAGTGG_S29_L001_R1_001.unaln.bam 374283433 BAM S29_L001_R1 submitted_unaligned CPTAC3 963a40f5-197d-4eb1-9a07-0e91d2480d3e 3d5a74285d86e3b577c57fe66d0328eb {"aliquot_tag": "ALQ_1dcdef54", "sample": "S29", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03233.MethArray.Green.A C3N-03233 LUAD Methylation_Array tissue_normal CPT0180740006 203219670118_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 9463f036-71cc-4aa2-8614-e122f0f75fee 40cccf21a5f323a8399060c4074c3b72 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03233.MethArray.Green.T C3N-03233 LUAD Methylation_Array tumor CPT0180730006 203220070156_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 3928f56b-ca25-4240-aaf7-6a28e3ab0c84 68179f5807a6f8fa5aeb4cf468e93fb3 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03233.MethArray.Red.A C3N-03233 LUAD Methylation_Array tissue_normal CPT0180740006 203219670118_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 db4c1c5c-c72a-46da-a44b-493d88b341ca d8c3ae1a0a89b2ea8a80ea7dfdbd1345 {"aliquot_tag": "ALQ_ddbf6376", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -36597,6 +36737,10 @@ C3N-03233.WXS.N C3N-03233 LUAD WXS blood_normal CPT0180830002 CPT0180830002.Whol C3N-03233.WXS.N.hg38 C3N-03233 LUAD WXS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wxs_gdc_realn.bam 29874282977 BAM harmonized CPTAC3 735636d7-7006-433a-b81d-203f334f2f80 a6ed7480ef78ca308fbd552cbb50577e {"aliquot_tag": "ALQ_99a4c9aa", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03233.WXS.T C3N-03233 LUAD WXS tumor CPT0180730006 CPT0180730006.WholeExome.RP-1303.bam 24112184013 BAM submitted_aligned CPTAC3 6a7062bb-1fe7-49f5-ba51-3e2f6a37804b 0690ad3a8edeeabb0ee031a62eb46958 {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03233.WXS.T.hg38 C3N-03233 LUAD WXS tumor CPT0180730006 c700325c-8aba-42cf-b647-18fa1c6f878c_wxs_gdc_realn.bam 32755281805 BAM harmonized CPTAC3 4b7d019f-7160-4856-8608-41bd5e46b5fc d87ffb1e702e6ef2ca9859b2836c761d {"aliquot_tag": "ALQ_6f9fbf66", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03234.miRNA-Seq.S17_L001_R1.A C3N-03234 CM miRNA-Seq tissue_normal CPT0180920013 221118_UNC51-VH00562_156_AAAV2MKHV_CCAACA_S17_L001_R1_001.unaln.bam 325791128 BAM S17_L001_R1 submitted_unaligned CPTAC3 a74f8076-6c1b-4a5b-92c1-2b074fb5956f 3f48468a3eb62da1276a2aacc6b8fd0b {"aliquot_tag": "ALQ_1843268", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03234.miRNA-Seq.S33_L001_R1.T C3N-03234 CM miRNA-Seq tumor CPT0180900009 221111_UNC51-VH00562_151_AAATWY5HV_GGTAGC_S33_L001_R1_001.unaln.bam 308118974 BAM S33_L001_R1 submitted_unaligned CPTAC3 b9750280-d8e4-4af4-8101-731bc563f72c 4a92acb7eaf705fc5da772810478daec {"aliquot_tag": "ALQ_828ab957", "sample": "S33", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03235.miRNA-Seq.S24_L001_R1.A C3N-03235 CM miRNA-Seq tissue_normal CPT0181100015 221111_UNC51-VH00562_151_AAATWY5HV_CTAGCT_S24_L001_R1_001.unaln.bam 460438244 BAM S24_L001_R1 submitted_unaligned CPTAC3 89a4af70-2b14-4d5d-97f5-1eb92737eb25 6a4a22d2a0df99ab9bee7fcda091d8bf {"aliquot_tag": "ALQ_d8034de4", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03235.miRNA-Seq.S45_L001_R1.T C3N-03235 CM miRNA-Seq tumor CPT0181090009 221111_UNC51-VH00562_151_AAATWY5HV_TCGAAG_S45_L001_R1_001.unaln.bam 393983228 BAM S45_L001_R1 submitted_unaligned CPTAC3 a24a6064-e65f-4443-80d5-58faa2668741 4fe73a4c68f8d42909a7bab997cd0dcc {"aliquot_tag": "ALQ_ee2815a", "sample": "S45", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03238.MethArray.Green.A C3N-03238 LUAD Methylation_Array tissue_normal CPT0193900006 203219650127_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 70a42f4f-5974-46ac-93ac-08ebd3ae2632 571d74a23b189af5d70a2111209c4c3b {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03238.MethArray.Green.T C3N-03238 LUAD Methylation_Array tumor CPT0193870006 203219650176_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 3746b636-3eb6-4782-9294-333dbf50635c 949104468114aa9b69f92546ee43547a {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03238.MethArray.Red.A C3N-03238 LUAD Methylation_Array tissue_normal CPT0193900006 203219650127_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 63d2fe67-2bd9-4b53-9638-904cfba17f53 6cc9eef137071db9a13848e6c5dd514f {"aliquot_tag": "ALQ_ef77bec5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -36625,6 +36769,8 @@ C3N-03238.WXS.N C3N-03238 LUAD WXS blood_normal CPT0193990002 CPT0193990002.Whol C3N-03238.WXS.N.hg38 C3N-03238 LUAD WXS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wxs_gdc_realn.bam 26469353781 BAM harmonized CPTAC3 fd74d144-b936-4a19-a6a9-1af6ca61581c 45603cd8cc26d0e711708f34921bc57e {"aliquot_tag": "ALQ_e50a18ad", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03238.WXS.T C3N-03238 LUAD WXS tumor CPT0193870006 CPT0193870006.WholeExome.RP-1303.bam 24392518025 BAM submitted_aligned CPTAC3 95944a7f-efe5-42bb-b776-efd4b7ca575a 1de5d81a37d4844a89f81167d9b4b9f4 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03238.WXS.T.hg38 C3N-03238 LUAD WXS tumor CPT0193870006 e8b4516b-888d-454a-b8c3-b13296ae60ed_wxs_gdc_realn.bam 33384403381 BAM harmonized CPTAC3 7767472c-1d11-470f-be44-aa4f7b476daa 72c5b18d7587b30dc55b79220d9fe728 {"aliquot_tag": "ALQ_960bb170", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03239.miRNA-Seq.S39_L001_R1.T C3N-03239 CM miRNA-Seq tumor CPT0194050014 221111_UNC51-VH00562_151_AAATWY5HV_TAATCG_S39_L001_R1_001.unaln.bam 464485167 BAM S39_L001_R1 submitted_unaligned CPTAC3 a5c3065f-8660-4364-8381-fdaeeecfb9ff e3df7eda80d465d5678fd14765fa6e56 {"aliquot_tag": "ALQ_322a0e9e", "sample": "S39", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03239.miRNA-Seq.S48_L001_R1.A C3N-03239 CM miRNA-Seq tissue_normal CPT0194080006 221117_UNC51-VH00562_155_AAAVL2YHV_TTAGGC_S48_L001_R1_001.unaln.bam 367466463 BAM S48_L001_R1 submitted_unaligned CPTAC3 b79f9309-d501-4562-a54b-157ad141df54 6f8cf1eb891946b8afdd749eae5f69f2 {"aliquot_tag": "ALQ_3daf9a42", "sample": "S48", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-03415.MethArray.Green.T C3N-03415 UCEC Methylation_Array tumor CPT0247910006 203561620091_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 cedbce9a-15c3-41f1-bc3f-97872fc2a4d0 2799d921c8d601c93388e5a61da3896a {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03415.MethArray.Red.T C3N-03415 UCEC Methylation_Array tumor CPT0247910006 203561620091_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 0d4d1d08-1478-4d72-8ef9-7b85805c8521 6f07a1cadff8616bc089922f67cc1544 {"aliquot_tag": "ALQ_84d09a72", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03415.miRNA-Seq.S6_L001_R1.T C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L001_R1_001.unaln.bam 200579286 BAM S6_L001_R1 submitted_unaligned CPTAC3 5f4b4196-dd3c-4529-8489-3eec2b246fba b66b7c7986a86e08f39778cef7594285 {"aliquot_tag": "ALQ_146f87e3", "sample": "S6", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -37059,6 +37205,8 @@ C3N-03458.WXS.N C3N-03458 HNSCC WXS blood_normal CPT0246710002 CPT0246710002.Who C3N-03458.WXS.N.hg38 C3N-03458 HNSCC WXS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wxs_gdc_realn.bam 32044180290 BAM harmonized CPTAC3 020efae6-7be3-43a3-9e6a-2b51324b1098 36853b50904c9da275cb23a5a88ec2f6 {"aliquot_tag": "ALQ_1fc034af", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03458.WXS.T C3N-03458 HNSCC WXS tumor CPT0246670006 CPT0246670006.WholeExome.RP-1303.bam 25574510496 BAM submitted_aligned CPTAC3 f62766ec-5d2c-4b87-8c0c-d992490468b8 749ceb07d8fc3ea49f112b4d8d54f5cc {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03458.WXS.T.hg38 C3N-03458 HNSCC WXS tumor CPT0246670006 65378d04-9290-4314-80ef-7fa63d18b0dc_wxs_gdc_realn.bam 35724000491 BAM harmonized CPTAC3 baad83c2-5991-4892-8503-d1b8a2f142eb 18a06aaff7e587bb4549de9d66cebcaf {"aliquot_tag": "ALQ_5cb1d6b3", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03460.miRNA-Seq.S4_L001_R1.T C3N-03460 CM miRNA-Seq tumor CPT0218760010 221117_UNC51-VH00562_155_AAAVL2YHV_AGTCAA_S4_L001_R1_001.unaln.bam 208200009 BAM S4_L001_R1 submitted_unaligned CPTAC3 4415d377-a417-40be-a4d9-ca9c58fdf184 bde594858179830fa7c98a0dd0c1b7be {"aliquot_tag": "ALQ_422acdeb", "sample": "S4", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03460.miRNA-Seq.S9_L001_R1.A C3N-03460 CM miRNA-Seq tissue_normal CPT0218820011 221117_UNC51-VH00562_155_AAAVL2YHV_ATTCCT_S9_L001_R1_001.unaln.bam 368939719 BAM S9_L001_R1 submitted_unaligned CPTAC3 81f14ff7-5768-4c73-84a5-4ffba4a5d8d1 06f2a78ccce3481912663d313aa75afc {"aliquot_tag": "ALQ_31fbe968", "sample": "S9", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-03473.MethArray.Green.T C3N-03473 GBM Methylation_Array tumor CPT0207090009 203220070156_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 e9e45a65-cf58-4c9a-9c52-6fa08957ae05 a174b16122b6a709de828e15d6364017 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03473.MethArray.Red.T C3N-03473 GBM Methylation_Array tumor CPT0207090009 203220070156_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 050debbd-3a69-4934-b17e-287ec39afaec 7a9ccd9666e8873603c2f4044ce85176 {"aliquot_tag": "ALQ_875a9310", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03473.miRNA-Seq.S17_L008_R1.T C3N-03473 GBM miRNA-Seq tumor CPT0207090013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L008_R1_001.unaln.bam 291905505 BAM S17_L008_R1 submitted_unaligned CPTAC3 862a751e-660a-4e52-b883-a75db29c282f 6fe2e09f4ed3613360ee0aba814a0593 {"aliquot_tag": "ALQ_7e944b4f", "sample": "S17", "lane": "L008", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -37270,6 +37418,10 @@ C3N-03612.WXS.N C3N-03612 HNSCC WXS blood_normal CPT0194890002 CPT0194890002.Who C3N-03612.WXS.N.hg38 C3N-03612 HNSCC WXS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wxs_gdc_realn.bam 64533653781 BAM harmonized CPTAC3 9fee90a3-69c8-4cb5-a684-36a0d45f8f68 b7d298a0d4b8ffdb6f963e11c18bde25 {"aliquot_tag": "ALQ_ebf1f586", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03612.WXS.T C3N-03612 HNSCC WXS tumor CPT0194790009 CPT0194790009.WholeExome.RP-1303.bam 27425976946 BAM submitted_aligned CPTAC3 a91c1718-e597-4f89-a449-ec22bfd0ca6c f8a25debbf95b6a1e352e93e4477465a {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03612.WXS.T.hg38 C3N-03612 HNSCC WXS tumor CPT0194790009 a52558dd-88b4-4bda-8c25-d3b87bde4163_wxs_gdc_realn.bam 37564844679 BAM harmonized CPTAC3 7af29814-e9b2-4176-a781-1bbbf56c249a 9c3dfe2140a530a7af458bce9a469cdb {"aliquot_tag": "ALQ_8d759edb", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03614.miRNA-Seq.S40_L001_R1.T C3N-03614 CM miRNA-Seq tumor CPT0194590014 221111_UNC51-VH00562_151_AAATWY5HV_TACAGC_S40_L001_R1_001.unaln.bam 353850068 BAM S40_L001_R1 submitted_unaligned CPTAC3 a4522502-eb7f-46c2-adbd-011d28a5bc5a d8edaf62dd4d00157c28eaafb393d85b {"aliquot_tag": "ALQ_a717722c", "sample": "S40", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03614.miRNA-Seq.S47_L001_R1.A C3N-03614 CM miRNA-Seq tissue_normal CPT0194620006 221117_UNC51-VH00562_155_AAAVL2YHV_TGACCA_S47_L001_R1_001.unaln.bam 513920011 BAM S47_L001_R1 submitted_unaligned CPTAC3 9944207d-db5e-49a4-9c5a-a248d96f287a 0d3c0b61f111e9cd4bd0be95547286f4 {"aliquot_tag": "ALQ_a14661fe", "sample": "S47", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03617.miRNA-Seq.S31_L001_R1.A C3N-03617 CM miRNA-Seq tissue_normal CPT0195340005 221117_UNC51-VH00562_155_AAAVL2YHV_GCCAAT_S31_L001_R1_001.unaln.bam 431827328 BAM S31_L001_R1 submitted_unaligned CPTAC3 5d47bbb0-745c-4478-b09a-a5b7e2f3f2fb d7a1f78b89c19af7fee85c69501e889f {"aliquot_tag": "ALQ_41b55fe3", "sample": "S31", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03617.miRNA-Seq.S32_L001_R1.T C3N-03617 CM miRNA-Seq tumor CPT0195330009 221117_UNC51-VH00562_155_AAAVL2YHV_GGCTAC_S32_L001_R1_001.unaln.bam 401030997 BAM S32_L001_R1 submitted_unaligned CPTAC3 d83dc696-c7d6-4532-b1eb-b2e79c6f450e d860bb5cbe3af5e9410ae4d29eb1187e {"aliquot_tag": "ALQ_fa23cfd8", "sample": "S32", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03619.MethArray.Green.A C3N-03619 HNSCC Methylation_Array tissue_normal CPT0195880008 203271750010_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 10f23dd1-36da-4afe-9b60-fd109e160a25 9b6ae0602c5bb55b0f80ae0dd4dc3255 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03619.MethArray.Green.T C3N-03619 HNSCC Methylation_Array tumor CPT0195860009 203271750010_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 faf62f22-f60d-45a1-a273-ecf225d11803 289045b69609f4d3c441d92bff997674 {"aliquot_tag": "ALQ_5804b06b", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03619.MethArray.Red.A C3N-03619 HNSCC Methylation_Array tissue_normal CPT0195880008 203271750010_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 e806a090-fd48-4f3f-be80-df9e8705332b 4941b4ab4edc832ffc75a9b723521667 {"aliquot_tag": "ALQ_90333e9c", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -37739,7 +37891,7 @@ C3N-03785.WXS.T.hg38 C3N-03785 HNSCC WXS tumor CPT0245680006 58d9cb22-cc39-4db7- C3N-03788.MethArray.Green.T C3N-03788 GBM Methylation_Array tumor CPT0457770011 206250290128_R07C01_Grn.idat 13677950 IDAT Green NA CPTAC3 cc55834b-f2a3-4144-b0af-39170068fc1d 4b145b2cdf0df816b97155059d34b878 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03788.MethArray.Red.T C3N-03788 GBM Methylation_Array tumor CPT0457770011 206250290128_R07C01_Red.idat 13677950 IDAT Red NA CPTAC3 c88b0907-bfc3-42fb-81d1-b8f069fc9c85 7ac51ce78eaa54f0509518b40ca3d1c3 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03788.miRNA-Seq.S8_L003_R1.T C3N-03788 GBM miRNA-Seq tumor CPT0457770008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTCAGA_S8_L003_R1_001.unaln.bam 381775024 BAM S8_L003_R1 submitted_unaligned CPTAC3 df8726e2-4517-4a7a-bdaf-9289ab6ad3f5 3ecb5f14597b720c4de18afc61cf8f8a {"aliquot_tag": "ALQ_69925ab1", "sample": "S8", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3N-03788.miRNA-Seq.T.hg38 C3N-03788 GBM miRNA-Seq tumor CPT0457770008 d8197cf6-869b-455b-b0ac-00d34a7e3eb6_mirnaseq_gdc_realn.bam 443353789 BAM harmonized CPTAC3 d4df0370-29b4-4b40-b64d-c07638d547b4 5ee687f137f09c2ce42fda76d035aa94 {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-03788.miRNA-Seq.T.hg38 C3N-03788 GBM miRNA-Seq tumor CPT0457770008 d8197cf6-869b-455b-b0ac-00d34a7e3eb6_mirnaseq_gdc_realn.bam 443353789 BAM harmonized CPTAC3 d4df0370-29b4-4b40-b64d-c07638d547b4 5ee687f137f09c2ce42fda76d035aa94 {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03788.RNA-Seq.chimeric.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.chimeric.gdc_realn.bam 796437541 BAM chimeric harmonized CPTAC3 ee80ea15-041b-44ee-9240-9bd2207ea2dd 2aa671cfb9e467689e93ec49093de3cb {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-03788.RNA-Seq.genomic.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.genomic.gdc_realn.bam 7373308494 BAM genomic harmonized CPTAC3 cfed8718-d98a-4b7a-bba2-7ca5fbbcfe9f c5988349f1b1ac85d9bcf8712fb07c34 {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-03788.RNA-Seq.S1_L006_R1.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R1_001.fastq.gz 3600988531 FASTQ S1_L006_R1 submitted_unaligned CPTAC3 384ad3cb-eafa-44e5-b6bd-6668d2cbf435 d4637272b0fb6f91adfeb3cb94b7525e {"aliquot_tag": "ALQ_69925ab1", "sample": "S1", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -38398,6 +38550,12 @@ C3N-03911.WXS.N C3N-03911 LUAD WXS blood_normal CPT0223730002 CPT0223730002.Whol C3N-03911.WXS.N.hg38 C3N-03911 LUAD WXS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wxs_gdc_realn.bam 38178162479 BAM harmonized CPTAC3 9c23156c-40b6-490b-a21f-6af4d6646f89 9a6598f1f87515692ddbeb2c8b7c819f {"aliquot_tag": "ALQ_f15741ef", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-03911.WXS.T C3N-03911 LUAD WXS tumor CPT0223610006 CPT0223610006.WholeExome.RP-1303.bam 30791088843 BAM submitted_aligned CPTAC3 66ce1f69-24e8-4ea9-90f0-7bcbbe426d3f 299ec3d5326f917b29d1bb238bb7cd38 {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03911.WXS.T.hg38 C3N-03911 LUAD WXS tumor CPT0223610006 cded8a7e-8a15-41a0-adbc-3816ad38d1a6_wxs_gdc_realn.bam 41580983977 BAM harmonized CPTAC3 d591f52c-a038-45c5-967a-d21e5e0512b0 87bdc8c20a50d18abc520876d12857ca {"aliquot_tag": "ALQ_47a60533", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-03913.miRNA-Seq.S30_L001_R1.T C3N-03913 CM miRNA-Seq tumor CPT0222900009 221117_UNC51-VH00562_155_AAAVL2YHV_GATCAG_S30_L001_R1_001.unaln.bam 415971130 BAM S30_L001_R1 submitted_unaligned CPTAC3 c5b475b2-63b2-4ef0-b3a0-b7fa9acbd4e4 c85c95a65a4628b1c08d0450234d190b {"aliquot_tag": "ALQ_bd588873", "sample": "S30", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03913.miRNA-Seq.S34_L001_R1.A C3N-03913 CM miRNA-Seq tissue_normal CPT0222920010 221117_UNC51-VH00562_155_AAAVL2YHV_GTAGAG_S34_L001_R1_001.unaln.bam 419168774 BAM S34_L001_R1 submitted_unaligned CPTAC3 7181f669-8339-4c9f-9093-e9654836ec0c ec210a2ee5804f4dc4cf214367f65da4 {"aliquot_tag": "ALQ_a75f52f6", "sample": "S34", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03916.miRNA-Seq.S3_L001_R1.T C3N-03916 CM miRNA-Seq tumor CPT0222550009 221117_UNC51-VH00562_155_AAAVL2YHV_ACTTGA_S3_L001_R1_001.unaln.bam 332127959 BAM S3_L001_R1 submitted_unaligned CPTAC3 6375290a-3162-49ba-9f8d-2a089725d0f1 12951e6be07ab443cf05dc55f89db7fe {"aliquot_tag": "ALQ_27ac778", "sample": "S3", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03916.miRNA-Seq.S8_L001_R1.A C3N-03916 CM miRNA-Seq tissue_normal CPT0222560009 221117_UNC51-VH00562_155_AAAVL2YHV_ATGTCA_S8_L001_R1_001.unaln.bam 357334342 BAM S8_L001_R1 submitted_unaligned CPTAC3 2751adec-3c4a-4f6b-a20e-0d28e6710095 6b3c0069d0c78dbb300743d967eebfb5 {"aliquot_tag": "ALQ_45dabda8", "sample": "S8", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03918.miRNA-Seq.S22_L001_R1.A C3N-03918 CM miRNA-Seq tissue_normal CPT0248720014 221118_UNC51-VH00562_156_AAAV2MKHV_CTAGCT_S22_L001_R1_001.unaln.bam 526513412 BAM S22_L001_R1 submitted_unaligned CPTAC3 25fa7fad-d705-4979-8e36-06433ef5ed73 8a24e18f5c5b1bcf3dd663178dba7664 {"aliquot_tag": "ALQ_f827a156", "sample": "S22", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-03918.miRNA-Seq.S45_L001_R1.T C3N-03918 CM miRNA-Seq tumor CPT0248690009 221117_UNC51-VH00562_155_AAAVL2YHV_TCGAAG_S45_L001_R1_001.unaln.bam 418695580 BAM S45_L001_R1 submitted_unaligned CPTAC3 5c9f830b-669b-43d1-a2d6-a6a993c7f503 00d7c277fdd3e4c02ef269a77e21058a {"aliquot_tag": "ALQ_23010e1e", "sample": "S45", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03921.MethArray.Green.A C3N-03921 LUAD Methylation_Array tissue_normal CPT0223280006 203561620064_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 6b081f18-298b-43b8-9742-bf971330da06 0278a1ec04760958ff43bd97c49f016a {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-03921.MethArray.Green.T C3N-03921 LUAD Methylation_Array tumor CPT0223260006 203561450018_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 c094bec8-9c06-44df-8826-d7051b8185b2 1f681b80b8821e8c29ced8d308184d51 {"aliquot_tag": "ALQ_6e179b35", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-03921.MethArray.Red.A C3N-03921 LUAD Methylation_Array tissue_normal CPT0223280006 203561620064_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 ab1fc338-7329-4011-a469-f565c66b2204 9edae40fc67947a9797bcfc02af676cb {"aliquot_tag": "ALQ_d1272554", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -38844,6 +39002,8 @@ C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.Whol C3N-04138.WXS.N.hg38 C3N-04138 LSCC WXS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wxs_gdc_realn.bam 40369608923 BAM harmonized CPTAC3 fb6ee426-38fc-461a-b08f-dc6ba3fc6d53 a54f7f11a203362d83a50770cd69383c {"aliquot_tag": "ALQ_eaac6c02", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3N-04138.WXS.T C3N-04138 LSCC WXS tumor CPT0331000007 CPT0331000007.WholeExome.RP-1303.bam 19694203636 BAM submitted_aligned CPTAC3 4d3904df-d98f-425b-902d-1d83fd6e3a1b 2083839e8ab1cbcbaa3b0c49bf5f9b9b {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04138.WXS.T.hg38 C3N-04138 LSCC WXS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wxs_gdc_realn.bam 27641153087 BAM harmonized CPTAC3 4cc82681-a96f-4cf5-88fb-17fe9301efc5 6f299b925e22a8609014f10e83f0319a {"aliquot_tag": "ALQ_97d6fafc", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-04142.miRNA-Seq.S17_L001_R1.T C3N-04142 CM miRNA-Seq tumor CPT0259180009 221117_UNC51-VH00562_155_AAAVL2YHV_CATGGC_S17_L001_R1_001.unaln.bam 242176415 BAM S17_L001_R1 submitted_unaligned CPTAC3 a981ae72-385f-4a29-b02f-a2a206f7e8fd 897af40b24c931dd3fd20564fe4b45b5 {"aliquot_tag": "ALQ_69b91c3c", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04142.miRNA-Seq.S33_L001_R1.A C3N-04142 CM miRNA-Seq tissue_normal CPT0259190006 221109_UNC51-VH00562_149_AAAV5CLHV_GGTAGC_S33_L001_R1_001.unaln.bam 347818014 BAM S33_L001_R1 submitted_unaligned CPTAC3 6ed0581b-0e53-48a3-889c-9fd701cb2f84 b0acf57e2b42754fe23d3627bbe9ec55 {"aliquot_tag": "ALQ_c466281d", "sample": "S33", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-04151.RNA-Seq.chimeric.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.chimeric.gdc_realn.bam 201299357 BAM chimeric harmonized CPTAC3 10305f60-0348-4c62-a527-ec17f842558d 33125b511db82795aab443c8deff3083 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04151.RNA-Seq.genomic.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.genomic.gdc_realn.bam 9613176271 BAM genomic harmonized CPTAC3 beeb8b6e-fa5f-4470-9b67-725b4831f61b 43a7a584c0ff42fed62b31ea091660f1 {"aliquot_tag": "ALQ_2d5ce63e", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04151.RNA-Seq.S40_R1.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R1_001.fastq.gz 5881869402 FASTQ S40_R1 submitted_unaligned CPTAC3 1d703603-8fb9-4fa5-b995-6c362b4c63bd 931204979bdfc0a588e7ba7a7e0de572 {"aliquot_tag": "ALQ_2d5ce63e", "sample": "S40", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -38908,6 +39068,8 @@ C3N-04155.WXS.N C3N-04155 LSCC WXS blood_normal CPT0223910002 CPT0223910002.Whol C3N-04155.WXS.N.hg38 C3N-04155 LSCC WXS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wxs_gdc_realn.bam 39803597688 BAM harmonized CPTAC3 e178ecd2-6264-4ec0-bc22-2c22db576e5f 08b90ed4c1f2fbf4e85acaf0ac939e90 {"aliquot_tag": "ALQ_b19d73ff", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-04155.WXS.T C3N-04155 LSCC WXS tumor CPT0223790006 CPT0223790006.WholeExome.RP-1303.bam 27432374996 BAM submitted_aligned CPTAC3 49b45954-a500-432c-8b5c-7fd92c2fa4c3 1f1938eb572b80275f85a563457888df {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-04155.WXS.T.hg38 C3N-04155 LSCC WXS tumor CPT0223790006 78718394-bc16-4c02-b49f-511db21da76c_wxs_gdc_realn.bam 38063383676 BAM harmonized CPTAC3 a4161921-2f2d-4c03-bada-17523cad8eb9 909adda042eedb6e0fa4c619e811742e {"aliquot_tag": "ALQ_bc8a9d57", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3N-04156.miRNA-Seq.S24_L001_R1.A C3N-04156 CM miRNA-Seq tissue_normal CPT0251020012 221118_UNC51-VH00562_156_AAAV2MKHV_CTCAGA_S24_L001_R1_001.unaln.bam 547406430 BAM S24_L001_R1 submitted_unaligned CPTAC3 2117234b-1239-487b-98ae-d72cf88644f7 e2291f82f6e526dcfddd51770607e6d6 {"aliquot_tag": "ALQ_55737196", "sample": "S24", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-04156.miRNA-Seq.S25_L001_R1.T C3N-04156 CM miRNA-Seq tumor CPT0251000007 221117_UNC51-VH00562_155_AAAVL2YHV_CTATAC_S25_L001_R1_001.unaln.bam 420966049 BAM S25_L001_R1 submitted_unaligned CPTAC3 97d53b0f-d2ae-4233-b8cd-e08489ac8416 ef227d97f866730881fa44ec09a925cf {"aliquot_tag": "ALQ_46c2e738", "sample": "S25", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04157.MethArray.Green.A C3N-04157 LUAD Methylation_Array tissue_normal CPT0251200006 203561620016_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 bbd9d62d-b19d-4fd4-857a-330a40e27d0c 2be2f030f2624136e3a42507472ca1af {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-04157.MethArray.Green.T C3N-04157 LUAD Methylation_Array tumor CPT0251180006 203561450048_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62534f25-a644-4082-86db-2fc888d983ef 31ba2cfad4a1293cb31ef36cd15f7bd7 {"aliquot_tag": "ALQ_cae94fca", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-04157.MethArray.Red.A C3N-04157 LUAD Methylation_Array tissue_normal CPT0251200006 203561620016_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 25304c76-afca-414c-aecb-10beecbb533f d6268f260ff0bc1e7fe15372f8af1e46 {"aliquot_tag": "ALQ_7c0d76a5", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -39332,6 +39494,8 @@ C3N-04288.RNA-Seq.genomic.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b92 C3N-04288.RNA-Seq.S56_R1.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ S56_R1 submitted_unaligned CPTAC3 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 56bad53ac19dd1f71bd6c2805eb57215 {"aliquot_tag": "ALQ_36d3412f", "sample": "S56", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04288.RNA-Seq.S56_R2.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ S56_R2 submitted_unaligned CPTAC3 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 552ba651ed1778af39bcd44d024bbf98 {"aliquot_tag": "ALQ_36d3412f", "sample": "S56", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04288.RNA-Seq.transcriptome.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.transcriptome.gdc_realn.bam 6327404540 BAM transcriptome harmonized CPTAC3 b18906aa-c9fa-4b98-8d86-781dd3abf6dd 76c48f78c8f261f1dd0404545fb19964 {"aliquot_tag": "ALQ_36d3412f", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04293.miRNA-Seq.S14_L001_R1.T C3N-04293 CM miRNA-Seq tumor CPT0244700006 221117_UNC51-VH00562_155_AAAVL2YHV_CACTCA_S14_L001_R1_001.unaln.bam 163106359 BAM S14_L001_R1 submitted_unaligned CPTAC3 8d0c14e5-7296-48fb-871c-560603d4af25 0e19788c9c6064410297e8668d15697f {"aliquot_tag": "ALQ_b252c82f", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-04294.miRNA-Seq.S16_L001_R1.T C3N-04294 CM miRNA-Seq tumor CPT0244730006 221117_UNC51-VH00562_155_AAAVL2YHV_CAGGCG_S16_L001_R1_001.unaln.bam 409162898 BAM S16_L001_R1 submitted_unaligned CPTAC3 69b98484-34e8-4a45-a514-e8fe9655bea6 2e096586cdcecb5a64c5386fbad664c2 {"aliquot_tag": "ALQ_f5f2b2ff", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04312.MethArray.Green.T C3N-04312 GBM Methylation_Array tumor CPT0285670006 204372030011_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66bf3820-3c75-417b-863f-86e0b1e44443 3f5ce1fad8fd5c4893cd42647606cca8 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04312.MethArray.Red.T C3N-04312 GBM Methylation_Array tumor CPT0285670006 204372030011_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 0d747cb9-cda6-4975-af25-5e0b39b351c7 67254b80bea4828ea03573eab55d48e8 {"aliquot_tag": "ALQ_3af6d961", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-04312.miRNA-Seq.S37_L002_R1.T C3N-04312 GBM miRNA-Seq tumor CPT0285670009 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 273660927 BAM S37_L002_R1 submitted_unaligned CPTAC3 e7f6effd-e817-4e2b-8c06-576689dab185 3db8326fa4fc6c21832b4c4dc62c531d {"aliquot_tag": "ALQ_aa49c4f0", "sample": "S37", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -40019,6 +40183,11 @@ C3N-05100.WXS.N C3N-05100 LSCC WXS blood_normal CPT0321700002 CPT0321700002.Whol C3N-05100.WXS.N.hg38 C3N-05100 LSCC WXS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wxs_gdc_realn.bam 52694556758 BAM harmonized CPTAC3 05fa94e1-da84-4597-97cb-63a97ddb857b 70107fb2e1cbfa8a153512ad98e9f8e0 {"aliquot_tag": "ALQ_36133e55", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} C3N-05100.WXS.T C3N-05100 LSCC WXS tumor CPT0321680006 CPT0321680006.WholeExome.RP-1303.bam 19296245113 BAM submitted_aligned CPTAC3 5be5ff5d-0747-4e96-af04-8826353653d4 ff4ee76a5bd934ed907e29bc5ed8e1c9 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05100.WXS.T.hg38 C3N-05100 LSCC WXS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wxs_gdc_realn.bam 26509937987 BAM harmonized CPTAC3 675f7e6d-bbea-44d5-9d78-5c14892feab7 84b0fcb3b2d9fbf89429d603221757b5 {"aliquot_tag": "ALQ_ca526228", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05101.miRNA-Seq.S14_L001_R1.T C3N-05101 CM miRNA-Seq tumor CPT0438320007 221103_UNC51-VH00562_145_AAAVKL3HV_CACTCA_S14_L001_R1_001.unaln.bam 431492600 BAM S14_L001_R1 submitted_unaligned CPTAC3 944c554c-6f4b-48ea-85e6-8c4714fab0a1 12412c211d5a4ce7df4bdcc43f049350 {"aliquot_tag": "ALQ_9a7bf328", "sample": "S14", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05101.miRNA-Seq.S41_L001_R1.A C3N-05101 CM miRNA-Seq tissue_normal CPT0438350011 221118_UNC51-VH00562_156_AAAV2MKHV_TCGAAG_S41_L001_R1_001.unaln.bam 582646525 BAM S41_L001_R1 submitted_unaligned CPTAC3 372e405b-595b-4e09-b327-e8defaf60da9 fc5c2d083a436a1ea9570fa2813f9944 {"aliquot_tag": "ALQ_d823bb4c", "sample": "S41", "lane": "L001", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} +C3N-05106.miRNA-Seq.S16_L001_R1.T C3N-05106 CM miRNA-Seq tumor CPT0438460006 221103_UNC51-VH00562_145_AAAVKL3HV_CAGGCG_S16_L001_R1_001.unaln.bam 436638030 BAM S16_L001_R1 submitted_unaligned CPTAC3 8d7befe6-b725-45f9-953f-74596c2f8c95 5c19d9e699be9cbaeedae1e179465b6f {"aliquot_tag": "ALQ_5f955c6", "sample": "S16", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05107.miRNA-Seq.S28_L001_R1.T C3N-05107 CM miRNA-Seq tumor CPT0438530009 221118_UNC51-VH00562_156_AAAV2MKHV_GGCTAC_S28_L001_R1_001.unaln.bam 530904188 BAM S28_L001_R1 submitted_unaligned CPTAC3 6fd2827b-9fe5-4bb5-ae56-4ba70707940e 599624388ea59ea25de1cd81db297ba4 {"aliquot_tag": "ALQ_96fa1482", "sample": "S28", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05108.miRNA-Seq.S17_L001_R1.T C3N-05108 CM miRNA-Seq tumor CPT0438590006 221103_UNC51-VH00562_145_AAAVKL3HV_CATGGC_S17_L001_R1_001.unaln.bam 460531135 BAM S17_L001_R1 submitted_unaligned CPTAC3 f1be0ed6-e3cd-4e35-a0df-37088c69b195 32f388ce1d1f735d02aabcec773d25bf {"aliquot_tag": "ALQ_4cf511b2", "sample": "S17", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05114.MethArray.Green.T C3N-05114 GBM Methylation_Array tumor CPT0375840007 204930640011_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1040482c-23f2-4f97-866d-a254e656776b 68d023004d6c9da2c31e41f9b1d0417c {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05114.MethArray.Red.T C3N-05114 GBM Methylation_Array tumor CPT0375840007 204930640011_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 586fbbda-3b4b-408b-866b-3580f9ae5566 d805011d60c2a087189977be59e8b37a {"aliquot_tag": "ALQ_fe00f4b8", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05114.miRNA-Seq.S3_L006_R1.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM S3_L006_R1 submitted_unaligned CPTAC3 b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 {"aliquot_tag": "ALQ_797f505a", "sample": "S3", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} @@ -40053,6 +40222,8 @@ C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal CPT0376440002 CPT0376440002.Whole C3N-05135.WXS.N.hg38 C3N-05135 GBM WXS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wxs_gdc_realn.bam 34914215861 BAM harmonized CPTAC3 98ae81ee-90ef-4c56-8a69-5c5b73fecfec d964c89e7489825f5bee2d3443060b98 {"aliquot_tag": "ALQ_c840dad1", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3N-05135.WXS.T C3N-05135 GBM WXS tumor CPT0376380005 CPT0376380005.WholeExome.RP-1303.bam 23767669742 BAM submitted_aligned CPTAC3 9ae07a67-852d-4882-bd82-b1567a9d411d f7c5c2da7aa083b3a973b0e96b4111fd {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05135.WXS.T.hg38 C3N-05135 GBM WXS tumor CPT0376380005 f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wxs_gdc_realn.bam 31921769918 BAM harmonized CPTAC3 e098c85d-4df0-4dfb-84e9-3bf91a4e3491 979be17975014a8e5f5f960338f107be {"aliquot_tag": "ALQ_8ed192cb", "gdc_sample_type": "Primary Tumor", "state": "validated"} +C3N-05623.miRNA-Seq.S29_L001_R1.T C3N-05623 CM miRNA-Seq tumor CPT0322580009 221109_UNC51-VH00562_149_AAAV5CLHV_GAGTGG_S29_L001_R1_001.unaln.bam 396350061 BAM S29_L001_R1 submitted_unaligned CPTAC3 9ae2e3c7-d0ab-409b-877c-1c3863851262 a8285d360fd616752a3ca5153ab842c8 {"aliquot_tag": "ALQ_ed91178a", "sample": "S29", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-05624.miRNA-Seq.S35_L001_R1.T C3N-05624 CM miRNA-Seq tumor CPT0322650009 221109_UNC51-VH00562_149_AAAV5CLHV_GTCCGC_S35_L001_R1_001.unaln.bam 357637232 BAM S35_L001_R1 submitted_unaligned CPTAC3 2a78261a-6f66-46bb-b73d-6806f17a9537 393e68d269c066c56f762c6a4934ff46 {"aliquot_tag": "ALQ_9395a195", "sample": "S35", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05629.MethArray.Green.A C3N-05629 LSCC Methylation_Array tissue_normal CPT0321770006 204372030090_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6b68145b-a296-4fab-8e94-f5f8d325faf7 607b624f10a0e5e83411f04c5aac528c {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"} C3N-05629.MethArray.Green.T C3N-05629 LSCC Methylation_Array tumor CPT0321760006 204367490066_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 543b66ab-9f4f-49d3-865e-e6cbafe9419a 4bc8903d923903e6cd7d14fe2168e384 {"aliquot_tag": "ALQ_be3e0fec", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-05629.MethArray.Red.A C3N-05629 LSCC Methylation_Array tissue_normal CPT0321770006 204372030090_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 a660e408-0bb5-45a3-b749-ea1709dd30b0 9d82b2850bada7be0d9751f1bc1b8532 {"aliquot_tag": "ALQ_835e265c", "gdc_sample_type": "Solid Tissue Normal", "state": "submitted"}