From 7b3f811fb5646b758bffb7ae168d99fbe0f55a8f Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Fri, 4 Nov 2022 14:27:24 -0500 Subject: [PATCH] Adding discovery of 6 new AML cases, run 11/5/22 * Work dir:/home/mwyczalk_test/Projects/CPTAC3/discover/discover.20221104 --- CPTAC3.Catalog.dat | 102 +++++++++++++++++++++++++++++++++++ CPTAC3.Demographics.dat | 9 +++- Catalog3/CPTAC3.Catalog3.tsv | 102 +++++++++++++++++++++++++++++++++++ 3 files changed, 212 insertions(+), 1 deletion(-) diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 828f643..5c6def6 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -19703,6 +19703,23 @@ C3L-07013.WXS.Nbc C3L-07013 AML WXS buccal_normal CPT0423740001 CPT0423740001.Wh C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM NA 6d83953f-9d59-45fd-9f1c-48d917f0efe9 b231d52d4e35190e27c55c85912f43b0 hg38 Buccal Cell Normal C3L-07013-51,C3L-07013-52,C3L-07013-53 C3L-07013.WXS.Tbm C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeExome.RP-1303.bam 25242973164 BAM NA 796241ec-a38a-4028-b621-343be77994c4 b10f96d90358bc9a98403a9f5b692bb0 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07013-54 C3L-07013.WXS.Tbm.hg38 C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wxs_gdc_realn.bam 35353671823 BAM NA 77b57be8-82b9-4fbd-94cf-cdb1624b219c 8fdf03515b5336f304ca3f5ea4eaa54a hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07013-54 +C3L-07019.MethArray.Green.Tbm C3L-07019 AML Methylation Array tumor_bone_marrow CPT0454330002 205987770157_R02C01_Grn.idat 13677885 IDAT Green 0db3e071-78c8-4e30-95a5-11b49e93a0cc 7904912771e62a84763ee57167768519 NA Primary Blood Derived Cancer - Bone Marrow C3L-07019-55 +C3L-07019.MethArray.Red.Tbm C3L-07019 AML Methylation Array tumor_bone_marrow CPT0454330002 205987770157_R02C01_Red.idat 13677885 IDAT Red e64d212b-e537-4f1a-abad-d28ba24e6473 0e3ce77b8876e914ddbab10ff0d38206 NA Primary Blood Derived Cancer - Bone Marrow C3L-07019-55 +C3L-07019.miRNA-Seq.Tbm C3L-07019 AML miRNA-Seq tumor_bone_marrow CPT0454340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L003_R1_001.unaln.bam 219119006 BAM NA 324c74f5-36b4-4df6-b428-eaad50769fd0 a1783320fd2b4d9e4e49ecc2326a4c2b NA Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.miRNA-Seq.Tbm.hg38 C3L-07019 AML miRNA-Seq tumor_bone_marrow CPT0454340002 77a2c7e2-9464-4f07-938e-c1126595e06a_mirnaseq_gdc_realn.bam 238778089 BAM NA 7bbf8caa-4fe0-4d01-aeb3-48e2c64ed4db 67339a9ef9acdae690d9ec2d6a370288 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.RNA-Seq.chimeric.Tbm.hg38 C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 2baad7f5-cd8f-4800-91d5-e013172580f6.rna_seq.chimeric.gdc_realn.bam 499770294 BAM chimeric d607cdb0-1aed-42e3-a610-10c4b6d2236f ef2e1160094db339fa5ac9919401baec hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.RNA-Seq.genomic.Tbm.hg38 C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 2baad7f5-cd8f-4800-91d5-e013172580f6.rna_seq.genomic.gdc_realn.bam 7762584348 BAM genomic 675dfeb6-f779-46ae-bb9f-9819613539d2 a5a891f0f84c99ff0361cf741a3aaa0f hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.RNA-Seq.R1.Tbm C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 220114_UNC32-K00270_0310_AHMWT5BBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3838679067 FASTQ NA f5b8d86a-0576-45f8-8a3c-d1924b5017bf 6bcc8beb2f831bdde116b00c74f2ba9b NA Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.RNA-Seq.R2.Tbm C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 220114_UNC32-K00270_0310_AHMWT5BBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4199560972 FASTQ NA 3627b3ad-a79d-4043-9786-42f687c86ee9 e775a8c290386d5a9ae9ac8df9b284fa NA Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.RNA-Seq.transcriptome.Tbm.hg38 C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 2baad7f5-cd8f-4800-91d5-e013172580f6.rna_seq.transcriptome.gdc_realn.bam 9092620398 BAM transcriptome e14f54bf-16b2-4be0-bcb3-5e84e34117e6 363179b760cda8f578b001cb5d718d3a hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07019-56 +C3L-07019.WGS.Nbc C3L-07019 AML WGS buccal_normal CPT0454430002 CPT0454430002.WholeGenome.RP-2158.bam 54511001718 BAM NA 719b7bb9-28ae-436b-9f08-6e277f433171 083c18c8dee5489dfd0a6fe9083eb4c7 hg19 Buccal Cell Normal C3L-07019-50,C3L-07019-51,C3L-07019-52,C3L-07019-53 +C3L-07019.WGS.Nbc.hg38 C3L-07019 AML WGS buccal_normal CPT0454430002 66fca7a6-95f8-4982-8ba6-e016beee43d0_wgs_gdc_realn.bam 163205863567 BAM NA 09d4f031-3639-4997-bd8d-47f40614406a fb53cb51923d11a7079e48655405504b hg38 Buccal Cell Normal C3L-07019-50,C3L-07019-51,C3L-07019-52,C3L-07019-53 +C3L-07019.WGS.Tbm C3L-07019 AML WGS tumor_bone_marrow CPT0454330002 CPT0454330002.WholeGenome.RP-2158.bam 44745738163 BAM NA 5e518699-6427-4666-a9f0-061757225d46 d482b2b5e00a59bb8bc25775f7eedcd8 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07019-55 +C3L-07019.WGS.Tbm.hg38 C3L-07019 AML WGS tumor_bone_marrow CPT0454330002 5ef159ef-6d4a-4492-ad20-f06620ec5393_wgs_gdc_realn.bam 132119114677 BAM NA a55724e7-05c0-4e12-8d3e-6efca4a88629 6ca86e885e6f861378469c4530b11391 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07019-55 +C3L-07019.WXS.Nbc C3L-07019 AML WXS buccal_normal CPT0454430002 CPT0454430002.WholeExome.RP-1303.bam 31055174524 BAM NA b95996cb-a693-49e6-b095-65f2bccce173 6657291d6928c86035867b463c658cd9 hg19 Buccal Cell Normal C3L-07019-50,C3L-07019-51,C3L-07019-52,C3L-07019-53 +C3L-07019.WXS.Nbc.hg38 C3L-07019 AML WXS buccal_normal CPT0454430002 66fca7a6-95f8-4982-8ba6-e016beee43d0_wxs_gdc_realn.bam 42197983317 BAM NA fd859c96-110c-404f-b830-598ebb95a224 c05387d10da2fbb7141bc5906bf3da8f hg38 Buccal Cell Normal C3L-07019-50,C3L-07019-51,C3L-07019-52,C3L-07019-53 +C3L-07019.WXS.Tbm C3L-07019 AML WXS tumor_bone_marrow CPT0454330002 CPT0454330002.WholeExome.RP-1303.bam 30911495011 BAM NA d5600216-becd-46fa-a456-68f5e937f691 bd2441b1afa0929ac87b9b6553ef9c86 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07019-55 +C3L-07019.WXS.Tbm.hg38 C3L-07019 AML WXS tumor_bone_marrow CPT0454330002 5ef159ef-6d4a-4492-ad20-f06620ec5393_wxs_gdc_realn.bam 43078287611 BAM NA 47829483-44ec-4b8f-ab01-31bec24a53e6 27380019bf75477b0b28f6fed70236f2 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07019-55 C3L-07032.RNA-Seq.chimeric.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.chimeric.gdc_realn.bam 63081382 BAM chimeric 85dfb5f6-65c3-49d5-bb1c-ebfe0dd3809d 18939ebe653af2d687acbe8238c6597f hg38 Solid Tissue Normal C3L-07032-01 C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.genomic.gdc_realn.bam 9498612665 BAM genomic f465ba1c-3234-48e7-91fd-fc11a79416d2 204a166fec8c019916e24e574a4cc2e4 hg38 Solid Tissue Normal C3L-07032-01 C3L-07032.RNA-Seq.R1.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ NA 88ba9750-4977-49cb-9058-c68e1b1b7570 d258562bc158932ff5f7cc321078289d NA Solid Tissue Normal C3L-07032-01 @@ -19792,6 +19809,23 @@ C3L-07437.WXS.Nbc C3L-07437 AML WXS buccal_normal CPT0409180001 CPT0409180001.Wh C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM NA 2d79233e-307d-4835-b070-47feba860d01 e724ce4313c17ac322eab79b779a608d hg38 Buccal Cell Normal C3L-07437-50,C3L-07437-51,C3L-07437-52 C3L-07437.WXS.Tpb C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeExome.RP-1303.bam 26091082341 BAM NA b620a304-20ec-44c8-adf0-6770dae68220 1913d52199f8e6e125716d0ecb3b2a45 hg19 Primary Blood Derived Cancer - Peripheral Blood C3L-07437-55 C3L-07437.WXS.Tpb.hg38 C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wxs_gdc_realn.bam 36014507825 BAM NA c030fb7f-77a4-4c1f-8a7e-06a6f91bef61 0aeed95744a8951c7e479c2e73f779f8 hg38 Primary Blood Derived Cancer - Peripheral Blood C3L-07437-55 +C3L-07438.MethArray.Green.Tbm C3L-07438 AML Methylation Array tumor_bone_marrow CPT0447860002 205705520145_R02C01_Grn.idat 13677885 IDAT Green e2e9eed3-cbc3-437d-826c-96ddf7517cfc 25d5e0f30fb108e1cb2eca0945b77c9d NA Primary Blood Derived Cancer - Bone Marrow C3L-07438-61 +C3L-07438.MethArray.Red.Tbm C3L-07438 AML Methylation Array tumor_bone_marrow CPT0447860002 205705520145_R02C01_Red.idat 13677885 IDAT Red 1d45490c-6267-4bb0-ada9-00be075b6dd9 cc22b1a331ac13a02e0698e640c5d4ae NA Primary Blood Derived Cancer - Bone Marrow C3L-07438-61 +C3L-07438.miRNA-Seq.Tbm C3L-07438 AML miRNA-Seq tumor_bone_marrow CPT0447870002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATGTCA_S27_L002_R1_001.unaln.bam 206324859 BAM NA d029bbd4-277f-4602-aa35-538018307211 8d4282a3ece194eb9090d192e36d2e2c NA Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.miRNA-Seq.Tbm.hg38 C3L-07438 AML miRNA-Seq tumor_bone_marrow CPT0447870002 88e6e201-eae3-4355-be87-ab47e1e355f5_mirnaseq_gdc_realn.bam 229902845 BAM NA e7b6dcf3-ecdd-4a26-bfd7-525782a9d303 75cebc1c7dc796fb27df326f19a3efb5 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.RNA-Seq.chimeric.Tbm.hg38 C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 f66ab176-54c6-4de0-898f-745a8824534d.rna_seq.chimeric.gdc_realn.bam 90458347 BAM chimeric 3a037256-7329-4aca-964c-7b36ebf256dd 97ca4c5307e5742eb90b5dd084bdf50c hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.RNA-Seq.genomic.Tbm.hg38 C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 f66ab176-54c6-4de0-898f-745a8824534d.rna_seq.genomic.gdc_realn.bam 8984756972 BAM genomic 2c191622-220b-43f5-9463-89a98e4070eb 7386eee42a9b4058d06cec8e5090b139 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.RNA-Seq.R1.Tbm C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 211207_UNC32-K00270_0306_BHMW5YBBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 3652960890 FASTQ NA dd4aae1f-4c30-43f4-89f5-904cefbc62b8 fd49163d3484239059ff16c5e065ae7c NA Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.RNA-Seq.R2.Tbm C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 211207_UNC32-K00270_0306_BHMW5YBBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 4297595755 FASTQ NA 3e4ad93a-45f9-45a0-b087-8190f75c6d6d cd3fe0d4a5884712902b39b33342562f NA Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.RNA-Seq.transcriptome.Tbm.hg38 C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 f66ab176-54c6-4de0-898f-745a8824534d.rna_seq.transcriptome.gdc_realn.bam 10436710376 BAM transcriptome 54587703-2fcc-42a0-87e6-01b8bfa92050 c817007ed42356cb4ec7c50f05edc564 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07438-62 +C3L-07438.WGS.Nbc C3L-07438 AML WGS buccal_normal CPT0447900002 CPT0447900002.WholeGenome.RP-2158.bam 47752411899 BAM NA 18bf017e-69c1-48a8-b98c-69e5905dda88 1fcfc8bf757a4b711752edd9e3c54b06 hg19 Buccal Cell Normal C3L-07438-50,C3L-07438-51,C3L-07438-52 +C3L-07438.WGS.Nbc.hg38 C3L-07438 AML WGS buccal_normal CPT0447900002 dd76fef5-8d08-4d6d-b3e8-6e3da3fefe8b_wgs_gdc_realn.bam 142378026331 BAM NA 4e91a1e3-f499-4f9e-8a3b-88fa524afcd5 2506a923d73d83b5693b43e10ada2da6 hg38 Buccal Cell Normal C3L-07438-50,C3L-07438-51,C3L-07438-52 +C3L-07438.WGS.Tbm C3L-07438 AML WGS tumor_bone_marrow CPT0447860002 CPT0447860002.WholeGenome.RP-2158.bam 52040243771 BAM NA 0dcf3d81-9faf-4518-aa8a-e95571e2b50d 549b92bc2c2a59cc7b873679e49adc8e hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07438-61 +C3L-07438.WGS.Tbm.hg38 C3L-07438 AML WGS tumor_bone_marrow CPT0447860002 f529979f-832f-41d2-91b5-5478e083a28d_wgs_gdc_realn.bam 151593031479 BAM NA 1c0ae29d-7e6c-4b71-b4f6-28aca5655a62 8a86b539d818f90992eeaf1ebe6bc5fc hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07438-61 +C3L-07438.WXS.Nbc C3L-07438 AML WXS buccal_normal CPT0447900002 CPT0447900002.WholeExome.RP-1303.bam 27962532719 BAM NA 0d6d7d60-93c6-436b-b7ce-7a71a38a0ebd c0d0723bda7bb398fd7336b94a039e4c hg19 Buccal Cell Normal C3L-07438-50,C3L-07438-51,C3L-07438-52 +C3L-07438.WXS.Nbc.hg38 C3L-07438 AML WXS buccal_normal CPT0447900002 dd76fef5-8d08-4d6d-b3e8-6e3da3fefe8b_wxs_gdc_realn.bam 37655857885 BAM NA bc7cc37e-99f4-496c-bf75-933da02323a5 e5964eb1f6cc847c1de1657eabcf9b8b hg38 Buccal Cell Normal C3L-07438-50,C3L-07438-51,C3L-07438-52 +C3L-07438.WXS.Tbm C3L-07438 AML WXS tumor_bone_marrow CPT0447860002 CPT0447860002.WholeExome.RP-1303.bam 24291661533 BAM NA d487479e-4906-4cb3-9a67-745b20099830 f71290c2eb54b8fc5ac4d6b2049de47b hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07438-61 +C3L-07438.WXS.Tbm.hg38 C3L-07438 AML WXS tumor_bone_marrow CPT0447860002 f529979f-832f-41d2-91b5-5478e083a28d_wxs_gdc_realn.bam 33615435840 BAM NA ae450a06-487a-4d89-b2dd-e8aac197f3d6 87de64c4a416b873be50d0d2b70b79bb hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07438-61 C3L-07439.MethArray.Green.Tpb C3L-07439 AML Methylation Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Grn.idat 13677900 IDAT Green 65eebb3e-2e03-41b2-824a-4d1a730a879e cc0da6c18aae8761eceb026dc0c0c63a NA Primary Blood Derived Cancer - Peripheral Blood C3L-07439-55 C3L-07439.MethArray.Red.Tpb C3L-07439 AML Methylation Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Red.idat 13677900 IDAT Red 24467b3c-6531-47aa-bcbf-9161bf286e16 77c0e440730e5be3d02b29c9ac9fd342 NA Primary Blood Derived Cancer - Peripheral Blood C3L-07439-55 C3L-07439.miRNA-Seq.Tpb C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L003_R1_001.unaln.bam 188685033 BAM NA 0d92688a-ace0-45e7-927e-256c262d8216 ef67e9ab1fbe0f329b17e02f9bbb2fad NA Primary Blood Derived Cancer - Peripheral Blood C3L-07439-56 @@ -19809,6 +19843,23 @@ C3L-07439.WXS.Nbc C3L-07439 AML WXS buccal_normal CPT0409330001 CPT0409330001.Wh C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM NA eed05d67-1bf7-436f-bfdb-b07dd6beb964 74e3e5d9c7c8ebf919257fe2ece95f1a hg38 Buccal Cell Normal C3L-07439-50,C3L-07439-51,C3L-07439-52 C3L-07439.WXS.Tpb C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeExome.RP-1303.bam 24945939921 BAM NA 57f58bb4-54c3-4331-a72d-67a0561eca98 07756efe1f1a96dcbb254fa31679d464 hg19 Primary Blood Derived Cancer - Peripheral Blood C3L-07439-55 C3L-07439.WXS.Tpb.hg38 C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wxs_gdc_realn.bam 34896018172 BAM NA c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30 2d1784670cc5931edb214cbbaeb5810a hg38 Primary Blood Derived Cancer - Peripheral Blood C3L-07439-55 +C3L-07488.MethArray.Green.Tbm C3L-07488 AML Methylation Array tumor_bone_marrow CPT0452520002 205705520145_R03C01_Grn.idat 13677885 IDAT Green b39ef819-23b2-43b7-8eb5-8dee6b9a0a83 a0d10f99c4274da4f5125de2810b6e86 NA Primary Blood Derived Cancer - Bone Marrow C3L-07488-54 +C3L-07488.MethArray.Red.Tbm C3L-07488 AML Methylation Array tumor_bone_marrow CPT0452520002 205705520145_R03C01_Red.idat 13677885 IDAT Red 2af118ea-c3b6-4ee1-94b5-4bf152412c3d 77f439c37f0fa2e42328b70abf0dc29a NA Primary Blood Derived Cancer - Bone Marrow C3L-07488-54 +C3L-07488.miRNA-Seq.Tbm C3L-07488 AML miRNA-Seq tumor_bone_marrow CPT0452530002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCCCGA_S19_L003_R1_001.unaln.bam 192970323 BAM NA 2ed3f584-aceb-48da-aa54-508cbd2d24a0 0bad7a417d2d853e72facadd5b4fe1c2 NA Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.miRNA-Seq.Tbm.hg38 C3L-07488 AML miRNA-Seq tumor_bone_marrow CPT0452530002 70d79104-24ab-488d-8080-a7c3acc9b2b8_mirnaseq_gdc_realn.bam 218632946 BAM NA 3cc648b2-31f0-4773-b188-3aae1aa2d1a3 61a41b8fce73ceb3bed16c79792abada hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.RNA-Seq.chimeric.Tbm.hg38 C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 339da8c5-1961-408e-bc07-d2637575bf72.rna_seq.chimeric.gdc_realn.bam 712896912 BAM chimeric d0c1a478-455a-4534-b7e8-4301119d7850 5c39ee77aac6c4c4dedb7b7e6d90bbfd hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.RNA-Seq.genomic.Tbm.hg38 C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 339da8c5-1961-408e-bc07-d2637575bf72.rna_seq.genomic.gdc_realn.bam 8501371680 BAM genomic 50389625-3e90-4e59-8eb5-e50fdd70a3c3 61168ca5fe2e11aafd62aa18434e6332 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.RNA-Seq.R1.Tbm C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4126283934 FASTQ NA e86414bc-3288-40f9-a858-010e2ff7ef05 97ceeda81a3d0c4ac5b33782c21ff763 NA Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.RNA-Seq.R2.Tbm C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 4563495112 FASTQ NA 438ae9e4-1702-4bb9-b39c-11eac5b1171c f1c06564af9b332dc427289dbd93509b NA Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.RNA-Seq.transcriptome.Tbm.hg38 C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 339da8c5-1961-408e-bc07-d2637575bf72.rna_seq.transcriptome.gdc_realn.bam 8841416663 BAM transcriptome fff1a739-35ad-4d3f-8b06-4022f068545a 6efe7c73eca31a04f6a7c3749027a30e hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07488-55 +C3L-07488.WGS.Nbc C3L-07488 AML WGS buccal_normal CPT0452480002 CPT0452480002.WholeGenome.RP-2158.bam 52592357094 BAM NA 52170c8c-65c4-4070-9be2-faaa5f42fbcb 7f6846f150043fb51deb9cf3c092f464 hg19 Buccal Cell Normal C3L-07488-50,C3L-07488-51,C3L-07488-52,C3L-07488-53 +C3L-07488.WGS.Nbc.hg38 C3L-07488 AML WGS buccal_normal CPT0452480002 c6f85b46-aaa2-49f1-ade3-c2fd53bf5597_wgs_gdc_realn.bam 189362753895 BAM NA 1866398c-fef4-4fd5-8866-b6bf19eab6fc bc58032ece8caeaad532534c651e120d hg38 Buccal Cell Normal C3L-07488-50,C3L-07488-51,C3L-07488-52,C3L-07488-53 +C3L-07488.WGS.Tbm C3L-07488 AML WGS tumor_bone_marrow CPT0452520002 CPT0452520002.WholeGenome.RP-2158.bam 48738145756 BAM NA 6600380a-166c-45ad-a576-3baa55e7ec4f d91b91368e0352048a6d7e0726b384e3 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07488-54 +C3L-07488.WGS.Tbm.hg38 C3L-07488 AML WGS tumor_bone_marrow CPT0452520002 820bd369-a70e-4ae8-a9dd-40a759cb5681_wgs_gdc_realn.bam 144875143524 BAM NA d54dc76a-b11b-48da-9082-789d663d0595 27966751c4cfefb4cc204352b064e15c hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07488-54 +C3L-07488.WXS.Nbc C3L-07488 AML WXS buccal_normal CPT0452480002 CPT0452480002.WholeExome.RP-1303.bam 21823337899 BAM NA a24e8c29-6518-4a59-8664-b40bacc3f79f 452dcdbbaa579d84a048df89a0718d26 hg19 Buccal Cell Normal C3L-07488-50,C3L-07488-51,C3L-07488-52,C3L-07488-53 +C3L-07488.WXS.Nbc.hg38 C3L-07488 AML WXS buccal_normal CPT0452480002 c6f85b46-aaa2-49f1-ade3-c2fd53bf5597_wxs_gdc_realn.bam 28867684342 BAM NA e8feacbe-f33f-4a81-a083-7f8943ab8acd 18d2bd101c0a5e596c53a8d9cacfbf67 hg38 Buccal Cell Normal C3L-07488-50,C3L-07488-51,C3L-07488-52,C3L-07488-53 +C3L-07488.WXS.Tbm C3L-07488 AML WXS tumor_bone_marrow CPT0452520002 CPT0452520002.WholeExome.RP-1303.bam 33602521717 BAM NA 9c1027e8-634f-4aa3-8b71-7828d824dfa2 7577c801f46568c7e82e8bb8316f6396 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07488-54 +C3L-07488.WXS.Tbm.hg38 C3L-07488 AML WXS tumor_bone_marrow CPT0452520002 820bd369-a70e-4ae8-a9dd-40a759cb5681_wxs_gdc_realn.bam 46343879721 BAM NA e64932e3-3ae2-4b27-a26f-7c779b11e8ce 3717615b61caae1832971e1e196d8257 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07488-54 C3L-07490.MethArray.Green.Tbm C3L-07490 AML Methylation Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Grn.idat 13677955 IDAT Green 7a2f2d6b-a7d4-4b18-a5a4-63f485025570 7d0de35217e92d2f28cc11844581632c NA Primary Blood Derived Cancer - Bone Marrow C3L-07490-55 C3L-07490.MethArray.Red.Tbm C3L-07490 AML Methylation Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Red.idat 13677955 IDAT Red f359d895-7a5b-4c09-809d-9cbdc63a8128 0add2784f43acd747a1c410199aaf597 NA Primary Blood Derived Cancer - Bone Marrow C3L-07490-55 C3L-07490.miRNA-Seq.Tbm C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACTCA_S29_L005_R1_001.unaln.bam 179381519 BAM NA f13a0eae-a044-4414-acd2-81068f92f0f9 786e8aa16cc7c57f58ddb68b19435b9a NA Primary Blood Derived Cancer - Bone Marrow C3L-07490-56 @@ -19824,6 +19875,57 @@ C3L-07490.WGS.Tbm C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 CPT041335000 C3L-07490.WGS.Tbm.hg38 C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wgs_gdc_realn.bam 176588748562 BAM NA 036102b0-a019-45e8-b9db-ea99632f6ad5 88ab345a94fb82932718332995380a61 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07490-55 C3L-07490.WXS.Tbm C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeExome.RP-1303.bam 30811613444 BAM NA 3d1cd92b-4657-496a-a287-0dbbe1b08799 0f1f3f851f7cf4b9a41a67b19fb85d44 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07490-55 C3L-07490.WXS.Tbm.hg38 C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wxs_gdc_realn.bam 42160884574 BAM NA 1931582d-980b-4481-b433-4f97b84e40ea ce5d9ec24792eddb3f2d295b03c0d329 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07490-55 +C3L-07571.MethArray.Green.Tbm C3L-07571 AML Methylation Array tumor_bone_marrow CPT0450420002 205987780094_R06C01_Grn.idat 13677891 IDAT Green 0d89020f-af5d-4b8e-9183-b51bb285696b 5e909b4c53c2b0d550f0ffdb6ce00230 NA Primary Blood Derived Cancer - Bone Marrow C3L-07571-54 +C3L-07571.MethArray.Red.Tbm C3L-07571 AML Methylation Array tumor_bone_marrow CPT0450420002 205987780094_R06C01_Red.idat 13677891 IDAT Red a43aef0f-5219-4e60-a817-f27cf214859f 6c78823c07abc9ffd01043fccf975fee NA Primary Blood Derived Cancer - Bone Marrow C3L-07571-54 +C3L-07571.miRNA-Seq.Tbm C3L-07571 AML miRNA-Seq tumor_bone_marrow CPT0450430002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L003_R1_001.unaln.bam 188788141 BAM NA fc03b55a-279b-43ac-9c8a-14ff9910ec7e 2720e4d7bc8b9540d4b5bc98d9da2f01 NA Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.miRNA-Seq.Tbm.hg38 C3L-07571 AML miRNA-Seq tumor_bone_marrow CPT0450430002 b5f89cb5-0c02-4e18-b696-87039e45f027_mirnaseq_gdc_realn.bam 217930202 BAM NA 62442541-d113-443f-b1f6-391c79d707e4 235d7216439af73f7879460605b7a520 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.RNA-Seq.chimeric.Tbm.hg38 C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 3b686a59-1699-49aa-bb85-77fea88e15b7.rna_seq.chimeric.gdc_realn.bam 524287316 BAM chimeric df9718f5-c8e8-4e0b-90a8-bcc97b3dc4e3 d6cefae9828ec0333a41cd158775ff9d hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.RNA-Seq.genomic.Tbm.hg38 C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 3b686a59-1699-49aa-bb85-77fea88e15b7.rna_seq.genomic.gdc_realn.bam 6565169283 BAM genomic 6dc0aa93-26a9-4c94-b3c1-062ed0f72141 134cb661e090a377f925ad7179931b8e hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.RNA-Seq.R1.Tbm C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3143905457 FASTQ NA 7940dd9a-50c5-42ef-8e5c-e16f364f7873 825668ef584811d1efd7912935f69fd6 NA Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.RNA-Seq.R2.Tbm C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3461894674 FASTQ NA fde668ac-9228-4e33-865c-d302024c9eff 6c5f370742515c77b8440d657b869fe8 NA Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.RNA-Seq.transcriptome.Tbm.hg38 C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 3b686a59-1699-49aa-bb85-77fea88e15b7.rna_seq.transcriptome.gdc_realn.bam 6502305974 BAM transcriptome 7b535f9c-3d4c-41a1-8817-5662c4f54d91 4518e7076a68c4a98cc3f597a28c749a hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07571-55 +C3L-07571.WGS.Nbc C3L-07571 AML WGS buccal_normal CPT0450390002 CPT0450390002.WholeGenome.RP-2158.bam 45819850562 BAM NA 47119597-515c-4639-b594-f49089ea0cda f914033340cba3594c902c89c7ba33f5 hg19 Buccal Cell Normal C3L-07571-50,C3L-07571-51,C3L-07571-52 +C3L-07571.WGS.Nbc.hg38 C3L-07571 AML WGS buccal_normal CPT0450390002 3bbb0c62-fd36-4be3-824d-3a7fdeb81983_wgs_gdc_realn.bam 138133955940 BAM NA 6558772a-b585-42b2-a004-dacac3f149a6 f3ebf8d9cb19926f8b99ec33c80bf2b5 hg38 Buccal Cell Normal C3L-07571-50,C3L-07571-51,C3L-07571-52 +C3L-07571.WGS.Tbm C3L-07571 AML WGS tumor_bone_marrow CPT0450420002 CPT0450420002.WholeGenome.RP-2158.bam 47499034816 BAM NA 8798c89f-fcdb-45f1-bded-41825fd2a2db 7d4e12f188627053db6f4ff7d063fd01 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07571-54 +C3L-07571.WGS.Tbm.hg38 C3L-07571 AML WGS tumor_bone_marrow CPT0450420002 1b597ae4-5759-4784-985a-c42e25e5dc54_wgs_gdc_realn.bam 134257075351 BAM NA 9098f219-140a-4650-99bd-e913e63d34a3 5b53ef08f49d7e7bd8382ac148342801 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07571-54 +C3L-07571.WXS.Nbc C3L-07571 AML WXS buccal_normal CPT0450390002 CPT0450390002.WholeExome.RP-1303.bam 34399186786 BAM NA 58a45b0b-3691-4b23-b59c-8c01dc26967e 52c9014306ddc436519cc16852b1e547 hg19 Buccal Cell Normal C3L-07571-50,C3L-07571-51,C3L-07571-52 +C3L-07571.WXS.Nbc.hg38 C3L-07571 AML WXS buccal_normal CPT0450390002 3bbb0c62-fd36-4be3-824d-3a7fdeb81983_wxs_gdc_realn.bam 46562922918 BAM NA 047efbf7-3f30-4e72-8121-f1b6d24124a4 e8833071d2c206b3314c399a20b2f72e hg38 Buccal Cell Normal C3L-07571-50,C3L-07571-51,C3L-07571-52 +C3L-07571.WXS.Tbm C3L-07571 AML WXS tumor_bone_marrow CPT0450420002 CPT0450420002.WholeExome.RP-1303.bam 23497486657 BAM NA 64c4d051-0d85-4657-b419-3b9ed0f4f9ef c941b2ab2bd4174140838e53013ca0b9 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07571-54 +C3L-07571.WXS.Tbm.hg38 C3L-07571 AML WXS tumor_bone_marrow CPT0450420002 1b597ae4-5759-4784-985a-c42e25e5dc54_wxs_gdc_realn.bam 32540642707 BAM NA d8825d20-1a40-44f8-8904-033752c3f3d5 2dbd6ab6991076813097c303fceb0059 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07571-54 +C3L-07580.MethArray.Green.Tbm C3L-07580 AML Methylation Array tumor_bone_marrow CPT0450560002 205987780161_R05C01_Grn.idat 13677900 IDAT Green 5c2e4ea6-875b-45ce-ae0f-36e7478ae0c2 1e6f85e2d51675d892d01ee28fc63e33 NA Primary Blood Derived Cancer - Bone Marrow C3L-07580-54 +C3L-07580.MethArray.Red.Tbm C3L-07580 AML Methylation Array tumor_bone_marrow CPT0450560002 205987780161_R05C01_Red.idat 13677900 IDAT Red 2d330bb6-029a-43ea-bba1-3ab4c385a4fb b31e66c1bb071c18d4abdb4cc75f599a NA Primary Blood Derived Cancer - Bone Marrow C3L-07580-54 +C3L-07580.miRNA-Seq.Tbm C3L-07580 AML miRNA-Seq tumor_bone_marrow CPT0450570002 220125_UNC32-K00270_0311_AHMNYYBBXY_TATAAT_S17_L003_R1_001.unaln.bam 188168137 BAM NA 87adc48d-b8cb-4fc0-b256-34f99db42631 bf4d23a7913347fd5f7ed87555d015d2 NA Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.miRNA-Seq.Tbm.hg38 C3L-07580 AML miRNA-Seq tumor_bone_marrow CPT0450570002 6443ddfa-6f06-4d5e-aad2-b53126da8cb3_mirnaseq_gdc_realn.bam 205517832 BAM NA 6078159e-4b37-4e6c-95a2-48273e5f7c6b 1f5b7aa20eeb18ed6e01a1406a2b36b7 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.RNA-Seq.chimeric.Tbm.hg38 C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 76f3060e-6e2b-4938-bee1-130638c23cd7.rna_seq.chimeric.gdc_realn.bam 829557084 BAM chimeric b36d69ee-88fa-49e3-98d8-f799ee884dfb 32fd8abd2476dc978cfeeaca31db14b9 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.RNA-Seq.genomic.Tbm.hg38 C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 76f3060e-6e2b-4938-bee1-130638c23cd7.rna_seq.genomic.gdc_realn.bam 8669776229 BAM genomic 799d587c-126e-42a9-8ad9-88077badc9b1 c115a032b09ee708dc4a73f1c957636b hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.RNA-Seq.R1.Tbm C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 220114_UNC32-K00270_0310_AHMWT5BBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 4232810155 FASTQ NA 904f3b52-5cda-4f18-9dc6-51e59da953c0 d4880fefdbdc7078669f25e2af716948 NA Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.RNA-Seq.R2.Tbm C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 220114_UNC32-K00270_0310_AHMWT5BBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4589670423 FASTQ NA c4858986-72e7-48a0-9267-d568553a0c6b a2182b850a47069b4f5b64e01350376a NA Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.RNA-Seq.transcriptome.Tbm.hg38 C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 76f3060e-6e2b-4938-bee1-130638c23cd7.rna_seq.transcriptome.gdc_realn.bam 10030594766 BAM transcriptome 0ff80623-5c25-41d8-a1df-284186491898 31de34f72838b6d1abf01459805863f6 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07580-55 +C3L-07580.WGS.Nbc C3L-07580 AML WGS buccal_normal CPT0450530002 CPT0450530002.WholeGenome.RP-2158.bam 50420111381 BAM NA c8086024-fee7-4c30-b17a-170bb8c77185 d2201e46b92db3be9292776d6c1a8f34 hg19 Buccal Cell Normal C3L-07580-50,C3L-07580-51,C3L-07580-52 +C3L-07580.WGS.Nbc.hg38 C3L-07580 AML WGS buccal_normal CPT0450530002 3c5a1d41-f628-46e3-9a3f-042eb106191f_wgs_gdc_realn.bam 151351851735 BAM NA aa98a997-9e86-4f56-a1a9-d43806329099 767ba2705d3274a940f719d2ecdd849b hg38 Buccal Cell Normal C3L-07580-50,C3L-07580-51,C3L-07580-52 +C3L-07580.WGS.Tbm C3L-07580 AML WGS tumor_bone_marrow CPT0450560002 CPT0450560002.WholeGenome.RP-2158.bam 51616601715 BAM NA 3232bd72-2773-4e49-b7d2-22ea3a3a1b7a e0fabd0955af4a0b1bd51ec756099280 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07580-54 +C3L-07580.WGS.Tbm.hg38 C3L-07580 AML WGS tumor_bone_marrow CPT0450560002 ed9169ab-f1bb-44fa-8e52-8ce9359631e8_wgs_gdc_realn.bam 154891779640 BAM NA 9e65b041-b05b-4bb7-90e7-893db1b98b3c a8b8ecf37ccf309e0433fa96882f9d2c hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07580-54 +C3L-07580.WXS.Nbc C3L-07580 AML WXS buccal_normal CPT0450530002 CPT0450530002.WholeExome.RP-1303.bam 37911580847 BAM NA ef77dc79-fb4c-472d-a074-ffadf31605a6 2062d87f8206437124cbc1de2b0eeb15 hg19 Buccal Cell Normal C3L-07580-50,C3L-07580-51,C3L-07580-52 +C3L-07580.WXS.Nbc.hg38 C3L-07580 AML WXS buccal_normal CPT0450530002 3c5a1d41-f628-46e3-9a3f-042eb106191f_wxs_gdc_realn.bam 51737708176 BAM NA cabb81e0-06ee-4b8e-8825-3255bf40595f d3ecbca8e57414a202fd81e8ed643391 hg38 Buccal Cell Normal C3L-07580-50,C3L-07580-51,C3L-07580-52 +C3L-07580.WXS.Tbm C3L-07580 AML WXS tumor_bone_marrow CPT0450560002 CPT0450560002.WholeExome.RP-1303.bam 27126622968 BAM NA 085b68d7-5601-4930-b059-c33df337de9a 419d0225a06e647e3ba047ffba90253d hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07580-54 +C3L-07580.WXS.Tbm.hg38 C3L-07580 AML WXS tumor_bone_marrow CPT0450560002 ed9169ab-f1bb-44fa-8e52-8ce9359631e8_wxs_gdc_realn.bam 37429046289 BAM NA 6731b430-5d7a-47c5-ae35-9574fb9373e8 5133e8bd9555959884a2145234ac066e hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07580-54 +C3L-07588.MethArray.Green.Tbm C3L-07588 AML Methylation Array tumor_bone_marrow CPT0450110002 205707890036_R06C01_Grn.idat 13677890 IDAT Green cb4b926c-412f-457e-a4e0-57b944d9f7ec 055c7514ecf50f766c6b14818e09aaca NA Primary Blood Derived Cancer - Bone Marrow C3L-07588-54 +C3L-07588.MethArray.Red.Tbm C3L-07588 AML Methylation Array tumor_bone_marrow CPT0450110002 205707890036_R06C01_Red.idat 13677890 IDAT Red bcc4de63-b60d-47d6-8f71-1c3ffe771008 558991f7734f55bfcd9d8a4696ccc9af NA Primary Blood Derived Cancer - Bone Marrow C3L-07588-54 +C3L-07588.miRNA-Seq.Tbm C3L-07588 AML miRNA-Seq tumor_bone_marrow CPT0450120002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAATCG_S15_L003_R1_001.unaln.bam 213568859 BAM NA 62d64653-b451-4599-929f-add214e9ea51 48d35908557572f1a56e2dcefb661c8c NA Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.miRNA-Seq.Tbm.hg38 C3L-07588 AML miRNA-Seq tumor_bone_marrow CPT0450120002 4d2d4ae7-1d67-4518-a0aa-593d9add6327_mirnaseq_gdc_realn.bam 238580265 BAM NA 3a61f2d4-a263-4984-89f2-58f0da64ae89 6835d235a9d379c5a6ea9539b3a9e236 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.RNA-Seq.chimeric.Tbm.hg38 C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 d4949387-7a6f-4489-9d24-fe86ddda8e85.rna_seq.chimeric.gdc_realn.bam 368351658 BAM chimeric c3f1bcdb-5deb-426b-b039-5fa94dd18a7b a8e9afb1b69f57ca49de40f9a189227e hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.RNA-Seq.genomic.Tbm.hg38 C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 d4949387-7a6f-4489-9d24-fe86ddda8e85.rna_seq.genomic.gdc_realn.bam 8481180376 BAM genomic 803cf36d-0844-4663-a17b-ccf2e7a79a80 3272818772521ec7c1c89f82ccf457fb hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.RNA-Seq.R1.Tbm C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 220114_UNC32-K00270_0310_AHMWT5BBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 4287777946 FASTQ NA 879707da-3b20-421a-9849-4d5a080beed5 024d627f644e11fb105fe208a7b5a791 NA Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.RNA-Seq.R2.Tbm C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 220114_UNC32-K00270_0310_AHMWT5BBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4694985239 FASTQ NA 4a6225c7-a60a-4c19-9fb7-e0a0b0a39f82 8efad166580574ff5749b424843b1283 NA Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.RNA-Seq.transcriptome.Tbm.hg38 C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 d4949387-7a6f-4489-9d24-fe86ddda8e85.rna_seq.transcriptome.gdc_realn.bam 11718020161 BAM transcriptome b34b275a-0abd-46e1-ac36-584e071dc330 9bfebb7468a95720751d298db05cdeb3 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07588-55 +C3L-07588.WGS.Nbc C3L-07588 AML WGS buccal_normal CPT0450070002 CPT0450070002.WholeGenome.RP-2158.bam 51049599171 BAM NA c3bff6a3-709f-4cee-8835-a8a6422c64c3 e80ec9b4475d00db20b26890cf08626f hg19 Buccal Cell Normal C3L-07588-50,C3L-07588-51,C3L-07588-52,C3L-07588-53 +C3L-07588.WGS.Nbc.hg38 C3L-07588 AML WGS buccal_normal CPT0450070002 bb394496-7dec-495a-8c6b-9b625e3408fc_wgs_gdc_realn.bam 156211629764 BAM NA ce3667ab-209d-4905-98a8-ee54842e1c50 54ee48ef57afb3e168fcfaaac9bdee3d hg38 Buccal Cell Normal C3L-07588-50,C3L-07588-51,C3L-07588-52,C3L-07588-53 +C3L-07588.WGS.Tbm C3L-07588 AML WGS tumor_bone_marrow CPT0450110002 CPT0450110002.WholeGenome.RP-2158.bam 47595340937 BAM NA f94d8647-1542-480d-9763-18378664da4f 35e01981b8f93121dbf3693d4ba683dc hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07588-54 +C3L-07588.WGS.Tbm.hg38 C3L-07588 AML WGS tumor_bone_marrow CPT0450110002 e57f7797-cf87-4c4f-bfa4-cc93536ed817_wgs_gdc_realn.bam 138679417934 BAM NA fa5fc9ef-1e51-4d08-b549-7f4640bb64d5 4b99721154ba6c46953255a060a9b12b hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07588-54 +C3L-07588.WXS.Nbc C3L-07588 AML WXS buccal_normal CPT0450070002 CPT0450070002.WholeExome.RP-1303.bam 32788537420 BAM NA c893fc2d-b8dd-4223-81d1-294d8e2af33f 0d185e29a55d2a18d1a846a94e94954c hg19 Buccal Cell Normal C3L-07588-50,C3L-07588-51,C3L-07588-52,C3L-07588-53 +C3L-07588.WXS.Nbc.hg38 C3L-07588 AML WXS buccal_normal CPT0450070002 bb394496-7dec-495a-8c6b-9b625e3408fc_wxs_gdc_realn.bam 44977193608 BAM NA 7de34f0d-b4f8-4a3c-a39f-a24318894ff0 fabfe444bae05bd80cd57c9365cc7dc4 hg38 Buccal Cell Normal C3L-07588-50,C3L-07588-51,C3L-07588-52,C3L-07588-53 +C3L-07588.WXS.Tbm C3L-07588 AML WXS tumor_bone_marrow CPT0450110002 CPT0450110002.WholeExome.RP-1303.bam 31068762962 BAM NA e6944a4f-15f1-4c45-8956-eee3e37f719a 05198d910467f4bc843f199dc0f30e2f hg19 Primary Blood Derived Cancer - Bone Marrow C3L-07588-54 +C3L-07588.WXS.Tbm.hg38 C3L-07588 AML WXS tumor_bone_marrow CPT0450110002 e57f7797-cf87-4c4f-bfa4-cc93536ed817_wxs_gdc_realn.bam 43239709205 BAM NA b9371452-d0a8-4db2-9eb9-9a7388301cc1 29e00e6409707c1c8906e696f7d24bd9 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-07588-54 C3L-07611.MethArray.Green.T C3L-07611 GBM Methylation Array tumor CPT0408500007 204930640111_R05C01_Grn.idat 13677956 IDAT Green a80351fb-be92-4aae-9b24-8c2e2370af27 9fdf36237e405087ed3636a0d0f03061 NA Primary Tumor C3L-07611-02 C3L-07611.MethArray.Red.T C3L-07611 GBM Methylation Array tumor CPT0408500007 204930640111_R05C01_Red.idat 13677956 IDAT Red 400527c0-c3b5-46c0-a60e-1cb3f76ee084 87564f3c61ba792f87175c055cefec8d NA Primary Tumor C3L-07611-02 C3L-07611.miRNA-Seq.T C3L-07611 GBM miRNA-Seq tumor CPT0408500010 210702_UNC32-K00270_0289_AHKJ22BBXY_TCATTC_S37_L005_R1_001.unaln.bam 204155380 BAM NA c4abe2f9-b7a8-4da2-a185-9be4ff656788 0dc4074a99e2737514957892bcc88998 NA Primary Tumor C3L-07611-02 diff --git a/CPTAC3.Demographics.dat b/CPTAC3.Demographics.dat index b08da1b..0e43359 100644 --- a/CPTAC3.Demographics.dat +++ b/CPTAC3.Demographics.dat @@ -1,4 +1,3 @@ -case disease ethnicity gender race days_to_birth 11LU013 LUAD not hispanic or latino male asian -21627 11LU016 LUAD not hispanic or latino male asian -22733 11LU022 LUAD not hispanic or latino male asian -19370 @@ -896,6 +895,7 @@ C3L-06983 AML not hispanic or latino female white -22623 C3L-06984 AML not hispanic or latino female white -13469 C3L-07012 AML not reported female not reported -14274 C3L-07013 AML not reported female not reported -30114 +C3L-07019 AML not reported male not reported -13982 C3L-07032 PDA Unknown male white null C3L-07033 PDA Unknown male white null C3L-07034 PDA Unknown male white null @@ -906,8 +906,13 @@ C3L-07111 CM not reported male white -21488 C3L-07202 GBM not hispanic or latino male white -27564 C3L-07213 GBM not hispanic or latino female white -10254 C3L-07437 AML not hispanic or latino female white -27419 +C3L-07438 AML not hispanic or latino female white null C3L-07439 AML not hispanic or latino male white -8773 +C3L-07488 AML not reported male not reported -23562 C3L-07490 AML not reported male not reported -23153 +C3L-07571 AML not reported male not reported -28754 +C3L-07580 AML not reported female not reported -29689 +C3L-07588 AML not reported female not reported -28162 C3L-07611 GBM not hispanic or latino female white -15303 C3N-00148 CCRCC not reported male not reported -19314 C3N-00149 CCRCC not reported female not reported -24990 @@ -1761,6 +1766,8 @@ C3N-05919 HNSCC not reported male not reported -17730 C3N-05923 LSCC not reported female not reported -27298 C3N-05929 LSCC not reported male not reported -28182 C3N-05991 GBM not reported male not reported -10474 +case disease ethnicity gender race days_to_birth +case disease ethnicity gender race days_to_birth GTEX-NPJ7-0011-R10A-SM-HAKXW GBM not reported female white null GTEX-P44H-0011-R10A-SM-HAKXX GBM not reported male white null GTEX-QVJO-0011-R10A-SM-HAKXV GBM not hispanic or latino female white null diff --git a/Catalog3/CPTAC3.Catalog3.tsv b/Catalog3/CPTAC3.Catalog3.tsv index fadef31..a8205ff 100644 --- a/Catalog3/CPTAC3.Catalog3.tsv +++ b/Catalog3/CPTAC3.Catalog3.tsv @@ -19703,6 +19703,23 @@ C3L-07013.WXS.Nbc C3L-07013 AML WXS buccal_normal CPT0423740001 CPT0423740001.Wh C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM harmonized CPTAC3 6d83953f-9d59-45fd-9f1c-48d917f0efe9 b231d52d4e35190e27c55c85912f43b0 {"aliquot_tag": "ALQ_a964b5cf", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-07013.WXS.Tbm C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeExome.RP-1303.bam 25242973164 BAM submitted_aligned CPTAC3 796241ec-a38a-4028-b621-343be77994c4 b10f96d90358bc9a98403a9f5b692bb0 {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-07013.WXS.Tbm.hg38 C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wxs_gdc_realn.bam 35353671823 BAM harmonized CPTAC3 77b57be8-82b9-4fbd-94cf-cdb1624b219c 8fdf03515b5336f304ca3f5ea4eaa54a {"aliquot_tag": "ALQ_fb3137d0", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07019.MethArray.Green.Tbm C3L-07019 AML Methylation_Array tumor_bone_marrow CPT0454330002 205987770157_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0db3e071-78c8-4e30-95a5-11b49e93a0cc 7904912771e62a84763ee57167768519 {"aliquot_tag": "ALQ_d6be4de4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.MethArray.Red.Tbm C3L-07019 AML Methylation_Array tumor_bone_marrow CPT0454330002 205987770157_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 e64d212b-e537-4f1a-abad-d28ba24e6473 0e3ce77b8876e914ddbab10ff0d38206 {"aliquot_tag": "ALQ_d6be4de4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.miRNA-Seq.S13_L003_R1.Tbm C3L-07019 AML miRNA-Seq tumor_bone_marrow CPT0454340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L003_R1_001.unaln.bam 219119006 BAM S13_L003_R1 submitted_unaligned CPTAC3 324c74f5-36b4-4df6-b428-eaad50769fd0 a1783320fd2b4d9e4e49ecc2326a4c2b {"aliquot_tag": "ALQ_649e91f4", "sample": "S13", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.miRNA-Seq.Tbm.hg38 C3L-07019 AML miRNA-Seq tumor_bone_marrow CPT0454340002 77a2c7e2-9464-4f07-938e-c1126595e06a_mirnaseq_gdc_realn.bam 238778089 BAM harmonized CPTAC3 7bbf8caa-4fe0-4d01-aeb3-48e2c64ed4db 67339a9ef9acdae690d9ec2d6a370288 {"aliquot_tag": "ALQ_649e91f4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.RNA-Seq.chimeric.Tbm.hg38 C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 2baad7f5-cd8f-4800-91d5-e013172580f6.rna_seq.chimeric.gdc_realn.bam 499770294 BAM chimeric harmonized CPTAC3 d607cdb0-1aed-42e3-a610-10c4b6d2236f ef2e1160094db339fa5ac9919401baec {"aliquot_tag": "ALQ_649e91f4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.RNA-Seq.genomic.Tbm.hg38 C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 2baad7f5-cd8f-4800-91d5-e013172580f6.rna_seq.genomic.gdc_realn.bam 7762584348 BAM genomic harmonized CPTAC3 675dfeb6-f779-46ae-bb9f-9819613539d2 a5a891f0f84c99ff0361cf741a3aaa0f {"aliquot_tag": "ALQ_649e91f4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.RNA-Seq.S6_L002_R1.Tbm C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 220114_UNC32-K00270_0310_AHMWT5BBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3838679067 FASTQ S6_L002_R1 submitted_unaligned CPTAC3 f5b8d86a-0576-45f8-8a3c-d1924b5017bf 6bcc8beb2f831bdde116b00c74f2ba9b {"aliquot_tag": "ALQ_649e91f4", "sample": "S6", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.RNA-Seq.S6_L002_R2.Tbm C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 220114_UNC32-K00270_0310_AHMWT5BBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4199560972 FASTQ S6_L002_R2 submitted_unaligned CPTAC3 3627b3ad-a79d-4043-9786-42f687c86ee9 e775a8c290386d5a9ae9ac8df9b284fa {"aliquot_tag": "ALQ_649e91f4", "sample": "S6", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.RNA-Seq.transcriptome.Tbm.hg38 C3L-07019 AML RNA-Seq tumor_bone_marrow CPT0454340002 2baad7f5-cd8f-4800-91d5-e013172580f6.rna_seq.transcriptome.gdc_realn.bam 9092620398 BAM transcriptome harmonized CPTAC3 e14f54bf-16b2-4be0-bcb3-5e84e34117e6 363179b760cda8f578b001cb5d718d3a {"aliquot_tag": "ALQ_649e91f4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.WGS.Nbc C3L-07019 AML WGS buccal_normal CPT0454430002 CPT0454430002.WholeGenome.RP-2158.bam 54511001718 BAM submitted_aligned CPTAC3 719b7bb9-28ae-436b-9f08-6e277f433171 083c18c8dee5489dfd0a6fe9083eb4c7 {"aliquot_tag": "ALQ_cbbb7d5c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07019.WGS.Nbc.hg38 C3L-07019 AML WGS buccal_normal CPT0454430002 66fca7a6-95f8-4982-8ba6-e016beee43d0_wgs_gdc_realn.bam 163205863567 BAM harmonized CPTAC3 09d4f031-3639-4997-bd8d-47f40614406a fb53cb51923d11a7079e48655405504b {"aliquot_tag": "ALQ_cbbb7d5c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07019.WGS.Tbm C3L-07019 AML WGS tumor_bone_marrow CPT0454330002 CPT0454330002.WholeGenome.RP-2158.bam 44745738163 BAM submitted_aligned CPTAC3 5e518699-6427-4666-a9f0-061757225d46 d482b2b5e00a59bb8bc25775f7eedcd8 {"aliquot_tag": "ALQ_d6be4de4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.WGS.Tbm.hg38 C3L-07019 AML WGS tumor_bone_marrow CPT0454330002 5ef159ef-6d4a-4492-ad20-f06620ec5393_wgs_gdc_realn.bam 132119114677 BAM harmonized CPTAC3 a55724e7-05c0-4e12-8d3e-6efca4a88629 6ca86e885e6f861378469c4530b11391 {"aliquot_tag": "ALQ_d6be4de4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.WXS.Nbc C3L-07019 AML WXS buccal_normal CPT0454430002 CPT0454430002.WholeExome.RP-1303.bam 31055174524 BAM submitted_aligned CPTAC3 b95996cb-a693-49e6-b095-65f2bccce173 6657291d6928c86035867b463c658cd9 {"aliquot_tag": "ALQ_cbbb7d5c", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07019.WXS.Nbc.hg38 C3L-07019 AML WXS buccal_normal CPT0454430002 66fca7a6-95f8-4982-8ba6-e016beee43d0_wxs_gdc_realn.bam 42197983317 BAM harmonized CPTAC3 fd859c96-110c-404f-b830-598ebb95a224 c05387d10da2fbb7141bc5906bf3da8f {"aliquot_tag": "ALQ_cbbb7d5c", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07019.WXS.Tbm C3L-07019 AML WXS tumor_bone_marrow CPT0454330002 CPT0454330002.WholeExome.RP-1303.bam 30911495011 BAM submitted_aligned CPTAC3 d5600216-becd-46fa-a456-68f5e937f691 bd2441b1afa0929ac87b9b6553ef9c86 {"aliquot_tag": "ALQ_d6be4de4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07019.WXS.Tbm.hg38 C3L-07019 AML WXS tumor_bone_marrow CPT0454330002 5ef159ef-6d4a-4492-ad20-f06620ec5393_wxs_gdc_realn.bam 43078287611 BAM harmonized CPTAC3 47829483-44ec-4b8f-ab01-31bec24a53e6 27380019bf75477b0b28f6fed70236f2 {"aliquot_tag": "ALQ_d6be4de4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} C3L-07032.RNA-Seq.chimeric.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.chimeric.gdc_realn.bam 63081382 BAM chimeric harmonized CPTAC3 85dfb5f6-65c3-49d5-bb1c-ebfe0dd3809d 18939ebe653af2d687acbe8238c6597f {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.genomic.gdc_realn.bam 9498612665 BAM genomic harmonized CPTAC3 f465ba1c-3234-48e7-91fd-fc11a79416d2 204a166fec8c019916e24e574a4cc2e4 {"aliquot_tag": "ALQ_828862eb", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-07032.RNA-Seq.S5_L002_R1.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 88ba9750-4977-49cb-9058-c68e1b1b7570 d258562bc158932ff5f7cc321078289d {"aliquot_tag": "ALQ_828862eb", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -19792,6 +19809,23 @@ C3L-07437.WXS.Nbc C3L-07437 AML WXS buccal_normal CPT0409180001 CPT0409180001.Wh C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM harmonized CPTAC3 2d79233e-307d-4835-b070-47feba860d01 e724ce4313c17ac322eab79b779a608d {"aliquot_tag": "ALQ_5c98e3e0", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-07437.WXS.Tpb C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeExome.RP-1303.bam 26091082341 BAM submitted_aligned CPTAC3 b620a304-20ec-44c8-adf0-6770dae68220 1913d52199f8e6e125716d0ecb3b2a45 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-07437.WXS.Tpb.hg38 C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wxs_gdc_realn.bam 36014507825 BAM harmonized CPTAC3 c030fb7f-77a4-4c1f-8a7e-06a6f91bef61 0aeed95744a8951c7e479c2e73f779f8 {"aliquot_tag": "ALQ_4e15a285", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-07438.MethArray.Green.Tbm C3L-07438 AML Methylation_Array tumor_bone_marrow CPT0447860002 205705520145_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e2e9eed3-cbc3-437d-826c-96ddf7517cfc 25d5e0f30fb108e1cb2eca0945b77c9d {"aliquot_tag": "ALQ_89db2854", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.MethArray.Red.Tbm C3L-07438 AML Methylation_Array tumor_bone_marrow CPT0447860002 205705520145_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 1d45490c-6267-4bb0-ada9-00be075b6dd9 cc22b1a331ac13a02e0698e640c5d4ae {"aliquot_tag": "ALQ_89db2854", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.miRNA-Seq.S27_L002_R1.Tbm C3L-07438 AML miRNA-Seq tumor_bone_marrow CPT0447870002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATGTCA_S27_L002_R1_001.unaln.bam 206324859 BAM S27_L002_R1 submitted_unaligned CPTAC3 d029bbd4-277f-4602-aa35-538018307211 8d4282a3ece194eb9090d192e36d2e2c {"aliquot_tag": "ALQ_b4bb01e4", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.miRNA-Seq.Tbm.hg38 C3L-07438 AML miRNA-Seq tumor_bone_marrow CPT0447870002 88e6e201-eae3-4355-be87-ab47e1e355f5_mirnaseq_gdc_realn.bam 229902845 BAM harmonized CPTAC3 e7b6dcf3-ecdd-4a26-bfd7-525782a9d303 75cebc1c7dc796fb27df326f19a3efb5 {"aliquot_tag": "ALQ_b4bb01e4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.RNA-Seq.chimeric.Tbm.hg38 C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 f66ab176-54c6-4de0-898f-745a8824534d.rna_seq.chimeric.gdc_realn.bam 90458347 BAM chimeric harmonized CPTAC3 3a037256-7329-4aca-964c-7b36ebf256dd 97ca4c5307e5742eb90b5dd084bdf50c {"aliquot_tag": "ALQ_b4bb01e4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.RNA-Seq.genomic.Tbm.hg38 C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 f66ab176-54c6-4de0-898f-745a8824534d.rna_seq.genomic.gdc_realn.bam 8984756972 BAM genomic harmonized CPTAC3 2c191622-220b-43f5-9463-89a98e4070eb 7386eee42a9b4058d06cec8e5090b139 {"aliquot_tag": "ALQ_b4bb01e4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.RNA-Seq.S12_L003_R1.Tbm C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 211207_UNC32-K00270_0306_BHMW5YBBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 3652960890 FASTQ S12_L003_R1 submitted_unaligned CPTAC3 dd4aae1f-4c30-43f4-89f5-904cefbc62b8 fd49163d3484239059ff16c5e065ae7c {"aliquot_tag": "ALQ_b4bb01e4", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.RNA-Seq.S12_L003_R2.Tbm C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 211207_UNC32-K00270_0306_BHMW5YBBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 4297595755 FASTQ S12_L003_R2 submitted_unaligned CPTAC3 3e4ad93a-45f9-45a0-b087-8190f75c6d6d cd3fe0d4a5884712902b39b33342562f {"aliquot_tag": "ALQ_b4bb01e4", "sample": "S12", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.RNA-Seq.transcriptome.Tbm.hg38 C3L-07438 AML RNA-Seq tumor_bone_marrow CPT0447870002 f66ab176-54c6-4de0-898f-745a8824534d.rna_seq.transcriptome.gdc_realn.bam 10436710376 BAM transcriptome harmonized CPTAC3 54587703-2fcc-42a0-87e6-01b8bfa92050 c817007ed42356cb4ec7c50f05edc564 {"aliquot_tag": "ALQ_b4bb01e4", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.WGS.Nbc C3L-07438 AML WGS buccal_normal CPT0447900002 CPT0447900002.WholeGenome.RP-2158.bam 47752411899 BAM submitted_aligned CPTAC3 18bf017e-69c1-48a8-b98c-69e5905dda88 1fcfc8bf757a4b711752edd9e3c54b06 {"aliquot_tag": "ALQ_cdc70e51", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07438.WGS.Nbc.hg38 C3L-07438 AML WGS buccal_normal CPT0447900002 dd76fef5-8d08-4d6d-b3e8-6e3da3fefe8b_wgs_gdc_realn.bam 142378026331 BAM harmonized CPTAC3 4e91a1e3-f499-4f9e-8a3b-88fa524afcd5 2506a923d73d83b5693b43e10ada2da6 {"aliquot_tag": "ALQ_cdc70e51", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07438.WGS.Tbm C3L-07438 AML WGS tumor_bone_marrow CPT0447860002 CPT0447860002.WholeGenome.RP-2158.bam 52040243771 BAM submitted_aligned CPTAC3 0dcf3d81-9faf-4518-aa8a-e95571e2b50d 549b92bc2c2a59cc7b873679e49adc8e {"aliquot_tag": "ALQ_89db2854", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.WGS.Tbm.hg38 C3L-07438 AML WGS tumor_bone_marrow CPT0447860002 f529979f-832f-41d2-91b5-5478e083a28d_wgs_gdc_realn.bam 151593031479 BAM harmonized CPTAC3 1c0ae29d-7e6c-4b71-b4f6-28aca5655a62 8a86b539d818f90992eeaf1ebe6bc5fc {"aliquot_tag": "ALQ_89db2854", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.WXS.Nbc C3L-07438 AML WXS buccal_normal CPT0447900002 CPT0447900002.WholeExome.RP-1303.bam 27962532719 BAM submitted_aligned CPTAC3 0d6d7d60-93c6-436b-b7ce-7a71a38a0ebd c0d0723bda7bb398fd7336b94a039e4c {"aliquot_tag": "ALQ_cdc70e51", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07438.WXS.Nbc.hg38 C3L-07438 AML WXS buccal_normal CPT0447900002 dd76fef5-8d08-4d6d-b3e8-6e3da3fefe8b_wxs_gdc_realn.bam 37655857885 BAM harmonized CPTAC3 bc7cc37e-99f4-496c-bf75-933da02323a5 e5964eb1f6cc847c1de1657eabcf9b8b {"aliquot_tag": "ALQ_cdc70e51", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07438.WXS.Tbm C3L-07438 AML WXS tumor_bone_marrow CPT0447860002 CPT0447860002.WholeExome.RP-1303.bam 24291661533 BAM submitted_aligned CPTAC3 d487479e-4906-4cb3-9a67-745b20099830 f71290c2eb54b8fc5ac4d6b2049de47b {"aliquot_tag": "ALQ_89db2854", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07438.WXS.Tbm.hg38 C3L-07438 AML WXS tumor_bone_marrow CPT0447860002 f529979f-832f-41d2-91b5-5478e083a28d_wxs_gdc_realn.bam 33615435840 BAM harmonized CPTAC3 ae450a06-487a-4d89-b2dd-e8aac197f3d6 87de64c4a416b873be50d0d2b70b79bb {"aliquot_tag": "ALQ_89db2854", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} C3L-07439.MethArray.Green.Tpb C3L-07439 AML Methylation_Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 65eebb3e-2e03-41b2-824a-4d1a730a879e cc0da6c18aae8761eceb026dc0c0c63a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-07439.MethArray.Red.Tpb C3L-07439 AML Methylation_Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 24467b3c-6531-47aa-bcbf-9161bf286e16 77c0e440730e5be3d02b29c9ac9fd342 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-07439.miRNA-Seq.S6_L003_R1.Tpb C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L003_R1_001.unaln.bam 188685033 BAM S6_L003_R1 submitted_unaligned CPTAC3 0d92688a-ace0-45e7-927e-256c262d8216 ef67e9ab1fbe0f329b17e02f9bbb2fad {"aliquot_tag": "ALQ_a098480", "sample": "S6", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} @@ -19809,6 +19843,23 @@ C3L-07439.WXS.Nbc C3L-07439 AML WXS buccal_normal CPT0409330001 CPT0409330001.Wh C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM harmonized CPTAC3 eed05d67-1bf7-436f-bfdb-b07dd6beb964 74e3e5d9c7c8ebf919257fe2ece95f1a {"aliquot_tag": "ALQ_668073fa", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} C3L-07439.WXS.Tpb C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeExome.RP-1303.bam 24945939921 BAM submitted_aligned CPTAC3 57f58bb4-54c3-4331-a72d-67a0561eca98 07756efe1f1a96dcbb254fa31679d464 {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "submitted"} C3L-07439.WXS.Tpb.hg38 C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wxs_gdc_realn.bam 34896018172 BAM harmonized CPTAC3 c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30 2d1784670cc5931edb214cbbaeb5810a {"aliquot_tag": "ALQ_3769ad30", "gdc_sample_type": "Primary Blood Derived Cancer - Peripheral Blood", "state": "validated"} +C3L-07488.MethArray.Green.Tbm C3L-07488 AML Methylation_Array tumor_bone_marrow CPT0452520002 205705520145_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b39ef819-23b2-43b7-8eb5-8dee6b9a0a83 a0d10f99c4274da4f5125de2810b6e86 {"aliquot_tag": "ALQ_5e57b273", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.MethArray.Red.Tbm C3L-07488 AML Methylation_Array tumor_bone_marrow CPT0452520002 205705520145_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 2af118ea-c3b6-4ee1-94b5-4bf152412c3d 77f439c37f0fa2e42328b70abf0dc29a {"aliquot_tag": "ALQ_5e57b273", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.miRNA-Seq.S19_L003_R1.Tbm C3L-07488 AML miRNA-Seq tumor_bone_marrow CPT0452530002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCCCGA_S19_L003_R1_001.unaln.bam 192970323 BAM S19_L003_R1 submitted_unaligned CPTAC3 2ed3f584-aceb-48da-aa54-508cbd2d24a0 0bad7a417d2d853e72facadd5b4fe1c2 {"aliquot_tag": "ALQ_63379bc3", "sample": "S19", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.miRNA-Seq.Tbm.hg38 C3L-07488 AML miRNA-Seq tumor_bone_marrow CPT0452530002 70d79104-24ab-488d-8080-a7c3acc9b2b8_mirnaseq_gdc_realn.bam 218632946 BAM harmonized CPTAC3 3cc648b2-31f0-4773-b188-3aae1aa2d1a3 61a41b8fce73ceb3bed16c79792abada {"aliquot_tag": "ALQ_63379bc3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.RNA-Seq.chimeric.Tbm.hg38 C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 339da8c5-1961-408e-bc07-d2637575bf72.rna_seq.chimeric.gdc_realn.bam 712896912 BAM chimeric harmonized CPTAC3 d0c1a478-455a-4534-b7e8-4301119d7850 5c39ee77aac6c4c4dedb7b7e6d90bbfd {"aliquot_tag": "ALQ_63379bc3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.RNA-Seq.genomic.Tbm.hg38 C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 339da8c5-1961-408e-bc07-d2637575bf72.rna_seq.genomic.gdc_realn.bam 8501371680 BAM genomic harmonized CPTAC3 50389625-3e90-4e59-8eb5-e50fdd70a3c3 61168ca5fe2e11aafd62aa18434e6332 {"aliquot_tag": "ALQ_63379bc3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.RNA-Seq.S9_L003_R1.Tbm C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4126283934 FASTQ S9_L003_R1 submitted_unaligned CPTAC3 e86414bc-3288-40f9-a858-010e2ff7ef05 97ceeda81a3d0c4ac5b33782c21ff763 {"aliquot_tag": "ALQ_63379bc3", "sample": "S9", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.RNA-Seq.S9_L003_R2.Tbm C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 4563495112 FASTQ S9_L003_R2 submitted_unaligned CPTAC3 438ae9e4-1702-4bb9-b39c-11eac5b1171c f1c06564af9b332dc427289dbd93509b {"aliquot_tag": "ALQ_63379bc3", "sample": "S9", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.RNA-Seq.transcriptome.Tbm.hg38 C3L-07488 AML RNA-Seq tumor_bone_marrow CPT0452530002 339da8c5-1961-408e-bc07-d2637575bf72.rna_seq.transcriptome.gdc_realn.bam 8841416663 BAM transcriptome harmonized CPTAC3 fff1a739-35ad-4d3f-8b06-4022f068545a 6efe7c73eca31a04f6a7c3749027a30e {"aliquot_tag": "ALQ_63379bc3", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.WGS.Nbc C3L-07488 AML WGS buccal_normal CPT0452480002 CPT0452480002.WholeGenome.RP-2158.bam 52592357094 BAM submitted_aligned CPTAC3 52170c8c-65c4-4070-9be2-faaa5f42fbcb 7f6846f150043fb51deb9cf3c092f464 {"aliquot_tag": "ALQ_dfbb7977", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07488.WGS.Nbc.hg38 C3L-07488 AML WGS buccal_normal CPT0452480002 c6f85b46-aaa2-49f1-ade3-c2fd53bf5597_wgs_gdc_realn.bam 189362753895 BAM harmonized CPTAC3 1866398c-fef4-4fd5-8866-b6bf19eab6fc bc58032ece8caeaad532534c651e120d {"aliquot_tag": "ALQ_dfbb7977", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07488.WGS.Tbm C3L-07488 AML WGS tumor_bone_marrow CPT0452520002 CPT0452520002.WholeGenome.RP-2158.bam 48738145756 BAM submitted_aligned CPTAC3 6600380a-166c-45ad-a576-3baa55e7ec4f d91b91368e0352048a6d7e0726b384e3 {"aliquot_tag": "ALQ_5e57b273", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.WGS.Tbm.hg38 C3L-07488 AML WGS tumor_bone_marrow CPT0452520002 820bd369-a70e-4ae8-a9dd-40a759cb5681_wgs_gdc_realn.bam 144875143524 BAM harmonized CPTAC3 d54dc76a-b11b-48da-9082-789d663d0595 27966751c4cfefb4cc204352b064e15c {"aliquot_tag": "ALQ_5e57b273", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.WXS.Nbc C3L-07488 AML WXS buccal_normal CPT0452480002 CPT0452480002.WholeExome.RP-1303.bam 21823337899 BAM submitted_aligned CPTAC3 a24e8c29-6518-4a59-8664-b40bacc3f79f 452dcdbbaa579d84a048df89a0718d26 {"aliquot_tag": "ALQ_dfbb7977", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07488.WXS.Nbc.hg38 C3L-07488 AML WXS buccal_normal CPT0452480002 c6f85b46-aaa2-49f1-ade3-c2fd53bf5597_wxs_gdc_realn.bam 28867684342 BAM harmonized CPTAC3 e8feacbe-f33f-4a81-a083-7f8943ab8acd 18d2bd101c0a5e596c53a8d9cacfbf67 {"aliquot_tag": "ALQ_dfbb7977", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07488.WXS.Tbm C3L-07488 AML WXS tumor_bone_marrow CPT0452520002 CPT0452520002.WholeExome.RP-1303.bam 33602521717 BAM submitted_aligned CPTAC3 9c1027e8-634f-4aa3-8b71-7828d824dfa2 7577c801f46568c7e82e8bb8316f6396 {"aliquot_tag": "ALQ_5e57b273", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07488.WXS.Tbm.hg38 C3L-07488 AML WXS tumor_bone_marrow CPT0452520002 820bd369-a70e-4ae8-a9dd-40a759cb5681_wxs_gdc_realn.bam 46343879721 BAM harmonized CPTAC3 e64932e3-3ae2-4b27-a26f-7c779b11e8ce 3717615b61caae1832971e1e196d8257 {"aliquot_tag": "ALQ_5e57b273", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} C3L-07490.MethArray.Green.Tbm C3L-07490 AML Methylation_Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7a2f2d6b-a7d4-4b18-a5a4-63f485025570 7d0de35217e92d2f28cc11844581632c {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-07490.MethArray.Red.Tbm C3L-07490 AML Methylation_Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 f359d895-7a5b-4c09-809d-9cbdc63a8128 0add2784f43acd747a1c410199aaf597 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-07490.miRNA-Seq.S29_L005_R1.Tbm C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACTCA_S29_L005_R1_001.unaln.bam 179381519 BAM S29_L005_R1 submitted_unaligned CPTAC3 f13a0eae-a044-4414-acd2-81068f92f0f9 786e8aa16cc7c57f58ddb68b19435b9a {"aliquot_tag": "ALQ_5fb3f2e0", "sample": "S29", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} @@ -19824,6 +19875,57 @@ C3L-07490.WGS.Tbm C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 CPT041335000 C3L-07490.WGS.Tbm.hg38 C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wgs_gdc_realn.bam 176588748562 BAM harmonized CPTAC3 036102b0-a019-45e8-b9db-ea99632f6ad5 88ab345a94fb82932718332995380a61 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-07490.WXS.Tbm C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeExome.RP-1303.bam 30811613444 BAM submitted_aligned CPTAC3 3d1cd92b-4657-496a-a287-0dbbe1b08799 0f1f3f851f7cf4b9a41a67b19fb85d44 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-07490.WXS.Tbm.hg38 C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wxs_gdc_realn.bam 42160884574 BAM harmonized CPTAC3 1931582d-980b-4481-b433-4f97b84e40ea ce5d9ec24792eddb3f2d295b03c0d329 {"aliquot_tag": "ALQ_18138830", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07571.MethArray.Green.Tbm C3L-07571 AML Methylation_Array tumor_bone_marrow CPT0450420002 205987780094_R06C01_Grn.idat 13677891 IDAT Green NA CPTAC3 0d89020f-af5d-4b8e-9183-b51bb285696b 5e909b4c53c2b0d550f0ffdb6ce00230 {"aliquot_tag": "ALQ_29470ff", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.MethArray.Red.Tbm C3L-07571 AML Methylation_Array tumor_bone_marrow CPT0450420002 205987780094_R06C01_Red.idat 13677891 IDAT Red NA CPTAC3 a43aef0f-5219-4e60-a817-f27cf214859f 6c78823c07abc9ffd01043fccf975fee {"aliquot_tag": "ALQ_29470ff", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.miRNA-Seq.S16_L003_R1.Tbm C3L-07571 AML miRNA-Seq tumor_bone_marrow CPT0450430002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L003_R1_001.unaln.bam 188788141 BAM S16_L003_R1 submitted_unaligned CPTAC3 fc03b55a-279b-43ac-9c8a-14ff9910ec7e 2720e4d7bc8b9540d4b5bc98d9da2f01 {"aliquot_tag": "ALQ_3ff4594f", "sample": "S16", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.miRNA-Seq.Tbm.hg38 C3L-07571 AML miRNA-Seq tumor_bone_marrow CPT0450430002 b5f89cb5-0c02-4e18-b696-87039e45f027_mirnaseq_gdc_realn.bam 217930202 BAM harmonized CPTAC3 62442541-d113-443f-b1f6-391c79d707e4 235d7216439af73f7879460605b7a520 {"aliquot_tag": "ALQ_3ff4594f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.RNA-Seq.chimeric.Tbm.hg38 C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 3b686a59-1699-49aa-bb85-77fea88e15b7.rna_seq.chimeric.gdc_realn.bam 524287316 BAM chimeric harmonized CPTAC3 df9718f5-c8e8-4e0b-90a8-bcc97b3dc4e3 d6cefae9828ec0333a41cd158775ff9d {"aliquot_tag": "ALQ_3ff4594f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.RNA-Seq.genomic.Tbm.hg38 C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 3b686a59-1699-49aa-bb85-77fea88e15b7.rna_seq.genomic.gdc_realn.bam 6565169283 BAM genomic harmonized CPTAC3 6dc0aa93-26a9-4c94-b3c1-062ed0f72141 134cb661e090a377f925ad7179931b8e {"aliquot_tag": "ALQ_3ff4594f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.RNA-Seq.S10_L003_R1.Tbm C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3143905457 FASTQ S10_L003_R1 submitted_unaligned CPTAC3 7940dd9a-50c5-42ef-8e5c-e16f364f7873 825668ef584811d1efd7912935f69fd6 {"aliquot_tag": "ALQ_3ff4594f", "sample": "S10", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.RNA-Seq.S10_L003_R2.Tbm C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3461894674 FASTQ S10_L003_R2 submitted_unaligned CPTAC3 fde668ac-9228-4e33-865c-d302024c9eff 6c5f370742515c77b8440d657b869fe8 {"aliquot_tag": "ALQ_3ff4594f", "sample": "S10", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.RNA-Seq.transcriptome.Tbm.hg38 C3L-07571 AML RNA-Seq tumor_bone_marrow CPT0450430002 3b686a59-1699-49aa-bb85-77fea88e15b7.rna_seq.transcriptome.gdc_realn.bam 6502305974 BAM transcriptome harmonized CPTAC3 7b535f9c-3d4c-41a1-8817-5662c4f54d91 4518e7076a68c4a98cc3f597a28c749a {"aliquot_tag": "ALQ_3ff4594f", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.WGS.Nbc C3L-07571 AML WGS buccal_normal CPT0450390002 CPT0450390002.WholeGenome.RP-2158.bam 45819850562 BAM submitted_aligned CPTAC3 47119597-515c-4639-b594-f49089ea0cda f914033340cba3594c902c89c7ba33f5 {"aliquot_tag": "ALQ_68417156", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07571.WGS.Nbc.hg38 C3L-07571 AML WGS buccal_normal CPT0450390002 3bbb0c62-fd36-4be3-824d-3a7fdeb81983_wgs_gdc_realn.bam 138133955940 BAM harmonized CPTAC3 6558772a-b585-42b2-a004-dacac3f149a6 f3ebf8d9cb19926f8b99ec33c80bf2b5 {"aliquot_tag": "ALQ_68417156", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07571.WGS.Tbm C3L-07571 AML WGS tumor_bone_marrow CPT0450420002 CPT0450420002.WholeGenome.RP-2158.bam 47499034816 BAM submitted_aligned CPTAC3 8798c89f-fcdb-45f1-bded-41825fd2a2db 7d4e12f188627053db6f4ff7d063fd01 {"aliquot_tag": "ALQ_29470ff", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.WGS.Tbm.hg38 C3L-07571 AML WGS tumor_bone_marrow CPT0450420002 1b597ae4-5759-4784-985a-c42e25e5dc54_wgs_gdc_realn.bam 134257075351 BAM harmonized CPTAC3 9098f219-140a-4650-99bd-e913e63d34a3 5b53ef08f49d7e7bd8382ac148342801 {"aliquot_tag": "ALQ_29470ff", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.WXS.Nbc C3L-07571 AML WXS buccal_normal CPT0450390002 CPT0450390002.WholeExome.RP-1303.bam 34399186786 BAM submitted_aligned CPTAC3 58a45b0b-3691-4b23-b59c-8c01dc26967e 52c9014306ddc436519cc16852b1e547 {"aliquot_tag": "ALQ_68417156", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07571.WXS.Nbc.hg38 C3L-07571 AML WXS buccal_normal CPT0450390002 3bbb0c62-fd36-4be3-824d-3a7fdeb81983_wxs_gdc_realn.bam 46562922918 BAM harmonized CPTAC3 047efbf7-3f30-4e72-8121-f1b6d24124a4 e8833071d2c206b3314c399a20b2f72e {"aliquot_tag": "ALQ_68417156", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07571.WXS.Tbm C3L-07571 AML WXS tumor_bone_marrow CPT0450420002 CPT0450420002.WholeExome.RP-1303.bam 23497486657 BAM submitted_aligned CPTAC3 64c4d051-0d85-4657-b419-3b9ed0f4f9ef c941b2ab2bd4174140838e53013ca0b9 {"aliquot_tag": "ALQ_29470ff", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07571.WXS.Tbm.hg38 C3L-07571 AML WXS tumor_bone_marrow CPT0450420002 1b597ae4-5759-4784-985a-c42e25e5dc54_wxs_gdc_realn.bam 32540642707 BAM harmonized CPTAC3 d8825d20-1a40-44f8-8904-033752c3f3d5 2dbd6ab6991076813097c303fceb0059 {"aliquot_tag": "ALQ_29470ff", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07580.MethArray.Green.Tbm C3L-07580 AML Methylation_Array tumor_bone_marrow CPT0450560002 205987780161_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 5c2e4ea6-875b-45ce-ae0f-36e7478ae0c2 1e6f85e2d51675d892d01ee28fc63e33 {"aliquot_tag": "ALQ_3c48059a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.MethArray.Red.Tbm C3L-07580 AML Methylation_Array tumor_bone_marrow CPT0450560002 205987780161_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 2d330bb6-029a-43ea-bba1-3ab4c385a4fb b31e66c1bb071c18d4abdb4cc75f599a {"aliquot_tag": "ALQ_3c48059a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.miRNA-Seq.S17_L003_R1.Tbm C3L-07580 AML miRNA-Seq tumor_bone_marrow CPT0450570002 220125_UNC32-K00270_0311_AHMNYYBBXY_TATAAT_S17_L003_R1_001.unaln.bam 188168137 BAM S17_L003_R1 submitted_unaligned CPTAC3 87adc48d-b8cb-4fc0-b256-34f99db42631 bf4d23a7913347fd5f7ed87555d015d2 {"aliquot_tag": "ALQ_1282c2a", "sample": "S17", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.miRNA-Seq.Tbm.hg38 C3L-07580 AML miRNA-Seq tumor_bone_marrow CPT0450570002 6443ddfa-6f06-4d5e-aad2-b53126da8cb3_mirnaseq_gdc_realn.bam 205517832 BAM harmonized CPTAC3 6078159e-4b37-4e6c-95a2-48273e5f7c6b 1f5b7aa20eeb18ed6e01a1406a2b36b7 {"aliquot_tag": "ALQ_1282c2a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.RNA-Seq.chimeric.Tbm.hg38 C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 76f3060e-6e2b-4938-bee1-130638c23cd7.rna_seq.chimeric.gdc_realn.bam 829557084 BAM chimeric harmonized CPTAC3 b36d69ee-88fa-49e3-98d8-f799ee884dfb 32fd8abd2476dc978cfeeaca31db14b9 {"aliquot_tag": "ALQ_1282c2a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.RNA-Seq.genomic.Tbm.hg38 C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 76f3060e-6e2b-4938-bee1-130638c23cd7.rna_seq.genomic.gdc_realn.bam 8669776229 BAM genomic harmonized CPTAC3 799d587c-126e-42a9-8ad9-88077badc9b1 c115a032b09ee708dc4a73f1c957636b {"aliquot_tag": "ALQ_1282c2a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.RNA-Seq.S11_L003_R1.Tbm C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 220114_UNC32-K00270_0310_AHMWT5BBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 4232810155 FASTQ S11_L003_R1 submitted_unaligned CPTAC3 904f3b52-5cda-4f18-9dc6-51e59da953c0 d4880fefdbdc7078669f25e2af716948 {"aliquot_tag": "ALQ_1282c2a", "sample": "S11", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.RNA-Seq.S11_L003_R2.Tbm C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 220114_UNC32-K00270_0310_AHMWT5BBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4589670423 FASTQ S11_L003_R2 submitted_unaligned CPTAC3 c4858986-72e7-48a0-9267-d568553a0c6b a2182b850a47069b4f5b64e01350376a {"aliquot_tag": "ALQ_1282c2a", "sample": "S11", "lane": "L003", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.RNA-Seq.transcriptome.Tbm.hg38 C3L-07580 AML RNA-Seq tumor_bone_marrow CPT0450570002 76f3060e-6e2b-4938-bee1-130638c23cd7.rna_seq.transcriptome.gdc_realn.bam 10030594766 BAM transcriptome harmonized CPTAC3 0ff80623-5c25-41d8-a1df-284186491898 31de34f72838b6d1abf01459805863f6 {"aliquot_tag": "ALQ_1282c2a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.WGS.Nbc C3L-07580 AML WGS buccal_normal CPT0450530002 CPT0450530002.WholeGenome.RP-2158.bam 50420111381 BAM submitted_aligned CPTAC3 c8086024-fee7-4c30-b17a-170bb8c77185 d2201e46b92db3be9292776d6c1a8f34 {"aliquot_tag": "ALQ_f4a88aea", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07580.WGS.Nbc.hg38 C3L-07580 AML WGS buccal_normal CPT0450530002 3c5a1d41-f628-46e3-9a3f-042eb106191f_wgs_gdc_realn.bam 151351851735 BAM harmonized CPTAC3 aa98a997-9e86-4f56-a1a9-d43806329099 767ba2705d3274a940f719d2ecdd849b {"aliquot_tag": "ALQ_f4a88aea", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07580.WGS.Tbm C3L-07580 AML WGS tumor_bone_marrow CPT0450560002 CPT0450560002.WholeGenome.RP-2158.bam 51616601715 BAM submitted_aligned CPTAC3 3232bd72-2773-4e49-b7d2-22ea3a3a1b7a e0fabd0955af4a0b1bd51ec756099280 {"aliquot_tag": "ALQ_3c48059a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.WGS.Tbm.hg38 C3L-07580 AML WGS tumor_bone_marrow CPT0450560002 ed9169ab-f1bb-44fa-8e52-8ce9359631e8_wgs_gdc_realn.bam 154891779640 BAM harmonized CPTAC3 9e65b041-b05b-4bb7-90e7-893db1b98b3c a8b8ecf37ccf309e0433fa96882f9d2c {"aliquot_tag": "ALQ_3c48059a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.WXS.Nbc C3L-07580 AML WXS buccal_normal CPT0450530002 CPT0450530002.WholeExome.RP-1303.bam 37911580847 BAM submitted_aligned CPTAC3 ef77dc79-fb4c-472d-a074-ffadf31605a6 2062d87f8206437124cbc1de2b0eeb15 {"aliquot_tag": "ALQ_f4a88aea", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07580.WXS.Nbc.hg38 C3L-07580 AML WXS buccal_normal CPT0450530002 3c5a1d41-f628-46e3-9a3f-042eb106191f_wxs_gdc_realn.bam 51737708176 BAM harmonized CPTAC3 cabb81e0-06ee-4b8e-8825-3255bf40595f d3ecbca8e57414a202fd81e8ed643391 {"aliquot_tag": "ALQ_f4a88aea", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07580.WXS.Tbm C3L-07580 AML WXS tumor_bone_marrow CPT0450560002 CPT0450560002.WholeExome.RP-1303.bam 27126622968 BAM submitted_aligned CPTAC3 085b68d7-5601-4930-b059-c33df337de9a 419d0225a06e647e3ba047ffba90253d {"aliquot_tag": "ALQ_3c48059a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07580.WXS.Tbm.hg38 C3L-07580 AML WXS tumor_bone_marrow CPT0450560002 ed9169ab-f1bb-44fa-8e52-8ce9359631e8_wxs_gdc_realn.bam 37429046289 BAM harmonized CPTAC3 6731b430-5d7a-47c5-ae35-9574fb9373e8 5133e8bd9555959884a2145234ac066e {"aliquot_tag": "ALQ_3c48059a", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} +C3L-07588.MethArray.Green.Tbm C3L-07588 AML Methylation_Array tumor_bone_marrow CPT0450110002 205707890036_R06C01_Grn.idat 13677890 IDAT Green NA CPTAC3 cb4b926c-412f-457e-a4e0-57b944d9f7ec 055c7514ecf50f766c6b14818e09aaca {"aliquot_tag": "ALQ_15f99b9c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.MethArray.Red.Tbm C3L-07588 AML Methylation_Array tumor_bone_marrow CPT0450110002 205707890036_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 bcc4de63-b60d-47d6-8f71-1c3ffe771008 558991f7734f55bfcd9d8a4696ccc9af {"aliquot_tag": "ALQ_15f99b9c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.miRNA-Seq.S15_L003_R1.Tbm C3L-07588 AML miRNA-Seq tumor_bone_marrow CPT0450120002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAATCG_S15_L003_R1_001.unaln.bam 213568859 BAM S15_L003_R1 submitted_unaligned CPTAC3 62d64653-b451-4599-929f-add214e9ea51 48d35908557572f1a56e2dcefb661c8c {"aliquot_tag": "ALQ_5259e14c", "sample": "S15", "lane": "L003", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.miRNA-Seq.Tbm.hg38 C3L-07588 AML miRNA-Seq tumor_bone_marrow CPT0450120002 4d2d4ae7-1d67-4518-a0aa-593d9add6327_mirnaseq_gdc_realn.bam 238580265 BAM harmonized CPTAC3 3a61f2d4-a263-4984-89f2-58f0da64ae89 6835d235a9d379c5a6ea9539b3a9e236 {"aliquot_tag": "ALQ_5259e14c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.RNA-Seq.chimeric.Tbm.hg38 C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 d4949387-7a6f-4489-9d24-fe86ddda8e85.rna_seq.chimeric.gdc_realn.bam 368351658 BAM chimeric harmonized CPTAC3 c3f1bcdb-5deb-426b-b039-5fa94dd18a7b a8e9afb1b69f57ca49de40f9a189227e {"aliquot_tag": "ALQ_5259e14c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.RNA-Seq.genomic.Tbm.hg38 C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 d4949387-7a6f-4489-9d24-fe86ddda8e85.rna_seq.genomic.gdc_realn.bam 8481180376 BAM genomic harmonized CPTAC3 803cf36d-0844-4663-a17b-ccf2e7a79a80 3272818772521ec7c1c89f82ccf457fb {"aliquot_tag": "ALQ_5259e14c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.RNA-Seq.S5_L002_R1.Tbm C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 220114_UNC32-K00270_0310_AHMWT5BBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 4287777946 FASTQ S5_L002_R1 submitted_unaligned CPTAC3 879707da-3b20-421a-9849-4d5a080beed5 024d627f644e11fb105fe208a7b5a791 {"aliquot_tag": "ALQ_5259e14c", "sample": "S5", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.RNA-Seq.S5_L002_R2.Tbm C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 220114_UNC32-K00270_0310_AHMWT5BBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4694985239 FASTQ S5_L002_R2 submitted_unaligned CPTAC3 4a6225c7-a60a-4c19-9fb7-e0a0b0a39f82 8efad166580574ff5749b424843b1283 {"aliquot_tag": "ALQ_5259e14c", "sample": "S5", "lane": "L002", "read": "R2", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.RNA-Seq.transcriptome.Tbm.hg38 C3L-07588 AML RNA-Seq tumor_bone_marrow CPT0450120002 d4949387-7a6f-4489-9d24-fe86ddda8e85.rna_seq.transcriptome.gdc_realn.bam 11718020161 BAM transcriptome harmonized CPTAC3 b34b275a-0abd-46e1-ac36-584e071dc330 9bfebb7468a95720751d298db05cdeb3 {"aliquot_tag": "ALQ_5259e14c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.WGS.Nbc C3L-07588 AML WGS buccal_normal CPT0450070002 CPT0450070002.WholeGenome.RP-2158.bam 51049599171 BAM submitted_aligned CPTAC3 c3bff6a3-709f-4cee-8835-a8a6422c64c3 e80ec9b4475d00db20b26890cf08626f {"aliquot_tag": "ALQ_51e5bd99", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07588.WGS.Nbc.hg38 C3L-07588 AML WGS buccal_normal CPT0450070002 bb394496-7dec-495a-8c6b-9b625e3408fc_wgs_gdc_realn.bam 156211629764 BAM harmonized CPTAC3 ce3667ab-209d-4905-98a8-ee54842e1c50 54ee48ef57afb3e168fcfaaac9bdee3d {"aliquot_tag": "ALQ_51e5bd99", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07588.WGS.Tbm C3L-07588 AML WGS tumor_bone_marrow CPT0450110002 CPT0450110002.WholeGenome.RP-2158.bam 47595340937 BAM submitted_aligned CPTAC3 f94d8647-1542-480d-9763-18378664da4f 35e01981b8f93121dbf3693d4ba683dc {"aliquot_tag": "ALQ_15f99b9c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.WGS.Tbm.hg38 C3L-07588 AML WGS tumor_bone_marrow CPT0450110002 e57f7797-cf87-4c4f-bfa4-cc93536ed817_wgs_gdc_realn.bam 138679417934 BAM harmonized CPTAC3 fa5fc9ef-1e51-4d08-b549-7f4640bb64d5 4b99721154ba6c46953255a060a9b12b {"aliquot_tag": "ALQ_15f99b9c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.WXS.Nbc C3L-07588 AML WXS buccal_normal CPT0450070002 CPT0450070002.WholeExome.RP-1303.bam 32788537420 BAM submitted_aligned CPTAC3 c893fc2d-b8dd-4223-81d1-294d8e2af33f 0d185e29a55d2a18d1a846a94e94954c {"aliquot_tag": "ALQ_51e5bd99", "gdc_sample_type": "Buccal Cell Normal", "state": "submitted"} +C3L-07588.WXS.Nbc.hg38 C3L-07588 AML WXS buccal_normal CPT0450070002 bb394496-7dec-495a-8c6b-9b625e3408fc_wxs_gdc_realn.bam 44977193608 BAM harmonized CPTAC3 7de34f0d-b4f8-4a3c-a39f-a24318894ff0 fabfe444bae05bd80cd57c9365cc7dc4 {"aliquot_tag": "ALQ_51e5bd99", "gdc_sample_type": "Buccal Cell Normal", "state": "validated"} +C3L-07588.WXS.Tbm C3L-07588 AML WXS tumor_bone_marrow CPT0450110002 CPT0450110002.WholeExome.RP-1303.bam 31068762962 BAM submitted_aligned CPTAC3 e6944a4f-15f1-4c45-8956-eee3e37f719a 05198d910467f4bc843f199dc0f30e2f {"aliquot_tag": "ALQ_15f99b9c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} +C3L-07588.WXS.Tbm.hg38 C3L-07588 AML WXS tumor_bone_marrow CPT0450110002 e57f7797-cf87-4c4f-bfa4-cc93536ed817_wxs_gdc_realn.bam 43239709205 BAM harmonized CPTAC3 b9371452-d0a8-4db2-9eb9-9a7388301cc1 29e00e6409707c1c8906e696f7d24bd9 {"aliquot_tag": "ALQ_15f99b9c", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "validated"} C3L-07611.MethArray.Green.T C3L-07611 GBM Methylation_Array tumor CPT0408500007 204930640111_R05C01_Grn.idat 13677956 IDAT Green NA CPTAC3 a80351fb-be92-4aae-9b24-8c2e2370af27 9fdf36237e405087ed3636a0d0f03061 {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07611.MethArray.Red.T C3L-07611 GBM Methylation_Array tumor CPT0408500007 204930640111_R05C01_Red.idat 13677956 IDAT Red NA CPTAC3 400527c0-c3b5-46c0-a60e-1cb3f76ee084 87564f3c61ba792f87175c055cefec8d {"aliquot_tag": "ALQ_b86d44b6", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-07611.miRNA-Seq.S37_L005_R1.T C3L-07611 GBM miRNA-Seq tumor CPT0408500010 210702_UNC32-K00270_0289_AHKJ22BBXY_TCATTC_S37_L005_R1_001.unaln.bam 204155380 BAM S37_L005_R1 submitted_unaligned CPTAC3 c4abe2f9-b7a8-4da2-a185-9be4ff656788 0dc4074a99e2737514957892bcc88998 {"aliquot_tag": "ALQ_3f12e054", "sample": "S37", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"}