From 76dd9985bee06c747f0acdf617b72ce8101efa87 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Tue, 16 Mar 2021 22:04:15 -0500 Subject: [PATCH] Adding WGS CNV results for 3 UCEC cases * Work dir: /home/m.wyczalkowski/Projects/CPTAC3/submit/20210316.WGS_CNV.UCEC_3 --- .../WGS_CNV_Somatic.DCC_analysis_summary.dat | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat b/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat index 04d25e8..efa5b72 100644 --- a/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat +++ b/DCC_Analysis_Summary/WGS_CNV_Somatic.DCC_analysis_summary.dat @@ -1017,6 +1017,12 @@ C3L-04849 HNSCC WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_H C3L-04849 HNSCC WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04849.gene_level.log2.seg.gz 299396 TSV 681441bac6efff551c0a6e1b4aa404af C3L-04849.WGS.T.hg38 a6498926-c298-4bc8-bfca-450dc0eb891a C3L-04849.WGS.N.hg38 914419b2-d11f-4f3e-9fc1-6bc5baeecefe SEG C3L-04853 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04853.cnv.gz 3963 TSV 0af0b3b7a007e6edd4a79c4121052560 C3L-04853.WGS.T.hg38 b55e752a-e1d0-4ac8-8d6d-c28b1ee96967 C3L-04853.WGS.N.hg38 048bd256-f280-4b1b-96f6-c3c55614fa35 CNV C3L-04853 PDA WGS_CNV_Somatic v2.0 20200525 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_CNV_Somatic_v2.0_Y3.b1_20200525/C3L-04853.gene_level.log2.seg.gz 296686 TSV ddb3e69cfa3e73ef476a7873218924f0 C3L-04853.WGS.T.hg38 b55e752a-e1d0-4ac8-8d6d-c28b1ee96967 C3L-04853.WGS.N.hg38 048bd256-f280-4b1b-96f6-c3c55614fa35 SEG +C3L-05571 UCEC WGS_CNV_Somatic v2.0 20200316 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_UCEC_3_20200316/C3L-05571.C3L-05571.cnv.gz 19861 TSV cded43af55c025b64234ad3ade0943e3 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 CNV +C3L-05571 UCEC WGS_CNV_Somatic v2.0 20200316 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_UCEC_3_20200316/C3L-05571.C3L-05571.gene_level.log2.seg.gz 305805 TSV 120f2f3094795291abe23cf659f6450a C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 SEG +C3L-05848 UCEC WGS_CNV_Somatic v2.0 20200316 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_UCEC_3_20200316/C3L-05848.C3L-05848.cnv.gz 26013 TSV 608ec174923219a39148e3614d99b5fb C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 CNV +C3L-05848 UCEC WGS_CNV_Somatic v2.0 20200316 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_UCEC_3_20200316/C3L-05848.C3L-05848.gene_level.log2.seg.gz 307377 TSV 46fd1c53cd031616aa3fb9a517932f48 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 SEG +C3L-05849 UCEC WGS_CNV_Somatic v2.0 20200316 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_UCEC_3_20200316/C3L-05849.C3L-05849.cnv.gz 9083 TSV c41c44533cf2b940a3819aed9c58f288 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 CNV +C3L-05849 UCEC WGS_CNV_Somatic v2.0 20200316 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_CNV_Somatic_v2.0_UCEC_3_20200316/C3L-05849.C3L-05849.gene_level.log2.seg.gz 300215 TSV 89c759afe8733c47e4005acdfa926d27 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 SEG C3N-00148 CCRCC WGS_CNV_Somatic v2.0 20190124 Y1 /CPTAC3_WashU_hg38/CCRCC/WGS_CNV_Somatic.CCRCC.all.hg38_v2.0_20190124/C3N-00148.cnv 6511 TSV 2b84b6f04fc2c6d3dbeb123611cb320d Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 CNV C3N-00148 CCRCC WGS_CNV_Somatic v2.0 20190124 Y1 /CPTAC3_WashU_hg38/CCRCC/WGS_CNV_Somatic.CCRCC.all.hg38_v2.0_20190124/C3N-00148.gene_level.log2.seg.gz 295890 TSV bb746a93f2de4967e8c064a289cb576a Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 SEG C3N-00148 CCRCC WGS_CNV_Somatic v2.0 20210310 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_CNV_Somatic_v2.0_CNV.CCRCC_ITH_20210310/C3N-00148.C3N-00148.WGS.T.HET_r6OkJK.hg38.cnv.gz 154493 TSV d0af2ae1d659f23f71b2fe6eb3676e97 C3N-00148.WGS.T.HET_r6OkJK.hg38 b106741d-59eb-42e6-b699-1d03231ca80b C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd CNV