From 6d679d7e00ee2b92ab113722c8af631879b62081 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Fri, 21 May 2021 16:16:28 -0500 Subject: [PATCH] Updating with discovery run 5/20/21 * Work dir: /home/mwyczalk_test/Projects/CPTAC3/discovery/discover.20210520 --- CPTAC3.Catalog.dat | 91 ++++++++++++++++++++++++---------------------- 1 file changed, 48 insertions(+), 43 deletions(-) diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 34924d5..e7277a1 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -8746,6 +8746,7 @@ C3L-02179.miRNA-Seq.T C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 210111_UNC32 C3L-02179.miRNA-Seq.T.hg38 C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 8039278d-0564-4bd6-873c-4d1a14f0bc1f_mirnaseq_gdc_realn.bam 301360244 BAM NA eb329e45-1460-4b24-88c1-7c9045b26e9b 9abb040b2ab297f3370de6a1d370b7da hg38 Primary Tumor C3L-02179-01 C3L-02179.RNA-Seq.R1.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 4325578436 FASTQ NA 291d9ec6-e718-475c-9115-aa9e7a13f309 07972d3b26f5d6aa8c85025051ad71d8 NA Primary Tumor C3L-02179-01 C3L-02179.RNA-Seq.R2.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 4818831598 FASTQ NA 0798efc6-6a07-47da-9b5e-36bb40d30086 f5735a0009252d14e8a3a384787b5ccd NA Primary Tumor C3L-02179-01 +C3L-02179.WGS.N C3L-02179 CCRCC WGS blood_normal CPT0389350002 CPT0389350002.WholeGenome.RP-2158.bam 22779104205 BAM NA 2ab17a16-391c-4218-b343-67d251a3e3a2 2be1443e6c30addfe2d6ccb6af9fac0c hg19 Blood Derived Normal C3L-02179-31 C3L-02179.WGS.T C3L-02179 CCRCC WGS tumor CPT0389320006 CPT0389320006.WholeGenome.RP-2158.bam 28943946031 BAM NA d170c5e9-0ca9-46ad-8d9a-84dc73b1fa65 b9a0ebe562818f7c536e826f1879c5be hg19 Primary Tumor C3L-02179-01 C3L-02179.WXS.N C3L-02179 CCRCC WXS blood_normal CPT0389350002 CPT0389350002.WholeExome.RP-1303.bam 22387851186 BAM NA e9f8d11d-499b-4edb-b5ae-6d2a9aa0a235 c1de8258b192529ec0ee00b65fe48ed2 hg19 Blood Derived Normal C3L-02179-31 C3L-02179.WXS.T C3L-02179 CCRCC WXS tumor CPT0389320006 CPT0389320006.WholeExome.RP-1303.bam 19586402059 BAM NA 6c498427-a089-414f-ac94-5d7874762bfb 5b9c96d172bbfb1f96a949624bd5d0b4 hg19 Primary Tumor C3L-02179-01 @@ -8791,6 +8792,10 @@ C3L-02204.RNA-Seq.R1.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 21010 C3L-02204.RNA-Seq.R1.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R1_001.fastq.gz 3921044191 FASTQ NA 458b1ced-ecc6-4d7a-a162-e5985bd3a4f3 9983ee4b54438c7d188765e952ae6775 NA Primary Tumor C3L-02204-01 C3L-02204.RNA-Seq.R2.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3983724232 FASTQ NA f858fdc6-a4fa-49f6-ad94-9484d7bf2d80 258b89ea1bcfb027affef460c6dc53d7 NA Solid Tissue Normal C3L-02204-02 C3L-02204.RNA-Seq.R2.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R2_001.fastq.gz 4426630672 FASTQ NA e12fd904-3826-45f6-9a89-3cd147f310de d5abd2f512aec4aa0568d32d8d86784f NA Primary Tumor C3L-02204-01 +C3L-02204.WGS.N C3L-02204 CCRCC WGS blood_normal CPT0389430002 CPT0389430002.WholeGenome.RP-2158.bam 28208508198 BAM NA da31d0eb-28b3-422e-880c-71ce48e563d4 c9be2f205ce2726ae53fcd7cdc027880 hg19 Blood Derived Normal C3L-02204-31 +C3L-02204.WGS.T C3L-02204 CCRCC WGS tumor CPT0389370006 CPT0389370006.WholeGenome.RP-2158.bam 24528002030 BAM NA 7753385e-7c08-420e-b379-ee8fcfda5601 d5300056c34b558d0bbebaa6eb4e80cc hg19 Primary Tumor C3L-02204-01 +C3L-02204.WXS.N C3L-02204 CCRCC WXS blood_normal CPT0389430002 CPT0389430002.WholeExome.RP-1303.bam 25281058829 BAM NA c3fd456b-5d6a-48a0-8e76-e8ffe3a4b330 01e9f8e922bf0af8dbed68e8a32ef4ab hg19 Blood Derived Normal C3L-02204-31 +C3L-02204.WXS.T C3L-02204 CCRCC WXS tumor CPT0389370006 CPT0389370006.WholeExome.RP-1303.bam 30754089845 BAM NA 6835f8c5-0a43-4b5a-bdde-4093f65b5751 2e6f06552091734052cc0f2b579fa07b hg19 Primary Tumor C3L-02204-01 C3L-02208.MethArray.Green.T C3L-02208 CCRCC Methylation Array tumor CPT0171890011 203219640160_R04C01_Grn.idat 13676216 IDAT Green 0fcf2422-53d3-4cfb-bf57-b9fd6756e56e 6b958b82b1757e1e2129301cd0114507 NA Primary Tumor C3L-02208-01 C3L-02208.MethArray.Red.T C3L-02208 CCRCC Methylation Array tumor CPT0171890011 203219640160_R04C01_Red.idat 13676216 IDAT Red 8b31528d-96d5-4e5f-8047-855dc3400eda a358cd01d22a8ccb0fc434cb3bc0ed83 NA Primary Tumor C3L-02208-01 C3L-02208.miRNA-Seq.A C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGTCA_S16_L002_R1_001.unaln.bam 277801776 BAM NA 450c632d-09b9-408f-a7d1-b186142c3573 e3394caf73429e875fafc32c45f74589 NA Solid Tissue Normal C3L-02208-02 @@ -15823,8 +15828,8 @@ C3L-05331.RNA-Seq.R2.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 2 C3L-05334.miRNA-Seq.Tbm C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGGCG_S43_L008_R1_001.unaln.bam 238972897 BAM NA 7e11e7ed-296b-4de7-a56a-5196ea3c96ce 0efd0162a19abdf8d090bd883a5b397d NA Primary Blood Derived Cancer - Bone Marrow C3L-05334-55 C3L-05334.RNA-Seq.R1.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R1_001.fastq.gz 4020869371 FASTQ NA e77c2a2d-dd02-46e6-a5d6-318bdb264914 a1d939e3935e75383fa7b31c4f0f37a9 NA Primary Blood Derived Cancer - Bone Marrow C3L-05334-55 C3L-05334.RNA-Seq.R2.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R2_001.fastq.gz 4279525035 FASTQ NA 06f9c2be-9c21-41f3-9144-768393c3a873 655c337c805de5a885223e13e786160e NA Primary Blood Derived Cancer - Bone Marrow C3L-05334-55 -C3L-05335.RNA-Seq.R1.Tbm C3L-05335 TBD RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ NA 96bcd3c9-b405-404c-b043-9ae0e4398765 d80464d333e7378d47324f6b21f4e56f NA Primary Blood Derived Cancer - Bone Marrow C3L-05335-55 -C3L-05335.RNA-Seq.R2.Tbm C3L-05335 TBD RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ NA 98a9da44-38a6-4705-9b02-f2332e487e40 e1d52986ae9e725b96138827044629d4 NA Primary Blood Derived Cancer - Bone Marrow C3L-05335-55 +C3L-05335.RNA-Seq.R1.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ NA 96bcd3c9-b405-404c-b043-9ae0e4398765 d80464d333e7378d47324f6b21f4e56f NA Primary Blood Derived Cancer - Bone Marrow C3L-05335-55 +C3L-05335.RNA-Seq.R2.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ NA 98a9da44-38a6-4705-9b02-f2332e487e40 e1d52986ae9e725b96138827044629d4 NA Primary Blood Derived Cancer - Bone Marrow C3L-05335-55 C3L-05338.miRNA-Seq.Tbm C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATTTT_S45_L008_R1_001.unaln.bam 291210175 BAM NA 8c0459df-deeb-41cc-a209-e59e5dc4ef88 8ce5fc61dc550ccec46a4c07078ffdcf NA Primary Blood Derived Cancer - Bone Marrow C3L-05338-55 C3L-05338.RNA-Seq.R1.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R1_001.fastq.gz 3333672847 FASTQ NA 8241771f-9643-4930-b2e7-9a475f409c7d 73d022874a6a788ced12a1e0faa80331 NA Primary Blood Derived Cancer - Bone Marrow C3L-05338-55 C3L-05338.RNA-Seq.R2.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R2_001.fastq.gz 3541389231 FASTQ NA 2866a4a3-9138-4b5f-81f8-58f3e929f704 768d51e328c6d491640404960b72785a NA Primary Blood Derived Cancer - Bone Marrow C3L-05338-55 @@ -35263,24 +35268,24 @@ C3N-05080.WXS.N C3N-05080 LSCC WXS blood_normal CPT0321670002 CPT0321670002.Whol C3N-05080.WXS.N.hg38 C3N-05080 LSCC WXS blood_normal CPT0321670002 7ab7860a-416f-40a9-ad13-90c49c392507_wxs_gdc_realn.bam 30013226366 BAM NA 5d92d6cb-0622-4376-871d-69b6978df9d8 4ab9f4704a3ab4ff0715871cde121fcd hg38 Blood Derived Normal C3N-05080-31 C3N-05080.WXS.T C3N-05080 LSCC WXS tumor CPT0321640006 CPT0321640006.WholeExome.RP-1303.bam 31591593862 BAM NA 5bf69ea5-7618-4046-9487-4f281533b64d fe3538fe2ed54323e454975b131583d8 hg19 Primary Tumor C3N-05080-07 C3N-05080.WXS.T.hg38 C3N-05080 LSCC WXS tumor CPT0321640006 9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wxs_gdc_realn.bam 43743988820 BAM NA 5573115d-3932-40c3-aa09-674bf155232d ad98f2b4d26bafe4b7b28b8d46dcee5d hg38 Primary Tumor C3N-05080-07 -C3N-05085.MethArray.Green.A C3N-05085 TBD Methylation Array tissue_normal CPT0313370009 204930640122_R01C01_Grn.idat 13677965 IDAT Green 7ab13a0d-088c-4885-a0b9-84d9d884e41f 87e979e14084872fbe6228796711b37f NA Solid Tissue Normal C3N-05085-10 -C3N-05085.MethArray.Green.T C3N-05085 TBD Methylation Array tumor CPT0384250006 204930630111_R08C01_Grn.idat 13677885 IDAT Green 694cc450-1e56-407c-aa8c-49580de2c17e 1b3b20168a810c2ea0cd2f949b1d277b NA Primary Tumor C3N-05085-08 -C3N-05085.MethArray.Red.A C3N-05085 TBD Methylation Array tissue_normal CPT0313370009 204930640122_R01C01_Red.idat 13677965 IDAT Red 75e701e1-9c63-4970-ba94-6ce81d151af1 4d9bc4f01c35c76ed1984d61fbc51d75 NA Solid Tissue Normal C3N-05085-10 -C3N-05085.MethArray.Red.T C3N-05085 TBD Methylation Array tumor CPT0384250006 204930630111_R08C01_Red.idat 13677885 IDAT Red 7d63ec11-8ba2-49ee-b488-f733ef26917f e2bafa6916f49e7eca0cb5c8c0372907 NA Primary Tumor C3N-05085-08 -C3N-05085.miRNA-Seq.A C3N-05085 TBD miRNA-Seq tissue_normal CPT0313370006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAAAAG_S5_L006_R1_001.unaln.bam 194905287 BAM NA 6e8c9e6e-fbe0-458d-aac2-0f5a07287d11 965920a6e72e7bb2e9f5466cf823ae6e NA Solid Tissue Normal C3N-05085-10 -C3N-05085.miRNA-Seq.A.hg38 C3N-05085 TBD miRNA-Seq tissue_normal CPT0313370006 58d4a96f-353e-4ee3-ab89-a766b95baddc_mirnaseq_gdc_realn.bam 212668176 BAM NA 8135f53e-468f-406b-9d30-c37913d76ee9 b8df2a3e8c8ce1890c920f39b30eda61 hg38 Solid Tissue Normal C3N-05085-10 -C3N-05085.miRNA-Seq.T C3N-05085 TBD miRNA-Seq tumor CPT0384250009 201209_UNC32-K00270_0265_AHJ55WBBXY_CTTGTA_S29_L007_R1_001.unaln.bam 265183032 BAM NA caca83ea-6ccb-4748-9a67-8f571a34199b 5ae07305fea0b299591e28fbbf8072c9 NA Primary Tumor C3N-05085-08 -C3N-05085.miRNA-Seq.T.hg38 C3N-05085 TBD miRNA-Seq tumor CPT0384250009 3f2cf33c-9f15-45a7-a205-58a1efb2011c_mirnaseq_gdc_realn.bam 285799429 BAM NA cced8d3f-f594-4492-b53f-58f57348eb59 d993f618265558cc305ff64a1a9ad044 hg38 Primary Tumor C3N-05085-08 -C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.chimeric.gdc_realn.bam 438394741 BAM chimeric 8b525d74-78f5-437a-8756-e279fc79ff86 c0cac62f2834bc8cf462f411c2e8d007 hg38 Solid Tissue Normal C3N-05085-10 -C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 TBD RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.chimeric.gdc_realn.bam 479205123 BAM chimeric 913acfba-a2ab-4c66-9d2a-527f3aea5b8a ac35bc33d8b449545eb2b9bfdb2bafa9 hg38 Primary Tumor C3N-05085-08 -C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.genomic.gdc_realn.bam 8029161656 BAM genomic 801e758c-a4d0-46eb-80ad-66955ab24c0b c78fb0775e5825e5972e2676e60bc58b hg38 Solid Tissue Normal C3N-05085-10 -C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 TBD RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.genomic.gdc_realn.bam 8657791455 BAM genomic cca77182-8040-47df-8a12-0067398f6c1b 5cfa13675d5f2f3068ef2a9e167e1079 hg38 Primary Tumor C3N-05085-08 -C3N-05085.RNA-Seq.R1.A C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ NA 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c NA Solid Tissue Normal C3N-05085-10 -C3N-05085.RNA-Seq.R1.T C3N-05085 TBD RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ NA dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 NA Primary Tumor C3N-05085-08 -C3N-05085.RNA-Seq.R2.A C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ NA 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 NA Solid Tissue Normal C3N-05085-10 -C3N-05085.RNA-Seq.R2.T C3N-05085 TBD RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ NA 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 NA Primary Tumor C3N-05085-08 -C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.transcriptome.gdc_realn.bam 8180973134 BAM transcriptome ca83d9a4-37ee-4132-99f6-c6e532ff0e34 495a6140112aa9c6531a3ad052c98223 hg38 Solid Tissue Normal C3N-05085-10 -C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 TBD RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.transcriptome.gdc_realn.bam 11130397782 BAM transcriptome b4f27b74-7c86-4722-9e74-4f46cf656602 1a75e24e752836fc261eadf4be245242 hg38 Primary Tumor C3N-05085-08 +C3N-05085.MethArray.Green.A C3N-05085 LSCC Methylation Array tissue_normal CPT0313370009 204930640122_R01C01_Grn.idat 13677965 IDAT Green 7ab13a0d-088c-4885-a0b9-84d9d884e41f 87e979e14084872fbe6228796711b37f NA Solid Tissue Normal C3N-05085-10 +C3N-05085.MethArray.Green.T C3N-05085 LSCC Methylation Array tumor CPT0384250006 204930630111_R08C01_Grn.idat 13677885 IDAT Green 694cc450-1e56-407c-aa8c-49580de2c17e 1b3b20168a810c2ea0cd2f949b1d277b NA Primary Tumor C3N-05085-08 +C3N-05085.MethArray.Red.A C3N-05085 LSCC Methylation Array tissue_normal CPT0313370009 204930640122_R01C01_Red.idat 13677965 IDAT Red 75e701e1-9c63-4970-ba94-6ce81d151af1 4d9bc4f01c35c76ed1984d61fbc51d75 NA Solid Tissue Normal C3N-05085-10 +C3N-05085.MethArray.Red.T C3N-05085 LSCC Methylation Array tumor CPT0384250006 204930630111_R08C01_Red.idat 13677885 IDAT Red 7d63ec11-8ba2-49ee-b488-f733ef26917f e2bafa6916f49e7eca0cb5c8c0372907 NA Primary Tumor C3N-05085-08 +C3N-05085.miRNA-Seq.A C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAAAAG_S5_L006_R1_001.unaln.bam 194905287 BAM NA 6e8c9e6e-fbe0-458d-aac2-0f5a07287d11 965920a6e72e7bb2e9f5466cf823ae6e NA Solid Tissue Normal C3N-05085-10 +C3N-05085.miRNA-Seq.A.hg38 C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 58d4a96f-353e-4ee3-ab89-a766b95baddc_mirnaseq_gdc_realn.bam 212668176 BAM NA 8135f53e-468f-406b-9d30-c37913d76ee9 b8df2a3e8c8ce1890c920f39b30eda61 hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.miRNA-Seq.T C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 201209_UNC32-K00270_0265_AHJ55WBBXY_CTTGTA_S29_L007_R1_001.unaln.bam 265183032 BAM NA caca83ea-6ccb-4748-9a67-8f571a34199b 5ae07305fea0b299591e28fbbf8072c9 NA Primary Tumor C3N-05085-08 +C3N-05085.miRNA-Seq.T.hg38 C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 3f2cf33c-9f15-45a7-a205-58a1efb2011c_mirnaseq_gdc_realn.bam 285799429 BAM NA cced8d3f-f594-4492-b53f-58f57348eb59 d993f618265558cc305ff64a1a9ad044 hg38 Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.chimeric.gdc_realn.bam 438394741 BAM chimeric 8b525d74-78f5-437a-8756-e279fc79ff86 c0cac62f2834bc8cf462f411c2e8d007 hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.chimeric.gdc_realn.bam 479205123 BAM chimeric 913acfba-a2ab-4c66-9d2a-527f3aea5b8a ac35bc33d8b449545eb2b9bfdb2bafa9 hg38 Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.genomic.gdc_realn.bam 8029161656 BAM genomic 801e758c-a4d0-46eb-80ad-66955ab24c0b c78fb0775e5825e5972e2676e60bc58b hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.genomic.gdc_realn.bam 8657791455 BAM genomic cca77182-8040-47df-8a12-0067398f6c1b 5cfa13675d5f2f3068ef2a9e167e1079 hg38 Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.R1.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ NA 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c NA Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.R1.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ NA dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 NA Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.R2.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ NA 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 NA Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.R2.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ NA 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 NA Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.transcriptome.gdc_realn.bam 8180973134 BAM transcriptome ca83d9a4-37ee-4132-99f6-c6e532ff0e34 495a6140112aa9c6531a3ad052c98223 hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.transcriptome.gdc_realn.bam 11130397782 BAM transcriptome b4f27b74-7c86-4722-9e74-4f46cf656602 1a75e24e752836fc261eadf4be245242 hg38 Primary Tumor C3N-05085-08 C3N-05100.MethArray.Green.T C3N-05100 LSCC Methylation Array tumor CPT0321680006 204372030023_R06C01_Grn.idat 13677895 IDAT Green 42ea3db3-7878-4d91-b7df-10969ada1006 30a9c32459d689e4e3daf2fc43b3e232 NA Primary Tumor C3N-05100-07 C3N-05100.MethArray.Red.T C3N-05100 LSCC Methylation Array tumor CPT0321680006 204372030023_R06C01_Red.idat 13677895 IDAT Red a42733c2-680c-48ae-9dc9-05063e929cb7 f7361203d4e0e9e65e189cfa3b49a2d1 NA Primary Tumor C3N-05100-07 C3N-05100.miRNA-Seq.T C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L008_R1_001.unaln.bam 205266159 BAM NA 089f3849-cf1f-43fa-ac2a-5f52e90983be 0473fd72d896d6cf03b9da1e588a24c9 NA Primary Tumor C3N-05100-07 @@ -35352,29 +35357,29 @@ C3N-05629.WXS.N C3N-05629 LSCC WXS blood_normal CPT0321800002 CPT0321800002.Whol C3N-05629.WXS.N.hg38 C3N-05629 LSCC WXS blood_normal CPT0321800002 52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wxs_gdc_realn.bam 29425665424 BAM NA 5858e7a0-8245-4e5f-ab44-f1d59930ba6d bd9e164b7a875d102890bfd88f369c55 hg38 Blood Derived Normal C3N-05629-31 C3N-05629.WXS.T C3N-05629 LSCC WXS tumor CPT0321760006 CPT0321760006.WholeExome.RP-1303.bam 41572110141 BAM NA 129764fd-45fa-4597-81ab-84dec556f710 2fbd06437bf0f65caede964f3c0d1773 hg19 Primary Tumor C3N-05629-01 C3N-05629.WXS.T.hg38 C3N-05629 LSCC WXS tumor CPT0321760006 392cdd57-f49f-436c-88b4-556f2a60586a_wxs_gdc_realn.bam 57779377757 BAM NA 602b4fc0-be3b-43af-9651-9b78edf6e935 05000c4b3736dfabdd08d13359258c36 hg38 Primary Tumor C3N-05629-01 -C3N-05911.MethArray.Green.A C3N-05911 TBD Methylation Array tissue_normal CPT0321870006 204930640042_R07C01_Grn.idat 13677900 IDAT Green 6671f685-f478-49c1-82f9-5149db689aa8 47285c88808e69081da0dff962854421 NA Solid Tissue Normal C3N-05911-09 -C3N-05911.MethArray.Green.T C3N-05911 TBD Methylation Array tumor CPT0384280006 204930640023_R08C01_Grn.idat 13677885 IDAT Green cfd1a0cd-56f1-42d5-bc6b-8241577345ce e4666304efd25f98e755cc0aaa9a0a20 NA Primary Tumor C3N-05911-02 -C3N-05911.MethArray.Red.A C3N-05911 TBD Methylation Array tissue_normal CPT0321870006 204930640042_R07C01_Red.idat 13677900 IDAT Red 1c811e33-42b4-4103-8b83-324c955ebed9 d8075a08f703e6cd01a6fb9ca5948ed9 NA Solid Tissue Normal C3N-05911-09 -C3N-05911.MethArray.Red.T C3N-05911 TBD Methylation Array tumor CPT0384280006 204930640023_R08C01_Red.idat 13677885 IDAT Red 4446a24e-7b63-4a23-a69c-1b129b6da22a 420663b6f4796483e4f6e5b1e4f84893 NA Primary Tumor C3N-05911-02 -C3N-05911.miRNA-Seq.A C3N-05911 TBD miRNA-Seq tissue_normal CPT0321870009 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGATC_S27_L007_R1_001.unaln.bam 209412885 BAM NA e7ac4a78-57e6-4220-a4d7-102c432fb9cb c1dfa639e8c7cd83e82fe3740bcc92d3 NA Solid Tissue Normal C3N-05911-09 -C3N-05911.miRNA-Seq.A.hg38 C3N-05911 TBD miRNA-Seq tissue_normal CPT0321870009 8bbcbd7c-552f-4614-beb1-784a612d7a45_mirnaseq_gdc_realn.bam 229055485 BAM NA 47330cbc-de15-4de1-8354-2b54d3874d3c c9b363256874422940d5b30522885544 hg38 Solid Tissue Normal C3N-05911-09 -C3N-05911.miRNA-Seq.T C3N-05911 TBD miRNA-Seq tumor CPT0384280009 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTCAA_S24_L007_R1_001.unaln.bam 335161236 BAM NA 50689b11-63be-4b1b-aa4e-0bc0c1cbb938 44d4de901708dbca725a4c31f0c14135 NA Primary Tumor C3N-05911-02 -C3N-05911.miRNA-Seq.T.hg38 C3N-05911 TBD miRNA-Seq tumor CPT0384280009 982cb22a-ef85-47bb-ac67-3681731e6110_mirnaseq_gdc_realn.bam 359864120 BAM NA cef06ca3-dc8e-4834-b757-e323a3abada9 a46f78f678929cac2590fec4db3d97e1 hg38 Primary Tumor C3N-05911-02 -C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.chimeric.gdc_realn.bam 430945174 BAM chimeric fd457577-d86b-43ab-81ba-8a8bfe6bf28c 55e695332cec1440bf2e6e4d8473dbd2 hg38 Solid Tissue Normal C3N-05911-09 -C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 TBD RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.chimeric.gdc_realn.bam 348072812 BAM chimeric ef9e948e-b96e-4c7f-a527-3aedab670897 898c44bc83b274658910780a9ac42dbb hg38 Primary Tumor C3N-05911-02 -C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.genomic.gdc_realn.bam 10513969798 BAM genomic 3e31edf8-9755-470f-9baa-d47207876dca 6cb75c3ddacdf33d87d0f64d897003ff hg38 Solid Tissue Normal C3N-05911-09 -C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 TBD RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.genomic.gdc_realn.bam 6768653975 BAM genomic 71263301-3c68-4ba8-b9a4-916e685587ce 739a37a3712dcc62665680df39b43bed hg38 Primary Tumor C3N-05911-02 -C3N-05911.RNA-Seq.R1.A C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ NA a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c NA Solid Tissue Normal C3N-05911-09 -C3N-05911.RNA-Seq.R1.T C3N-05911 TBD RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ NA 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 NA Primary Tumor C3N-05911-02 -C3N-05911.RNA-Seq.R2.A C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ NA 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 NA Solid Tissue Normal C3N-05911-09 -C3N-05911.RNA-Seq.R2.T C3N-05911 TBD RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ NA 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d NA Primary Tumor C3N-05911-02 -C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.transcriptome.gdc_realn.bam 12383098108 BAM transcriptome 2697aa4c-c744-425f-bcf2-726c5ecbac48 3372397ca905a1f828a956eff9333174 hg38 Solid Tissue Normal C3N-05911-09 -C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 TBD RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.transcriptome.gdc_realn.bam 10776331017 BAM transcriptome d83b7d15-a641-48c2-aa9c-f1d5c270befd 4aff046bcd49e6d61adb39a976f033ab hg38 Primary Tumor C3N-05911-02 -C3N-05911.WGS.N C3N-05911 TBD WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM NA 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 hg19 Blood Derived Normal C3N-05911-31 -C3N-05911.WGS.T C3N-05911 TBD WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM NA 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 hg19 Primary Tumor C3N-05911-02 -C3N-05911.WXS.A C3N-05911 TBD WXS tissue_normal CPT0321870006 CPT0321870006.WholeExome.RP-1303.bam 21699064525 BAM NA d32c097e-ef8a-4061-ac06-da419499d068 e2712f3dda8a311665c7793a3a95eb0f hg19 Solid Tissue Normal C3N-05911-09 -C3N-05911.WXS.N C3N-05911 TBD WXS blood_normal CPT0321900002 CPT0321900002.WholeExome.RP-1303.bam 24715994767 BAM NA 90062731-21cb-411a-aa06-8d645b53633d 4e4b5bb3703f9326579a013b4dc641a8 hg19 Blood Derived Normal C3N-05911-31 -C3N-05911.WXS.T C3N-05911 TBD WXS tumor CPT0384280006 CPT0384280006.WholeExome.RP-1303.bam 31272418772 BAM NA c88fe497-d5ef-4b4a-a28e-52f6e4d6834f d01995d54f1ea43faaaf551c1d0411de hg19 Primary Tumor C3N-05911-02 +C3N-05911.MethArray.Green.A C3N-05911 LSCC Methylation Array tissue_normal CPT0321870006 204930640042_R07C01_Grn.idat 13677900 IDAT Green 6671f685-f478-49c1-82f9-5149db689aa8 47285c88808e69081da0dff962854421 NA Solid Tissue Normal C3N-05911-09 +C3N-05911.MethArray.Green.T C3N-05911 LSCC Methylation Array tumor CPT0384280006 204930640023_R08C01_Grn.idat 13677885 IDAT Green cfd1a0cd-56f1-42d5-bc6b-8241577345ce e4666304efd25f98e755cc0aaa9a0a20 NA Primary Tumor C3N-05911-02 +C3N-05911.MethArray.Red.A C3N-05911 LSCC Methylation Array tissue_normal CPT0321870006 204930640042_R07C01_Red.idat 13677900 IDAT Red 1c811e33-42b4-4103-8b83-324c955ebed9 d8075a08f703e6cd01a6fb9ca5948ed9 NA Solid Tissue Normal C3N-05911-09 +C3N-05911.MethArray.Red.T C3N-05911 LSCC Methylation Array tumor CPT0384280006 204930640023_R08C01_Red.idat 13677885 IDAT Red 4446a24e-7b63-4a23-a69c-1b129b6da22a 420663b6f4796483e4f6e5b1e4f84893 NA Primary Tumor C3N-05911-02 +C3N-05911.miRNA-Seq.A C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGATC_S27_L007_R1_001.unaln.bam 209412885 BAM NA e7ac4a78-57e6-4220-a4d7-102c432fb9cb c1dfa639e8c7cd83e82fe3740bcc92d3 NA Solid Tissue Normal C3N-05911-09 +C3N-05911.miRNA-Seq.A.hg38 C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 8bbcbd7c-552f-4614-beb1-784a612d7a45_mirnaseq_gdc_realn.bam 229055485 BAM NA 47330cbc-de15-4de1-8354-2b54d3874d3c c9b363256874422940d5b30522885544 hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.miRNA-Seq.T C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTCAA_S24_L007_R1_001.unaln.bam 335161236 BAM NA 50689b11-63be-4b1b-aa4e-0bc0c1cbb938 44d4de901708dbca725a4c31f0c14135 NA Primary Tumor C3N-05911-02 +C3N-05911.miRNA-Seq.T.hg38 C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 982cb22a-ef85-47bb-ac67-3681731e6110_mirnaseq_gdc_realn.bam 359864120 BAM NA cef06ca3-dc8e-4834-b757-e323a3abada9 a46f78f678929cac2590fec4db3d97e1 hg38 Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.chimeric.gdc_realn.bam 430945174 BAM chimeric fd457577-d86b-43ab-81ba-8a8bfe6bf28c 55e695332cec1440bf2e6e4d8473dbd2 hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.chimeric.gdc_realn.bam 348072812 BAM chimeric ef9e948e-b96e-4c7f-a527-3aedab670897 898c44bc83b274658910780a9ac42dbb hg38 Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.genomic.gdc_realn.bam 10513969798 BAM genomic 3e31edf8-9755-470f-9baa-d47207876dca 6cb75c3ddacdf33d87d0f64d897003ff hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.genomic.gdc_realn.bam 6768653975 BAM genomic 71263301-3c68-4ba8-b9a4-916e685587ce 739a37a3712dcc62665680df39b43bed hg38 Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.R1.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ NA a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c NA Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.R1.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ NA 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 NA Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.R2.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ NA 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 NA Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.R2.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ NA 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d NA Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.transcriptome.gdc_realn.bam 12383098108 BAM transcriptome 2697aa4c-c744-425f-bcf2-726c5ecbac48 3372397ca905a1f828a956eff9333174 hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.transcriptome.gdc_realn.bam 10776331017 BAM transcriptome d83b7d15-a641-48c2-aa9c-f1d5c270befd 4aff046bcd49e6d61adb39a976f033ab hg38 Primary Tumor C3N-05911-02 +C3N-05911.WGS.N C3N-05911 LSCC WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM NA 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 hg19 Blood Derived Normal C3N-05911-31 +C3N-05911.WGS.T C3N-05911 LSCC WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM NA 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 hg19 Primary Tumor C3N-05911-02 +C3N-05911.WXS.A C3N-05911 LSCC WXS tissue_normal CPT0321870006 CPT0321870006.WholeExome.RP-1303.bam 21699064525 BAM NA d32c097e-ef8a-4061-ac06-da419499d068 e2712f3dda8a311665c7793a3a95eb0f hg19 Solid Tissue Normal C3N-05911-09 +C3N-05911.WXS.N C3N-05911 LSCC WXS blood_normal CPT0321900002 CPT0321900002.WholeExome.RP-1303.bam 24715994767 BAM NA 90062731-21cb-411a-aa06-8d645b53633d 4e4b5bb3703f9326579a013b4dc641a8 hg19 Blood Derived Normal C3N-05911-31 +C3N-05911.WXS.T C3N-05911 LSCC WXS tumor CPT0384280006 CPT0384280006.WholeExome.RP-1303.bam 31272418772 BAM NA c88fe497-d5ef-4b4a-a28e-52f6e4d6834f d01995d54f1ea43faaaf551c1d0411de hg19 Primary Tumor C3N-05911-02 C3N-05914.MethArray.Green.A C3N-05914 LSCC Methylation Array tissue_normal CPT0322020006 204372030090_R07C01_Grn.idat 13677880 IDAT Green d0164af3-cefb-46d3-b903-c0b749106a98 31382a95b6296dd7c5cf380e9ea81842 NA Solid Tissue Normal C3N-05914-09 C3N-05914.MethArray.Green.T C3N-05914 LSCC Methylation Array tumor CPT0322010006 204367490090_R04C01_Grn.idat 13677885 IDAT Green 510ff8df-45b6-4d5e-b111-4e903d5bb900 99c11d9a89f102ac8fe9558ebb6013d0 NA Primary Tumor C3N-05914-07 C3N-05914.MethArray.Red.A C3N-05914 LSCC Methylation Array tissue_normal CPT0322020006 204372030090_R07C01_Red.idat 13677880 IDAT Red d760444a-9029-4c3c-a9f5-8fc189c55243 9557107e7fd0e94d2ebb4cf77acca921 NA Solid Tissue Normal C3N-05914-09