From 678f6ded59c0f0fe651046b9c2e73baf5fbe5e7a Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Fri, 8 Oct 2021 17:30:34 -0500 Subject: [PATCH] Download of batch katmai_204 * RNA-Seq: 0.9896 Tb in 204 files * Work dir: /diskmnt/Projects/cptac_scratch/CPTAC3.workflow/import.Y3/20211007.katmai_204 --- BamMap/katmai.BamMap.dat | 204 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 204 insertions(+) diff --git a/BamMap/katmai.BamMap.dat b/BamMap/katmai.BamMap.dat index 00a4a62..6d64064 100644 --- a/BamMap/katmai.BamMap.dat +++ b/BamMap/katmai.BamMap.dat @@ -2107,6 +2107,9 @@ C3L-01210.MethArray.Green.Tbm C3L-01210 AML Methylation Array tumor_bone_marrow C3L-01210.MethArray.Red.Tbm C3L-01210 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/47bb6375-8859-4fab-b190-62737a6bf05c/203561450106_R05C01_Red.idat 13676216 IDAT NA 47bb6375-8859-4fab-b190-62737a6bf05c katmai C3L-01210.miRNA-Seq.Tbm C3L-01210 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/de24c088-fdd7-4713-99a7-63cfe077d51e/190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L001_R1_001.unaln.bam 192662894 BAM NA de24c088-fdd7-4713-99a7-63cfe077d51e katmai C3L-01232.miRNA-Seq.T.hg38 C3L-01232 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/44b43e7e-3843-4584-9693-3992f1243359/d7d2ec7d-2dd5-4495-a268-59b938e3b56a_mirnaseq_gdc_realn.bam 448941138 BAM hg38 44b43e7e-3843-4584-9693-3992f1243359 katmai +C3L-01232.RNA-Seq.genomic.T.hg38 C3L-01232 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/01737134-1c8b-48aa-8cba-defbd0548e5f/8506b8cb-e38d-4c37-8ab5-a2d8667967b8.rna_seq.genomic.gdc_realn.bam 7909474308 BAM hg38 01737134-1c8b-48aa-8cba-defbd0548e5f katmai +C3L-01232.RNA-Seq.R1.T C3L-01232 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1b412bf7-dfe6-46ce-8351-540dfc2698d5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ NA 1b412bf7-dfe6-46ce-8351-540dfc2698d5 katmai +C3L-01232.RNA-Seq.R2.T C3L-01232 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/64276f84-695c-4a6a-bde8-0b0378f17656/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ NA 64276f84-695c-4a6a-bde8-0b0378f17656 katmai C3L-01237.MethArray.Green.A C3L-01237 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7d9b376f-b14f-44de-8271-d469b55c8890/203273200155_R03C01_Grn.idat 13676206 IDAT NA 7d9b376f-b14f-44de-8271-d469b55c8890 katmai C3L-01237.MethArray.Green.T C3L-01237 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2e856fcc-39d2-490e-803d-75e0170e82e7/203219640047_R01C01_Grn.idat 13676206 IDAT NA 2e856fcc-39d2-490e-803d-75e0170e82e7 katmai C3L-01237.MethArray.Red.A C3L-01237 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4ce881d0-0896-49f4-817e-3cd737ebc658/203273200155_R03C01_Red.idat 13676206 IDAT NA 4ce881d0-0896-49f4-817e-3cd737ebc658 katmai @@ -4136,6 +4139,9 @@ C3L-02643.RNA-Seq.R1.T C3L-02643 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_pri C3L-02643.RNA-Seq.R2.A C3L-02643 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/92f0abf9-21bf-4dd3-a3ad-83c13df95348/190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R2_001.fastq.gz 4514638201 FASTQ NA 92f0abf9-21bf-4dd3-a3ad-83c13df95348 katmai C3L-02643.RNA-Seq.R2.T C3L-02643 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/55901808-5e7b-49b8-8741-2b461333176d/190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R2_001.fastq.gz 3580550859 FASTQ NA 55901808-5e7b-49b8-8741-2b461333176d katmai C3L-02644.miRNA-Seq.T.hg38 C3L-02644 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9db07d7e-0f32-423c-83d6-e1ae2d3d3d0b/0fa0e305-2995-463b-b909-bec0df468cb0_mirnaseq_gdc_realn.bam 222417745 BAM hg38 9db07d7e-0f32-423c-83d6-e1ae2d3d3d0b katmai +C3L-02644.RNA-Seq.genomic.T.hg38 C3L-02644 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/764bd6b3-ca7d-4f24-b2aa-f75318ba57ef/04bfd1da-b467-47c7-868e-b21c7c64e690.rna_seq.genomic.gdc_realn.bam 8694502262 BAM hg38 764bd6b3-ca7d-4f24-b2aa-f75318ba57ef katmai +C3L-02644.RNA-Seq.R1.T C3L-02644 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e7a4ea3c-9561-401b-9378-7ec621b038ea/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R1_001.fastq.gz 3584181669 FASTQ NA e7a4ea3c-9561-401b-9378-7ec621b038ea katmai +C3L-02644.RNA-Seq.R2.T C3L-02644 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/10aec24b-bc0f-4ee3-9179-a94b8da520f4/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ NA 10aec24b-bc0f-4ee3-9179-a94b8da520f4 katmai C3L-02646.MethArray.Green.T C3L-02646 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a6d083c3-1574-488e-9491-a1fa7b2ad366/203219640158_R04C01_Grn.idat 13676216 IDAT NA a6d083c3-1574-488e-9491-a1fa7b2ad366 katmai C3L-02646.MethArray.Red.T C3L-02646 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f4c1332a-6966-4620-951d-20353bd13266/203219640158_R04C01_Red.idat 13676216 IDAT NA f4c1332a-6966-4620-951d-20353bd13266 katmai C3L-02646.miRNA-Seq.T C3L-02646 LSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f91bc2a5-969c-4f31-a63b-33fcb8ad0dc8/190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L001_R1_001.unaln.bam 235807563 BAM NA f91bc2a5-969c-4f31-a63b-33fcb8ad0dc8 katmai @@ -4225,6 +4231,9 @@ C3L-02661.RNA-Seq.R1.T C3L-02661 LUAD RNA-Seq tumor /diskmnt/Projects/cptac_down C3L-02661.RNA-Seq.R2.A C3L-02661 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0a73c3fd-b91a-4933-b213-bcd787861324/190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R2_001.fastq.gz 4231112363 FASTQ NA 0a73c3fd-b91a-4933-b213-bcd787861324 katmai C3L-02661.RNA-Seq.R2.T C3L-02661 LUAD RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dd066b3b-d5c8-45c4-a854-221d47dae8f2/190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R2_001.fastq.gz 5042475468 FASTQ NA dd066b3b-d5c8-45c4-a854-221d47dae8f2 katmai C3L-02662.miRNA-Seq.T.hg38 C3L-02662 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/901bda8c-9af1-4cdc-b9ad-dc3b87519c1c/f7cda4c0-bf0f-46f1-8e41-dd38276704d2_mirnaseq_gdc_realn.bam 222751978 BAM hg38 901bda8c-9af1-4cdc-b9ad-dc3b87519c1c katmai +C3L-02662.RNA-Seq.genomic.T.hg38 C3L-02662 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/41d9a599-bba3-4b21-a55d-7aa4b7d9555e/458d85fa-e41d-49b0-a121-9e3636297a77.rna_seq.genomic.gdc_realn.bam 5822913616 BAM hg38 41d9a599-bba3-4b21-a55d-7aa4b7d9555e katmai +C3L-02662.RNA-Seq.R1.T C3L-02662 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/356afdb9-db72-4527-92b6-80619daf6746/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R1_001.fastq.gz 2651283628 FASTQ NA 356afdb9-db72-4527-92b6-80619daf6746 katmai +C3L-02662.RNA-Seq.R2.T C3L-02662 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/45e95154-6823-4405-a610-9a42d4bc5f10/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ NA 45e95154-6823-4405-a610-9a42d4bc5f10 katmai C3L-02665.MethArray.Green.A C3L-02665 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6d72576a-ee69-4cb9-b497-6c97aece1cce/203220070171_R04C01_Grn.idat 13676216 IDAT NA 6d72576a-ee69-4cb9-b497-6c97aece1cce katmai C3L-02665.MethArray.Green.T C3L-02665 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ca78f25c-fcaa-4d90-bab0-5167fede8e10/203219670118_R05C01_Grn.idat 13676216 IDAT NA ca78f25c-fcaa-4d90-bab0-5167fede8e10 katmai C3L-02665.MethArray.Red.A C3L-02665 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/10d2a675-e327-41e5-9b09-23527ea1c147/203220070171_R04C01_Red.idat 13676216 IDAT NA 10d2a675-e327-41e5-9b09-23527ea1c147 katmai @@ -4699,6 +4708,9 @@ C3L-03371.miRNA-Seq.T C3L-03371 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_down C3L-03371.miRNA-Seq.T.hg38 C3L-03371 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef/dfd78d92-4529-431f-a8a4-7b0c090372ae_mirnaseq_gdc_realn.bam 179976957 BAM hg38 1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef katmai C3L-03371.RNA-Seq.genomic.T.hg38 C3L-03371 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/79a695d8-da31-4943-b5b9-ba26ffb05ad3/5fb51f39-006d-4385-ac89-597f0e5655bb.rna_seq.genomic.gdc_realn.bam 10244148503 BAM hg38 79a695d8-da31-4943-b5b9-ba26ffb05ad3 katmai C3L-03372.miRNA-Seq.T.hg38 C3L-03372 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e97614e1-f3b1-4cdd-a1b0-a63d474ba783/dc89a039-334e-4161-bf3c-fb08ce3dd668_mirnaseq_gdc_realn.bam 282560822 BAM hg38 e97614e1-f3b1-4cdd-a1b0-a63d474ba783 katmai +C3L-03372.RNA-Seq.genomic.T.hg38 C3L-03372 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/802205eb-df2c-482e-bfd7-c12e620d57e0/a908ca1e-7b9f-4761-b9ae-757ca8a97dfe.rna_seq.genomic.gdc_realn.bam 7858278618 BAM hg38 802205eb-df2c-482e-bfd7-c12e620d57e0 katmai +C3L-03372.RNA-Seq.R1.T C3L-03372 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8109363c-1835-4a99-92e2-e83b25a6b90f/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R1_001.fastq.gz 3400877684 FASTQ NA 8109363c-1835-4a99-92e2-e83b25a6b90f katmai +C3L-03372.RNA-Seq.R2.T C3L-03372 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/650b80e4-de52-493d-98b9-8ba98fbf901b/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ NA 650b80e4-de52-493d-98b9-8ba98fbf901b katmai C3L-03378.MethArray.Green.A C3L-03378 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8c8121bd-3054-4f6e-96b2-308969eef29b/203219650047_R07C01_Grn.idat 13676206 IDAT NA 8c8121bd-3054-4f6e-96b2-308969eef29b katmai C3L-03378.MethArray.Green.T C3L-03378 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e0486f30-6012-4751-ae3d-87e7c4be7cb7/203271740119_R02C01_Grn.idat 13676206 IDAT NA e0486f30-6012-4751-ae3d-87e7c4be7cb7 katmai C3L-03378.MethArray.Red.A C3L-03378 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d7dd3702-b506-4b4f-9822-aeb1d9fed0b8/203219650047_R07C01_Red.idat 13676206 IDAT NA d7dd3702-b506-4b4f-9822-aeb1d9fed0b8 katmai @@ -4712,6 +4724,9 @@ C3L-03378.RNA-Seq.R1.T C3L-03378 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_dow C3L-03378.RNA-Seq.R2.A C3L-03378 HNSCC RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4dd11db-f583-4498-ba79-381e045765a7/190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 4035185144 FASTQ NA e4dd11db-f583-4498-ba79-381e045765a7 katmai C3L-03378.RNA-Seq.R2.T C3L-03378 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/61f672cd-e63d-4e8d-b501-ea42b0e04989/190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R2_001.fastq.gz 5384513755 FASTQ NA 61f672cd-e63d-4e8d-b501-ea42b0e04989 katmai C3L-03385.miRNA-Seq.T.hg38 C3L-03385 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b4276839-8fa0-4b36-91ec-123ccf100dab/e6fad453-db9d-466c-b35a-d4b2051bf395_mirnaseq_gdc_realn.bam 415432118 BAM hg38 b4276839-8fa0-4b36-91ec-123ccf100dab katmai +C3L-03385.RNA-Seq.genomic.T.hg38 C3L-03385 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/db6a35a2-3feb-4226-916e-500da54a58f1/058a2af4-2e1a-42e2-8c0e-ef2089320e51.rna_seq.genomic.gdc_realn.bam 7672558806 BAM hg38 db6a35a2-3feb-4226-916e-500da54a58f1 katmai +C3L-03385.RNA-Seq.R1.T C3L-03385 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ NA fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 katmai +C3L-03385.RNA-Seq.R2.T C3L-03385 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bad51e82-edda-4dae-9ae2-a378a2c50866/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ NA bad51e82-edda-4dae-9ae2-a378a2c50866 katmai C3L-03387.MethArray.Green.T C3L-03387 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d2f2840a-3282-4bdf-9146-4703151b0f2e/203271750057_R04C01_Grn.idat 13676206 IDAT NA d2f2840a-3282-4bdf-9146-4703151b0f2e katmai C3L-03387.MethArray.Red.T C3L-03387 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0a13a70b-1834-49c7-bb4a-b8577607a969/203271750057_R04C01_Red.idat 13676206 IDAT NA 0a13a70b-1834-49c7-bb4a-b8577607a969 katmai C3L-03387.miRNA-Seq.T C3L-03387 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/668b7402-385a-4e7e-b67a-b0512613f1cf/190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L006_R1_001.unaln.bam 306438351 BAM NA 668b7402-385a-4e7e-b67a-b0512613f1cf katmai @@ -4948,8 +4963,17 @@ C3L-03728.RNA-Seq.genomic.T.hg38 C3L-03728 GBM RNA-Seq tumor /diskmnt/Projects/c C3L-03728.RNA-Seq.R1.T C3L-03728 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b4baf937-60b5-42f9-a33e-1209aa16242b/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ NA b4baf937-60b5-42f9-a33e-1209aa16242b katmai C3L-03728.RNA-Seq.R2.T C3L-03728 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1c99ba97-600a-4b1f-8896-eaa03fcb0372/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ NA 1c99ba97-600a-4b1f-8896-eaa03fcb0372 katmai C3L-03733.miRNA-Seq.T.hg38 C3L-03733 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/706c4a4d-10a9-444a-9a5f-c768b944806d/77bec3e5-595f-420f-a23b-59bffbcccf44_mirnaseq_gdc_realn.bam 246530370 BAM hg38 706c4a4d-10a9-444a-9a5f-c768b944806d katmai +C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a605a275-a926-4536-8d33-362729a6d51d/97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.genomic.gdc_realn.bam 8072691075 BAM hg38 a605a275-a926-4536-8d33-362729a6d51d katmai +C3L-03733.RNA-Seq.R1.T C3L-03733 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d3c8b80a-f15c-47ad-927e-96483a71a4ac/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ NA d3c8b80a-f15c-47ad-927e-96483a71a4ac katmai +C3L-03733.RNA-Seq.R2.T C3L-03733 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d68a3a3f-d8d9-488f-b581-3eb6bf3c545f/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ NA d68a3a3f-d8d9-488f-b581-3eb6bf3c545f katmai C3L-03735.miRNA-Seq.T.hg38 C3L-03735 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bcadc513-5cc4-4fcd-a3fc-4cd9f26e1265/ccc75cf4-aaac-47ab-8dd1-9fb1b8e8c38a_mirnaseq_gdc_realn.bam 290946160 BAM hg38 bcadc513-5cc4-4fcd-a3fc-4cd9f26e1265 katmai +C3L-03735.RNA-Seq.genomic.T.hg38 C3L-03735 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8edb4f7d-485d-47f4-8fa8-03a82a74dccf/1eac19a8-6237-40cf-8e7f-e1ab263dbd54.rna_seq.genomic.gdc_realn.bam 8407392533 BAM hg38 8edb4f7d-485d-47f4-8fa8-03a82a74dccf katmai +C3L-03735.RNA-Seq.R1.T C3L-03735 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ NA fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 katmai +C3L-03735.RNA-Seq.R2.T C3L-03735 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0552d99d-65f1-45ec-8a79-41d6de621a90/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ NA 0552d99d-65f1-45ec-8a79-41d6de621a90 katmai C3L-03740.miRNA-Seq.T.hg38 C3L-03740 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1c4158b3-be2d-42ce-a13e-1df099134333/15d9eea2-4c08-49f3-99e8-e7423a98396f_mirnaseq_gdc_realn.bam 327607910 BAM hg38 1c4158b3-be2d-42ce-a13e-1df099134333 katmai +C3L-03740.RNA-Seq.genomic.T.hg38 C3L-03740 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5a6eb036-e744-455f-b433-cde419848ce5/11f62fc8-b09f-42b4-9a7d-7c957dffa4ae.rna_seq.genomic.gdc_realn.bam 8338581698 BAM hg38 5a6eb036-e744-455f-b433-cde419848ce5 katmai +C3L-03740.RNA-Seq.R1.T C3L-03740 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/545a4b63-a08b-42bf-93f8-6b9faa29e42d/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ NA 545a4b63-a08b-42bf-93f8-6b9faa29e42d katmai +C3L-03740.RNA-Seq.R2.T C3L-03740 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/04802ae4-6a8a-400d-87e5-2822568997c5/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ NA 04802ae4-6a8a-400d-87e5-2822568997c5 katmai C3L-03743.MethArray.Green.A C3L-03743 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a0b86526-3f62-471e-af2b-34ad8bcd9f70/203561620043_R07C01_Grn.idat 13676211 IDAT NA a0b86526-3f62-471e-af2b-34ad8bcd9f70 katmai C3L-03743.MethArray.Green.T C3L-03743 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1902a272-deea-4f6d-b9f0-e2c48eafe7e2/203561450102_R06C01_Grn.idat 13676236 IDAT NA 1902a272-deea-4f6d-b9f0-e2c48eafe7e2 katmai C3L-03743.MethArray.Red.A C3L-03743 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2be6a8ab-199a-4d3d-8d75-dfb59df61b67/203561620043_R07C01_Red.idat 13676211 IDAT NA 2be6a8ab-199a-4d3d-8d75-dfb59df61b67 katmai @@ -5142,6 +5166,9 @@ C3L-04033.RNA-Seq.R1.T C3L-04033 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_pri C3L-04033.RNA-Seq.R2.A C3L-04033 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/e8886846-49e3-430a-bcd5-7f40e1cc1523/190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R2_001.fastq.gz 3981553315 FASTQ NA e8886846-49e3-430a-bcd5-7f40e1cc1523 katmai C3L-04033.RNA-Seq.R2.T C3L-04033 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/a865155a-4759-416f-a3d1-366b0397caf2/190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R2_001.fastq.gz 5366115132 FASTQ NA a865155a-4759-416f-a3d1-366b0397caf2 katmai C3L-04036.miRNA-Seq.T.hg38 C3L-04036 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9fe7adc5-5c84-4e2a-b9c8-c71e924a05d5/4a878582-42a5-4ea9-aa7f-92e81a823fb5_mirnaseq_gdc_realn.bam 261066376 BAM hg38 9fe7adc5-5c84-4e2a-b9c8-c71e924a05d5 katmai +C3L-04036.RNA-Seq.genomic.T.hg38 C3L-04036 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/788d43ae-025b-49c5-8df2-210e1ba25ee2/773595a3-f616-4fc0-a489-8609f09ffc76.rna_seq.genomic.gdc_realn.bam 8946117829 BAM hg38 788d43ae-025b-49c5-8df2-210e1ba25ee2 katmai +C3L-04036.RNA-Seq.R1.T C3L-04036 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4ad5e390-ef2e-4370-a0fa-de8d0c112f8b/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ NA 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b katmai +C3L-04036.RNA-Seq.R2.T C3L-04036 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/180a4380-addf-4a1a-98bd-e75a7b5982da/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ NA 180a4380-addf-4a1a-98bd-e75a7b5982da katmai C3L-04037.MethArray.Green.T C3L-04037 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dadbd758-9fb5-4aca-84cb-9d77c673053e/203561450114_R03C01_Grn.idat 13676226 IDAT NA dadbd758-9fb5-4aca-84cb-9d77c673053e katmai C3L-04037.MethArray.Red.T C3L-04037 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/29789a48-78fb-4141-9f50-3060d5a92256/203561450114_R03C01_Red.idat 13676226 IDAT NA 29789a48-78fb-4141-9f50-3060d5a92256 katmai C3L-04037.miRNA-Seq.A C3L-04037 LUAD miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ea2d884b-fc85-4da5-92e1-16bcf2ef3bd4/190722_UNC31-K00269_0234_AH7VGTBBXY_CGTACG_S18_L007_R1_001.unaln.bam 180452836 BAM NA ea2d884b-fc85-4da5-92e1-16bcf2ef3bd4 katmai @@ -5151,6 +5178,9 @@ C3L-04037.RNA-Seq.R1.T C3L-04037 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_pri C3L-04037.RNA-Seq.R2.A C3L-04037 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/16095216-8046-4e3f-a7de-1846f17d9a36/190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R2_001.fastq.gz 3796085160 FASTQ NA 16095216-8046-4e3f-a7de-1846f17d9a36 katmai C3L-04037.RNA-Seq.R2.T C3L-04037 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/1cdf4feb-6bae-499f-bc7c-c40ceb20f771/190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R2_001.fastq.gz 4973554677 FASTQ NA 1cdf4feb-6bae-499f-bc7c-c40ceb20f771 katmai C3L-04038.miRNA-Seq.T.hg38 C3L-04038 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/2eb20cbb-3808-4d16-83bb-f7e01ca86189/7dd51466-f17c-4da6-afd8-5bfb2986eccc_mirnaseq_gdc_realn.bam 198964432 BAM hg38 2eb20cbb-3808-4d16-83bb-f7e01ca86189 katmai +C3L-04038.RNA-Seq.genomic.T.hg38 C3L-04038 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/be00e005-45d6-4cc0-98ba-f0a1fd061d59/8518c8ed-d854-4604-9d42-c7969d02bb4f.rna_seq.genomic.gdc_realn.bam 7518490162 BAM hg38 be00e005-45d6-4cc0-98ba-f0a1fd061d59 katmai +C3L-04038.RNA-Seq.R1.T C3L-04038 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4b1047c2-0ebd-425a-bbb5-558034d20ee0/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ NA 4b1047c2-0ebd-425a-bbb5-558034d20ee0 katmai +C3L-04038.RNA-Seq.R2.T C3L-04038 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/432fbf58-dc9c-45c4-aad4-ccb291b8c512/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ NA 432fbf58-dc9c-45c4-aad4-ccb291b8c512 katmai C3L-04040.MethArray.Green.T C3L-04040 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8548dfe6-86b6-4a60-b533-25a67c025fc0/203561450099_R04C01_Grn.idat 13676216 IDAT NA 8548dfe6-86b6-4a60-b533-25a67c025fc0 katmai C3L-04040.MethArray.Red.T C3L-04040 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/408b4b68-6703-44b6-aee4-78bfdbd59773/203561450099_R04C01_Red.idat 13676216 IDAT NA 408b4b68-6703-44b6-aee4-78bfdbd59773 katmai C3L-04040.miRNA-Seq.T C3L-04040 LUAD miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3848f7e6-5630-4da2-80e2-95dc378b59f2/190722_UNC31-K00269_0234_AH7VGTBBXY_CTCAGA_S33_L004_R1_001.unaln.bam 195919013 BAM NA 3848f7e6-5630-4da2-80e2-95dc378b59f2 katmai @@ -5191,7 +5221,13 @@ C3L-04081.MethArray.Red.T C3L-04081 GBM Methylation Array tumor /diskmnt/Project C3L-04081.RNA-Seq.R1.T C3L-04081 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ff00dd51-d902-4563-b623-786e9f78aaf5/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ NA ff00dd51-d902-4563-b623-786e9f78aaf5 katmai C3L-04081.RNA-Seq.R2.T C3L-04081 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bdef277c-4632-450b-8030-037e3dbe8b32/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ NA bdef277c-4632-450b-8030-037e3dbe8b32 katmai C3L-04082.miRNA-Seq.T.hg38 C3L-04082 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f3af9903-c085-4e9e-b733-10b15ef81da3/015db4d7-81d1-47e6-b5ab-da7771bbbb55_mirnaseq_gdc_realn.bam 259069258 BAM hg38 f3af9903-c085-4e9e-b733-10b15ef81da3 katmai +C3L-04082.RNA-Seq.genomic.T.hg38 C3L-04082 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/38466396-31ce-421c-b8ff-9e626d14b953/712c9a2f-519e-4be4-b702-d1d00e50e53b.rna_seq.genomic.gdc_realn.bam 9308398713 BAM hg38 38466396-31ce-421c-b8ff-9e626d14b953 katmai +C3L-04082.RNA-Seq.R1.T C3L-04082 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ec4c1755-cc9a-44e5-a27e-f2dfb20759aa/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R1_001.fastq.gz 4248024679 FASTQ NA ec4c1755-cc9a-44e5-a27e-f2dfb20759aa katmai +C3L-04082.RNA-Seq.R2.T C3L-04082 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5f246b0c-555f-40f6-8164-cb5299028ec0/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ NA 5f246b0c-555f-40f6-8164-cb5299028ec0 katmai C3L-04083.miRNA-Seq.T.hg38 C3L-04083 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3160a1e1-b57a-4f65-b463-91727f0bc175/da4f8b93-3997-4daa-8342-c2165079fd1d_mirnaseq_gdc_realn.bam 262845496 BAM hg38 3160a1e1-b57a-4f65-b463-91727f0bc175 katmai +C3L-04083.RNA-Seq.genomic.T.hg38 C3L-04083 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/2908a872-7867-4a32-b3eb-8df4a3ae90da/1ea78b18-dc8e-4a37-b985-c34a4522b288.rna_seq.genomic.gdc_realn.bam 8393959893 BAM hg38 2908a872-7867-4a32-b3eb-8df4a3ae90da katmai +C3L-04083.RNA-Seq.R1.T C3L-04083 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5549791b-5875-433f-a85e-980a44bb3310/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ NA 5549791b-5875-433f-a85e-980a44bb3310 katmai +C3L-04083.RNA-Seq.R2.T C3L-04083 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/21ee205d-ff01-4791-82f7-e4b0f801a099/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ NA 21ee205d-ff01-4791-82f7-e4b0f801a099 katmai C3L-04084.MethArray.Green.T C3L-04084 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fe040214-39c3-434a-85e5-db58d56ddcfd/203219670147_R08C01_Grn.idat 13676236 IDAT NA fe040214-39c3-434a-85e5-db58d56ddcfd katmai C3L-04084.MethArray.Red.T C3L-04084 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3e05fac8-22b3-46b3-b9ef-97bf372abed8/203219670147_R08C01_Red.idat 13676236 IDAT NA 3e05fac8-22b3-46b3-b9ef-97bf372abed8 katmai C3L-04084.miRNA-Seq.T C3L-04084 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cdf031a1-492b-44b0-a821-90f969c5c7df/190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L003_R1_001.unaln.bam 203306244 BAM NA cdf031a1-492b-44b0-a821-90f969c5c7df katmai @@ -5200,8 +5236,17 @@ C3L-04084.RNA-Seq.genomic.T.hg38 C3L-04084 GBM RNA-Seq tumor /diskmnt/Projects/c C3L-04084.RNA-Seq.R1.T C3L-04084 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b2c130ea-b93b-4fa3-9d65-ec453849df62/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ NA b2c130ea-b93b-4fa3-9d65-ec453849df62 katmai C3L-04084.RNA-Seq.R2.T C3L-04084 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5862426d-2acc-420a-92be-9a0bbfca35d4/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ NA 5862426d-2acc-420a-92be-9a0bbfca35d4 katmai C3L-04085.miRNA-Seq.T.hg38 C3L-04085 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9ec75e7f-e177-4d27-96ab-894f82b7dc3f/7c66c6f6-c15c-4849-890e-cfc7f177969b_mirnaseq_gdc_realn.bam 323431402 BAM hg38 9ec75e7f-e177-4d27-96ab-894f82b7dc3f katmai +C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/2e1e8d8d-b8a0-4b45-90f5-39bbffe76738/0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.genomic.gdc_realn.bam 9274069937 BAM hg38 2e1e8d8d-b8a0-4b45-90f5-39bbffe76738 katmai +C3L-04085.RNA-Seq.R1.T C3L-04085 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/25f5bea4-fef4-4378-9ccb-8a5befebf88a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ NA 25f5bea4-fef4-4378-9ccb-8a5befebf88a katmai +C3L-04085.RNA-Seq.R2.T C3L-04085 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f0486b67-d5ff-4ae5-97ff-218d95b1e496/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ NA f0486b67-d5ff-4ae5-97ff-218d95b1e496 katmai C3L-04090.miRNA-Seq.T.hg38 C3L-04090 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4f77b53c-7b32-42b1-9ff3-eac29474ec55/81f20c51-e19d-4cb4-a74d-59c4aff9a5c9_mirnaseq_gdc_realn.bam 259059313 BAM hg38 4f77b53c-7b32-42b1-9ff3-eac29474ec55 katmai +C3L-04090.RNA-Seq.genomic.T.hg38 C3L-04090 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e1133e04-81e3-410a-baf9-3d8755f37b5f/ced18db1-7819-42ca-9bfc-e97c73e17a6e.rna_seq.genomic.gdc_realn.bam 10697459190 BAM hg38 e1133e04-81e3-410a-baf9-3d8755f37b5f katmai +C3L-04090.RNA-Seq.R1.T C3L-04090 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9a8aec46-4acd-4c73-96c3-ab521a638114/200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R1_001.fastq.gz 4945213572 FASTQ NA 9a8aec46-4acd-4c73-96c3-ab521a638114 katmai +C3L-04090.RNA-Seq.R2.T C3L-04090 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c3e5d01b-6efa-4a68-9f27-d3d6955b01e5/200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R2_001.fastq.gz 5597226556 FASTQ NA c3e5d01b-6efa-4a68-9f27-d3d6955b01e5 katmai C3L-04213.miRNA-Seq.T.hg38 C3L-04213 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5a233130-f032-4f93-a4aa-a587f6b89b81/5bdfbd50-8f9c-4421-afae-ad61bea3cbf7_mirnaseq_gdc_realn.bam 273383199 BAM hg38 5a233130-f032-4f93-a4aa-a587f6b89b81 katmai +C3L-04213.RNA-Seq.genomic.T.hg38 C3L-04213 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/50377fea-2c51-44b2-99ac-23703e4839f0/21899df6-9f52-4e05-bd84-9c6665cd58fb.rna_seq.genomic.gdc_realn.bam 7551598182 BAM hg38 50377fea-2c51-44b2-99ac-23703e4839f0 katmai +C3L-04213.RNA-Seq.R1.T C3L-04213 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3a18317d-3520-42dc-8003-f9561853b8dc/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ NA 3a18317d-3520-42dc-8003-f9561853b8dc katmai +C3L-04213.RNA-Seq.R2.T C3L-04213 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fb64ce39-84ad-40df-801d-f1e1146356a0/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ NA fb64ce39-84ad-40df-801d-f1e1146356a0 katmai C3L-04241.MethArray.Green.Tbm C3L-04241 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/18477cec-d0f7-42f5-8ec5-a2f19873bead/203561450068_R05C01_Grn.idat 13676211 IDAT NA 18477cec-d0f7-42f5-8ec5-a2f19873bead katmai C3L-04241.MethArray.Red.Tbm C3L-04241 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5c9d3c73-a701-42b9-9d1a-4b8ceddb9975/203561450068_R05C01_Red.idat 13676211 IDAT NA 5c9d3c73-a701-42b9-9d1a-4b8ceddb9975 katmai C3L-04241.miRNA-Seq.Tbm C3L-04241 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b7b2e8bc-ff9d-4bbf-9d6a-89ece0597b83/190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L003_R1_001.unaln.bam 200898373 BAM NA b7b2e8bc-ff9d-4bbf-9d6a-89ece0597b83 katmai @@ -5221,6 +5266,9 @@ C3L-04265.MethArray.Green.Tbm C3L-04265 AML Methylation Array tumor_bone_marrow C3L-04265.MethArray.Red.Tbm C3L-04265 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c92414fe-493f-457d-82b2-fd95e0cecdee/203561450102_R05C01_Red.idat 13676236 IDAT NA c92414fe-493f-457d-82b2-fd95e0cecdee katmai C3L-04265.miRNA-Seq.Tbm C3L-04265 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b9cc71f0-f4ff-45e5-822a-d9ab70266015/190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L002_R1_001.unaln.bam 269073776 BAM NA b9cc71f0-f4ff-45e5-822a-d9ab70266015 katmai C3L-04339.miRNA-Seq.T.hg38 C3L-04339 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d62b8902-1cb3-446d-afbf-293f4c5acbce/a135d303-2474-48c4-bff0-0f7b8c8021b6_mirnaseq_gdc_realn.bam 427460534 BAM hg38 d62b8902-1cb3-446d-afbf-293f4c5acbce katmai +C3L-04339.RNA-Seq.genomic.T.hg38 C3L-04339 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a12c26c0-0b3e-4acd-849b-77b4e56b7ace/8d54b4ab-a634-4b91-8c04-164d468bbd17.rna_seq.genomic.gdc_realn.bam 5986583068 BAM hg38 a12c26c0-0b3e-4acd-849b-77b4e56b7ace katmai +C3L-04339.RNA-Seq.R1.T C3L-04339 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c6a9244a-4ab2-4f78-be63-b74401e4b903/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ NA c6a9244a-4ab2-4f78-be63-b74401e4b903 katmai +C3L-04339.RNA-Seq.R2.T C3L-04339 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1ad6b56f-857b-4e87-ba96-77141a60b898/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ NA 1ad6b56f-857b-4e87-ba96-77141a60b898 katmai C3L-04354.MethArray.Green.A C3L-04354 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/284f369f-50bf-4ac8-9bfb-dbd7f09d1b30/203220070102_R03C01_Grn.idat 13676206 IDAT NA 284f369f-50bf-4ac8-9bfb-dbd7f09d1b30 katmai C3L-04354.MethArray.Green.T C3L-04354 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2e6836a3-25e3-4f23-aa87-d2e344b21c63/203271750047_R06C01_Grn.idat 13676206 IDAT NA 2e6836a3-25e3-4f23-aa87-d2e344b21c63 katmai C3L-04354.MethArray.Red.A C3L-04354 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a86adc96-b0e3-49f4-b0a6-8a6c71db02a3/203220070102_R03C01_Red.idat 13676206 IDAT NA a86adc96-b0e3-49f4-b0a6-8a6c71db02a3 katmai @@ -5232,7 +5280,13 @@ C3L-04354.RNA-Seq.genomic.T.hg38 C3L-04354 HNSCC RNA-Seq tumor /diskmnt/Projects C3L-04354.RNA-Seq.R1.T C3L-04354 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/509c74b9-0387-4e6e-9a34-df82a0e21c15/190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ NA 509c74b9-0387-4e6e-9a34-df82a0e21c15 katmai C3L-04354.RNA-Seq.R2.T C3L-04354 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2d2bdec4-4dc8-4305-bca9-d20ad509cfbb/190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4794346110 FASTQ NA 2d2bdec4-4dc8-4305-bca9-d20ad509cfbb katmai C3L-04359.miRNA-Seq.T.hg38 C3L-04359 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/627019e3-a8ed-43a8-93c3-f84c81f0c47e/69909312-f440-473d-bea5-cb1a6f0da238_mirnaseq_gdc_realn.bam 361913473 BAM hg38 627019e3-a8ed-43a8-93c3-f84c81f0c47e katmai +C3L-04359.RNA-Seq.genomic.T.hg38 C3L-04359 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d6c31cec-b8ca-47ee-b5e6-4ad4195ea5a0/1181004a-df62-4d13-bdb2-27a01a335e1f.rna_seq.genomic.gdc_realn.bam 8260896091 BAM hg38 d6c31cec-b8ca-47ee-b5e6-4ad4195ea5a0 katmai +C3L-04359.RNA-Seq.R1.T C3L-04359 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b42d0852-cae1-4758-a678-bc012f13aea9/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ NA b42d0852-cae1-4758-a678-bc012f13aea9 katmai +C3L-04359.RNA-Seq.R2.T C3L-04359 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/88640d20-f2e8-42d8-a9aa-eb03821c31f7/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ NA 88640d20-f2e8-42d8-a9aa-eb03821c31f7 katmai C3L-04362.miRNA-Seq.T.hg38 C3L-04362 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a506ff9c-db7b-44b2-a981-d3b199e42133/dad677bc-13f3-463b-8645-8b0d2b7522a1_mirnaseq_gdc_realn.bam 243210995 BAM hg38 a506ff9c-db7b-44b2-a981-d3b199e42133 katmai +C3L-04362.RNA-Seq.genomic.T.hg38 C3L-04362 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9667a93e-476e-4113-833f-3d7167c4c09a/a42ade17-692c-4c0b-aba9-d2f6c7398f2f.rna_seq.genomic.gdc_realn.bam 9084568025 BAM hg38 9667a93e-476e-4113-833f-3d7167c4c09a katmai +C3L-04362.RNA-Seq.R1.T C3L-04362 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ NA 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c katmai +C3L-04362.RNA-Seq.R2.T C3L-04362 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/710ec59e-1735-4dd5-ba70-ce35329cac5c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ NA 710ec59e-1735-4dd5-ba70-ce35329cac5c katmai C3L-04365.MethArray.Green.A C3L-04365 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/edfd76df-75d4-4c67-a864-6a49c47596ab/203561620008_R02C01_Grn.idat 13676236 IDAT NA edfd76df-75d4-4c67-a864-6a49c47596ab katmai C3L-04365.MethArray.Green.T C3L-04365 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/175ed898-0663-4be9-a17c-14d56a06ff0d/203561450027_R04C01_Grn.idat 13676221 IDAT NA 175ed898-0663-4be9-a17c-14d56a06ff0d katmai C3L-04365.MethArray.Red.A C3L-04365 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/33f98e53-0b48-4222-8a2b-e98561ade887/203561620008_R02C01_Red.idat 13676236 IDAT NA 33f98e53-0b48-4222-8a2b-e98561ade887 katmai @@ -5256,6 +5310,9 @@ C3L-04391.RNA-Seq.R1.T C3L-04391 LSCC RNA-Seq tumor /diskmnt/Projects/cptac_down C3L-04391.RNA-Seq.R2.A C3L-04391 LSCC RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f7e9960d-2451-4a44-a3a2-539450cf26d1/190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3890281049 FASTQ NA f7e9960d-2451-4a44-a3a2-539450cf26d1 katmai C3L-04391.RNA-Seq.R2.T C3L-04391 LSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/19cba40a-ed47-40ef-a828-905b782c3ecd/190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4468925645 FASTQ NA 19cba40a-ed47-40ef-a828-905b782c3ecd katmai C3L-04392.miRNA-Seq.T.hg38 C3L-04392 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/aed02248-4e4d-4b98-ab13-bc1ed0167520/b7e66dc0-51bd-4974-b239-bcbef53ddef2_mirnaseq_gdc_realn.bam 383688020 BAM hg38 aed02248-4e4d-4b98-ab13-bc1ed0167520 katmai +C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/05a0f689-ebd2-4d68-a658-f3a4b54b391c/0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.genomic.gdc_realn.bam 8483865279 BAM hg38 05a0f689-ebd2-4d68-a658-f3a4b54b391c katmai +C3L-04392.RNA-Seq.R1.T C3L-04392 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d815c7ac-1edc-4e57-a53b-947849bdb025/201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ NA d815c7ac-1edc-4e57-a53b-947849bdb025 katmai +C3L-04392.RNA-Seq.R2.T C3L-04392 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/65353cb8-0cb1-4747-a95d-b11ff0bc7361/201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ NA 65353cb8-0cb1-4747-a95d-b11ff0bc7361 katmai C3L-04473.MethArray.Green.T C3L-04473 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/11f79671-9b2f-4bdb-bde8-b1debfbb5ead/203561450073_R06C01_Grn.idat 13676221 IDAT NA 11f79671-9b2f-4bdb-bde8-b1debfbb5ead katmai C3L-04473.MethArray.Red.T C3L-04473 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4c8a14b6-c02a-4eb7-b3d8-a841b28c35df/203561450073_R06C01_Red.idat 13676221 IDAT NA 4c8a14b6-c02a-4eb7-b3d8-a841b28c35df katmai C3L-04473.miRNA-Seq.T C3L-04473 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/049db0b3-c57d-4212-bf6e-958143c523d3/190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L005_R1_001.unaln.bam 188659787 BAM NA 049db0b3-c57d-4212-bf6e-958143c523d3 katmai @@ -5292,8 +5349,17 @@ C3L-04508.MethArray.Green.Tbm C3L-04508 AML Methylation Array tumor_bone_marrow C3L-04508.MethArray.Red.Tbm C3L-04508 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/674da194-d8a5-473d-a64f-707be22cf5b1/203561620064_R03C01_Red.idat 13676211 IDAT NA 674da194-d8a5-473d-a64f-707be22cf5b1 katmai C3L-04508.miRNA-Seq.Tbm C3L-04508 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ae825b24-4d64-4b5c-90fd-92f3ecb0d3db/190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L003_R1_001.unaln.bam 357516687 BAM NA ae825b24-4d64-4b5c-90fd-92f3ecb0d3db katmai C3L-04537.miRNA-Seq.T.hg38 C3L-04537 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/dae48e44-42b5-4715-b6cc-3bedcb382738/e2c8afe9-1334-41fe-84ea-44ffde88c54b_mirnaseq_gdc_realn.bam 175870324 BAM hg38 dae48e44-42b5-4715-b6cc-3bedcb382738 katmai +C3L-04537.RNA-Seq.genomic.T.hg38 C3L-04537 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d8196edf-2b9a-4dba-8ba8-7b4530bb2abe/4be630a3-2224-4cd9-b794-b78914aebb0d.rna_seq.genomic.gdc_realn.bam 7860174884 BAM hg38 d8196edf-2b9a-4dba-8ba8-7b4530bb2abe katmai +C3L-04537.RNA-Seq.R1.T C3L-04537 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/adf59d70-7072-4025-8eba-01d2dcd6e667/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ NA adf59d70-7072-4025-8eba-01d2dcd6e667 katmai +C3L-04537.RNA-Seq.R2.T C3L-04537 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/cd035eaf-a77f-4b9b-af7d-f4c0af78fac7/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ NA cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 katmai C3L-04539.miRNA-Seq.T.hg38 C3L-04539 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/67bdfc12-9aa8-4108-ab7a-2a3baec90666/d7cf6ba2-3742-4f46-b660-a588eeb66304_mirnaseq_gdc_realn.bam 196058858 BAM hg38 67bdfc12-9aa8-4108-ab7a-2a3baec90666 katmai +C3L-04539.RNA-Seq.genomic.T.hg38 C3L-04539 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b2bea335-4c87-49ec-a7b4-23997e37d747/fb800bbb-4081-4098-afed-17adfcd7a63d.rna_seq.genomic.gdc_realn.bam 7643112637 BAM hg38 b2bea335-4c87-49ec-a7b4-23997e37d747 katmai +C3L-04539.RNA-Seq.R1.T C3L-04539 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9b56e66a-4850-46ec-b519-5379c91aa066/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ NA 9b56e66a-4850-46ec-b519-5379c91aa066 katmai +C3L-04539.RNA-Seq.R2.T C3L-04539 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5a856d4a-bb70-45dc-af41-53ec656ffc10/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ NA 5a856d4a-bb70-45dc-af41-53ec656ffc10 katmai C3L-04731.miRNA-Seq.T.hg38 C3L-04731 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/433f9cf1-b2ca-4468-8451-e0f3a6c74297/27acded0-fbca-4101-ad20-cbb61017cb78_mirnaseq_gdc_realn.bam 178901159 BAM hg38 433f9cf1-b2ca-4468-8451-e0f3a6c74297 katmai +C3L-04731.RNA-Seq.genomic.T.hg38 C3L-04731 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5268ea9c-7745-42ce-a0b7-13e9036bdd89/032a25d4-e1dc-4978-b3e8-4f1839fee34f.rna_seq.genomic.gdc_realn.bam 6524984335 BAM hg38 5268ea9c-7745-42ce-a0b7-13e9036bdd89 katmai +C3L-04731.RNA-Seq.R1.T C3L-04731 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fdcc07bb-3566-4ad0-b8af-832168038559/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ NA fdcc07bb-3566-4ad0-b8af-832168038559 katmai +C3L-04731.RNA-Seq.R2.T C3L-04731 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d82e8a6e-aaca-4d9d-b26e-96046b568d10/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ NA d82e8a6e-aaca-4d9d-b26e-96046b568d10 katmai C3L-04757.MethArray.Green.A C3L-04757 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b06e669b-11f8-4e29-8d33-dfd1cc060a40/203561620077_R02C01_Grn.idat 13676221 IDAT NA b06e669b-11f8-4e29-8d33-dfd1cc060a40 katmai C3L-04757.MethArray.Green.T C3L-04757 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a4377fdc-f9f4-4d08-a587-0b3c21ce8259/203561450008_R03C01_Grn.idat 13676221 IDAT NA a4377fdc-f9f4-4d08-a587-0b3c21ce8259 katmai C3L-04757.MethArray.Red.A C3L-04757 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b822899d-163b-4a64-af1d-b2505db1fcdc/203561620077_R02C01_Red.idat 13676221 IDAT NA b822899d-163b-4a64-af1d-b2505db1fcdc katmai @@ -5332,6 +5398,9 @@ C3L-04791.RNA-Seq.genomic.T.hg38 C3L-04791 HNSCC RNA-Seq tumor /diskmnt/Projects C3L-04791.RNA-Seq.R1.T C3L-04791 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d2458585-b886-4b09-86a0-a0f29977f3af/190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4530786617 FASTQ NA d2458585-b886-4b09-86a0-a0f29977f3af katmai C3L-04791.RNA-Seq.R2.T C3L-04791 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7c1c0732-04b1-46b5-9b86-f1eda6ccc0b3/190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4655993230 FASTQ NA 7c1c0732-04b1-46b5-9b86-f1eda6ccc0b3 katmai C3L-04795.miRNA-Seq.T.hg38 C3L-04795 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/38edfdd0-d6e2-4227-9e62-42dd598e4e88/f44042cb-e293-4f34-884d-4ed796d4d746_mirnaseq_gdc_realn.bam 335243543 BAM hg38 38edfdd0-d6e2-4227-9e62-42dd598e4e88 katmai +C3L-04795.RNA-Seq.genomic.T.hg38 C3L-04795 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4aa51aa8-7d57-461f-8d15-26a00efd76fe/96d5aca4-a5f2-4442-937d-0264f2f4509f.rna_seq.genomic.gdc_realn.bam 7770364713 BAM hg38 4aa51aa8-7d57-461f-8d15-26a00efd76fe katmai +C3L-04795.RNA-Seq.R1.T C3L-04795 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0ff10436-30c0-4571-a5f1-db72929506b8/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ NA 0ff10436-30c0-4571-a5f1-db72929506b8 katmai +C3L-04795.RNA-Seq.R2.T C3L-04795 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d3c4c707-2ecb-44db-9c2b-04a6f624d67f/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ NA d3c4c707-2ecb-44db-9c2b-04a6f624d67f katmai C3L-04815.MethArray.Green.T C3L-04815 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/9d664202-241e-417e-bb35-de2aa6b8e590/204372030087_R06C01_Grn.idat 13677880 IDAT NA 9d664202-241e-417e-bb35-de2aa6b8e590 katmai C3L-04815.MethArray.Red.T C3L-04815 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/18b0a525-b6c9-4f5d-a5b5-ce09c32ecc29/204372030087_R06C01_Red.idat 13677880 IDAT NA 18b0a525-b6c9-4f5d-a5b5-ce09c32ecc29 katmai C3L-04815.miRNA-Seq.T.hg38 C3L-04815 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/82abe514-cbfb-412c-80b7-8f400617119c/1109bbec-d535-4615-a731-41df9b9885b8_mirnaseq_gdc_realn.bam 234959553 BAM hg38 82abe514-cbfb-412c-80b7-8f400617119c katmai @@ -5373,6 +5442,9 @@ C3L-04853.miRNA-Seq.T C3L-04853 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_down C3L-04853.miRNA-Seq.T.hg38 C3L-04853 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6276085d-68b3-4cb0-b4d4-e79967a5934d/46eab201-0f73-4464-9739-5620e92e5e05_mirnaseq_gdc_realn.bam 301461258 BAM hg38 6276085d-68b3-4cb0-b4d4-e79967a5934d katmai C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f000225d-5838-4974-a814-06f07b9733e1/9486a946-d6e0-42d9-961e-a1c14d606a4e.rna_seq.genomic.gdc_realn.bam 8944027681 BAM hg38 f000225d-5838-4974-a814-06f07b9733e1 katmai C3L-05239.miRNA-Seq.T.hg38 C3L-05239 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a5ad09b9-b8a1-4f61-9ab2-50d7e363db09/bc919f06-ae10-44e3-8218-f88fb03e2a9d_mirnaseq_gdc_realn.bam 251913789 BAM hg38 a5ad09b9-b8a1-4f61-9ab2-50d7e363db09 katmai +C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/27038062-dcbd-46a1-9d52-714e8b86af6e/271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.genomic.gdc_realn.bam 7849393604 BAM hg38 27038062-dcbd-46a1-9d52-714e8b86af6e katmai +C3L-05239.RNA-Seq.R1.T C3L-05239 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8161f3a1-1b1a-442f-aaf3-faabd976c99a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ NA 8161f3a1-1b1a-442f-aaf3-faabd976c99a katmai +C3L-05239.RNA-Seq.R2.T C3L-05239 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b2cc1d59-536e-4c59-89df-f6808282e91f/201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ NA b2cc1d59-536e-4c59-89df-f6808282e91f katmai C3L-05386.MethArray.Green.Tpb C3L-05386 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5d69043c-99e9-433a-a3c6-8bccdcf8a503/203561450103_R07C01_Grn.idat 13676216 IDAT NA 5d69043c-99e9-433a-a3c6-8bccdcf8a503 katmai C3L-05386.MethArray.Red.Tpb C3L-05386 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac_downloads_7/GDC_import/data/38f1717f-f595-4d1c-856f-eaa6532f7622/203561450103_R07C01_Red.idat 13676216 IDAT NA 38f1717f-f595-4d1c-856f-eaa6532f7622 katmai C3L-05386.miRNA-Seq.Tpb C3L-05386 AML miRNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b75c03df-2a12-458c-b3a1-a9fcb07de56e/190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L008_R1_001.unaln.bam 274447132 BAM NA b75c03df-2a12-458c-b3a1-a9fcb07de56e katmai @@ -8749,6 +8821,9 @@ C3N-01848.WXS.A.hg38 C3N-01848 UCEC WXS tissue_normal /diskmnt/Projects/cptac_do C3N-01848.WXS.N.hg38 C3N-01848 UCEC WXS blood_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/13124b5f-01ee-4be8-8029-98fd79e0c4b3/edcd95ca-3e65-452b-9345-de6305e24ad7_wxs_gdc_realn.bam 78453362329 BAM hg38 13124b5f-01ee-4be8-8029-98fd79e0c4b3 katmai C3N-01848.WXS.T.hg38 C3N-01848 UCEC WXS tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f27ee995-1030-41d3-b6e6-e2c0251bbd4a/b2c00315-f249-4e89-8999-fffde64e2f8f_wxs_gdc_realn.bam 47310254439 BAM hg38 f27ee995-1030-41d3-b6e6-e2c0251bbd4a katmai C3N-01849.miRNA-Seq.T.hg38 C3N-01849 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c25da38d-81d8-4793-839d-6109462fa3d5/16162ec0-7b2d-40a5-ac4a-bb5b5cb57f5e_mirnaseq_gdc_realn.bam 252060926 BAM hg38 c25da38d-81d8-4793-839d-6109462fa3d5 katmai +C3N-01849.RNA-Seq.genomic.T.hg38 C3N-01849 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bd6147c1-7f48-4e40-a1c1-4f8778251c60/c0404e18-9325-40f5-aeb0-43f86f2b2a32.rna_seq.genomic.gdc_realn.bam 7510139811 BAM hg38 bd6147c1-7f48-4e40-a1c1-4f8778251c60 katmai +C3N-01849.RNA-Seq.R1.T C3N-01849 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/583387e2-75e7-4f09-be36-486effc226fd/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R1_001.fastq.gz 3307839110 FASTQ NA 583387e2-75e7-4f09-be36-486effc226fd katmai +C3N-01849.RNA-Seq.R2.T C3N-01849 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/83d649cc-79e9-457a-9e7f-e0fb46c94f8a/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ NA 83d649cc-79e9-457a-9e7f-e0fb46c94f8a katmai C3N-01850.MethArray.Green.T.RDNA_rw5WW4 C3N-01850 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/986f4467-8c60-472b-b32c-afb23c642578/203219650047_R08C01_Grn.idat 13676206 IDAT NA 986f4467-8c60-472b-b32c-afb23c642578 katmai C3N-01850.MethArray.Red.T.RDNA_rw5WW4 C3N-01850 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0acdbc29-be6b-4d09-a132-c64fb24fa5c8/203219650047_R08C01_Red.idat 13676206 IDAT NA 0acdbc29-be6b-4d09-a132-c64fb24fa5c8 katmai C3N-01850.miRNA-Seq.T.RRNA_oqKWWB C3N-01850 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7060cc1e-8e41-48df-9775-ef103ac0e04e/190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L006_R1_001.unaln.bam 274271010 BAM NA 7060cc1e-8e41-48df-9775-ef103ac0e04e katmai @@ -9632,6 +9707,9 @@ C3N-02256.RNA-Seq.genomic.T.hg38 C3N-02256 GBM RNA-Seq tumor /diskmnt/Projects/c C3N-02256.RNA-Seq.R1.T C3N-02256 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/88d33533-fe80-485b-a2b7-a81ff8729921/181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R1_001.fastq.gz 4445956614 FASTQ NA 88d33533-fe80-485b-a2b7-a81ff8729921 katmai C3N-02256.RNA-Seq.R2.T C3N-02256 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7855be61-2390-40e0-8b9a-54eb82b0de93/181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R2_001.fastq.gz 4826728081 FASTQ NA 7855be61-2390-40e0-8b9a-54eb82b0de93 katmai C3N-02259.miRNA-Seq.T.hg38 C3N-02259 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/97c8d814-ca7e-4c7e-976e-ee8a45b06e39/2229bd80-e569-43c6-a683-c0b2b29de25d_mirnaseq_gdc_realn.bam 184461994 BAM hg38 97c8d814-ca7e-4c7e-976e-ee8a45b06e39 katmai +C3N-02259.RNA-Seq.genomic.T.hg38 C3N-02259 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5e23c3a0-1a7b-4325-b034-8bb41bd1a1e7/c2747497-7a16-4659-8bc7-ff445c40fd17.rna_seq.genomic.gdc_realn.bam 7621239847 BAM hg38 5e23c3a0-1a7b-4325-b034-8bb41bd1a1e7 katmai +C3N-02259.RNA-Seq.R1.T C3N-02259 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/611120e0-9d64-40e8-ad9f-7a7ae8092067/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ NA 611120e0-9d64-40e8-ad9f-7a7ae8092067 katmai +C3N-02259.RNA-Seq.R2.T C3N-02259 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/11e7d48b-1bfe-4892-8eca-6a22a1b8649a/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ NA 11e7d48b-1bfe-4892-8eca-6a22a1b8649a katmai C3N-02261.MethArray.Green.A C3N-02261 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/8070acff-3c77-4c4c-86af-395902462b88/205589730117_R05C01_Grn.idat 13677955 IDAT NA 8070acff-3c77-4c4c-86af-395902462b88 katmai C3N-02261.MethArray.Green.T C3N-02261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/f869f8cf-bcb8-4cdf-affb-efb5054545c3/205549600088_R03C01_Grn.idat 13677955 IDAT NA f869f8cf-bcb8-4cdf-affb-efb5054545c3 katmai C3N-02261.MethArray.Red.A C3N-02261 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/647f7451-d5a5-4a48-b5ca-d914d4920fd7/205589730117_R05C01_Red.idat 13677955 IDAT NA 647f7451-d5a5-4a48-b5ca-d914d4920fd7 katmai @@ -9764,6 +9842,9 @@ C3N-02285.RNA-Seq.R1.T C3N-02285 LSCC RNA-Seq tumor /diskmnt/Projects/cptac_down C3N-02285.RNA-Seq.R2.A C3N-02285 LSCC RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20060cbc-b291-43b9-b1a2-179d33db94df/180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4534947376 FASTQ NA 20060cbc-b291-43b9-b1a2-179d33db94df katmai C3N-02285.RNA-Seq.R2.T C3N-02285 LSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5915e9f4-006f-4912-b6e2-681270b493df/180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R2_001.fastq.gz 3623342067 FASTQ NA 5915e9f4-006f-4912-b6e2-681270b493df katmai C3N-02286.miRNA-Seq.T.hg38 C3N-02286 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/159b1364-2268-4c9e-81b2-82fcd8cd2b33/89e53779-3952-48e8-96f5-c8cf72c56aef_mirnaseq_gdc_realn.bam 215338304 BAM hg38 159b1364-2268-4c9e-81b2-82fcd8cd2b33 katmai +C3N-02286.RNA-Seq.genomic.T.hg38 C3N-02286 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/be8c0783-2239-42d1-8895-f7497e17c9dd/38191a5e-e87a-484f-930e-bd437c06efb4.rna_seq.genomic.gdc_realn.bam 7540226795 BAM hg38 be8c0783-2239-42d1-8895-f7497e17c9dd katmai +C3N-02286.RNA-Seq.R1.T C3N-02286 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/02665bb1-0f40-4959-9017-1d20d7a15ced/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ NA 02665bb1-0f40-4959-9017-1d20d7a15ced katmai +C3N-02286.RNA-Seq.R2.T C3N-02286 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/80bdd1ba-fe88-4d31-b371-bd54b3859722/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ NA 80bdd1ba-fe88-4d31-b371-bd54b3859722 katmai C3N-02288.MethArray.Green.A C3N-02288 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2a8a3e31-31b6-4e2e-8056-a1df8856353a/203219720203_R01C01_Grn.idat 13676221 IDAT NA 2a8a3e31-31b6-4e2e-8056-a1df8856353a katmai C3N-02288.MethArray.Green.T C3N-02288 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9c93e9c3-1b0a-452b-bab7-4625307d62f5/203219650221_R02C01_Grn.idat 13676217 IDAT NA 9c93e9c3-1b0a-452b-bab7-4625307d62f5 katmai C3N-02288.MethArray.Red.A C3N-02288 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/74846311-5323-4e0a-afd6-e3b01a1e0a6f/203219720203_R01C01_Red.idat 13676221 IDAT NA 74846311-5323-4e0a-afd6-e3b01a1e0a6f katmai @@ -10241,6 +10322,9 @@ C3N-02598.miRNA-Seq.T C3N-02598 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_dow C3N-02598.RNA-Seq.R1.T C3N-02598 UCEC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/ed069b3a-4f43-4cf7-9618-7146440a4d5a/190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R1_001.fastq.gz 3501334415 FASTQ NA ed069b3a-4f43-4cf7-9618-7146440a4d5a katmai C3N-02598.RNA-Seq.R2.T C3N-02598 UCEC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/70c7569f-ba60-4436-b121-8e2c7594613c/190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R2_001.fastq.gz 4042694872 FASTQ NA 70c7569f-ba60-4436-b121-8e2c7594613c katmai C3N-02599.miRNA-Seq.T.hg38 C3N-02599 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f8ddc7c6-3319-4b1a-b72d-53c3dd86f395/ec6c6d0e-2b20-4ad9-9cb1-5c7e7fc03453_mirnaseq_gdc_realn.bam 216716399 BAM hg38 f8ddc7c6-3319-4b1a-b72d-53c3dd86f395 katmai +C3N-02599.RNA-Seq.genomic.T.hg38 C3N-02599 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5726bd41-7e8c-4e7e-becd-9e077f590c1b/18d64b7a-d65d-4efa-9adf-014a52ea80a6.rna_seq.genomic.gdc_realn.bam 6978986048 BAM hg38 5726bd41-7e8c-4e7e-becd-9e077f590c1b katmai +C3N-02599.RNA-Seq.R1.T C3N-02599 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/48cfa054-e4e7-4707-8f4f-1464920cd330/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ NA 48cfa054-e4e7-4707-8f4f-1464920cd330 katmai +C3N-02599.RNA-Seq.R2.T C3N-02599 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f34ce994-d55e-49cb-bb17-93e3a4874810/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ NA f34ce994-d55e-49cb-bb17-93e3a4874810 katmai C3N-02631.MethArray.Green.T C3N-02631 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1086a9a9-0c3a-4553-9c5c-ef4c651c4b4d/203561450030_R05C01_Grn.idat 13676216 IDAT NA 1086a9a9-0c3a-4553-9c5c-ef4c651c4b4d katmai C3N-02631.MethArray.Red.T C3N-02631 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/844c57ea-645a-4c82-b89f-3ce088195a8f/203561450030_R05C01_Red.idat 13676216 IDAT NA 844c57ea-645a-4c82-b89f-3ce088195a8f katmai C3N-02631.miRNA-Seq.T C3N-02631 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/62d16d52-db5d-4d6f-9eec-7da85e22851c/190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L004_R1_001.unaln.bam 173046508 BAM NA 62d16d52-db5d-4d6f-9eec-7da85e22851c katmai @@ -10299,8 +10383,17 @@ C3N-02678.miRNA-Seq.T C3N-02678 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_dow C3N-02678.RNA-Seq.R1.T C3N-02678 UCEC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/c83686a4-c3bf-4237-ad36-cc4e3a437299/190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R1_001.fastq.gz 3785854007 FASTQ NA c83686a4-c3bf-4237-ad36-cc4e3a437299 katmai C3N-02678.RNA-Seq.R2.T C3N-02678 UCEC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/12b57388-d7fd-4fa5-962f-4c95af38f9a8/190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R2_001.fastq.gz 4391740200 FASTQ NA 12b57388-d7fd-4fa5-962f-4c95af38f9a8 katmai C3N-02681.miRNA-Seq.T.hg38 C3N-02681 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b32908c3-4bcf-47cb-9b68-002c51ea2866/a1b4b1da-1b16-44a1-89f4-64ea9218c326_mirnaseq_gdc_realn.bam 440358841 BAM hg38 b32908c3-4bcf-47cb-9b68-002c51ea2866 katmai +C3N-02681.RNA-Seq.genomic.T.hg38 C3N-02681 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/963319c6-c658-47cf-bfb8-86e4303901ac/362b386a-b8e1-4b89-b709-cafc2ab29665.rna_seq.genomic.gdc_realn.bam 7420626393 BAM hg38 963319c6-c658-47cf-bfb8-86e4303901ac katmai +C3N-02681.RNA-Seq.R1.T C3N-02681 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a9a4c580-e93e-4331-bcd2-26bd9f24d024/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ NA a9a4c580-e93e-4331-bcd2-26bd9f24d024 katmai +C3N-02681.RNA-Seq.R2.T C3N-02681 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/17f81101-60cd-4f3f-905c-776206e75ed1/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ NA 17f81101-60cd-4f3f-905c-776206e75ed1 katmai C3N-02682.miRNA-Seq.T.hg38 C3N-02682 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0023dbf5-2b24-4578-9392-180ffe74a898/034ae2ee-d3f8-4256-83c1-089148361759_mirnaseq_gdc_realn.bam 252734628 BAM hg38 0023dbf5-2b24-4578-9392-180ffe74a898 katmai +C3N-02682.RNA-Seq.genomic.T.hg38 C3N-02682 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/cc0e65fe-1d19-4938-a144-8ef7ebf8b212/046a7173-367b-48aa-9d9d-983587b46505.rna_seq.genomic.gdc_realn.bam 8910794360 BAM hg38 cc0e65fe-1d19-4938-a144-8ef7ebf8b212 katmai +C3N-02682.RNA-Seq.R1.T C3N-02682 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bdabb589-3cd2-4b0d-9710-b951fc336806/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ NA bdabb589-3cd2-4b0d-9710-b951fc336806 katmai +C3N-02682.RNA-Seq.R2.T C3N-02682 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c36b01fb-a764-4899-8eaa-7df412ad8c7b/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ NA c36b01fb-a764-4899-8eaa-7df412ad8c7b katmai C3N-02683.miRNA-Seq.T.hg38 C3N-02683 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/86cb8c5b-f827-4c92-a8ab-fef3d90b8eb3/2cbef5f3-3bc6-474b-942b-4d9928326d28_mirnaseq_gdc_realn.bam 298296964 BAM hg38 86cb8c5b-f827-4c92-a8ab-fef3d90b8eb3 katmai +C3N-02683.RNA-Seq.genomic.T.hg38 C3N-02683 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f6e5abf1-16d9-40c1-97b3-1b304d2b7dd0/4117e044-e07f-49de-b181-7d5b21882782.rna_seq.genomic.gdc_realn.bam 9610746029 BAM hg38 f6e5abf1-16d9-40c1-97b3-1b304d2b7dd0 katmai +C3N-02683.RNA-Seq.R1.T C3N-02683 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f88b71c6-807d-45d8-bb45-d6f1adb722e4/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ NA f88b71c6-807d-45d8-bb45-d6f1adb722e4 katmai +C3N-02683.RNA-Seq.R2.T C3N-02683 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/86f73dc2-f0b2-4857-9873-09673863a96a/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ NA 86f73dc2-f0b2-4857-9873-09673863a96a katmai C3N-02684.RNA-Seq.R1.A C3N-02684 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/e9d5ecfa-3887-4f7c-876b-e7addf0fa54d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ NA e9d5ecfa-3887-4f7c-876b-e7addf0fa54d katmai C3N-02684.RNA-Seq.R2.A C3N-02684 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/7513f50c-a395-49c5-8076-da5d97a21a2d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ NA 7513f50c-a395-49c5-8076-da5d97a21a2d katmai C3N-02693.MethArray.Green.T C3N-02693 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f2cf96dc-de66-4d59-b395-a40b592b0b13/203273200073_R04C01_Grn.idat 13676206 IDAT NA f2cf96dc-de66-4d59-b395-a40b592b0b13 katmai @@ -10830,7 +10923,13 @@ C3N-03000.miRNA-Seq.T C3N-03000 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_down C3N-03000.miRNA-Seq.T.hg38 C3N-03000 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/275da72e-dfa7-4a39-aec6-ff40785022d2/7272726f-32f1-4225-ae3c-73c022a8b785_mirnaseq_gdc_realn.bam 222829273 BAM hg38 275da72e-dfa7-4a39-aec6-ff40785022d2 katmai C3N-03000.RNA-Seq.genomic.T.hg38 C3N-03000 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1db1bf5b-653c-48fc-ac41-0eb4b8606fea/a3ec4717-b14a-4036-b0db-add6f19d5499.rna_seq.genomic.gdc_realn.bam 8415937790 BAM hg38 1db1bf5b-653c-48fc-ac41-0eb4b8606fea katmai C3N-03001.miRNA-Seq.T.hg38 C3N-03001 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/24b0e422-f608-4908-a1e5-161e44cb2cad/f01b3ee3-eb0d-4faf-9431-51078e0bde67_mirnaseq_gdc_realn.bam 246572830 BAM hg38 24b0e422-f608-4908-a1e5-161e44cb2cad katmai +C3N-03001.RNA-Seq.genomic.T.hg38 C3N-03001 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a72c06bb-a8cc-4e98-80a2-d725739214ba/78b21879-b6b1-4afe-8917-aab98a9ab088.rna_seq.genomic.gdc_realn.bam 9160128609 BAM hg38 a72c06bb-a8cc-4e98-80a2-d725739214ba katmai +C3N-03001.RNA-Seq.R1.T C3N-03001 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1b916065-70cc-431f-923f-2e2305f9491b/200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 3761960687 FASTQ NA 1b916065-70cc-431f-923f-2e2305f9491b katmai +C3N-03001.RNA-Seq.R2.T C3N-03001 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/634a6d31-e1f2-40a7-b9ee-b14c1965bb5d/200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ NA 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d katmai C3N-03003.miRNA-Seq.T.hg38 C3N-03003 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/54d4483f-fa2a-46b0-b9ba-2cc022056c7e/29d318a8-fcc5-430d-a734-e0fd1a07c227_mirnaseq_gdc_realn.bam 266042176 BAM hg38 54d4483f-fa2a-46b0-b9ba-2cc022056c7e katmai +C3N-03003.RNA-Seq.genomic.T.hg38 C3N-03003 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/79db7ae4-f8e8-4d6e-adde-03594acddb75/4ab07cf6-95b8-409f-8d4e-faff9474ad1d.rna_seq.genomic.gdc_realn.bam 7300014612 BAM hg38 79db7ae4-f8e8-4d6e-adde-03594acddb75 katmai +C3N-03003.RNA-Seq.R1.T C3N-03003 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c465924b-72b1-4df5-858a-bdfdc8c0f484/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ NA c465924b-72b1-4df5-858a-bdfdc8c0f484 katmai +C3N-03003.RNA-Seq.R2.T C3N-03003 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b68baa4c-eac8-4981-8f81-936605755b5d/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ NA b68baa4c-eac8-4981-8f81-936605755b5d katmai C3N-03005.MethArray.Green.T C3N-03005 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1887d283-2f63-4ad6-b1de-2aa4a821ceac/203561450073_R02C01_Grn.idat 13676221 IDAT NA 1887d283-2f63-4ad6-b1de-2aa4a821ceac katmai C3N-03005.MethArray.Red.T C3N-03005 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e5caecbf-010c-4977-8534-6911d7450609/203561450073_R02C01_Red.idat 13676221 IDAT NA e5caecbf-010c-4977-8534-6911d7450609 katmai C3N-03005.miRNA-Seq.T C3N-03005 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2551cf95-ff28-4726-ac0c-9821a404d9bc/190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L001_R1_001.unaln.bam 221844926 BAM NA 2551cf95-ff28-4726-ac0c-9821a404d9bc katmai @@ -10923,6 +11022,9 @@ C3N-03021.RNA-Seq.R1.T C3N-03021 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_dow C3N-03021.RNA-Seq.R2.A C3N-03021 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5f94a34-6065-4e26-b24c-4786bdabc87d/190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R2_001.fastq.gz 4999382702 FASTQ NA f5f94a34-6065-4e26-b24c-4786bdabc87d katmai C3N-03021.RNA-Seq.R2.T C3N-03021 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/27aa231e-944d-41fb-9d71-18a2d029842a/190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ NA 27aa231e-944d-41fb-9d71-18a2d029842a katmai C3N-03025.miRNA-Seq.T.hg38 C3N-03025 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8595b7ac-8a46-4859-bd04-100da74c51b1/ea60a154-98b8-4db7-8be8-17e4b8be7d27_mirnaseq_gdc_realn.bam 281649400 BAM hg38 8595b7ac-8a46-4859-bd04-100da74c51b1 katmai +C3N-03025.RNA-Seq.genomic.T.hg38 C3N-03025 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0d54b142-2529-414b-aab0-ad024c94ea62/1905799f-934c-49d6-9e41-ba58c4d616f3.rna_seq.genomic.gdc_realn.bam 7021169075 BAM hg38 0d54b142-2529-414b-aab0-ad024c94ea62 katmai +C3N-03025.RNA-Seq.R1.T C3N-03025 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6a12152f-6b09-4e4b-87a2-deac64ea83a1/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ NA 6a12152f-6b09-4e4b-87a2-deac64ea83a1 katmai +C3N-03025.RNA-Seq.R2.T C3N-03025 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7ff9e556-fa20-4d91-8dc9-b02275783e96/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ NA 7ff9e556-fa20-4d91-8dc9-b02275783e96 katmai C3N-03026.MethArray.Green.A C3N-03026 GBM Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/4849d1ac-a065-4486-bdd3-eb2cf61006d8/205555390119_R06C01_Grn.idat 13677955 IDAT NA 4849d1ac-a065-4486-bdd3-eb2cf61006d8 katmai C3N-03026.MethArray.Red.A C3N-03026 GBM Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/b422de53-d1ac-4a06-a500-7ba88df3e850/205555390119_R06C01_Red.idat 13677955 IDAT NA b422de53-d1ac-4a06-a500-7ba88df3e850 katmai C3N-03026.RNA-Seq.R1.A C3N-03026 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/6cf7ffc2-885e-4bc9-94fb-7d88e689ec88/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ NA 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 katmai @@ -11414,15 +11516,27 @@ C3N-03446.MethArray.Red.A C3N-03446 GBM Methylation Array tissue_normal /diskmnt C3N-03446.RNA-Seq.R1.A C3N-03446 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/5a9e30f7-2202-4950-a643-61f2b2a1579d/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ NA 5a9e30f7-2202-4950-a643-61f2b2a1579d katmai C3N-03446.RNA-Seq.R2.A C3N-03446 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/2c66f195-9484-4900-9338-d02c9392ee59/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ NA 2c66f195-9484-4900-9338-d02c9392ee59 katmai C3N-03448.miRNA-Seq.T.hg38 C3N-03448 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/640768a1-ee61-4959-8019-5b652de1bec9/eeec2ff6-2b25-402c-ad52-d9ab89e5ede0_mirnaseq_gdc_realn.bam 327854229 BAM hg38 640768a1-ee61-4959-8019-5b652de1bec9 katmai +C3N-03448.RNA-Seq.genomic.T.hg38 C3N-03448 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8b141f16-e5be-48cf-b553-8bde4492d514/00fbcb5c-f942-4ccd-9fd4-462356517cd6.rna_seq.genomic.gdc_realn.bam 7963651361 BAM hg38 8b141f16-e5be-48cf-b553-8bde4492d514 katmai +C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3338a3d1-7dfb-47eb-a5f9-d95dce211972/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ NA 3338a3d1-7dfb-47eb-a5f9-d95dce211972 katmai +C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 katmai C3N-03449.miRNA-Seq.T.hg38 C3N-03449 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/22ac38ed-4b1e-4075-9ad1-2b3cbb456f1e/4cc2f843-c740-42b7-967a-6a4d834c3d1a_mirnaseq_gdc_realn.bam 212546070 BAM hg38 22ac38ed-4b1e-4075-9ad1-2b3cbb456f1e katmai +C3N-03449.RNA-Seq.genomic.T.hg38 C3N-03449 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/be8e1c93-d8ff-4f12-88f1-c0ef46827b45/434322c0-d497-4c03-831a-0e133bfc376f.rna_seq.genomic.gdc_realn.bam 6493713308 BAM hg38 be8e1c93-d8ff-4f12-88f1-c0ef46827b45 katmai +C3N-03449.RNA-Seq.R1.T C3N-03449 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d8df9e03-10b6-41a3-972f-b6038ca02881/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ NA d8df9e03-10b6-41a3-972f-b6038ca02881 katmai +C3N-03449.RNA-Seq.R2.T C3N-03449 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/289921b1-b467-487e-ad93-095bdb3834ce/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ NA 289921b1-b467-487e-ad93-095bdb3834ce katmai C3N-03450.MethArray.Green.A C3N-03450 GBM Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/02525a6c-2a58-4f70-8f60-85830a087f06/205555390176_R06C01_Grn.idat 13677955 IDAT NA 02525a6c-2a58-4f70-8f60-85830a087f06 katmai C3N-03450.MethArray.Red.A C3N-03450 GBM Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/5c22a10c-66de-4495-869b-009f24631542/205555390176_R06C01_Red.idat 13677955 IDAT NA 5c22a10c-66de-4495-869b-009f24631542 katmai C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/81a63cde-b0d0-40d8-bd21-4ac99c45f504/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 katmai C3N-03450.RNA-Seq.R2.A C3N-03450 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/d26762d9-9ed0-4411-85a1-8a6ecfa904a0/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ NA d26762d9-9ed0-4411-85a1-8a6ecfa904a0 katmai C3N-03452.miRNA-Seq.T.hg38 C3N-03452 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/44aafc75-b3f5-4fff-b65f-c8119d490480/43f66e46-99a8-446a-ae78-9fdd0d0e5b4d_mirnaseq_gdc_realn.bam 608275622 BAM hg38 44aafc75-b3f5-4fff-b65f-c8119d490480 katmai +C3N-03452.RNA-Seq.genomic.T.hg38 C3N-03452 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/be9c22f9-1c15-46a5-be0f-4925c7e480bf/47c059a7-46d4-4262-840a-0260f6fa0efc.rna_seq.genomic.gdc_realn.bam 8861650534 BAM hg38 be9c22f9-1c15-46a5-be0f-4925c7e480bf katmai C3N-03452.RNA-Seq.R1.A C3N-03452 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/0556e930-1904-4780-bf80-cdfba5c577b7/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ NA 0556e930-1904-4780-bf80-cdfba5c577b7 katmai +C3N-03452.RNA-Seq.R1.T C3N-03452 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bcb5374d-d91f-4617-9a0b-33efb9238a3f/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ NA bcb5374d-d91f-4617-9a0b-33efb9238a3f katmai C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/c582f341-273b-490f-9e51-725a98439835/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ NA c582f341-273b-490f-9e51-725a98439835 katmai +C3N-03452.RNA-Seq.R2.T C3N-03452 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1b82dc44-54ea-4dcb-8e7c-5b0167c478f0/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ NA 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 katmai C3N-03453.miRNA-Seq.T.hg38 C3N-03453 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/934da61a-31c6-4721-b765-fa396d4d6fb9/31f7f397-5252-408c-9d42-f5b47fb792a2_mirnaseq_gdc_realn.bam 251493832 BAM hg38 934da61a-31c6-4721-b765-fa396d4d6fb9 katmai +C3N-03453.RNA-Seq.genomic.T.hg38 C3N-03453 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f0d49129-272e-4fa8-abf7-dd07f11e0c6a/d6165227-d57d-46a6-81d2-c1c81b634c7c.rna_seq.genomic.gdc_realn.bam 7272445834 BAM hg38 f0d49129-272e-4fa8-abf7-dd07f11e0c6a katmai +C3N-03453.RNA-Seq.R1.T C3N-03453 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a3a1d4f8-d8b2-4e47-be49-bfd4d235448f/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ NA a3a1d4f8-d8b2-4e47-be49-bfd4d235448f katmai +C3N-03453.RNA-Seq.R2.T C3N-03453 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d643ac36-a2be-46bd-bcf4-eac66dfe9253/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ NA d643ac36-a2be-46bd-bcf4-eac66dfe9253 katmai C3N-03456.MethArray.Green.T C3N-03456 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4088662d-239a-45c8-87e2-972656a71861/203220070165_R05C01_Grn.idat 13676206 IDAT NA 4088662d-239a-45c8-87e2-972656a71861 katmai C3N-03456.MethArray.Red.T C3N-03456 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d3874dd0-6897-4958-a84f-6ace645aaa99/203220070165_R05C01_Red.idat 13676206 IDAT NA d3874dd0-6897-4958-a84f-6ace645aaa99 katmai C3N-03456.miRNA-Seq.T C3N-03456 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b778c9a0-444f-401f-874d-b7b0a7d19561/190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L007_R1_001.unaln.bam 164485506 BAM NA b778c9a0-444f-401f-874d-b7b0a7d19561 katmai @@ -11449,7 +11563,13 @@ C3N-03473.RNA-Seq.genomic.T.hg38 C3N-03473 GBM RNA-Seq tumor /diskmnt/Projects/c C3N-03473.RNA-Seq.R1.T C3N-03473 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4bd3819d-93da-4567-928b-f5927ac9e1d4/180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ NA 4bd3819d-93da-4567-928b-f5927ac9e1d4 katmai C3N-03473.RNA-Seq.R2.T C3N-03473 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/47023c29-a0d9-44e4-9ee0-c508be560e14/180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ NA 47023c29-a0d9-44e4-9ee0-c508be560e14 katmai C3N-03480.miRNA-Seq.T.hg38 C3N-03480 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/acf6192c-1d46-4746-a7fb-06f192c055ad/0ac9c4aa-8860-43ac-987e-ea5c74700679_mirnaseq_gdc_realn.bam 241747354 BAM hg38 acf6192c-1d46-4746-a7fb-06f192c055ad katmai +C3N-03480.RNA-Seq.genomic.T.hg38 C3N-03480 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/28255bde-fa86-4529-9edb-66439d7753e3/a228c839-3f3f-4e57-9082-818d81fa8ff0.rna_seq.genomic.gdc_realn.bam 5714497173 BAM hg38 28255bde-fa86-4529-9edb-66439d7753e3 katmai +C3N-03480.RNA-Seq.R1.T C3N-03480 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f76e24bf-2452-4f99-8d37-8cbe2327cfbc/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ NA f76e24bf-2452-4f99-8d37-8cbe2327cfbc katmai +C3N-03480.RNA-Seq.R2.T C3N-03480 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4dc1a8c2-6c07-43e4-9901-b5885da43e33/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ NA 4dc1a8c2-6c07-43e4-9901-b5885da43e33 katmai C3N-03484.miRNA-Seq.T.hg38 C3N-03484 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bccef22b-a159-45a2-ab4f-e61e30f1938f/386b1cd0-36e9-4c81-994f-1bf017803701_mirnaseq_gdc_realn.bam 208439388 BAM hg38 bccef22b-a159-45a2-ab4f-e61e30f1938f katmai +C3N-03484.RNA-Seq.genomic.T.hg38 C3N-03484 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b20641d2-793d-4233-b3fb-843015c93997/0c6a7c2c-d793-4320-ac99-59dd56c48027.rna_seq.genomic.gdc_realn.bam 6547337417 BAM hg38 b20641d2-793d-4233-b3fb-843015c93997 katmai +C3N-03484.RNA-Seq.R1.T C3N-03484 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/43c7c7da-6399-4ecb-b5e9-7bd1481fd3af/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ NA 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af katmai +C3N-03484.RNA-Seq.R2.T C3N-03484 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f10504f3-e9a4-4e87-9cda-7b7d225d0b17/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ NA f10504f3-e9a4-4e87-9cda-7b7d225d0b17 katmai C3N-03486.MethArray.Green.T C3N-03486 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/254f5627-ebdb-4f3b-9a1c-36b9da4fbdb4/203219640095_R04C01_Grn.idat 13676216 IDAT NA 254f5627-ebdb-4f3b-9a1c-36b9da4fbdb4 katmai C3N-03486.MethArray.Red.T C3N-03486 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fd276e34-f332-47f0-a45c-acb11a00342c/203219640095_R04C01_Red.idat 13676216 IDAT NA fd276e34-f332-47f0-a45c-acb11a00342c katmai C3N-03486.miRNA-Seq.A C3N-03486 LSCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cbd39aea-3d77-403a-ab2a-b8c3f67424a6/181219_UNC31-K00269_0173_BHYGJJBBXX_TCCCGA_S45_L004_R1_001.unaln.bam 199638617 BAM NA cbd39aea-3d77-403a-ab2a-b8c3f67424a6 katmai @@ -11566,8 +11686,17 @@ C3N-03754.miRNA-Seq.T C3N-03754 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_down C3N-03754.miRNA-Seq.T.hg38 C3N-03754 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/24be9d9e-c424-42b6-b8b0-0d8cf21d75ce/79feb52c-1046-41ef-80f0-7f615c208bac_mirnaseq_gdc_realn.bam 159875379 BAM hg38 24be9d9e-c424-42b6-b8b0-0d8cf21d75ce katmai C3N-03754.RNA-Seq.genomic.T.hg38 C3N-03754 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/859c7264-c004-4ae0-8fd7-ae263ba3a063/aa1e0a00-57be-4e50-ab06-cbe5d02b1efd.rna_seq.genomic.gdc_realn.bam 10073039315 BAM hg38 859c7264-c004-4ae0-8fd7-ae263ba3a063 katmai C3N-03755.miRNA-Seq.T.hg38 C3N-03755 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/34fe4f31-bd59-4ee0-b450-71b440bb2c5f/05fdecb5-b154-4c51-be6a-4ab26d0ef0ac_mirnaseq_gdc_realn.bam 227839068 BAM hg38 34fe4f31-bd59-4ee0-b450-71b440bb2c5f katmai +C3N-03755.RNA-Seq.genomic.T.hg38 C3N-03755 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/019bf36b-ebdf-4331-9dff-1e8db6e7fc7f/b6755e19-dda2-42e0-8a39-9fcb35b50e5b.rna_seq.genomic.gdc_realn.bam 8050677390 BAM hg38 019bf36b-ebdf-4331-9dff-1e8db6e7fc7f katmai +C3N-03755.RNA-Seq.R1.T C3N-03755 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b845241e-88cb-4f0c-9247-637536d1a2af/200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R1_001.fastq.gz 3404251189 FASTQ NA b845241e-88cb-4f0c-9247-637536d1a2af katmai +C3N-03755.RNA-Seq.R2.T C3N-03755 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/76548cbb-338c-4415-83dd-81b50d9ec658/200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ NA 76548cbb-338c-4415-83dd-81b50d9ec658 katmai C3N-03756.miRNA-Seq.T.hg38 C3N-03756 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/33bbf501-79d7-4b50-8df8-8c8ce30d0aca/2e4b0676-8a92-47e5-8e9a-8bef3b29fccd_mirnaseq_gdc_realn.bam 199862148 BAM hg38 33bbf501-79d7-4b50-8df8-8c8ce30d0aca katmai +C3N-03756.RNA-Seq.genomic.T.hg38 C3N-03756 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0fa14dd0-05dc-46b2-8eac-18b6ebb4cc66/f46180a6-2ec1-443b-88b4-a22e621c088f.rna_seq.genomic.gdc_realn.bam 8992693465 BAM hg38 0fa14dd0-05dc-46b2-8eac-18b6ebb4cc66 katmai +C3N-03756.RNA-Seq.R1.T C3N-03756 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ NA e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 katmai +C3N-03756.RNA-Seq.R2.T C3N-03756 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d5a6f477-3888-416d-bbe8-c6110091e40e/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ NA d5a6f477-3888-416d-bbe8-c6110091e40e katmai C3N-03757.miRNA-Seq.T.hg38 C3N-03757 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5eaa3845-65e0-4267-a04f-2514b3166463/cd63d63e-0b6e-4e86-96bc-f5168390c5e4_mirnaseq_gdc_realn.bam 248543913 BAM hg38 5eaa3845-65e0-4267-a04f-2514b3166463 katmai +C3N-03757.RNA-Seq.genomic.T.hg38 C3N-03757 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f81738e9-199a-4b10-86bb-3cca538cb012/3d633190-310d-43e9-b678-cb1910f0de71.rna_seq.genomic.gdc_realn.bam 12105003297 BAM hg38 f81738e9-199a-4b10-86bb-3cca538cb012 katmai +C3N-03757.RNA-Seq.R1.T C3N-03757 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4a00f13f-802b-479a-9c10-208b3158248a/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ NA 4a00f13f-802b-479a-9c10-208b3158248a katmai +C3N-03757.RNA-Seq.R2.T C3N-03757 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/973c3d9c-0686-4288-a83d-725e7d2d0488/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ NA 973c3d9c-0686-4288-a83d-725e7d2d0488 katmai C3N-03764.MethArray.Green.A C3N-03764 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5b71248-df6d-4e9a-b9e4-c3a03b0dad93/203561620095_R07C01_Grn.idat 13676216 IDAT NA f5b71248-df6d-4e9a-b9e4-c3a03b0dad93 katmai C3N-03764.MethArray.Green.T C3N-03764 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/91558040-753b-47dd-92b5-985992e1547d/203561450103_R04C01_Grn.idat 13676216 IDAT NA 91558040-753b-47dd-92b5-985992e1547d katmai C3N-03764.MethArray.Red.A C3N-03764 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/42450cab-48d9-4782-88c1-e3c8277c4a1a/203561620095_R07C01_Red.idat 13676216 IDAT NA 42450cab-48d9-4782-88c1-e3c8277c4a1a katmai @@ -11635,13 +11764,37 @@ C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor /diskmnt/Projects C3N-03785.RNA-Seq.R1.T C3N-03785 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20175374-0734-4641-854c-024ae0497cac/190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R1_001.fastq.gz 4188448557 FASTQ NA 20175374-0734-4641-854c-024ae0497cac katmai C3N-03785.RNA-Seq.R2.T C3N-03785 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d7bc6f70-e6b1-4dec-980e-8aac75250ae6/190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R2_001.fastq.gz 4640347212 FASTQ NA d7bc6f70-e6b1-4dec-980e-8aac75250ae6 katmai C3N-03789.miRNA-Seq.T.hg38 C3N-03789 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/11545c89-0bfc-4d34-adcb-c5ad211f73f2/534a589d-dc25-4c71-85fc-d65334cd27ea_mirnaseq_gdc_realn.bam 249583825 BAM hg38 11545c89-0bfc-4d34-adcb-c5ad211f73f2 katmai +C3N-03789.RNA-Seq.genomic.T.hg38 C3N-03789 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d068a4da-df52-4e8f-9a46-2b355dad6603/d73757f2-11e6-4efa-a6bc-150da1f49b37.rna_seq.genomic.gdc_realn.bam 9898615548 BAM hg38 d068a4da-df52-4e8f-9a46-2b355dad6603 katmai +C3N-03789.RNA-Seq.R1.T C3N-03789 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/de40a9c3-603d-44e2-a76e-9b4a98d3f482/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ NA de40a9c3-603d-44e2-a76e-9b4a98d3f482 katmai +C3N-03789.RNA-Seq.R2.T C3N-03789 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0f25e421-ff9d-41ab-bef9-2503901bdb40/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ NA 0f25e421-ff9d-41ab-bef9-2503901bdb40 katmai C3N-03791.miRNA-Seq.T.hg38 C3N-03791 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fd2bd498-1128-45d6-9d50-b1cd46a7690f/0b734a68-df90-40a5-8f66-54703e80d84c_mirnaseq_gdc_realn.bam 234465379 BAM hg38 fd2bd498-1128-45d6-9d50-b1cd46a7690f katmai +C3N-03791.RNA-Seq.genomic.T.hg38 C3N-03791 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/db31acee-9a1a-4080-b9af-e1fe1102edde/7450c76a-71a3-444b-af29-d2fa83a25518.rna_seq.genomic.gdc_realn.bam 8036950320 BAM hg38 db31acee-9a1a-4080-b9af-e1fe1102edde katmai +C3N-03791.RNA-Seq.R1.T C3N-03791 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/278403a7-7c34-4b9e-97d5-98df7b34b730/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ NA 278403a7-7c34-4b9e-97d5-98df7b34b730 katmai +C3N-03791.RNA-Seq.R2.T C3N-03791 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e0f0a291-d112-4eac-affa-355d24b03424/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ NA e0f0a291-d112-4eac-affa-355d24b03424 katmai C3N-03792.miRNA-Seq.T.hg38 C3N-03792 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/64f2837e-ac5b-4b05-83db-cff8a7e202b3/83e55470-176d-4404-aef6-3d00b8b883b9_mirnaseq_gdc_realn.bam 273353919 BAM hg38 64f2837e-ac5b-4b05-83db-cff8a7e202b3 katmai +C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d47c78f3-9fc1-498d-8274-b1e5a5bfeb8e/ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.genomic.gdc_realn.bam 8629686101 BAM hg38 d47c78f3-9fc1-498d-8274-b1e5a5bfeb8e katmai +C3N-03792.RNA-Seq.R1.T C3N-03792 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/dc36ac00-dcf4-4714-9a22-e1b19e708b23/201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ NA dc36ac00-dcf4-4714-9a22-e1b19e708b23 katmai +C3N-03792.RNA-Seq.R2.T C3N-03792 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a7b201e1-89f6-4622-b6d8-a6271f6ab253/201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ NA a7b201e1-89f6-4622-b6d8-a6271f6ab253 katmai C3N-03796.miRNA-Seq.T.hg38 C3N-03796 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1605bf51-0676-46de-b9e0-3a010f67e1db/405473ee-4448-4b51-a15e-3f161b90d61b_mirnaseq_gdc_realn.bam 243404378 BAM hg38 1605bf51-0676-46de-b9e0-3a010f67e1db katmai +C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e935d295-97b5-4d35-95af-4e173ffba7fb/e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.genomic.gdc_realn.bam 12050085530 BAM hg38 e935d295-97b5-4d35-95af-4e173ffba7fb katmai +C3N-03796.RNA-Seq.R1.T C3N-03796 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b454290d-cc02-4dba-9054-63f52ec8be2c/201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ NA b454290d-cc02-4dba-9054-63f52ec8be2c katmai +C3N-03796.RNA-Seq.R2.T C3N-03796 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a8e13d55-81ac-4ea7-bdf8-4113326e7051/201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ NA a8e13d55-81ac-4ea7-bdf8-4113326e7051 katmai C3N-03797.miRNA-Seq.T.hg38 C3N-03797 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/24ac0596-02b4-4e6f-be96-aca82d40294f/bb234d6a-efd6-4e21-ac76-757818f99f98_mirnaseq_gdc_realn.bam 251406345 BAM hg38 24ac0596-02b4-4e6f-be96-aca82d40294f katmai +C3N-03797.RNA-Seq.genomic.T.hg38 C3N-03797 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8cffef0d-cfd7-4699-a317-b199b3bbb85f/00bc7b27-8e28-4744-b44c-d33d5a7393e2.rna_seq.genomic.gdc_realn.bam 5976167291 BAM hg38 8cffef0d-cfd7-4699-a317-b199b3bbb85f katmai +C3N-03797.RNA-Seq.R1.T C3N-03797 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ed5077a5-706a-4d83-a70f-6ec809c30895/200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R1_001.fastq.gz 2749145746 FASTQ NA ed5077a5-706a-4d83-a70f-6ec809c30895 katmai +C3N-03797.RNA-Seq.R2.T C3N-03797 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4e0d0413-eaf2-4b81-9784-5f28d36b9eb3/200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ NA 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 katmai C3N-03800.miRNA-Seq.T.hg38 C3N-03800 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/62cde963-7d9c-42c2-a937-4aa15ca5eb2c/e4d4f4aa-b06c-4b4c-b6ec-49b28f16ad90_mirnaseq_gdc_realn.bam 249300125 BAM hg38 62cde963-7d9c-42c2-a937-4aa15ca5eb2c katmai +C3N-03800.RNA-Seq.genomic.T.hg38 C3N-03800 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e5b33759-4fc3-4d3a-b2a7-118eafb67d04/eef9627f-d358-4f82-92e9-8ff56dd847b2.rna_seq.genomic.gdc_realn.bam 7194841756 BAM hg38 e5b33759-4fc3-4d3a-b2a7-118eafb67d04 katmai +C3N-03800.RNA-Seq.R1.T C3N-03800 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a6980cb7-4d87-452d-ace8-f2419ef4d665/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ NA a6980cb7-4d87-452d-ace8-f2419ef4d665 katmai +C3N-03800.RNA-Seq.R2.T C3N-03800 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9082c1c1-5abd-4a0e-8f6e-750b5dff16e8/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ NA 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 katmai C3N-03802.miRNA-Seq.T.hg38 C3N-03802 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a46ceaa3-5238-4715-a632-3cb7851204df/39665888-ab29-4c21-9429-f4ad8cca7352_mirnaseq_gdc_realn.bam 301143625 BAM hg38 a46ceaa3-5238-4715-a632-3cb7851204df katmai +C3N-03802.RNA-Seq.genomic.T.hg38 C3N-03802 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0c959ab7-3d98-4f8b-a928-6b1e93b343e2/f34848a1-a8e1-4b4e-8f79-aa8658fe0540.rna_seq.genomic.gdc_realn.bam 8278884007 BAM hg38 0c959ab7-3d98-4f8b-a928-6b1e93b343e2 katmai +C3N-03802.RNA-Seq.R1.T C3N-03802 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/255a8e1c-dc69-4ec7-a76f-1877b51b4f23/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ NA 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 katmai +C3N-03802.RNA-Seq.R2.T C3N-03802 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f86f26d6-0c6b-4120-b71f-4fd632f2ec9c/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ NA f86f26d6-0c6b-4120-b71f-4fd632f2ec9c katmai C3N-03810.miRNA-Seq.T.hg38 C3N-03810 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bdf12979-375d-45de-bb02-d9cc3c93ddb4/cfb72048-a42f-4dab-aa46-f58122a9257a_mirnaseq_gdc_realn.bam 257461966 BAM hg38 bdf12979-375d-45de-bb02-d9cc3c93ddb4 katmai +C3N-03810.RNA-Seq.genomic.T.hg38 C3N-03810 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ba921b15-2e85-43f2-b048-37475e95b54f/95ee1649-488a-4a26-8d2c-cb7561501a12.rna_seq.genomic.gdc_realn.bam 6546815301 BAM hg38 ba921b15-2e85-43f2-b048-37475e95b54f katmai +C3N-03810.RNA-Seq.R1.T C3N-03810 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8fbe432e-3582-4d23-ae52-931b334f2112/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ NA 8fbe432e-3582-4d23-ae52-931b334f2112 katmai +C3N-03810.RNA-Seq.R2.T C3N-03810 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c9bb314d-81a3-4b4a-b3c8-935f7db8d048/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ NA c9bb314d-81a3-4b4a-b3c8-935f7db8d048 katmai C3N-03837.MethArray.Green.T C3N-03837 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4207f9a-79ad-4905-9b36-cbb3d342847f/203273200080_R05C01_Grn.idat 13676206 IDAT NA e4207f9a-79ad-4905-9b36-cbb3d342847f katmai C3N-03837.MethArray.Red.T C3N-03837 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/45533b2d-e36e-48e5-b3e6-c035c8232c51/203273200080_R05C01_Red.idat 13676206 IDAT NA 45533b2d-e36e-48e5-b3e6-c035c8232c51 katmai C3N-03837.miRNA-Seq.A C3N-03837 HNSCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d1a6eed9-4c6b-471f-9c20-77962f62aca3/190228_UNC32-K00270_0151_AHYLY3BBXX_CGATGT_S2_L005_R1_001.unaln.bam 210722534 BAM NA d1a6eed9-4c6b-471f-9c20-77962f62aca3 katmai @@ -11888,12 +12041,33 @@ C3N-03933.RNA-Seq.R1.T C3N-03933 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_dow C3N-03933.RNA-Seq.R2.A C3N-03933 HNSCC RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4ce107ec-5214-4e15-9f89-d8384bfe344b/190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R2_001.fastq.gz 4314337980 FASTQ NA 4ce107ec-5214-4e15-9f89-d8384bfe344b katmai C3N-03933.RNA-Seq.R2.T C3N-03933 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dd399b5f-07c0-49b2-bd2a-40ecb455382c/190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R2_001.fastq.gz 3937845323 FASTQ NA dd399b5f-07c0-49b2-bd2a-40ecb455382c katmai C3N-03935.miRNA-Seq.T.hg38 C3N-03935 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d5b0b9d3-3fc2-46c7-8d17-ed8cd9b6a9b1/d866761c-b106-45a7-a5ca-af2b3bf16c14_mirnaseq_gdc_realn.bam 329521659 BAM hg38 d5b0b9d3-3fc2-46c7-8d17-ed8cd9b6a9b1 katmai +C3N-03935.RNA-Seq.genomic.T.hg38 C3N-03935 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/17317aae-3315-4630-a481-3cc3d0dd9246/4bf98cbc-d1de-40c9-847c-9d473ec60715.rna_seq.genomic.gdc_realn.bam 6998797356 BAM hg38 17317aae-3315-4630-a481-3cc3d0dd9246 katmai +C3N-03935.RNA-Seq.R1.T C3N-03935 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4c91740e-2276-47a4-9b32-c7720ab51594/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ NA 4c91740e-2276-47a4-9b32-c7720ab51594 katmai +C3N-03935.RNA-Seq.R2.T C3N-03935 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/87079c71-53a8-4bf0-925d-e914da7bfd96/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ NA 87079c71-53a8-4bf0-925d-e914da7bfd96 katmai C3N-03939.miRNA-Seq.T.hg38 C3N-03939 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/484956df-24ec-46be-96c9-79a50bc2041d/c7dd3a3c-1814-4218-9edb-45c98aa846a8_mirnaseq_gdc_realn.bam 270906743 BAM hg38 484956df-24ec-46be-96c9-79a50bc2041d katmai +C3N-03939.RNA-Seq.genomic.T.hg38 C3N-03939 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/893bf981-cafd-4379-a69e-9af20603aa28/fa20e0dc-e995-42d9-ab5f-9664b8a545d1.rna_seq.genomic.gdc_realn.bam 6356066293 BAM hg38 893bf981-cafd-4379-a69e-9af20603aa28 katmai +C3N-03939.RNA-Seq.R1.T C3N-03939 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3f4dd232-5cba-4b97-bd63-f47967a5436a/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ NA 3f4dd232-5cba-4b97-bd63-f47967a5436a katmai +C3N-03939.RNA-Seq.R2.T C3N-03939 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/452a0caf-f993-41ba-9f18-1a1180aeb710/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ NA 452a0caf-f993-41ba-9f18-1a1180aeb710 katmai C3N-04092.miRNA-Seq.T.hg38 C3N-04092 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5fc1f505-741a-4c21-977e-a69c068dddf4/b8e7d110-81d4-488f-a6ac-88818105d58c_mirnaseq_gdc_realn.bam 274868455 BAM hg38 5fc1f505-741a-4c21-977e-a69c068dddf4 katmai +C3N-04092.RNA-Seq.genomic.T.hg38 C3N-04092 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/54609a39-70f6-4662-ae7e-dcc1c6037970/ef67c8c2-c41f-4d37-aea9-2e6647143478.rna_seq.genomic.gdc_realn.bam 6338099922 BAM hg38 54609a39-70f6-4662-ae7e-dcc1c6037970 katmai +C3N-04092.RNA-Seq.R1.T C3N-04092 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ NA 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 katmai +C3N-04092.RNA-Seq.R2.T C3N-04092 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/07a3bbdc-69c2-485b-98b2-82ada22cae69/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ NA 07a3bbdc-69c2-485b-98b2-82ada22cae69 katmai C3N-04094.miRNA-Seq.T.hg38 C3N-04094 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ab2a0a68-a90a-454d-86ad-b9bc2aaf99dc/16e7f672-0451-45e7-b0a8-a5a62491ea99_mirnaseq_gdc_realn.bam 165882365 BAM hg38 ab2a0a68-a90a-454d-86ad-b9bc2aaf99dc katmai +C3N-04094.RNA-Seq.genomic.T.hg38 C3N-04094 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/077ecaaf-5bbd-46fa-a12f-3482bb0a6480/7838974d-342d-4684-acce-3afb87900843.rna_seq.genomic.gdc_realn.bam 11461072129 BAM hg38 077ecaaf-5bbd-46fa-a12f-3482bb0a6480 katmai +C3N-04094.RNA-Seq.R1.T C3N-04094 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fa31d2b3-82b2-4734-8c22-ac89b732e8a2/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ NA fa31d2b3-82b2-4734-8c22-ac89b732e8a2 katmai +C3N-04094.RNA-Seq.R2.T C3N-04094 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/254472af-7bd3-4dfb-9014-c2dc90560859/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ NA 254472af-7bd3-4dfb-9014-c2dc90560859 katmai C3N-04097.miRNA-Seq.T.hg38 C3N-04097 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7055fdfe-5233-425f-9ed6-24158dcc0afd/7370bed1-5db7-4796-9763-d586cd61377e_mirnaseq_gdc_realn.bam 291557531 BAM hg38 7055fdfe-5233-425f-9ed6-24158dcc0afd katmai +C3N-04097.RNA-Seq.genomic.T.hg38 C3N-04097 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f4942758-0812-4030-86e4-bc3ab9240bbf/55972dfa-522e-412f-9929-2b381be14a72.rna_seq.genomic.gdc_realn.bam 6663444282 BAM hg38 f4942758-0812-4030-86e4-bc3ab9240bbf katmai +C3N-04097.RNA-Seq.R1.T C3N-04097 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9e14644a-eeec-4d36-a439-d7defafab519/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ NA 9e14644a-eeec-4d36-a439-d7defafab519 katmai +C3N-04097.RNA-Seq.R2.T C3N-04097 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f1b1a394-d643-496b-b856-60147ea00c1a/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ NA f1b1a394-d643-496b-b856-60147ea00c1a katmai C3N-04098.miRNA-Seq.T.hg38 C3N-04098 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/76804205-4e1a-44fc-b05b-c7db2d525060/f8ef438d-5435-410c-981e-3c637c1a913b_mirnaseq_gdc_realn.bam 288457553 BAM hg38 76804205-4e1a-44fc-b05b-c7db2d525060 katmai +C3N-04098.RNA-Seq.genomic.T.hg38 C3N-04098 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f3ccc68e-a92d-49dd-a6ac-7f9a636490da/5ff73cba-906f-4e07-a584-8eea6c8bb0e2.rna_seq.genomic.gdc_realn.bam 5854312850 BAM hg38 f3ccc68e-a92d-49dd-a6ac-7f9a636490da katmai +C3N-04098.RNA-Seq.R1.T C3N-04098 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e4772d8e-0ded-4236-8602-1b1dfe51e8df/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ NA e4772d8e-0ded-4236-8602-1b1dfe51e8df katmai +C3N-04098.RNA-Seq.R2.T C3N-04098 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/129e4b38-443f-4cf9-8e20-f98ccef517c8/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ NA 129e4b38-443f-4cf9-8e20-f98ccef517c8 katmai C3N-04100.miRNA-Seq.T.hg38 C3N-04100 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4332b035-f3ff-425c-97d5-04c51097867c/9cbac332-c8ef-4f04-af5b-d1ef073c17e4_mirnaseq_gdc_realn.bam 196890022 BAM hg38 4332b035-f3ff-425c-97d5-04c51097867c katmai +C3N-04100.RNA-Seq.genomic.T.hg38 C3N-04100 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e228574c-3267-45f4-95a2-cb35f048a799/ef63c4d5-ecac-4b0b-84c4-bbe60711a8d9.rna_seq.genomic.gdc_realn.bam 7196019444 BAM hg38 e228574c-3267-45f4-95a2-cb35f048a799 katmai +C3N-04100.RNA-Seq.R1.T C3N-04100 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d5d4dee6-5523-43c9-902b-c019c3a29533/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ NA d5d4dee6-5523-43c9-902b-c019c3a29533 katmai +C3N-04100.RNA-Seq.R2.T C3N-04100 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/92f769cc-3b94-4805-bef6-3de96959e898/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ NA 92f769cc-3b94-4805-bef6-3de96959e898 katmai C3N-04113.MethArray.Green.T C3N-04113 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/a6c818e8-81f4-426d-bffa-0955e283e20c/204930630109_R07C01_Grn.idat 13677885 IDAT NA a6c818e8-81f4-426d-bffa-0955e283e20c katmai C3N-04113.MethArray.Green.T.RDNA_o25vvXX C3N-04113 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/75e8ad59-7e4e-4212-9e10-cc1650e4d469/205555390176_R05C01_Grn.idat 13677955 IDAT NA 75e8ad59-7e4e-4212-9e10-cc1650e4d469 katmai C3N-04113.MethArray.Red.T C3N-04113 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/df28f441-dc30-48e2-9879-7505d6adc086/204930630109_R07C01_Red.idat 13677885 IDAT NA df28f441-dc30-48e2-9879-7505d6adc086 katmai @@ -12084,6 +12258,9 @@ C3N-04284.miRNA-Seq.T C3N-04284 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_down C3N-04284.miRNA-Seq.T.hg38 C3N-04284 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ce8350c3-ca82-497b-b1f6-13e6d9e90cca/477e974f-bc22-441e-9b64-f15b6e2c8cdb_mirnaseq_gdc_realn.bam 170870153 BAM hg38 ce8350c3-ca82-497b-b1f6-13e6d9e90cca katmai C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/01caf05d-f998-4b97-abff-726a19d42b45/0a4b95b9-5507-4d4b-8f44-5757cdabe1c4.rna_seq.genomic.gdc_realn.bam 7886861222 BAM hg38 01caf05d-f998-4b97-abff-726a19d42b45 katmai C3N-04312.miRNA-Seq.T.hg38 C3N-04312 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f/51030b5e-f536-41d9-acf7-8908bfc76d55_mirnaseq_gdc_realn.bam 307510606 BAM hg38 5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f katmai +C3N-04312.RNA-Seq.genomic.T.hg38 C3N-04312 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7b07bc1e-7ebd-4960-ac94-8b6fb6c213a0/fa1d1462-eb84-45be-aa85-7c6f26715516.rna_seq.genomic.gdc_realn.bam 9520488499 BAM hg38 7b07bc1e-7ebd-4960-ac94-8b6fb6c213a0 katmai +C3N-04312.RNA-Seq.R1.T C3N-04312 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b9ffa766-00b4-43fc-9cdd-d894a2cdce9c/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ NA b9ffa766-00b4-43fc-9cdd-d894a2cdce9c katmai +C3N-04312.RNA-Seq.R2.T C3N-04312 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7db80f50-b30d-44fc-9bc6-e03eb048a892/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ NA 7db80f50-b30d-44fc-9bc6-e03eb048a892 katmai C3N-04382.MethArray.Green.A C3N-04382 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/28023d7c-09c1-4396-9e1d-34c90d43e962/203561620080_R02C01_Grn.idat 13676226 IDAT NA 28023d7c-09c1-4396-9e1d-34c90d43e962 katmai C3N-04382.MethArray.Green.T C3N-04382 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/00bc5a09-9d45-4f23-a793-1b298a009941/203561450102_R04C01_Grn.idat 13676236 IDAT NA 00bc5a09-9d45-4f23-a793-1b298a009941 katmai C3N-04382.MethArray.Red.A C3N-04382 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2791aa60-ea66-4260-bc7b-db5c82124887/203561620080_R02C01_Red.idat 13676226 IDAT NA 2791aa60-ea66-4260-bc7b-db5c82124887 katmai @@ -12107,16 +12284,43 @@ C3N-04611.RNA-Seq.R1.T C3N-04611 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_dow C3N-04611.RNA-Seq.R2.A C3N-04611 HNSCC RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/76f05057-3a1b-4919-af2b-b334855a4e4e/190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R2_001.fastq.gz 3868045676 FASTQ NA 76f05057-3a1b-4919-af2b-b334855a4e4e katmai C3N-04611.RNA-Seq.R2.T C3N-04611 HNSCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/85606e14-df05-44d8-8a65-c208cfb10b9a/190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R2_001.fastq.gz 4420408338 FASTQ NA 85606e14-df05-44d8-8a65-c208cfb10b9a katmai C3N-04683.miRNA-Seq.T.hg38 C3N-04683 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/311a4ebe-7e72-4e55-a502-bd47c7a135a1/16109734-8b9d-4364-9c77-bacca3460cf4_mirnaseq_gdc_realn.bam 246174415 BAM hg38 311a4ebe-7e72-4e55-a502-bd47c7a135a1 katmai +C3N-04683.RNA-Seq.genomic.T.hg38 C3N-04683 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1a7ec92e-ca6b-49f3-a959-6e3505b4f4b2/e51007a0-16e8-482d-8613-f61b190956d4.rna_seq.genomic.gdc_realn.bam 7373172926 BAM hg38 1a7ec92e-ca6b-49f3-a959-6e3505b4f4b2 katmai +C3N-04683.RNA-Seq.R1.T C3N-04683 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4501fe75-7e04-4fc8-9b96-80dc695086b6/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ NA 4501fe75-7e04-4fc8-9b96-80dc695086b6 katmai +C3N-04683.RNA-Seq.R2.T C3N-04683 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e7334afa-2cbe-448d-9768-0bff2678dec7/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ NA e7334afa-2cbe-448d-9768-0bff2678dec7 katmai C3N-04686.miRNA-Seq.T.hg38 C3N-04686 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/549a369e-c652-493b-a59b-a2ed261aa15f/4ea5c927-9285-40e9-b09b-04885b88f969_mirnaseq_gdc_realn.bam 290410092 BAM hg38 549a369e-c652-493b-a59b-a2ed261aa15f katmai +C3N-04686.RNA-Seq.genomic.T.hg38 C3N-04686 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/99375aa8-7f55-4a27-897d-854cf51bafd8/bbff1013-b568-4778-87fd-f10612d2afbb.rna_seq.genomic.gdc_realn.bam 8201751030 BAM hg38 99375aa8-7f55-4a27-897d-854cf51bafd8 katmai +C3N-04686.RNA-Seq.R1.T C3N-04686 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/157280cb-210f-407f-997c-cbd5fbd18578/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ NA 157280cb-210f-407f-997c-cbd5fbd18578 katmai +C3N-04686.RNA-Seq.R2.T C3N-04686 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6d47e078-6b42-4a7e-abcc-5a82b3dfd843/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ NA 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 katmai C3N-04687.miRNA-Seq.T.hg38 C3N-04687 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f420bc48-fe3b-4717-b2fa-79faed28c2ca/7a186112-57f4-4454-8e2b-e1cb78dabdf4_mirnaseq_gdc_realn.bam 228891390 BAM hg38 f420bc48-fe3b-4717-b2fa-79faed28c2ca katmai +C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/16e82122-8071-438c-9845-599931d9b669/967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.genomic.gdc_realn.bam 11863165641 BAM hg38 16e82122-8071-438c-9845-599931d9b669 katmai +C3N-04687.RNA-Seq.R1.T C3N-04687 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5813883a-bd76-4717-b554-85107c414177/201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ NA 5813883a-bd76-4717-b554-85107c414177 katmai +C3N-04687.RNA-Seq.R2.T C3N-04687 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/88fe2168-5fc0-4f42-87f2-19dceb47c4e3/201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ NA 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 katmai C3N-04691.miRNA-Seq.T.hg38 C3N-04691 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4f19e4ce-59e2-4562-a3a7-d871d430abbe/b802112b-e57a-481c-b292-a6560fb62db4_mirnaseq_gdc_realn.bam 306479091 BAM hg38 4f19e4ce-59e2-4562-a3a7-d871d430abbe katmai +C3N-04691.RNA-Seq.genomic.T.hg38 C3N-04691 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b2dd8a2e-26a8-4550-a48b-35a95513eb7f/3681fe8e-06ac-4060-9234-5e6f83141e7a.rna_seq.genomic.gdc_realn.bam 7182569300 BAM hg38 b2dd8a2e-26a8-4550-a48b-35a95513eb7f katmai +C3N-04691.RNA-Seq.R1.T C3N-04691 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8b611a73-3ec3-456e-95fd-6f25ee476c28/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ NA 8b611a73-3ec3-456e-95fd-6f25ee476c28 katmai +C3N-04691.RNA-Seq.R2.T C3N-04691 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0a016bfe-4773-486e-be6e-af9ed353c9b5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ NA 0a016bfe-4773-486e-be6e-af9ed353c9b5 katmai C3N-04693.miRNA-Seq.T.hg38 C3N-04693 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c2efe5e4-452b-4071-a687-3f86307753dd/307ae310-cd8b-4c18-aad1-2953d96267b7_mirnaseq_gdc_realn.bam 245401329 BAM hg38 c2efe5e4-452b-4071-a687-3f86307753dd katmai +C3N-04693.RNA-Seq.genomic.T.hg38 C3N-04693 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6631fd2e-2bd5-4a50-a92e-88d3897c6ca9/d2582994-d682-4d05-97cd-82ef307e6b13.rna_seq.genomic.gdc_realn.bam 11330739789 BAM hg38 6631fd2e-2bd5-4a50-a92e-88d3897c6ca9 katmai +C3N-04693.RNA-Seq.R1.T C3N-04693 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/95e19f64-f558-4704-b020-3cc06287e7f4/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ NA 95e19f64-f558-4704-b020-3cc06287e7f4 katmai +C3N-04693.RNA-Seq.R2.T C3N-04693 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7144248c-c457-48a8-bd20-e742f014d9bd/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ NA 7144248c-c457-48a8-bd20-e742f014d9bd katmai C3N-04695.miRNA-Seq.T.hg38 C3N-04695 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b96ad40b-b6ee-425e-b039-0b7b5f79c219/8ffc0ec3-0cbc-45a3-bf2f-978b97a6cf9a_mirnaseq_gdc_realn.bam 278835217 BAM hg38 b96ad40b-b6ee-425e-b039-0b7b5f79c219 katmai +C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c892103c-2215-46fb-8cb8-469ddcc483ca/d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.genomic.gdc_realn.bam 9685136847 BAM hg38 c892103c-2215-46fb-8cb8-469ddcc483ca katmai +C3N-04695.RNA-Seq.R1.T C3N-04695 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/192aec81-2351-4e27-88b7-36549fbf6d8d/201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ NA 192aec81-2351-4e27-88b7-36549fbf6d8d katmai +C3N-04695.RNA-Seq.R2.T C3N-04695 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/37a18500-3aa6-42ad-99ed-e1c041194c48/201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ NA 37a18500-3aa6-42ad-99ed-e1c041194c48 katmai C3N-05039.MethArray.Green.T C3N-05039 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/0e2b16e4-ac2d-4ed4-a73a-c9a407bba896/205555380179_R08C01_Grn.idat 13677960 IDAT NA 0e2b16e4-ac2d-4ed4-a73a-c9a407bba896 katmai C3N-05039.MethArray.Red.T C3N-05039 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/b1dab8f3-b85c-4582-a2f8-cd872fd00719/205555380179_R08C01_Red.idat 13677960 IDAT NA b1dab8f3-b85c-4582-a2f8-cd872fd00719 katmai C3N-05039.miRNA-Seq.T.hg38 C3N-05039 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/83cb7915-658a-43ea-8a36-9282a80da07a/9b54f050-596d-4330-a614-d4114efbc541_mirnaseq_gdc_realn.bam 368781524 BAM hg38 83cb7915-658a-43ea-8a36-9282a80da07a katmai +C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d89fee5c-6a24-4d3d-9c62-6f144847b5b4/9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.genomic.gdc_realn.bam 8258799612 BAM hg38 d89fee5c-6a24-4d3d-9c62-6f144847b5b4 katmai +C3N-05039.RNA-Seq.R1.T C3N-05039 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6ab25656-a131-45dd-8109-b25ff504557b/201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ NA 6ab25656-a131-45dd-8109-b25ff504557b katmai +C3N-05039.RNA-Seq.R2.T C3N-05039 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/65389fb7-97ce-4735-bc64-6092b9173a2a/201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ NA 65389fb7-97ce-4735-bc64-6092b9173a2a katmai C3N-05114.miRNA-Seq.T.hg38 C3N-05114 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a8655809-53a8-4e3e-8f82-1f31ad01e9b8/36569e13-7688-4fce-8fd0-4d0cedb599b3_mirnaseq_gdc_realn.bam 266581230 BAM hg38 a8655809-53a8-4e3e-8f82-1f31ad01e9b8 katmai +C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/57c00592-8859-417e-8ce8-cfda50845047/a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.genomic.gdc_realn.bam 7575656426 BAM hg38 57c00592-8859-417e-8ce8-cfda50845047 katmai +C3N-05114.RNA-Seq.R1.T C3N-05114 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0a01510e-f773-49bb-b942-ed13ac1e72a2/201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ NA 0a01510e-f773-49bb-b942-ed13ac1e72a2 katmai +C3N-05114.RNA-Seq.R2.T C3N-05114 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/23d53980-2023-4c74-bb48-ff2282011226/201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ NA 23d53980-2023-4c74-bb48-ff2282011226 katmai C3N-05135.miRNA-Seq.T.hg38 C3N-05135 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3280de74-19ac-4d09-b76b-63377904592e/61831f48-b9d2-418c-83e1-abccebef1bc5_mirnaseq_gdc_realn.bam 236078424 BAM hg38 3280de74-19ac-4d09-b76b-63377904592e katmai +C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8bc2cff2-bad5-4f1a-a690-a15cd20bbb98/50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.genomic.gdc_realn.bam 7831052761 BAM hg38 8bc2cff2-bad5-4f1a-a690-a15cd20bbb98 katmai +C3N-05135.RNA-Seq.R1.T C3N-05135 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f923cf94-4f61-4f33-8cab-5328f7853280/201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ NA f923cf94-4f61-4f33-8cab-5328f7853280 katmai +C3N-05135.RNA-Seq.R2.T C3N-05135 GBM RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bba10325-9b48-47e2-8983-b3687f010e06/201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ NA bba10325-9b48-47e2-8983-b3687f010e06 katmai C3N-05991.MethArray.Green.T C3N-05991 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/e1bd1e3c-68ca-4e80-a830-56bced50c141/205555390157_R08C01_Grn.idat 13677955 IDAT NA e1bd1e3c-68ca-4e80-a830-56bced50c141 katmai C3N-05991.MethArray.Red.T C3N-05991 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/32afbfd3-a0a5-4a19-8323-a110da686f9e/205555390157_R08C01_Red.idat 13677955 IDAT NA 32afbfd3-a0a5-4a19-8323-a110da686f9e katmai C3N-05991.miRNA-Seq.T.hg38 C3N-05991 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d802bdcc-83a8-4d67-a3b5-51d07dae66c1/abd9c74f-2f86-4d33-a671-88896aec0509_mirnaseq_gdc_realn.bam 377206395 BAM hg38 d802bdcc-83a8-4d67-a3b5-51d07dae66c1 katmai