diff --git a/BamMap/storage1.BamMap.dat b/BamMap/storage1.BamMap.dat index 3cbfc88..0c4e7f9 100644 --- a/BamMap/storage1.BamMap.dat +++ b/BamMap/storage1.BamMap.dat @@ -7,15 +7,31 @@ 11LU022.WGS.T.hg38 11LU022 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf94c671-5d26-4691-836c-1e89eab4adce/1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 137841436758 BAM hg38 bf94c671-5d26-4691-836c-1e89eab4adce storage1 11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/051bf441-b940-4e4b-95a9-86f8f892090c/b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM hg38 051bf441-b940-4e4b-95a9-86f8f892090c storage1 11LU035.WGS.T.hg38 11LU035 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83b77360-ef94-43ea-9ac2-7229808e2512/e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 113280187604 BAM hg38 83b77360-ef94-43ea-9ac2-7229808e2512 storage1 +C1230738.RNA-Seq.R1.R C1230738 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0573c53-73bc-4841-8fb6-e5ae0bf87740/210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ NA a0573c53-73bc-4841-8fb6-e5ae0bf87740 storage1 +C1230738.RNA-Seq.R1.T C1230738 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcedfbaa-90dd-4081-8704-a1cb34ec9275/210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R1_001.fastq.gz 3446087771 FASTQ NA bcedfbaa-90dd-4081-8704-a1cb34ec9275 storage1 +C1230738.RNA-Seq.R2.R C1230738 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb68c408-9b99-4474-a4aa-8e8282e65874/210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R2_001.fastq.gz 4079189731 FASTQ NA eb68c408-9b99-4474-a4aa-8e8282e65874 storage1 +C1230738.RNA-Seq.R2.T C1230738 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/455058a8-b378-4ffa-9f8f-0726862855e4/210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R2_001.fastq.gz 3752803777 FASTQ NA 455058a8-b378-4ffa-9f8f-0726862855e4 storage1 C1230738.WGS.N C1230738 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9630601-73b3-4447-bcaf-0ef5d48a7afd/7316UP-2837-1105281.WholeGenome.RP-2158.bam 49814298292 BAM hg19 a9630601-73b3-4447-bcaf-0ef5d48a7afd storage1 +C1230738.WGS.R.ADNA_fe862ae6 C1230738 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd3fd775-330c-43c8-bfbc-5e0ab6dff59a/7316UP-3741.WholeGenome.RP-2158.bam 50417576165 BAM hg19 dd3fd775-330c-43c8-bfbc-5e0ab6dff59a storage1 +C1230738.WGS.T.ADNA_eb44394c C1230738 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f35a206c-e451-4218-9c40-07dd239012b8/7316UP-2837.WholeGenome.RP-2158.bam 69746897192 BAM hg19 f35a206c-e451-4218-9c40-07dd239012b8 storage1 C1230738.WGS.T C1230738 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49dc59e8-8e4b-4ee7-8da5-c8741457b41b/7316UP-2837-1105198.WholeGenome.RP-2158.bam 63902215677 BAM hg19 49dc59e8-8e4b-4ee7-8da5-c8741457b41b storage1 C1230738.WXS.N C1230738 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c45e702-2e8c-4706-8e0a-f0c5a02d8883/7316UP-2837-1105281.WholeExome.RP-1303.bam 24752739546 BAM hg19 7c45e702-2e8c-4706-8e0a-f0c5a02d8883 storage1 +C1230738.WXS.R.ADNA_fe862ae6 C1230738 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d9c4ae4-85b5-4f7c-96d9-b0cf9ac46c84/7316UP-3741.WholeExome.RP-1303.bam 28694893121 BAM hg19 1d9c4ae4-85b5-4f7c-96d9-b0cf9ac46c84 storage1 +C1230738.WXS.T.ADNA_eb44394c C1230738 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1e8f2ec-063c-4de6-9ed2-86f00ad6d39e/7316UP-2837.WholeExome.RP-1303.bam 25636693051 BAM hg19 f1e8f2ec-063c-4de6-9ed2-86f00ad6d39e storage1 C1230738.WXS.T C1230738 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dfde80e-ad35-4698-8708-833ed9db67b4/7316UP-2837-1105198.WholeExome.RP-1303.bam 25663974485 BAM hg19 1dfde80e-ad35-4698-8708-833ed9db67b4 storage1 +C1245129.RNA-Seq.R1.T C1245129 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9146c2dd-2d86-4d94-8fc4-b913e7ad8216/210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ NA 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 storage1 +C1245129.RNA-Seq.R2.T C1245129 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f848e37-a739-4737-82e9-8773182905fa/210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4453892311 FASTQ NA 8f848e37-a739-4737-82e9-8773182905fa storage1 C1245129.WGS.N C1245129 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4c0b12c-e914-477c-a18e-ab5053ec2576/7316UP-2923-1105282.WholeGenome.RP-2158.bam 48169949339 BAM hg19 b4c0b12c-e914-477c-a18e-ab5053ec2576 storage1 +C1245129.WGS.R.ADNA_bede5e24 C1245129 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bde92380-6a06-432a-8937-9558526363bd/7316UP-3639.WholeGenome.RP-2158.bam 54503635300 BAM hg19 bde92380-6a06-432a-8937-9558526363bd storage1 +C1245129.WGS.T.ADNA_f4f0a623 C1245129 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ea042b4-5220-487e-90c0-8b5fb62d514f/7316UP-2923.WholeGenome.RP-2158.bam 68310898527 BAM hg19 9ea042b4-5220-487e-90c0-8b5fb62d514f storage1 C1245129.WGS.T C1245129 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff7d7322-8f44-4cca-a899-bc04dbf62e37/7316UP-2923-1105251.WholeGenome.RP-2158.bam 62969913054 BAM hg19 ff7d7322-8f44-4cca-a899-bc04dbf62e37 storage1 C1245129.WXS.N C1245129 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/334eab09-2429-4ae9-9af9-293d49f76501/7316UP-2923-1105282.WholeExome.RP-1303.bam 27679924367 BAM hg19 334eab09-2429-4ae9-9af9-293d49f76501 storage1 C1245129.WXS.R C1245129 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acb1e32e-2c88-4584-b71a-846497512ffd/7316UP-3639-1105256.WholeExome.RP-1303.bam 27204369067 BAM hg19 acb1e32e-2c88-4584-b71a-846497512ffd storage1 C1245129.WXS.T C1245129 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da97bd44-e486-4792-a8ec-76f714fdda25/7316UP-2923-1105251.WholeExome.RP-1303.bam 28736155132 BAM hg19 da97bd44-e486-4792-a8ec-76f714fdda25 storage1 +C204057.RNA-Seq.R1.R.ARNA_4a62de3d C204057 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e05465c-1a40-4992-b207-86b0751b0fed/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ NA 0e05465c-1a40-4992-b207-86b0751b0fed storage1 +C204057.RNA-Seq.R1.T C204057 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37/210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 3528309965 FASTQ NA 64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37 storage1 +C204057.RNA-Seq.R2.R.ARNA_4a62de3d C204057 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68b5d360-095b-4ca6-9658-6d780328b56f/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R2_001.fastq.gz 3967445180 FASTQ NA 68b5d360-095b-4ca6-9658-6d780328b56f storage1 +C204057.RNA-Seq.R2.T C204057 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e892ebf-f748-4b16-b9fb-bad025c61d0b/210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 3876277963 FASTQ NA 8e892ebf-f748-4b16-b9fb-bad025c61d0b storage1 C204057.WGS.N C204057 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fcea472-64ed-4e2a-ad0b-832dd6fba527/7316UP-302-1105284.WholeGenome.RP-2158.bam 51382775991 BAM hg19 4fcea472-64ed-4e2a-ad0b-832dd6fba527 storage1 C204057.WGS.R.ADNA_0970ef0d C204057 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79cfad83-3cab-4f9a-9d9d-df2bc48e331f/7316UP-662-1105237.WholeGenome.RP-2158.bam 50399269668 BAM hg19 79cfad83-3cab-4f9a-9d9d-df2bc48e331f storage1 C204057.WGS.T C204057 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4819119-dcc7-45f5-8c8e-70624744ed84/7316UP-302-1105230.WholeGenome.RP-2158.bam 49458426510 BAM hg19 d4819119-dcc7-45f5-8c8e-70624744ed84 storage1 @@ -23,110 +39,241 @@ C204057.WXS.N C204057 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/P C204057.WXS.R.ADNA_0970ef0d C204057 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba464092-6b3e-4c16-9ae5-b57c4cd4b9db/7316UP-662-1105237.WholeExome.RP-1303.bam 22253872234 BAM hg19 ba464092-6b3e-4c16-9ae5-b57c4cd4b9db storage1 C204057.WXS.R C204057 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79856ba8-1268-4a1f-b2c6-728e2191df5f/7316UP-662-1105227.WholeExome.RP-1303.bam 27949418001 BAM hg19 79856ba8-1268-4a1f-b2c6-728e2191df5f storage1 C204057.WXS.T C204057 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c42d58e9-87d7-434d-86d9-a8365d4d6f91/7316UP-302-1105230.WholeExome.RP-1303.bam 21477886080 BAM hg19 c42d58e9-87d7-434d-86d9-a8365d4d6f91 storage1 +C207624.RNA-Seq.R1.R C207624 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f6a1a61-d46d-4ec0-9635-1501d10f1e92/210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ NA 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 storage1 +C207624.RNA-Seq.R1.T C207624 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/851d1582-47e3-4694-a4ce-54b4f0ca7865/210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 4159870756 FASTQ NA 851d1582-47e3-4694-a4ce-54b4f0ca7865 storage1 +C207624.RNA-Seq.R2.R C207624 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b27d4e4-a94c-47e7-92d3-f317938b113c/210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R2_001.fastq.gz 4104689026 FASTQ NA 2b27d4e4-a94c-47e7-92d3-f317938b113c storage1 +C207624.RNA-Seq.R2.T C207624 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3e4c767-7287-4451-9f1c-8b00cd2f8dd1/210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 4566212973 FASTQ NA e3e4c767-7287-4451-9f1c-8b00cd2f8dd1 storage1 C207624.WGS.N C207624 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d553f09-86f8-4815-8cea-4173bcf82b4d/7316UP-603-1105207.WholeGenome.RP-2158.bam 48365906283 BAM hg19 5d553f09-86f8-4815-8cea-4173bcf82b4d storage1 +C207624.WGS.R.ADNA_39bda097 C207624 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/daec3268-ea08-44c8-856f-f42bff316c6b/7316UP-961.WholeGenome.RP-2158.bam 48539159794 BAM hg19 daec3268-ea08-44c8-856f-f42bff316c6b storage1 C207624.WGS.R C207624 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86a56d79-40ac-47fe-8c62-7f854fa6fc68/7316UP-961-1105228.WholeGenome.RP-2158.bam 51892018820 BAM hg19 86a56d79-40ac-47fe-8c62-7f854fa6fc68 storage1 C207624.WXS.N C207624 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5130800-4b65-43c8-a053-2b6e914c590b/7316UP-603-1105207.WholeExome.RP-1303.bam 22981380825 BAM hg19 f5130800-4b65-43c8-a053-2b6e914c590b storage1 +C207624.WXS.R.ADNA_39bda097 C207624 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82200a05-7175-45ac-b33a-023baec9c206/7316UP-961.WholeExome.RP-1303.bam 31458355354 BAM hg19 82200a05-7175-45ac-b33a-023baec9c206 storage1 C207624.WXS.R C207624 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8845f830-2f50-42de-94fb-2f0a30ab221e/7316UP-961-1105228.WholeExome.RP-1303.bam 26058311240 BAM hg19 8845f830-2f50-42de-94fb-2f0a30ab221e storage1 +C207624.WXS.T.ADNA_8ab52100 C207624 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21f27e5a-f142-436a-b61f-acd923395bde/7316UP-603.WholeExome.RP-1303.bam 23500383490 BAM hg19 21f27e5a-f142-436a-b61f-acd923395bde storage1 C207624.WXS.T C207624 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22146368-cc6c-4e49-9e71-1447474fd49a/7316UP-603-1105236.WholeExome.RP-1303.bam 21605528792 BAM hg19 22146368-cc6c-4e49-9e71-1447474fd49a storage1 +C208854.RNA-Seq.R1.T.ARNA_af68ac6d C208854 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182139b3-ba15-4e62-b4c8-572f6aa6937c/210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ NA 182139b3-ba15-4e62-b4c8-572f6aa6937c storage1 +C208854.RNA-Seq.R2.T.ARNA_af68ac6d C208854 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/977243c2-78c9-4409-ba05-1a11d89b52d6/210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R2_001.fastq.gz 3900126651 FASTQ NA 977243c2-78c9-4409-ba05-1a11d89b52d6 storage1 C208854.WGS.N C208854 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72887f40-c864-4a38-943f-6bc9a23839c4/7316UP-613-1105214.WholeGenome.RP-2158.bam 50706461361 BAM hg19 72887f40-c864-4a38-943f-6bc9a23839c4 storage1 +C208854.WGS.R.ADNA_2e7d19e4 C208854 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78df3313-e73b-4af5-9f48-b6355a6a92d9/7316UP-979.WholeGenome.RP-2158.bam 55074581506 BAM hg19 78df3313-e73b-4af5-9f48-b6355a6a92d9 storage1 C208854.WGS.R C208854 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bcc6a08-0ddb-4227-b24a-f7d23929dd3f/7316UP-979-1105201.WholeGenome.RP-2158.bam 48370888424 BAM hg19 8bcc6a08-0ddb-4227-b24a-f7d23929dd3f storage1 C208854.WGS.T.ADNA_15b44502 C208854 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8567ce1f-6929-4a83-b435-515b66d20482/7316UP-613-1105231.WholeGenome.RP-2158.bam 53280267937 BAM hg19 8567ce1f-6929-4a83-b435-515b66d20482 storage1 +C208854.WGS.T.ADNA_93ae1041 C208854 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27997ad0-1509-45b0-b324-54b37ae66cde/7316UP-613.WholeGenome.RP-2158.bam 51528547167 BAM hg19 27997ad0-1509-45b0-b324-54b37ae66cde storage1 C208854.WGS.T C208854 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbecca03-1af4-4d30-8a2c-57d07c87feb4/7316UP-613-1105226.WholeGenome.RP-2158.bam 46609557127 BAM hg19 fbecca03-1af4-4d30-8a2c-57d07c87feb4 storage1 C208854.WXS.N C208854 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/754d5b7a-f637-46e2-a5e7-e58d62a1b43e/7316UP-613-1105214.WholeExome.RP-1303.bam 26660154490 BAM hg19 754d5b7a-f637-46e2-a5e7-e58d62a1b43e storage1 +C208854.WXS.R.ADNA_2e7d19e4 C208854 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa0cc5f9-9b08-4f3a-b55c-1db2b68f82db/7316UP-979.WholeExome.RP-1303.bam 31361921312 BAM hg19 aa0cc5f9-9b08-4f3a-b55c-1db2b68f82db storage1 C208854.WXS.R C208854 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96bb342a-acb5-4474-9c48-b3e0274aec8c/7316UP-979-1105201.WholeExome.RP-1303.bam 26993568783 BAM hg19 96bb342a-acb5-4474-9c48-b3e0274aec8c storage1 C208854.WXS.T.ADNA_15b44502 C208854 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/590d290b-2003-4d87-b61f-4b6ad5d5b241/7316UP-613-1105231.WholeExome.RP-1303.bam 23980456638 BAM hg19 590d290b-2003-4d87-b61f-4b6ad5d5b241 storage1 +C208854.WXS.T.ADNA_93ae1041 C208854 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/192f3f34-7cb3-489a-a136-46c1257a12d5/7316UP-613.WholeExome.RP-1303.bam 21743058805 BAM hg19 192f3f34-7cb3-489a-a136-46c1257a12d5 storage1 C208854.WXS.T C208854 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b0a87eb-969e-45f3-bdda-a2cdf407801b/7316UP-613-1105226.WholeExome.RP-1303.bam 21215977915 BAM hg19 3b0a87eb-969e-45f3-bdda-a2cdf407801b storage1 +C217710.RNA-Seq.R1.T C217710 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b6817fd-a951-4eb0-bdac-687b93cf4b88/210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ NA 4b6817fd-a951-4eb0-bdac-687b93cf4b88 storage1 +C217710.RNA-Seq.R2.T C217710 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4650c90e-4e22-48a5-942f-48a9cd2b854d/210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R2_001.fastq.gz 3908136926 FASTQ NA 4650c90e-4e22-48a5-942f-48a9cd2b854d storage1 C217710.WXS.N C217710 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dd64fa5-6f9b-4fd5-90d7-d035a8671553/7316UP-1534-1105276.WholeExome.RP-1303.bam 28868330979 BAM hg19 4dd64fa5-6f9b-4fd5-90d7-d035a8671553 storage1 +C217710.WXS.T.ADNA_e91fb26d C217710 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/870d14bf-8aaf-494a-81fe-947dfa11787d/7316UP-19.WholeExome.RP-1303.bam 43873823632 BAM hg19 870d14bf-8aaf-494a-81fe-947dfa11787d storage1 C217710.WXS.T C217710 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87b51d25-9339-49ab-920f-ab8cecd367e5/7316UP-19-1105245.WholeExome.RP-1303.bam 22589791817 BAM hg19 87b51d25-9339-49ab-920f-ab8cecd367e5 storage1 +C219555.RNA-Seq.R1.R C219555 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddde0a66-c5c5-4aa0-8021-f4c5039e1adf/210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ NA ddde0a66-c5c5-4aa0-8021-f4c5039e1adf storage1 +C219555.RNA-Seq.R2.R C219555 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1871abee-0aa8-4766-b001-d9c3b0c8ff27/210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R2_001.fastq.gz 5060489472 FASTQ NA 1871abee-0aa8-4766-b001-d9c3b0c8ff27 storage1 C219555.WGS.N C219555 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ab71475-b793-47d1-b19b-ed65b1ddd041/7316UP-334-1105285.WholeGenome.RP-2158.bam 68621543980 BAM hg19 8ab71475-b793-47d1-b19b-ed65b1ddd041 storage1 +C219555.WGS.R.ADNA_3937258b C219555 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/882cde8a-9ed0-4fcf-84c5-4e5717afd1a7/7316UP-334.WholeGenome.RP-2158.bam 58828061146 BAM hg19 882cde8a-9ed0-4fcf-84c5-4e5717afd1a7 storage1 C219555.WGS.R C219555 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f0e725e-7d31-48ac-8a04-c1526e8edeac/7316UP-334-1105248.WholeGenome.RP-2158.bam 71429152493 BAM hg19 8f0e725e-7d31-48ac-8a04-c1526e8edeac storage1 C219555.WGS.T C219555 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/919b5f49-39de-41bb-abd9-6c04952e500d/7316UP-35-1105259.WholeGenome.RP-2158.bam 51612850770 BAM hg19 919b5f49-39de-41bb-abd9-6c04952e500d storage1 C219555.WXS.N C219555 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a05ce773-9b47-43c5-a3b7-95f94c23e6a3/7316UP-334-1105285.WholeExome.RP-1303.bam 32358444473 BAM hg19 a05ce773-9b47-43c5-a3b7-95f94c23e6a3 storage1 +C219555.WXS.R.ADNA_3937258b C219555 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8672a141-dd74-4e0e-ab12-6ae1ea12d83a/7316UP-334.WholeExome.RP-1303.bam 30187741761 BAM hg19 8672a141-dd74-4e0e-ab12-6ae1ea12d83a storage1 C219555.WXS.R C219555 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fbb52ea-e534-4842-a4e4-b732b66a7606/7316UP-334-1105248.WholeExome.RP-1303.bam 25559525369 BAM hg19 7fbb52ea-e534-4842-a4e4-b732b66a7606 storage1 C219555.WXS.T C219555 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/869a1730-a19a-4fc9-98e7-077f14452b5b/7316UP-35-1105259.WholeExome.RP-1303.bam 23960204308 BAM hg19 869a1730-a19a-4fc9-98e7-077f14452b5b storage1 +C223491.RNA-Seq.R1.R C223491 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c436956-9492-4126-8ed6-160d0909e49e/210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ NA 1c436956-9492-4126-8ed6-160d0909e49e storage1 +C223491.RNA-Seq.R2.R C223491 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a46bf346-0896-46e7-a3c2-ca63e1e137a0/210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R2_001.fastq.gz 4283501940 FASTQ NA a46bf346-0896-46e7-a3c2-ca63e1e137a0 storage1 +C223491.WGS.R C223491 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fc1bd1b-2147-44ed-91d9-cf53b966f700/7316UP-483-1105191.WholeGenome.RP-2158.bam 52692734505 BAM hg19 7fc1bd1b-2147-44ed-91d9-cf53b966f700 storage1 C223491.WXS.N C223491 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/367f70e0-fa2a-4680-bc61-984611e74928/7316UP-483-1105289.WholeExome.RP-1303.bam 20512771626 BAM hg19 367f70e0-fa2a-4680-bc61-984611e74928 storage1 C223491.WXS.R C223491 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd8663d4-c762-4db2-b8a0-031382dc3666/7316UP-483-1105191.WholeExome.RP-1303.bam 15164145344 BAM hg19 fd8663d4-c762-4db2-b8a0-031382dc3666 storage1 +C224106.RNA-Seq.R1.R C224106 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e/210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ NA c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e storage1 +C224106.RNA-Seq.R1.T C224106 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/286d824a-e222-4b66-a50f-83ba2dfb89f4/210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R1_001.fastq.gz 4345500965 FASTQ NA 286d824a-e222-4b66-a50f-83ba2dfb89f4 storage1 +C224106.RNA-Seq.R2.R C224106 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dddfa45-9731-416b-b47f-be884511bc5b/210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R2_001.fastq.gz 5140415733 FASTQ NA 6dddfa45-9731-416b-b47f-be884511bc5b storage1 +C224106.RNA-Seq.R2.T C224106 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f9ffd59-cfe7-4040-9d6a-68c01075fe7a/210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R2_001.fastq.gz 4825520697 FASTQ NA 1f9ffd59-cfe7-4040-9d6a-68c01075fe7a storage1 C224106.WGS.N C224106 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e16365a8-367a-4945-a052-9125915293c1/7316UP-287-1105215.WholeGenome.RP-2158.bam 60059311186 BAM hg19 e16365a8-367a-4945-a052-9125915293c1 storage1 +C224106.WGS.R.ADNA_b88a1276 C224106 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bff5850e-413d-4144-9d2a-d86b489b09d5/7316UP-895.WholeGenome.RP-2158.bam 56580658686 BAM hg19 bff5850e-413d-4144-9d2a-d86b489b09d5 storage1 C224106.WGS.R C224106 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca7f9da0-0679-4be0-933f-f117d49d5089/7316UP-895-1105233.WholeGenome.RP-2158.bam 65179748190 BAM hg19 ca7f9da0-0679-4be0-933f-f117d49d5089 storage1 +C224106.WGS.T.ADNA_4208c7cd C224106 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14a6ce1c-24ce-4888-bbac-7115538ed5fa/7316UP-287.WholeGenome.RP-2158.bam 57941003136 BAM hg19 14a6ce1c-24ce-4888-bbac-7115538ed5fa storage1 C224106.WGS.T C224106 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa03d5a2-d2cc-4688-bf42-61bec824f21c/7316UP-287-1105192.WholeGenome.RP-2158.bam 49517781076 BAM hg19 fa03d5a2-d2cc-4688-bf42-61bec824f21c storage1 C224106.WXS.N C224106 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33ee6834-8406-45cc-ac7c-2f50544151bc/7316UP-287-1105215.WholeExome.RP-1303.bam 28440047682 BAM hg19 33ee6834-8406-45cc-ac7c-2f50544151bc storage1 +C224106.WXS.R.ADNA_b88a1276 C224106 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fad3c698-2343-44c6-964a-bc3ef345becc/7316UP-895.WholeExome.RP-1303.bam 31935073467 BAM hg19 fad3c698-2343-44c6-964a-bc3ef345becc storage1 C224106.WXS.R C224106 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/597f884b-d907-4300-8505-658bee55f16f/7316UP-895-1105233.WholeExome.RP-1303.bam 20933872946 BAM hg19 597f884b-d907-4300-8505-658bee55f16f storage1 C224106.WXS.T C224106 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bf37e1a-b64b-422e-9a8e-615a7be715d1/7316UP-287-1105192.WholeExome.RP-1303.bam 19953957842 BAM hg19 3bf37e1a-b64b-422e-9a8e-615a7be715d1 storage1 +C224967.RNA-Seq.R1.R C224967 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ NA 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c storage1 +C224967.RNA-Seq.R1.T C224967 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10469910-29ac-4d88-bc8c-42a9bd4cedf1/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R1_001.fastq.gz 3216445001 FASTQ NA 10469910-29ac-4d88-bc8c-42a9bd4cedf1 storage1 +C224967.RNA-Seq.R2.R C224967 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f544bc29-8e0c-4054-b284-10d737bbf7fa/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4177127662 FASTQ NA f544bc29-8e0c-4054-b284-10d737bbf7fa storage1 +C224967.RNA-Seq.R2.T C224967 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e408bab8-2f30-42ba-9eeb-cc5c74ccfa0c/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R2_001.fastq.gz 3726614863 FASTQ NA e408bab8-2f30-42ba-9eeb-cc5c74ccfa0c storage1 +C224967.WGS.R C224967 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44bc125a-5a87-4639-be3a-23e0d55a33cd/7316UP-1273-1105249.WholeGenome.RP-2158.bam 45552404417 BAM hg19 44bc125a-5a87-4639-be3a-23e0d55a33cd storage1 C224967.WXS.N C224967 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d3f989c-48b1-449b-9552-e9f9c47fd3be/7316UP-743-1105291.WholeExome.RP-1303.bam 26575645784 BAM hg19 9d3f989c-48b1-449b-9552-e9f9c47fd3be storage1 C224967.WXS.R C224967 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/399d85bf-b1d9-4b95-bef3-dc2eea0211c5/7316UP-1273-1105249.WholeExome.RP-1303.bam 21705660534 BAM hg19 399d85bf-b1d9-4b95-bef3-dc2eea0211c5 storage1 C224967.WXS.T C224967 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4099c82e-80c2-44c2-935b-44c9ded7faae/7316UP-743-1105199.WholeExome.RP-1303.bam 25027597697 BAM hg19 4099c82e-80c2-44c2-935b-44c9ded7faae storage1 +C229764.RNA-Seq.R1.R C229764 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c530183b-3935-4d0a-a887-aa028b77f774/210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ NA c530183b-3935-4d0a-a887-aa028b77f774 storage1 +C229764.RNA-Seq.R1.T C229764 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/32c3d5c1-3381-4ec0-b60d-414d6275cbf0/210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R1_001.fastq.gz 4111525485 FASTQ NA 32c3d5c1-3381-4ec0-b60d-414d6275cbf0 storage1 +C229764.RNA-Seq.R2.R C229764 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5fbc2da-be05-466a-9433-309fcd49c80e/210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R2_001.fastq.gz 3465575112 FASTQ NA d5fbc2da-be05-466a-9433-309fcd49c80e storage1 +C229764.RNA-Seq.R2.T C229764 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fda85eb9-8e12-427b-87f4-72c840b59a49/210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R2_001.fastq.gz 4429273944 FASTQ NA fda85eb9-8e12-427b-87f4-72c840b59a49 storage1 C229764.WGS.N C229764 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9ba5b0f-051d-4473-a57f-ce4c49cfd25e/7316UP-1359-1105275.WholeGenome.RP-2158.bam 53215888402 BAM hg19 b9ba5b0f-051d-4473-a57f-ce4c49cfd25e storage1 +C229764.WGS.R.ADNA_48c7f5e2 C229764 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fa375f8-bd23-40c7-98b1-7f120b10f23c/7316UP-2110.WholeGenome.RP-2158.bam 48573711632 BAM hg19 8fa375f8-bd23-40c7-98b1-7f120b10f23c storage1 C229764.WGS.R C229764 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/469debd9-3972-41fa-b086-a3f552d60a0a/7316UP-2110-1105239.WholeGenome.RP-2158.bam 69328226067 BAM hg19 469debd9-3972-41fa-b086-a3f552d60a0a storage1 C229764.WGS.T C229764 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d268b30-5092-4aa4-a709-49ceb721bf33/7316UP-109-1105242.WholeGenome.RP-2158.bam 50355188086 BAM hg19 4d268b30-5092-4aa4-a709-49ceb721bf33 storage1 C229764.WXS.N C229764 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba1c0111-e1d0-412a-b58a-ba69241486f7/7316UP-1359-1105275.WholeExome.RP-1303.bam 26629160944 BAM hg19 ba1c0111-e1d0-412a-b58a-ba69241486f7 storage1 +C229764.WXS.R.ADNA_48c7f5e2 C229764 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/efe58f46-f317-4800-8c7c-bf88eae7ee03/7316UP-2110.WholeExome.RP-1303.bam 24570787243 BAM hg19 efe58f46-f317-4800-8c7c-bf88eae7ee03 storage1 C229764.WXS.R C229764 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9443852b-2959-4d43-8e1f-4e88b44427bd/7316UP-2110-1105239.WholeExome.RP-1303.bam 32693049354 BAM hg19 9443852b-2959-4d43-8e1f-4e88b44427bd storage1 C229764.WXS.T C229764 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0483328a-3997-42e0-b9a3-b05d5c0b3caa/7316UP-109-1105242.WholeExome.RP-1303.bam 29536235729 BAM hg19 0483328a-3997-42e0-b9a3-b05d5c0b3caa storage1 +C231855.RNA-Seq.R1.R C231855 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b018459-1fb0-458c-8d4b-40d6ace7089e/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ NA 5b018459-1fb0-458c-8d4b-40d6ace7089e storage1 +C231855.RNA-Seq.R1.T C231855 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a569c62-2dfe-4109-803d-dab5026bfec2/210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R1_001.fastq.gz 4752824534 FASTQ NA 6a569c62-2dfe-4109-803d-dab5026bfec2 storage1 +C231855.RNA-Seq.R2.R C231855 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d90d560-17cb-4038-a922-8e5f8d738b82/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R2_001.fastq.gz 3882186982 FASTQ NA 9d90d560-17cb-4038-a922-8e5f8d738b82 storage1 +C231855.RNA-Seq.R2.T C231855 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e487d435-f110-46da-9ed6-58814f3d33c4/210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R2_001.fastq.gz 5069843304 FASTQ NA e487d435-f110-46da-9ed6-58814f3d33c4 storage1 +C231855.WGS.R C231855 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3f53b40-80ff-4eb2-bbba-451850dcd22b/7316UP-421-1105260.WholeGenome.RP-2158.bam 71075559854 BAM hg19 d3f53b40-80ff-4eb2-bbba-451850dcd22b storage1 C231855.WXS.N C231855 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5f3e504-6c0f-4d0a-87a1-3d084a2f2734/7316UP-421-1105288.WholeExome.RP-1303.bam 20989442407 BAM hg19 a5f3e504-6c0f-4d0a-87a1-3d084a2f2734 storage1 C231855.WXS.R C231855 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf798c5b-546f-48b6-ac81-c41d4bf465a0/7316UP-421-1105260.WholeExome.RP-1303.bam 27632790176 BAM hg19 cf798c5b-546f-48b6-ac81-c41d4bf465a0 storage1 +C231855.WXS.T.ADNA_40a9c1b9 C231855 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11d145b2-db2c-459a-aceb-db63d81a4a5e/7316UP-160.WholeExome.RP-1303.bam 22236292610 BAM hg19 11d145b2-db2c-459a-aceb-db63d81a4a5e storage1 C231855.WXS.T C231855 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/379396e7-9602-4738-a39c-05ba14b6b2d8/7316UP-160-1105247.WholeExome.RP-1303.bam 23334674687 BAM hg19 379396e7-9602-4738-a39c-05ba14b6b2d8 storage1 +C234192.RNA-Seq.R1.R.ARNA_35bb8e11 C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d500c68-fbb2-4d68-b501-7cca903b17cf/210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ NA 7d500c68-fbb2-4d68-b501-7cca903b17cf storage1 +C234192.RNA-Seq.R1.R C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c50ba18b-ea56-4579-a48e-bc82936d96c8/210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R1_001.fastq.gz 3736027921 FASTQ NA c50ba18b-ea56-4579-a48e-bc82936d96c8 storage1 +C234192.RNA-Seq.R1.T C234192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/928d940f-3a8a-43aa-894f-792e0d1d5468/210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 3615865895 FASTQ NA 928d940f-3a8a-43aa-894f-792e0d1d5468 storage1 +C234192.RNA-Seq.R2.R.ARNA_35bb8e11 C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6df26d5c-8487-48eb-aa55-66cb6c2b7da0/210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 3631457607 FASTQ NA 6df26d5c-8487-48eb-aa55-66cb6c2b7da0 storage1 +C234192.RNA-Seq.R2.R C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1e78f00-8882-40ae-aba4-7ccfd12a4996/210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R2_001.fastq.gz 4022993051 FASTQ NA e1e78f00-8882-40ae-aba4-7ccfd12a4996 storage1 +C234192.RNA-Seq.R2.T C234192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f419b308-3b44-43cd-8515-43e351c9b2a9/210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 3963289098 FASTQ NA f419b308-3b44-43cd-8515-43e351c9b2a9 storage1 +C234192.WGS.R.ADNA_27ea3fbd C234192 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa9a65b4-2314-476e-900f-53f5982d3ae4/7316UP-1206-1105262.WholeGenome.RP-2158.bam 76244971420 BAM hg19 aa9a65b4-2314-476e-900f-53f5982d3ae4 storage1 +C234192.WGS.R.ADNA_34cd9d6c C234192 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf5bb143-0b74-4d0d-a847-0eb11c1ca7a1/7316UP-386.WholeGenome.RP-2158.bam 47559885675 BAM hg19 cf5bb143-0b74-4d0d-a847-0eb11c1ca7a1 storage1 +C234192.WGS.T.ADNA_a92ddca1 C234192 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b1b261c-695e-4a48-a3ad-9d7ec0a8f963/7316UP-181.WholeGenome.RP-2158.bam 56435788273 BAM hg19 9b1b261c-695e-4a48-a3ad-9d7ec0a8f963 storage1 C234192.WXS.N C234192 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7aa4be1-0506-4b92-ab15-2c6aa8e84e10/7316UP-386-1105286.WholeExome.RP-1303.bam 24199574526 BAM hg19 f7aa4be1-0506-4b92-ab15-2c6aa8e84e10 storage1 C234192.WXS.R.ADNA_27ea3fbd C234192 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8486ea12-0703-402e-98fe-20dc5fe589ae/7316UP-1206-1105262.WholeExome.RP-1303.bam 31598002776 BAM hg19 8486ea12-0703-402e-98fe-20dc5fe589ae storage1 +C234192.WXS.R.ADNA_34cd9d6c C234192 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/443f69b6-ca13-48ca-934b-a1a8e5b89703/7316UP-386.WholeExome.RP-1303.bam 22730648817 BAM hg19 443f69b6-ca13-48ca-934b-a1a8e5b89703 storage1 C234192.WXS.R C234192 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7da8daf1-63dc-454c-beae-7c7ddd6a8500/7316UP-386-1105200.WholeExome.RP-1303.bam 20806055854 BAM hg19 7da8daf1-63dc-454c-beae-7c7ddd6a8500 storage1 C234192.WXS.T C234192 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6c516d7-ef12-420e-8bf5-bde06419732f/7316UP-181-1105194.WholeExome.RP-1303.bam 25971653894 BAM hg19 b6c516d7-ef12-420e-8bf5-bde06419732f storage1 +C2415597.RNA-Seq.R1.T C2415597 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65a4c75a-7f0b-440c-92db-a907010614d1/210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ NA 65a4c75a-7f0b-440c-92db-a907010614d1 storage1 +C2415597.RNA-Seq.R2.T C2415597 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb7aa747-60b6-4342-aaa4-f076f360b67d/210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R2_001.fastq.gz 4342338020 FASTQ NA bb7aa747-60b6-4342-aaa4-f076f360b67d storage1 C2415597.WGS.N C2415597 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0624d075-1b65-4bab-b6f2-1c9e0a21b6b4/7316UP-3213-1105205.WholeGenome.RP-2158.bam 50217161109 BAM hg19 0624d075-1b65-4bab-b6f2-1c9e0a21b6b4 storage1 +C2415597.WGS.R.ADNA_9de3473e C2415597 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5653b18d-31d5-42b5-95f8-94f92d8a9534/7316UP-3301.WholeGenome.RP-2158.bam 40445705826 BAM hg19 5653b18d-31d5-42b5-95f8-94f92d8a9534 storage1 C2415597.WGS.R C2415597 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e18c60c3-d0db-4475-ae0d-4c9908273151/7316UP-3301-1105203.WholeGenome.RP-2158.bam 55818050597 BAM hg19 e18c60c3-d0db-4475-ae0d-4c9908273151 storage1 +C2415597.WGS.T.ADNA_6b347d64 C2415597 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d9c3282-901f-4e5d-b88d-83dcb8420cf5/7316UP-3213.WholeGenome.RP-2158.bam 46717989960 BAM hg19 6d9c3282-901f-4e5d-b88d-83dcb8420cf5 storage1 C2415597.WXS.N C2415597 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00118ebe-547b-43c0-b0ef-8fd023ad31cd/7316UP-3213-1105205.WholeExome.RP-1303.bam 26839308775 BAM hg19 00118ebe-547b-43c0-b0ef-8fd023ad31cd storage1 +C2415597.WXS.R.ADNA_9de3473e C2415597 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f020ea7e-b765-4680-bb04-a5d01cbb7445/7316UP-3301.WholeExome.RP-1303.bam 24074428846 BAM hg19 f020ea7e-b765-4680-bb04-a5d01cbb7445 storage1 C2415597.WXS.R C2415597 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf176280-c535-4b55-b936-21e7fedcb5de/7316UP-3301-1105203.WholeExome.RP-1303.bam 24495516950 BAM hg19 bf176280-c535-4b55-b936-21e7fedcb5de storage1 C2415597.WXS.T C2415597 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0abd93c6-12d9-44b5-8d34-77397cbce77f/7316UP-3213-1105267.WholeExome.RP-1303.bam 22767710482 BAM hg19 0abd93c6-12d9-44b5-8d34-77397cbce77f storage1 +C243048.RNA-Seq.R1.R C243048 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/363afde2-4960-4b58-9fb5-783487373231/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ NA 363afde2-4960-4b58-9fb5-783487373231 storage1 +C243048.RNA-Seq.R1.T C243048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/098febb3-ede7-4533-b9f9-043c8d664e30/210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R1_001.fastq.gz 4481092171 FASTQ NA 098febb3-ede7-4533-b9f9-043c8d664e30 storage1 +C243048.RNA-Seq.R2.R C243048 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94c8d23c-057f-4075-9b03-ebddc6c46e7c/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R2_001.fastq.gz 3779949435 FASTQ NA 94c8d23c-057f-4075-9b03-ebddc6c46e7c storage1 +C243048.RNA-Seq.R2.T C243048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7aab69b-f720-4820-9589-e1e033ef3ee3/210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R2_001.fastq.gz 4627017636 FASTQ NA c7aab69b-f720-4820-9589-e1e033ef3ee3 storage1 C243048.WGS.N C243048 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27ab3f0c-0f11-47a1-a9db-7d4672351791/7316UP-1282-1105206.WholeGenome.RP-2158.bam 45626778138 BAM hg19 27ab3f0c-0f11-47a1-a9db-7d4672351791 storage1 C243048.WGS.R C243048 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72db3c9f-efad-4791-b6d5-eec918651a42/7316UP-1282-1105261.WholeGenome.RP-2158.bam 42877964474 BAM hg19 72db3c9f-efad-4791-b6d5-eec918651a42 storage1 +C243048.WGS.T.ADNA_94a7b89d C243048 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f60141d2-88a5-4976-9b89-ab2648c18585/7316UP-213.WholeGenome.RP-2158.bam 61469132170 BAM hg19 f60141d2-88a5-4976-9b89-ab2648c18585 storage1 C243048.WGS.T C243048 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/142d30eb-d2e2-4c33-8414-f2e9c84866ed/7316UP-213-1105246.WholeGenome.RP-2158.bam 52268981914 BAM hg19 142d30eb-d2e2-4c33-8414-f2e9c84866ed storage1 C243048.WXS.N C243048 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/115a4ff0-cdd2-416e-95a5-1d5cf3fc1fb8/7316UP-1282-1105206.WholeExome.RP-1303.bam 20741894205 BAM hg19 115a4ff0-cdd2-416e-95a5-1d5cf3fc1fb8 storage1 C243048.WXS.R C243048 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbd7c1e2-4e4a-42d8-9344-eb10d2c05922/7316UP-1282-1105261.WholeExome.RP-1303.bam 25962713150 BAM hg19 cbd7c1e2-4e4a-42d8-9344-eb10d2c05922 storage1 +C243048.WXS.T.ADNA_94a7b89d C243048 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/952c667a-4096-42a6-892b-d0e81731560f/7316UP-213.WholeExome.RP-1303.bam 23332361777 BAM hg19 952c667a-4096-42a6-892b-d0e81731560f storage1 C243048.WXS.T C243048 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/13cd0048-3145-4c19-be89-24bde2ca1da6/7316UP-213-1105246.WholeExome.RP-1303.bam 29270789494 BAM hg19 13cd0048-3145-4c19-be89-24bde2ca1da6 storage1 +C243909.RNA-Seq.R1.R C243909 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d/210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ NA b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d storage1 +C243909.RNA-Seq.R1.T C243909 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bfdab73-70f3-4d2b-8e02-8080bd13b2e9/210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R1_001.fastq.gz 3996224097 FASTQ NA 8bfdab73-70f3-4d2b-8e02-8080bd13b2e9 storage1 +C243909.RNA-Seq.R2.R C243909 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71ed75b3-d868-4335-b995-535c8d4f07c0/210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R2_001.fastq.gz 4036597415 FASTQ NA 71ed75b3-d868-4335-b995-535c8d4f07c0 storage1 +C243909.RNA-Seq.R2.T C243909 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88b1f7e9-068a-472e-bfd3-7b557881e6f9/210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R2_001.fastq.gz 4320994288 FASTQ NA 88b1f7e9-068a-472e-bfd3-7b557881e6f9 storage1 +C243909.WGS.T C243909 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54da4592-2a1c-4696-87e4-a0b8f2b0eaed/7316UP-219-1105241.WholeGenome.RP-2158.bam 56915003249 BAM hg19 54da4592-2a1c-4696-87e4-a0b8f2b0eaed storage1 C243909.WXS.N C243909 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d290276a-8306-4336-921a-16e61bdc4ead/7316UP-219-1105279.WholeExome.RP-1303.bam 28502225983 BAM hg19 d290276a-8306-4336-921a-16e61bdc4ead storage1 C243909.WXS.R C243909 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abe1406a-385e-4b82-bbe8-aac969c91966/7316UP-485-1105235.WholeExome.RP-1303.bam 23297906342 BAM hg19 abe1406a-385e-4b82-bbe8-aac969c91966 storage1 C243909.WXS.T C243909 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96c59667-865e-40c1-8dd9-cd08e128daeb/7316UP-219-1105241.WholeExome.RP-1303.bam 22953350618 BAM hg19 96c59667-865e-40c1-8dd9-cd08e128daeb storage1 +C247230.RNA-Seq.R1.R C247230 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/982111f4-0501-4138-a072-3243d58dd670/210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ NA 982111f4-0501-4138-a072-3243d58dd670 storage1 +C247230.RNA-Seq.R1.T C247230 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c52701e-f9d9-4fbf-9530-2d8e420b5078/210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R1_001.fastq.gz 3837839898 FASTQ NA 4c52701e-f9d9-4fbf-9530-2d8e420b5078 storage1 +C247230.RNA-Seq.R2.R C247230 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25e17967-5374-45f3-a76c-1d236667a8b2/210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R2_001.fastq.gz 3601477757 FASTQ NA 25e17967-5374-45f3-a76c-1d236667a8b2 storage1 +C247230.RNA-Seq.R2.T C247230 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd9ebef7-47a0-4365-a921-12a36feb035b/210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R2_001.fastq.gz 4058273725 FASTQ NA bd9ebef7-47a0-4365-a921-12a36feb035b storage1 C247230.WXS.N C247230 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b772baf-d183-401e-a925-bf90c0717c52/7316UP-243-1105280.WholeExome.RP-1303.bam 25993398731 BAM hg19 9b772baf-d183-401e-a925-bf90c0717c52 storage1 +C247230.WXS.R.ADNA_e9d04cd8 C247230 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ce277ba-4d70-49f1-9a79-517b1a0abde6/7316UP-243.WholeExome.RP-1303.bam 22789049179 BAM hg19 9ce277ba-4d70-49f1-9a79-517b1a0abde6 storage1 C247230.WXS.R C247230 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8807cca-8f0f-4399-861a-7a14e01a97f2/7316UP-243-1105229.WholeExome.RP-1303.bam 22180737177 BAM hg19 b8807cca-8f0f-4399-861a-7a14e01a97f2 storage1 +C247230.WXS.T.ADNA_0aa190bd C247230 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab95e72b-3a52-4b01-ab35-ac257492f4e9/7316UP-8.WholeExome.RP-1303.bam 27601184521 BAM hg19 ab95e72b-3a52-4b01-ab35-ac257492f4e9 storage1 C247230.WXS.T C247230 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dcba1f63-8aa5-4a23-8eae-e1c3b13a7335/7316UP-8-1105243.WholeExome.RP-1303.bam 27341900884 BAM hg19 dcba1f63-8aa5-4a23-8eae-e1c3b13a7335 storage1 +C259161.RNA-Seq.R1.R C259161 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04492d6a-768d-408d-8491-a3421e3d7fb1/210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ NA 04492d6a-768d-408d-8491-a3421e3d7fb1 storage1 +C259161.RNA-Seq.R1.T C259161 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99e448a9-f393-41a2-9c6a-46ed6a453a25/210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R1_001.fastq.gz 4076185110 FASTQ NA 99e448a9-f393-41a2-9c6a-46ed6a453a25 storage1 +C259161.RNA-Seq.R2.R C259161 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66fc2918-baf1-4cce-951f-423eec4d3e30/210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R2_001.fastq.gz 4236168874 FASTQ NA 66fc2918-baf1-4cce-951f-423eec4d3e30 storage1 +C259161.RNA-Seq.R2.T C259161 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef415675-ebd8-43c7-94ea-63da5ebf9db3/210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R2_001.fastq.gz 4363507516 FASTQ NA ef415675-ebd8-43c7-94ea-63da5ebf9db3 storage1 C259161.WGS.N C259161 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3da278c9-b808-4a2e-af20-5ba92f403ab0/7316UP-293-1105283.WholeGenome.RP-2158.bam 57896176406 BAM hg19 3da278c9-b808-4a2e-af20-5ba92f403ab0 storage1 C259161.WGS.R C259161 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9acde03d-85af-45b6-850f-fa97cc0c7340/7316UP-349-1105257.WholeGenome.RP-2158.bam 50639596227 BAM hg19 9acde03d-85af-45b6-850f-fa97cc0c7340 storage1 +C259161.WGS.T.ADNA_5c7e3295 C259161 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9dd5682-e558-42df-b76f-56dffe1d3e63/7316UP-293.WholeGenome.RP-2158.bam 51492350207 BAM hg19 b9dd5682-e558-42df-b76f-56dffe1d3e63 storage1 C259161.WGS.T C259161 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74371bec-c399-456a-b912-e49ef8cf7290/7316UP-293-1105250.WholeGenome.RP-2158.bam 57788463110 BAM hg19 74371bec-c399-456a-b912-e49ef8cf7290 storage1 C259161.WXS.N C259161 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fe5e6d3-0f58-49cf-b0f2-861cc836f83b/7316UP-293-1105283.WholeExome.RP-1303.bam 25717997268 BAM hg19 5fe5e6d3-0f58-49cf-b0f2-861cc836f83b storage1 C259161.WXS.R C259161 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f12b0fa6-8ad9-4f0b-a9e6-e27e6e26bec5/7316UP-349-1105257.WholeExome.RP-1303.bam 29700714795 BAM hg19 f12b0fa6-8ad9-4f0b-a9e6-e27e6e26bec5 storage1 C259161.WXS.T C259161 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f16c354e-4c82-4248-a6d1-2d52ed2aaf13/7316UP-293-1105250.WholeExome.RP-1303.bam 29802893632 BAM hg19 f16c354e-4c82-4248-a6d1-2d52ed2aaf13 storage1 +C266664.RNA-Seq.R1.T C266664 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d47ac642-9204-45da-a0b5-ea6a80d65139/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ NA d47ac642-9204-45da-a0b5-ea6a80d65139 storage1 +C266664.RNA-Seq.R2.T C266664 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1671b3e1-6b22-4326-bf41-49312e3c6829/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R2_001.fastq.gz 4195942259 FASTQ NA 1671b3e1-6b22-4326-bf41-49312e3c6829 storage1 C266664.WGS.N C266664 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4933d676-52c9-43fe-8946-9946412334c6/7316UP-393-1105287.WholeGenome.RP-2158.bam 59038265208 BAM hg19 4933d676-52c9-43fe-8946-9946412334c6 storage1 +C266664.WGS.R.ADNA_f5846b1c C266664 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ac25df6-1097-47be-ba43-a53283235015/7316UP-553.WholeGenome.RP-2158.bam 54234643027 BAM hg19 2ac25df6-1097-47be-ba43-a53283235015 storage1 C266664.WGS.R C266664 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c7c70af-1d81-42d2-859e-3b613a2c0d93/7316UP-553-1105234.WholeGenome.RP-2158.bam 66530087101 BAM hg19 9c7c70af-1d81-42d2-859e-3b613a2c0d93 storage1 +C266664.WGS.T.ADNA_5dbc58a2 C266664 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/455c35ce-ea41-4b99-bb0a-46816906b859/7316UP-393.WholeGenome.RP-2158.bam 61362965684 BAM hg19 455c35ce-ea41-4b99-bb0a-46816906b859 storage1 C266664.WXS.N C266664 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2dd83e7-1770-4ffa-bf6b-41ba9814306c/7316UP-393-1105287.WholeExome.RP-1303.bam 20596651439 BAM hg19 d2dd83e7-1770-4ffa-bf6b-41ba9814306c storage1 C266664.WXS.R C266664 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16f314d3-9c0d-4227-8af9-67e9e5027f8e/7316UP-553-1105234.WholeExome.RP-1303.bam 24219633494 BAM hg19 16f314d3-9c0d-4227-8af9-67e9e5027f8e storage1 +C266664.WXS.T.ADNA_5dbc58a2 C266664 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b809ed9-7f11-4a12-9402-43c8f12c93c8/7316UP-393.WholeExome.RP-1303.bam 32889072571 BAM hg19 1b809ed9-7f11-4a12-9402-43c8f12c93c8 storage1 C266664.WXS.T C266664 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b7af748-7592-49d9-957e-44e63c0f6e26/7316UP-393-1105269.WholeExome.RP-1303.bam 31877144001 BAM hg19 0b7af748-7592-49d9-957e-44e63c0f6e26 storage1 +C283515.RNA-Seq.R1.R C283515 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/543f557f-1beb-4456-a0fd-cec8d084ff20/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ NA 543f557f-1beb-4456-a0fd-cec8d084ff20 storage1 +C283515.RNA-Seq.R1.T C283515 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/788421a7-7d30-4bc6-b77a-688289cf5778/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R1_001.fastq.gz 4256039693 FASTQ NA 788421a7-7d30-4bc6-b77a-688289cf5778 storage1 +C283515.RNA-Seq.R2.R C283515 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43aa9185-30e8-46cc-81ff-279a1e9f2350/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R2_001.fastq.gz 4586968183 FASTQ NA 43aa9185-30e8-46cc-81ff-279a1e9f2350 storage1 +C283515.RNA-Seq.R2.T C283515 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5bccff6e-1343-4834-b5ce-71abd40aa308/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R2_001.fastq.gz 4571169592 FASTQ NA 5bccff6e-1343-4834-b5ce-71abd40aa308 storage1 C283515.WGS.N C283515 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7055e943-91d1-49a2-9191-e55ab3342d77/7316UP-504-1105290.WholeGenome.RP-2158.bam 62174322060 BAM hg19 7055e943-91d1-49a2-9191-e55ab3342d77 storage1 +C283515.WGS.R.ADNA_d7547996 C283515 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03347b56-bd16-41d2-aa03-41d9bc0948e8/7316UP-984.WholeGenome.RP-2158.bam 57538611032 BAM hg19 03347b56-bd16-41d2-aa03-41d9bc0948e8 storage1 C283515.WGS.R C283515 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02afa2ed-7278-4978-828d-79cc756ab420/7316UP-984-1105238.WholeGenome.RP-2158.bam 52101605944 BAM hg19 02afa2ed-7278-4978-828d-79cc756ab420 storage1 C283515.WXS.N C283515 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57eb649b-72ad-45ff-81a0-def3c0c38505/7316UP-504-1105290.WholeExome.RP-1303.bam 30160128143 BAM hg19 57eb649b-72ad-45ff-81a0-def3c0c38505 storage1 C283515.WXS.R C283515 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ced68fb8-edc5-4d38-9719-92d95bc271e2/7316UP-984-1105238.WholeExome.RP-1303.bam 23037540650 BAM hg19 ced68fb8-edc5-4d38-9719-92d95bc271e2 storage1 +C283515.WXS.T.ADNA_16970afa C283515 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c844fd6-1972-4f54-947f-9e802fba0a0c/7316UP-504.WholeExome.RP-1303.bam 29107187041 BAM hg19 5c844fd6-1972-4f54-947f-9e802fba0a0c storage1 C283515.WXS.T C283515 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87308625-5842-4300-9202-99ba70be896c/7316UP-504-1105193.WholeExome.RP-1303.bam 20800549103 BAM hg19 87308625-5842-4300-9202-99ba70be896c storage1 +C287328.RNA-Seq.R1.R C287328 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1500544e-8a1a-4d0d-a855-c856fd31993b/210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ NA 1500544e-8a1a-4d0d-a855-c856fd31993b storage1 +C287328.RNA-Seq.R1.T C287328 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57/210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R1_001.fastq.gz 4021895606 FASTQ NA fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57 storage1 +C287328.RNA-Seq.R2.R C287328 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60d74915-2063-4467-930b-7845844fbd7b/210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R2_001.fastq.gz 4282999398 FASTQ NA 60d74915-2063-4467-930b-7845844fbd7b storage1 +C287328.RNA-Seq.R2.T C287328 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7bd1a599-d790-46ba-8d41-5c9532d1d232/210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R2_001.fastq.gz 4377680066 FASTQ NA 7bd1a599-d790-46ba-8d41-5c9532d1d232 storage1 +C287328.WGS.T C287328 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f8bfbdb-c5ab-49f7-a398-3130a8a0f9ff/7316UP-534-1105223.WholeGenome.RP-2158.bam 61841060561 BAM hg19 2f8bfbdb-c5ab-49f7-a398-3130a8a0f9ff storage1 C287328.WXS.N C287328 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa55c9e6-5f54-4642-a1f3-aa5110440f74/7316UP-534-1105211.WholeExome.RP-1303.bam 26048801345 BAM hg19 aa55c9e6-5f54-4642-a1f3-aa5110440f74 storage1 C287328.WXS.R C287328 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c2e153d-dd81-4764-b6fd-a067c9a47d00/7316UP-1135-1105253.WholeExome.RP-1303.bam 23940352912 BAM hg19 3c2e153d-dd81-4764-b6fd-a067c9a47d00 storage1 C287328.WXS.T C287328 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a3a21a5-e572-44f0-ad0b-3adcd908f5c9/7316UP-534-1105223.WholeExome.RP-1303.bam 22424204561 BAM hg19 0a3a21a5-e572-44f0-ad0b-3adcd908f5c9 storage1 +C289419.RNA-Seq.R1.T C289419 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31e45219-fd63-4028-9ca3-e3fa1ca82f60/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ NA 31e45219-fd63-4028-9ca3-e3fa1ca82f60 storage1 +C289419.RNA-Seq.R2.T C289419 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd0e07cb-3358-4e26-88fa-5cc0839cda33/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R2_001.fastq.gz 3881768353 FASTQ NA cd0e07cb-3358-4e26-88fa-5cc0839cda33 storage1 C289419.WGS.N C289419 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e90c2130-4037-4410-8cb5-da284867906a/7316UP-587-1105213.WholeGenome.RP-2158.bam 52502221675 BAM hg19 e90c2130-4037-4410-8cb5-da284867906a storage1 +C289419.WGS.R.ADNA_4747d148 C289419 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78c622ca-de9d-4208-9ee5-7c5be7e50bcd/7316UP-587.WholeGenome.RP-2158.bam 55102241327 BAM hg19 78c622ca-de9d-4208-9ee5-7c5be7e50bcd storage1 C289419.WGS.R C289419 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ae88dfc-f9c8-465c-8f37-74196b627a80/7316UP-587-1105225.WholeGenome.RP-2158.bam 56534424736 BAM hg19 3ae88dfc-f9c8-465c-8f37-74196b627a80 storage1 +C289419.WGS.T.ADNA_ebf29e44 C289419 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb931cb0-6b32-4e8f-b0b9-8bc0f8097750/7316UP-547.WholeGenome.RP-2158.bam 54186350616 BAM hg19 fb931cb0-6b32-4e8f-b0b9-8bc0f8097750 storage1 C289419.WGS.T C289419 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/849c3fa9-d265-4a34-b1c5-a6130045cb7a/7316UP-547-1105270.WholeGenome.RP-2158.bam 54527158005 BAM hg19 849c3fa9-d265-4a34-b1c5-a6130045cb7a storage1 C289419.WXS.N C289419 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0e8eefb-202d-4629-9acd-a94b4e1864a9/7316UP-587-1105213.WholeExome.RP-1303.bam 25496316378 BAM hg19 d0e8eefb-202d-4629-9acd-a94b4e1864a9 storage1 +C289419.WXS.R.ADNA_4747d148 C289419 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77a7e8d5-aa0f-4598-891a-4bd243f8d40d/7316UP-587.WholeExome.RP-1303.bam 25018513643 BAM hg19 77a7e8d5-aa0f-4598-891a-4bd243f8d40d storage1 C289419.WXS.R C289419 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39fd310f-e21d-484e-8764-95478d310803/7316UP-587-1105225.WholeExome.RP-1303.bam 22476273863 BAM hg19 39fd310f-e21d-484e-8764-95478d310803 storage1 C289419.WXS.T C289419 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a28c6ed4-40bd-415b-b9c7-590a62ec8555/7316UP-547-1105270.WholeExome.RP-1303.bam 27840699156 BAM hg19 a28c6ed4-40bd-415b-b9c7-590a62ec8555 storage1 +C298152.RNA-Seq.R1.R C298152 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc854351-5e28-4fa1-ba76-ab67e8069f29/210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ NA cc854351-5e28-4fa1-ba76-ab67e8069f29 storage1 +C298152.RNA-Seq.R1.T C298152 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbcc610d-609b-4631-a7fb-ce1d9879e0a1/210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R1_001.fastq.gz 4161951146 FASTQ NA dbcc610d-609b-4631-a7fb-ce1d9879e0a1 storage1 +C298152.RNA-Seq.R2.R C298152 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/114ff49b-5eae-4fa1-8beb-1f4ae9cd8638/210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4074073377 FASTQ NA 114ff49b-5eae-4fa1-8beb-1f4ae9cd8638 storage1 +C298152.RNA-Seq.R2.T C298152 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96a07c32-d50d-48da-b9da-fdd6b37eac1c/210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R2_001.fastq.gz 4490884067 FASTQ NA 96a07c32-d50d-48da-b9da-fdd6b37eac1c storage1 C298152.WGS.N C298152 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ff18167-b8d3-4e22-9eb1-629b71ec9e77/7316UP-426-1105208.WholeGenome.RP-2158.bam 52239643037 BAM hg19 9ff18167-b8d3-4e22-9eb1-629b71ec9e77 storage1 C298152.WGS.R C298152 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c820d71e-45d9-42a5-afb5-f663772bf93d/7316UP-574-1105224.WholeGenome.RP-2158.bam 41014723398 BAM hg19 c820d71e-45d9-42a5-afb5-f663772bf93d storage1 +C298152.WGS.T.ADNA_cb6d6363 C298152 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cce2775-8b95-4d16-9214-9c8ea3941e00/7316UP-426.WholeGenome.RP-2158.bam 58796212790 BAM hg19 6cce2775-8b95-4d16-9214-9c8ea3941e00 storage1 C298152.WGS.T C298152 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/deecc9f5-4d5e-4279-8878-4dcf92b9cfee/7316UP-426-1105263.WholeGenome.RP-2158.bam 49286697852 BAM hg19 deecc9f5-4d5e-4279-8878-4dcf92b9cfee storage1 C298152.WXS.N C298152 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d887a99-c66a-4607-90ca-bb8dfd2859f6/7316UP-426-1105208.WholeExome.RP-1303.bam 25672742169 BAM hg19 7d887a99-c66a-4607-90ca-bb8dfd2859f6 storage1 +C298152.WXS.R.ADNA_59d69c3d C298152 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39dcc1cd-5629-4b3b-9842-e60f92135a92/7316UP-574.WholeExome.RP-1303.bam 22111980929 BAM hg19 39dcc1cd-5629-4b3b-9842-e60f92135a92 storage1 C298152.WXS.R C298152 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f94f3fac-a780-4952-9e78-6e1ef8bbec9d/7316UP-574-1105224.WholeExome.RP-1303.bam 22495865946 BAM hg19 f94f3fac-a780-4952-9e78-6e1ef8bbec9d storage1 C298152.WXS.T C298152 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df9aa884-5b5b-4f19-89e3-732c4a4a45f3/7316UP-426-1105263.WholeExome.RP-1303.bam 23507037727 BAM hg19 df9aa884-5b5b-4f19-89e3-732c4a4a45f3 storage1 C317832.WGS.N C317832 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91c2215c-9340-4ea4-a15e-783589faf7b6/7316UP-435-1105209.WholeGenome.RP-2158.bam 50849044617 BAM hg19 91c2215c-9340-4ea4-a15e-783589faf7b6 storage1 +C317832.WGS.T.ADNA_4b7f0398 C317832 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e46c08f7-a93d-4c16-b65a-040c13d4e967/7316UP-435.WholeGenome.RP-2158.bam 53288759776 BAM hg19 e46c08f7-a93d-4c16-b65a-040c13d4e967 storage1 C317832.WGS.T C317832 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84e61057-d0fb-4f04-b775-d961860a52f4/7316UP-435-1105196.WholeGenome.RP-2158.bam 44958525818 BAM hg19 84e61057-d0fb-4f04-b775-d961860a52f4 storage1 C317832.WXS.N C317832 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dcb115cc-591d-4eb6-a360-64d4b9d86ef8/7316UP-435-1105209.WholeExome.RP-1303.bam 26556342235 BAM hg19 dcb115cc-591d-4eb6-a360-64d4b9d86ef8 storage1 +C317832.WXS.R C317832 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e447bddd-4fa5-4877-993f-40f7483e19ee/7316UP-1110.WholeExome.RP-1303.bam 27081556019 BAM hg19 e447bddd-4fa5-4877-993f-40f7483e19ee storage1 +C317832.WXS.T.ADNA_4b7f0398 C317832 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7cc3fc4-a124-47a5-8153-75799ffb0d7b/7316UP-435.WholeExome.RP-1303.bam 28697889466 BAM hg19 f7cc3fc4-a124-47a5-8153-75799ffb0d7b storage1 C317832.WXS.T C317832 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e02a9123-6688-4178-8677-89fd8134cc3d/7316UP-435-1105196.WholeExome.RP-1303.bam 27481233727 BAM hg19 e02a9123-6688-4178-8677-89fd8134cc3d storage1 +C330255.RNA-Seq.R1.R C330255 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecde968c-8d85-48f1-9b99-adf4c4f9c39c/210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ NA ecde968c-8d85-48f1-9b99-adf4c4f9c39c storage1 +C330255.RNA-Seq.R2.R C330255 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d238885-5196-4422-9eed-12e61f4703be/210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R2_001.fastq.gz 3991687450 FASTQ NA 7d238885-5196-4422-9eed-12e61f4703be storage1 C330255.WGS.N C330255 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a9eccce-70b8-4e66-85ab-24ec1508dee3/7316UP-361-1105212.WholeGenome.RP-2158.bam 52965115662 BAM hg19 9a9eccce-70b8-4e66-85ab-24ec1508dee3 storage1 C330255.WGS.R C330255 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b958b9b4-1eff-4e71-ad0a-4c94548031bd/7316UP-498-1105232.WholeGenome.RP-2158.bam 74755089697 BAM hg19 b958b9b4-1eff-4e71-ad0a-4c94548031bd storage1 +C330255.WGS.T C330255 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9c95e92-ea1e-4469-b76e-fadaab18848e/7316UP-361.WholeGenome.RP-2158.bam 58000841700 BAM hg19 c9c95e92-ea1e-4469-b76e-fadaab18848e storage1 C330255.WXS.N C330255 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a15376d-7a40-4bdb-a9b1-df6a0096be32/7316UP-361-1105212.WholeExome.RP-1303.bam 25256547678 BAM hg19 0a15376d-7a40-4bdb-a9b1-df6a0096be32 storage1 +C330255.WXS.R.ADNA_cf2197af C330255 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/876d22c5-5f4b-4d94-809c-6dab7df175e2/7316UP-498.WholeExome.RP-1303.bam 26484461682 BAM hg19 876d22c5-5f4b-4d94-809c-6dab7df175e2 storage1 C330255.WXS.R C330255 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/083f8ddc-75e5-4195-a088-65c614df023a/7316UP-498-1105232.WholeExome.RP-1303.bam 22564329011 BAM hg19 083f8ddc-75e5-4195-a088-65c614df023a storage1 +C330255.WXS.T C330255 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2dac6b52-9e5f-4b31-a1b8-aa596110be2e/7316UP-361.WholeExome.RP-1303.bam 47917286279 BAM hg19 2dac6b52-9e5f-4b31-a1b8-aa596110be2e storage1 +C383391.RNA-Seq.R1.R.ARNA_7418231a C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d0d950-c97c-4179-8150-9154a973d456/210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ NA 02d0d950-c97c-4179-8150-9154a973d456 storage1 +C383391.RNA-Seq.R1.R C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67f1d243-6790-4916-8e93-e9712739d6d2/210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 3361626903 FASTQ NA 67f1d243-6790-4916-8e93-e9712739d6d2 storage1 +C383391.RNA-Seq.R1.T C383391 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1cdfb94-8758-4d2b-92bf-db1bac25b7e9/210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R1_001.fastq.gz 3545435152 FASTQ NA a1cdfb94-8758-4d2b-92bf-db1bac25b7e9 storage1 +C383391.RNA-Seq.R2.R.ARNA_7418231a C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d3003c2-2047-421b-9d96-18dd27804338/210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R2_001.fastq.gz 4496680542 FASTQ NA 1d3003c2-2047-421b-9d96-18dd27804338 storage1 +C383391.RNA-Seq.R2.R C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79a1e05d-5544-4bb7-8d1b-0eb7ba887f43/210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 3793927938 FASTQ NA 79a1e05d-5544-4bb7-8d1b-0eb7ba887f43 storage1 +C383391.RNA-Seq.R2.T C383391 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e25981ec-ac52-4a07-a09e-f82495748135/210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R2_001.fastq.gz 3726226989 FASTQ NA e25981ec-ac52-4a07-a09e-f82495748135 storage1 +C383391.WGS.R.ADNA_e70392a0 C383391 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10a5d77e-713b-43a6-93d5-a6e26be1aa59/7316UP-1581-1105265.WholeGenome.RP-2158.bam 58288588843 BAM hg19 10a5d77e-713b-43a6-93d5-a6e26be1aa59 storage1 +C383391.WGS.R.ADNA_f8dd154c C383391 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75d29a76-a9e8-4a57-b231-22c907d64783/7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM hg19 75d29a76-a9e8-4a57-b231-22c907d64783 storage1 +C383391.WGS.R.ADNA_f8dd154c C383391 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92903bf8-833a-4614-a6ea-00fcbb929ffd/7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM hg19 92903bf8-833a-4614-a6ea-00fcbb929ffd storage1 +C383391.WGS.R C383391 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7894b548-1983-4d54-85b5-1641d3af56d7/7316UP-1766-1105264.WholeGenome.RP-2158.bam 56126633437 BAM hg19 7894b548-1983-4d54-85b5-1641d3af56d7 storage1 C383391.WXS.N C383391 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c0487dd4-37f2-4c32-93b6-0d0de66c547a/7316UP-1108-1105272.WholeExome.RP-1303.bam 24745797287 BAM hg19 c0487dd4-37f2-4c32-93b6-0d0de66c547a storage1 C383391.WXS.R.ADNA_e70392a0 C383391 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7904fa5e-78b1-420f-bf6a-1c2297bc7895/7316UP-1581-1105265.WholeExome.RP-1303.bam 26619962510 BAM hg19 7904fa5e-78b1-420f-bf6a-1c2297bc7895 storage1 +C383391.WXS.R.ADNA_f8dd154c C383391 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f63db56a-cf7f-49d6-b7ae-e112a8716197/7316UP-1766.WholeExome.RP-1303.bam 25087107391 BAM hg19 f63db56a-cf7f-49d6-b7ae-e112a8716197 storage1 C383391.WXS.R C383391 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dab5b5b-d531-4577-99ae-34db7950f86f/7316UP-1766-1105264.WholeExome.RP-1303.bam 29360557443 BAM hg19 6dab5b5b-d531-4577-99ae-34db7950f86f storage1 +C383391.WXS.T.ADNA_4db2e37f C383391 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48566235-21fb-426d-aca8-c2940c9ff1a4/7316UP-1108.WholeExome.RP-1303.bam 27298437644 BAM hg19 48566235-21fb-426d-aca8-c2940c9ff1a4 storage1 C383391.WXS.T C383391 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49c281c9-1066-4546-828f-5e20879f0238/7316UP-1108-1105202.WholeExome.RP-1303.bam 27655982134 BAM hg19 49c281c9-1066-4546-828f-5e20879f0238 storage1 C3L-00001.WGS.A.hg38 C3L-00001 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f516c95-70be-4add-9af9-19d6428edd44/51f174e6-1be7-4819-9339-b95193c935bd_wgs_gdc_realn.bam 86803129008 BAM hg38 7f516c95-70be-4add-9af9-19d6428edd44 storage1 C3L-00001.WGS.N.hg38 C3L-00001 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d301dc5-ebb2-47e0-9a9f-e31ed41b4542/2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 202924825766 BAM hg38 1d301dc5-ebb2-47e0-9a9f-e31ed41b4542 storage1 @@ -1712,6 +1859,8 @@ C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal /storage1/f C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dd7c9c7-d4a6-411f-990a-151757a7e63e/b7db871b-6973-4d62-a905-91c2d7dd330d.rna_seq.genomic.gdc_realn.bam 8854255208 BAM hg38 1dd7c9c7-d4a6-411f-990a-151757a7e63e storage1 C3L-04080.WGS.N.hg38 C3L-04080 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68ab3e9a-bd37-44be-8133-99d381095699/03f3fbda-bbd7-4649-b677-7e8fcbbacb5b_wgs_gdc_realn.bam 88324086087 BAM hg38 68ab3e9a-bd37-44be-8133-99d381095699 storage1 C3L-04080.WGS.T.hg38 C3L-04080 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd0a5edf-f331-4563-818d-060962d79803/f5c201b6-81e1-4e77-af6b-368926a95177_wgs_gdc_realn.bam 90856548819 BAM hg38 fd0a5edf-f331-4563-818d-060962d79803 storage1 +C3L-04081.RNA-Seq.R1.T C3L-04081 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff00dd51-d902-4563-b623-786e9f78aaf5/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ NA ff00dd51-d902-4563-b623-786e9f78aaf5 storage1 +C3L-04081.RNA-Seq.R2.T C3L-04081 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdef277c-4632-450b-8030-037e3dbe8b32/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ NA bdef277c-4632-450b-8030-037e3dbe8b32 storage1 C3L-04081.WGS.N C3L-04081 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f67faeb-027b-43ce-b000-3866c6ebf473/CPT0264060002.WholeGenome.RP-2158.bam 22559972260 BAM hg19 2f67faeb-027b-43ce-b000-3866c6ebf473 storage1 C3L-04081.WGS.T C3L-04081 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e58c7501-6b0f-47d9-a0d9-fa72b6e25f39/CPT0265510008.WholeGenome.RP-2158.bam 25514113575 BAM hg19 e58c7501-6b0f-47d9-a0d9-fa72b6e25f39 storage1 C3L-04081.WXS.N C3L-04081 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df9455fb-b575-4002-9e2d-d7fb09fbebaa/CPT0264060002.WholeExome.RP-1303.bam 23994779930 BAM hg19 df9455fb-b575-4002-9e2d-d7fb09fbebaa storage1 @@ -1961,6 +2110,8 @@ C3L-05427.WGS.N.hg38 C3L-05427 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-05427.WGS.T.hg38 C3L-05427 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4329ac2a-b1af-4698-9bc5-8cf6776181b4/9a304621-e269-441a-97e1-ada9ebee23ab_wgs_gdc_realn.bam 90804062569 BAM hg38 4329ac2a-b1af-4698-9bc5-8cf6776181b4 storage1 C3L-05428.WGS.N.hg38 C3L-05428 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c8aa6d0-c603-40c5-ad5e-96c12012e21e/dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wgs_gdc_realn.bam 78704546334 BAM hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e storage1 C3L-05428.WGS.T.hg38 C3L-05428 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30a31e54-8637-431b-ad11-88efc4c79940/d15d106b-64ab-4e62-a0f3-dd22920946b7_wgs_gdc_realn.bam 71384825686 BAM hg38 30a31e54-8637-431b-ad11-88efc4c79940 storage1 +C3L-05481.RNA-Seq.R1.T.UNK_zmE5or7 C3L-05481 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3943d597-a775-439b-a983-db12f9b0ec2d/211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ NA 3943d597-a775-439b-a983-db12f9b0ec2d storage1 +C3L-05481.RNA-Seq.R2.T.UNK_zmE5or7 C3L-05481 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23eac32e-93a9-48a9-8cfd-f14448fb7fd5/211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R2_001.fastq.gz 5149213973 FASTQ NA 23eac32e-93a9-48a9-8cfd-f14448fb7fd5 storage1 C3L-05481.WGS.N C3L-05481 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb8107e4-5d08-4ec2-864c-ef43b68e9592/CPT0402530002.WholeGenome.RP-2158.bam 29970507182 BAM hg19 bb8107e4-5d08-4ec2-864c-ef43b68e9592 storage1 C3L-05481.WGS.T C3L-05481 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/877bc903-d839-4593-9bda-139d1e265cd6/CPT0406370007.WholeGenome.RP-2158.bam 26730645651 BAM hg19 877bc903-d839-4593-9bda-139d1e265cd6 storage1 C3L-05481.WXS.N C3L-05481 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1266ab9-bddb-4450-a91c-99bef557e50c/CPT0402530002.WholeExome.RP-1303.bam 25763962021 BAM hg19 e1266ab9-bddb-4450-a91c-99bef557e50c storage1 @@ -1975,18 +2126,26 @@ C3L-05849.WGS.N.hg38 C3L-05849 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-05849.WGS.T.hg38 C3L-05849 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e/6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wgs_gdc_realn.bam 70891852385 BAM hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e storage1 C3L-06169.WGS.N.hg38 C3L-06169 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/535ed714-d6e5-4a74-99b7-ba78acdffa9a/0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 68073812557 BAM hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a storage1 C3L-06169.WGS.T.hg38 C3L-06169 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2/4aa15ba7-8f09-406f-9950-0dbaad1751f0_wgs_gdc_realn.bam 75314839042 BAM hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 storage1 +C3L-06625.RNA-Seq.R1.T C3L-06625 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54aee35f-9cd2-4a3b-9c49-dbffe0677d13/210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ NA 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 storage1 +C3L-06625.RNA-Seq.R2.T C3L-06625 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a16d6ea-281b-440a-9157-095d8785f68a/210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R2_001.fastq.gz 3833373967 FASTQ NA 4a16d6ea-281b-440a-9157-095d8785f68a storage1 C3L-06625.WGS.N C3L-06625 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8557dfec-f07f-4653-8321-b7f07f2346f1/CPT0405340002.WholeGenome.RP-2158.bam 24402990127 BAM hg19 8557dfec-f07f-4653-8321-b7f07f2346f1 storage1 C3L-06625.WGS.T C3L-06625 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eddaab40-a3b4-4285-bef3-e8bc7061f1eb/CPT0406420007.WholeGenome.RP-2158.bam 26826605690 BAM hg19 eddaab40-a3b4-4285-bef3-e8bc7061f1eb storage1 C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dff80e81-9356-4055-8da6-f47c2c50c4b0/CPT0405340002.WholeExome.RP-1303.bam 26868199263 BAM hg19 dff80e81-9356-4055-8da6-f47c2c50c4b0 storage1 C3L-06625.WXS.T C3L-06625 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/890457f0-bee4-4471-aab4-2343d2d208a9/CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM hg19 890457f0-bee4-4471-aab4-2343d2d208a9 storage1 +C3L-07202.RNA-Seq.R1.T C3L-07202 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d2a4b38-4741-48ac-bd06-58e5a7397594/210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ NA 0d2a4b38-4741-48ac-bd06-58e5a7397594 storage1 +C3L-07202.RNA-Seq.R2.T C3L-07202 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e0f8f05-b887-4c26-b196-f8d137d04b38/210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R2_001.fastq.gz 5307823033 FASTQ NA 9e0f8f05-b887-4c26-b196-f8d137d04b38 storage1 C3L-07202.WGS.N C3L-07202 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be5343f5-50ec-4556-826f-2f78a7c3fb88/CPT0408730002.WholeGenome.RP-2158.bam 23879461295 BAM hg19 be5343f5-50ec-4556-826f-2f78a7c3fb88 storage1 C3L-07202.WGS.T C3L-07202 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd7ee9e2-1221-4100-b46b-746fee3ffcc5/CPT0407650010.WholeGenome.RP-2158.bam 22112867784 BAM hg19 bd7ee9e2-1221-4100-b46b-746fee3ffcc5 storage1 C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cfa2645-0420-4d57-a7e6-0fba83c81c42/CPT0408730002.WholeExome.RP-1303.bam 26749694695 BAM hg19 9cfa2645-0420-4d57-a7e6-0fba83c81c42 storage1 C3L-07202.WXS.T C3L-07202 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08c3554c-d4d2-4e22-a091-2a8a22a88d90/CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM hg19 08c3554c-d4d2-4e22-a091-2a8a22a88d90 storage1 +C3L-07213.RNA-Seq.R1.T C3L-07213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3414943-3507-49d3-8c9f-c50c7721b209/210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ NA a3414943-3507-49d3-8c9f-c50c7721b209 storage1 +C3L-07213.RNA-Seq.R2.T C3L-07213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea6ad82f-b787-4ee4-820c-f4b30dd9d61c/210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R2_001.fastq.gz 3605214139 FASTQ NA ea6ad82f-b787-4ee4-820c-f4b30dd9d61c storage1 C3L-07213.WGS.N C3L-07213 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e552b00d-62c3-4105-9e2a-4a8eff730bbb/CPT0408780002.WholeGenome.RP-2158.bam 30606188785 BAM hg19 e552b00d-62c3-4105-9e2a-4a8eff730bbb storage1 C3L-07213.WGS.T C3L-07213 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/512018cc-6dda-4966-acea-7e5655cbde7a/CPT0407970010.WholeGenome.RP-2158.bam 21192425543 BAM hg19 512018cc-6dda-4966-acea-7e5655cbde7a storage1 C3L-07213.WXS.N C3L-07213 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e4ad5e7-fe94-4252-a927-7e60bfbddf0d/CPT0408780002.WholeExome.RP-1303.bam 24378992351 BAM hg19 2e4ad5e7-fe94-4252-a927-7e60bfbddf0d storage1 C3L-07213.WXS.T C3L-07213 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b215bb0-a079-4c59-b74a-c3263ccfe118/CPT0407970010.WholeExome.RP-1303.bam 20738364712 BAM hg19 6b215bb0-a079-4c59-b74a-c3263ccfe118 storage1 +C3L-07611.RNA-Seq.R1.T C3L-07611 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a19a4590-1bba-4407-8833-4c424dbd4e7a/210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ NA a19a4590-1bba-4407-8833-4c424dbd4e7a storage1 +C3L-07611.RNA-Seq.R2.T C3L-07611 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/715c0803-92be-4427-84a0-318fb948c958/210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R2_001.fastq.gz 4019885625 FASTQ NA 715c0803-92be-4427-84a0-318fb948c958 storage1 C3L-07611.WGS.N C3L-07611 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1679fa71-9071-4fbd-935a-f4e78426660b/CPT0408580002.WholeGenome.RP-2158.bam 29383404617 BAM hg19 1679fa71-9071-4fbd-935a-f4e78426660b storage1 C3L-07611.WGS.T C3L-07611 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89f9ad5f-5d86-4051-a85d-38d4aadfa686/CPT0408500007.WholeGenome.RP-2158.bam 26632148378 BAM hg19 89f9ad5f-5d86-4051-a85d-38d4aadfa686 storage1 C3L-07611.WXS.N C3L-07611 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b7849bc-141f-4fcd-9d8e-050d04c9d724/CPT0408580002.WholeExome.RP-1303.bam 26865804794 BAM hg19 1b7849bc-141f-4fcd-9d8e-050d04c9d724 storage1 @@ -2582,6 +2741,8 @@ C3N-01179.WGS.N.hg38 C3N-01179 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-01179.WGS.T.hg38 C3N-01179 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14534e70-f589-4bf0-9fb7-25f0c7725131/33eb4b5e-1c4e-4d98-b6c0-5753fe05740e_gdc_realn.bam 97566593847 BAM hg38 14534e70-f589-4bf0-9fb7-25f0c7725131 storage1 C3N-01180.WGS.N.hg38 C3N-01180 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcc33626-4667-47c9-a402-8746520a80dd/05e1d252-9d46-47b7-9948-9b5dd30e67e3_gdc_realn.bam 97287608468 BAM hg38 bcc33626-4667-47c9-a402-8746520a80dd storage1 C3N-01180.WGS.T.hg38 C3N-01180 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dcc1020-894b-4352-826d-0da39a09de2b/5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 99294390661 BAM hg38 1dcc1020-894b-4352-826d-0da39a09de2b storage1 +C3N-01191.RNA-Seq.R1.A C3N-01191 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4/210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ NA 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 storage1 +C3N-01191.RNA-Seq.R2.A C3N-01191 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ee179a1-f928-4601-b0a9-647dad31f4fd/210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R2_001.fastq.gz 4572187365 FASTQ NA 7ee179a1-f928-4601-b0a9-647dad31f4fd storage1 C3N-01191.WXS.A C3N-01191 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db0aa74f-75b0-4c87-8267-7e7d449e76db/CPT0402700007.WholeExome.RP-1303.bam 28467491827 BAM hg19 db0aa74f-75b0-4c87-8267-7e7d449e76db storage1 C3N-01191.WXS.N C3N-01191 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42123d2d-53fd-445f-a834-939085063605/CPT0402750002.WholeExome.RP-1303.bam 35545540392 BAM hg19 42123d2d-53fd-445f-a834-939085063605 storage1 C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e0cac4e-ae60-4a00-a3f3-97193372485d/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.chimeric.gdc_realn.bam 53111853 BAM hg38 0e0cac4e-ae60-4a00-a3f3-97193372485d storage1 @@ -2595,6 +2756,8 @@ C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0735aac-d346-43ba-81c1-4054b7c906c3/1a4dcfe0-7950-4957-ba2d-a52e74c3eac7.rna_seq.transcriptome.gdc_realn.bam 7190041368 BAM hg38 a0735aac-d346-43ba-81c1-4054b7c906c3 storage1 C3N-01196.WGS.N.hg38 C3N-01196 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f1c0db8-a938-444a-a1b7-d92ead28e401/2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 109344171761 BAM hg38 1f1c0db8-a938-444a-a1b7-d92ead28e401 storage1 C3N-01196.WGS.T.hg38 C3N-01196 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27/f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 102911297394 BAM hg38 478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27 storage1 +C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 +C3N-01197.RNA-Seq.R2.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3746a172-d4af-4f52-9dd9-01e6db58f3d7/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ NA 3746a172-d4af-4f52-9dd9-01e6db58f3d7 storage1 C3N-01197.WGS.N.hg38 C3N-01197 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d103cd5-b6ba-499c-b86d-ee90e7722972/ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 101210139062 BAM hg38 8d103cd5-b6ba-499c-b86d-ee90e7722972 storage1 C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69bc2a10-0aee-46d4-8974-e138bea74760/8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 119236219494 BAM hg38 69bc2a10-0aee-46d4-8974-e138bea74760 storage1 C3N-01197.WXS.A C3N-01197 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d74445a1-60a3-4d33-a053-cb9ef300db97/CPT0402600013.WholeExome.RP-1303.bam 17913496431 BAM hg19 d74445a1-60a3-4d33-a053-cb9ef300db97 storage1 @@ -2668,6 +2831,8 @@ C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-01364.RNA-Seq.transcriptome.T.hg38 C3N-01364 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9c26957-61d6-40d8-b44a-babbb4768b13/a0e8a67a-dbd0-48f5-909b-3be648f0b277.rna_seq.transcriptome.gdc_realn.bam 9148519699 BAM hg38 c9c26957-61d6-40d8-b44a-babbb4768b13 storage1 C3N-01364.WGS.N.hg38 C3N-01364 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e78972e-d40d-49c7-9dea-80a2ae300520/49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wgs_gdc_realn.bam 90233355921 BAM hg38 2e78972e-d40d-49c7-9dea-80a2ae300520 storage1 C3N-01364.WGS.T.hg38 C3N-01364 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44b98b50-87ea-491b-bd05-5fa6650a8350/5f6180da-9f43-41a4-ac5b-816dd3297285_wgs_gdc_realn.bam 91034187503 BAM hg38 44b98b50-87ea-491b-bd05-5fa6650a8350 storage1 +C3N-01365.RNA-Seq.R1.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9936d4a4-b553-40fc-9739-16e57a11ecee/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ NA 9936d4a4-b553-40fc-9739-16e57a11ecee storage1 +C3N-01365.RNA-Seq.R2.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10b7380d-90bc-47db-8580-ec64ccc6dea6/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ NA 10b7380d-90bc-47db-8580-ec64ccc6dea6 storage1 C3N-01365.WXS.A C3N-01365 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca63dc64-16bb-43bd-ad1b-55236ecc7241/CPT0402900007.WholeExome.RP-1303.bam 30135454971 BAM hg19 ca63dc64-16bb-43bd-ad1b-55236ecc7241 storage1 C3N-01365.WXS.N C3N-01365 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4aefb216-cefd-4be3-8652-8da7bba9223d/CPT0403010002.WholeExome.RP-1303.bam 26391979122 BAM hg19 4aefb216-cefd-4be3-8652-8da7bba9223d storage1 C3N-01366.RNA-Seq.chimeric.T.hg38 C3N-01366 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f312c43-28e4-4be1-a580-a617e7ab9ffc/825b7a02-a331-4c5b-9801-1e1e7c8901ec.rna_seq.chimeric.gdc_realn.bam 26760419 BAM hg38 6f312c43-28e4-4be1-a580-a617e7ab9ffc storage1 @@ -3450,6 +3615,8 @@ C3N-02683.WGS.N.hg38 C3N-02683 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-02683.WGS.T.hg38 C3N-02683 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/126f97d8-c3e5-4676-87e4-f0e71791a784/17fb3ecc-d825-4e43-a854-3494772f2488_wgs_gdc_realn.bam 60609807639 BAM hg38 126f97d8-c3e5-4676-87e4-f0e71791a784 storage1 C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0263ae2-aa97-470b-9b51-bb94d28b6edc/63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM hg38 d0263ae2-aa97-470b-9b51-bb94d28b6edc storage1 C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69b5d037-e728-49dc-8fa6-ff955e5ace97/17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM hg38 69b5d037-e728-49dc-8fa6-ff955e5ace97 storage1 +C3N-02684.RNA-Seq.R1.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9d5ecfa-3887-4f7c-876b-e7addf0fa54d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ NA e9d5ecfa-3887-4f7c-876b-e7addf0fa54d storage1 +C3N-02684.RNA-Seq.R2.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7513f50c-a395-49c5-8076-da5d97a21a2d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ NA 7513f50c-a395-49c5-8076-da5d97a21a2d storage1 C3N-02684.WXS.A C3N-02684 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d15b182d-611b-41a1-b525-b1debc36c6e4/CPT0404570007.WholeExome.RP-1303.bam 27582047056 BAM hg19 d15b182d-611b-41a1-b525-b1debc36c6e4 storage1 C3N-02684.WXS.N C3N-02684 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01198a6c-3221-44f0-97b0-2f583b4b1f54/CPT0404640002.WholeExome.RP-1303.bam 29153735919 BAM hg19 01198a6c-3221-44f0-97b0-2f583b4b1f54 storage1 C3N-02688.WGS.N.hg38 C3N-02688 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3874521a-91da-4fe6-aa99-5c5a25f74594/7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wgs_gdc_realn.bam 73583032406 BAM hg38 3874521a-91da-4fe6-aa99-5c5a25f74594 storage1 @@ -3671,6 +3838,8 @@ C3N-03025.WGS.N.hg38 C3N-03025 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-03025.WGS.T.hg38 C3N-03025 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e5ce309-2ebb-46ee-abf4-570a730bc5b8/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wgs_gdc_realn.bam 82837102023 BAM hg38 6e5ce309-2ebb-46ee-abf4-570a730bc5b8 storage1 C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4/e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM hg38 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 storage1 C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/325ed822-683e-457a-9687-2ade3fcd0bfe/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM hg38 325ed822-683e-457a-9687-2ade3fcd0bfe storage1 +C3N-03026.RNA-Seq.R1.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cf7ffc2-885e-4bc9-94fb-7d88e689ec88/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ NA 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 storage1 +C3N-03026.RNA-Seq.R2.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f826f72f-036c-4802-869d-9f33a5289ab1/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R2_001.fastq.gz 4747391657 FASTQ NA f826f72f-036c-4802-869d-9f33a5289ab1 storage1 C3N-03026.WXS.A C3N-03026 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ce8bd00b-7413-437c-b0cc-06a5aced75dc/CPT0404650013.WholeExome.RP-1303.bam 30030352752 BAM hg19 ce8bd00b-7413-437c-b0cc-06a5aced75dc storage1 C3N-03026.WXS.N C3N-03026 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bbc8a8e-daa0-4414-afad-656d4b7c1b8a/CPT0404820002.WholeExome.RP-1303.bam 28972194720 BAM hg19 8bbc8a8e-daa0-4414-afad-656d4b7c1b8a storage1 C3N-03027.WGS.N.hg38 C3N-03027 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61899a8a-9726-4e04-8e6b-0199df765363/39c6f609-8cf9-41db-a099-8959f1dcd941_wgs_gdc_realn.bam 100125629101 BAM hg38 61899a8a-9726-4e04-8e6b-0199df765363 storage1 @@ -3813,6 +3982,9 @@ C3N-03440.WGS.N.hg38 C3N-03440 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-03440.WGS.T.hg38 C3N-03440 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c0b860c-475e-4ad5-a1be-b8c56a295a5b/0ae21f34-235f-468e-99c1-0c845c5f03ed_wgs_gdc_realn.bam 233491420625 BAM hg38 2c0b860c-475e-4ad5-a1be-b8c56a295a5b storage1 C3N-03441.WGS.N.hg38 C3N-03441 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4a33c7d-e943-4289-bb44-762582ab397a/44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wgs_gdc_realn.bam 86480227712 BAM hg38 c4a33c7d-e943-4289-bb44-762582ab397a storage1 C3N-03441.WGS.T.hg38 C3N-03441 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cdd04a83-a463-4d47-b3fb-c271eea57054/32dd99c7-d21a-4c9d-903f-b3b270af7c81_wgs_gdc_realn.bam 85389508692 BAM hg38 cdd04a83-a463-4d47-b3fb-c271eea57054 storage1 +C3N-03446.RNA-Seq.R1.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a9e30f7-2202-4950-a643-61f2b2a1579d/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ NA 5a9e30f7-2202-4950-a643-61f2b2a1579d storage1 +C3N-03446.RNA-Seq.R2.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c66f195-9484-4900-9338-d02c9392ee59/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ NA 2c66f195-9484-4900-9338-d02c9392ee59 storage1 +C3N-03446.WXS.A C3N-03446 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af/CPT0404840014.WholeExome.RP-1303.bam 22291412082 BAM hg19 faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af storage1 C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3338a3d1-7dfb-47eb-a5f9-d95dce211972/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ NA 3338a3d1-7dfb-47eb-a5f9-d95dce211972 storage1 C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 storage1 C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38086ca8-0290-41a9-8ed4-b7db18d6022f/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM hg38 38086ca8-0290-41a9-8ed4-b7db18d6022f storage1 @@ -3825,7 +3997,12 @@ C3N-03449.WGS.N.hg38 C3N-03449 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-03449.WGS.T.hg38 C3N-03449 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd651894-4cf9-42a1-a907-d8a88f56d660/95344601-8d6d-4b58-b23c-2482f039b375_wgs_gdc_realn.bam 82964057648 BAM hg38 cd651894-4cf9-42a1-a907-d8a88f56d660 storage1 C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9cc9f57-6994-4632-99c3-b7b44deb2f42/42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM hg38 e9cc9f57-6994-4632-99c3-b7b44deb2f42 storage1 C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c86b4b-863d-404c-a883-76d1abac071c/95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM hg38 b2c86b4b-863d-404c-a883-76d1abac071c storage1 +C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81a63cde-b0d0-40d8-bd21-4ac99c45f504/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 storage1 +C3N-03450.RNA-Seq.R2.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d26762d9-9ed0-4411-85a1-8a6ecfa904a0/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ NA d26762d9-9ed0-4411-85a1-8a6ecfa904a0 storage1 +C3N-03450.WXS.A C3N-03450 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7498e01b-ef12-4dee-99a0-ab79f64e0119/CPT0405020008.WholeExome.RP-1303.bam 22154672056 BAM hg19 7498e01b-ef12-4dee-99a0-ab79f64e0119 storage1 +C3N-03452.RNA-Seq.R1.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0556e930-1904-4780-bf80-cdfba5c577b7/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ NA 0556e930-1904-4780-bf80-cdfba5c577b7 storage1 C3N-03452.RNA-Seq.R1.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcb5374d-d91f-4617-9a0b-33efb9238a3f/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ NA bcb5374d-d91f-4617-9a0b-33efb9238a3f storage1 +C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c582f341-273b-490f-9e51-725a98439835/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ NA c582f341-273b-490f-9e51-725a98439835 storage1 C3N-03452.RNA-Seq.R2.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b82dc44-54ea-4dcb-8e7c-5b0167c478f0/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ NA 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 storage1 C3N-03452.WGS.N.hg38 C3N-03452 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd7df227-d920-4949-8ab7-191412252216/3d82230b-c081-4c11-9e1f-aed013981520_wgs_gdc_realn.bam 68800975416 BAM hg38 cd7df227-d920-4949-8ab7-191412252216 storage1 C3N-03452.WGS.T.hg38 C3N-03452 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/285e6dc0-38fe-4ca5-a01c-d4ea82565353/c2109dc6-60b3-4bbe-b997-c781791a92c2_wgs_gdc_realn.bam 80891834156 BAM hg38 285e6dc0-38fe-4ca5-a01c-d4ea82565353 storage1 @@ -4072,7 +4249,9 @@ C3N-04100.WGS.T.hg38 C3N-04100 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c20addd-92b7-436e-b8c7-0e202439e2eb/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM hg38 7c20addd-92b7-436e-b8c7-0e202439e2eb storage1 C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/645e357e-7bdf-4136-812c-e02db7f7fab0/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM hg38 645e357e-7bdf-4136-812c-e02db7f7fab0 storage1 C3N-04113.RNA-Seq.R1.T C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f0d3283-518d-4cbe-ac56-7f4cff984a77/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ NA 9f0d3283-518d-4cbe-ac56-7f4cff984a77 storage1 +C3N-04113.RNA-Seq.R1.T.UNK_rk3EEVp C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69aa2a6b-6027-49f3-8e36-3103637b7cb1/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ NA 69aa2a6b-6027-49f3-8e36-3103637b7cb1 storage1 C3N-04113.RNA-Seq.R2.T C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R2_001.fastq.gz 3851534424 FASTQ NA 1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95 storage1 +C3N-04113.RNA-Seq.R2.T.UNK_rk3EEVp C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57e66976-7cfd-4dc7-960f-61b01cf53055/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ NA 57e66976-7cfd-4dc7-960f-61b01cf53055 storage1 C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88491985-2778-4634-b8ed-32a17626ad72/CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM hg19 88491985-2778-4634-b8ed-32a17626ad72 storage1 C3N-04113.WGS.N.hg38 C3N-04113 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a56868d-6456-4125-bd94-c89e0afdaeff/48f76814-e8a6-4689-ae08-37a3da4fbccf_wgs_gdc_realn.bam 91183903789 BAM hg38 8a56868d-6456-4125-bd94-c89e0afdaeff storage1 C3N-04113.WGS.T.hg38 C3N-04113 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4fdd133-7457-4a99-9621-b06aad5f7def/5ad1a3d2-831b-405d-b7d9-7e1728337e25_wgs_gdc_realn.bam 81872292228 BAM hg38 b4fdd133-7457-4a99-9621-b06aad5f7def storage1 @@ -4215,38 +4394,83 @@ C3N-05923.WGS.N.hg38 C3N-05923 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-05923.WGS.T.hg38 C3N-05923 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c0f4d7b-2228-4bb3-b955-0a61ba2b0705/c318d792-3d62-40bb-87bd-a98703d4c4b2_wgs_gdc_realn.bam 98152965775 BAM hg38 5c0f4d7b-2228-4bb3-b955-0a61ba2b0705 storage1 C3N-05929.WGS.N.hg38 C3N-05929 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/823dda5b-ff15-4a66-b28b-de0632850623/e3bf416b-3d08-4d1b-bec4-808e55c7788c_wgs_gdc_realn.bam 67323248287 BAM hg38 823dda5b-ff15-4a66-b28b-de0632850623 storage1 C3N-05929.WGS.T.hg38 C3N-05929 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5d518a3-fc69-4d7b-a719-0aad38abe43a/23fa88f9-9293-406b-bc21-2928ff12bc8b_wgs_gdc_realn.bam 68602850602 BAM hg38 c5d518a3-fc69-4d7b-a719-0aad38abe43a storage1 +C3N-05991.RNA-Seq.R1.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3fdfc5e-7311-4d86-ac76-83d954c22674/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ NA f3fdfc5e-7311-4d86-ac76-83d954c22674 storage1 +C3N-05991.RNA-Seq.R2.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f4a08f1-2571-471f-9eac-c774275f33f4/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ NA 8f4a08f1-2571-471f-9eac-c774275f33f4 storage1 C3N-05991.WGS.N.hg38 C3N-05991 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39243f84-1aee-49d4-8a00-32c396a850f3/099752ff-7fa5-4eb0-831a-09e5a211d5c3_wgs_gdc_realn.bam 71819625554 BAM hg38 39243f84-1aee-49d4-8a00-32c396a850f3 storage1 C3N-05991.WGS.T.hg38 C3N-05991 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/050d8938-f282-41da-94a0-94fefe053d4e/0ca72fda-2cdf-415a-b5a4-53470bf3af60_wgs_gdc_realn.bam 93840833290 BAM hg38 050d8938-f282-41da-94a0-94fefe053d4e storage1 +C464694.RNA-Seq.R1.T C464694 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e953a951-3a91-442e-ad44-8ebde2357ba1/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ NA e953a951-3a91-442e-ad44-8ebde2357ba1 storage1 +C464694.RNA-Seq.R2.T C464694 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfd4d083-3696-4f1a-9a7b-9613cb26d82d/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ NA dfd4d083-3696-4f1a-9a7b-9613cb26d82d storage1 C464694.WXS.N C464694 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae674995-a428-4617-a594-a46bd0a14690/7316UP-1220-1105273.WholeExome.RP-1303.bam 34171762075 BAM hg19 ae674995-a428-4617-a594-a46bd0a14690 storage1 +C464694.WXS.T.ADNA_7319b796 C464694 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b1eb9c9-e46d-4867-8ca9-7b90245fb6ac/7316UP-1220.WholeExome.RP-1303.bam 22942475909 BAM hg19 1b1eb9c9-e46d-4867-8ca9-7b90245fb6ac storage1 C464694.WXS.T C464694 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/680f0ed2-f4b3-4831-afb6-1758fa985db4/7316UP-1220-1105271.WholeExome.RP-1303.bam 23752991278 BAM hg19 680f0ed2-f4b3-4831-afb6-1758fa985db4 storage1 +C524103.RNA-Seq.R1.R C524103 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22a329b1-e16e-4f74-9776-f89111085a6e/210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ NA 22a329b1-e16e-4f74-9776-f89111085a6e storage1 +C524103.RNA-Seq.R1.T C524103 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afe00443-10de-4f18-b3cc-feda64a0ed5b/210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R1_001.fastq.gz 3191813062 FASTQ NA afe00443-10de-4f18-b3cc-feda64a0ed5b storage1 +C524103.RNA-Seq.R2.R C524103 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c2a8eae-a280-4bda-8053-bd1f73695d64/210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R2_001.fastq.gz 3112261192 FASTQ NA 1c2a8eae-a280-4bda-8053-bd1f73695d64 storage1 +C524103.RNA-Seq.R2.T C524103 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbbc3545-1937-4afe-9d74-28e653c9f64d/210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R2_001.fastq.gz 3472543146 FASTQ NA bbbc3545-1937-4afe-9d74-28e653c9f64d storage1 C524103.WGS.N C524103 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19ffaaad-e881-46e2-9a11-aecc70e586e9/7316UP-1302-1105274.WholeGenome.RP-2158.bam 48734475668 BAM hg19 19ffaaad-e881-46e2-9a11-aecc70e586e9 storage1 C524103.WGS.R C524103 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d25caa5c-4a24-45b8-8a75-10961ce9a232/7316UP-1352-1105258.WholeGenome.RP-2158.bam 42916365920 BAM hg19 d25caa5c-4a24-45b8-8a75-10961ce9a232 storage1 +C524103.WGS.T.ADNA_aee3de0f C524103 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd71f293-e7f0-4982-abd7-1a510b432306/7316UP-1302.WholeGenome.RP-2158.bam 55198852451 BAM hg19 fd71f293-e7f0-4982-abd7-1a510b432306 storage1 C524103.WXS.N C524103 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6eaa6ac2-44b3-4444-8c0d-a25e08e96978/7316UP-1302-1105274.WholeExome.RP-1303.bam 27656891961 BAM hg19 6eaa6ac2-44b3-4444-8c0d-a25e08e96978 storage1 +C524103.WXS.R.ADNA_d3942a4a C524103 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8cf5d4a7-4910-4ebf-867d-53de994c51e9/7316UP-1352.WholeExome.RP-1303.bam 31780811964 BAM hg19 8cf5d4a7-4910-4ebf-867d-53de994c51e9 storage1 C524103.WXS.R C524103 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a987daf4-a1a0-4054-a9f2-53ef20187d07/7316UP-1352-1105258.WholeExome.RP-1303.bam 28254822885 BAM hg19 a987daf4-a1a0-4054-a9f2-53ef20187d07 storage1 +C524103.WXS.T.ADNA_aee3de0f C524103 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9850345-daa3-4b02-af56-35927a4b6bab/7316UP-1302.WholeExome.RP-1303.bam 26476635087 BAM hg19 b9850345-daa3-4b02-af56-35927a4b6bab storage1 C524103.WXS.T C524103 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd8edce2-d841-4514-8c43-806379e3926f/7316UP-1302-1105204.WholeExome.RP-1303.bam 24692723272 BAM hg19 cd8edce2-d841-4514-8c43-806379e3926f storage1 +C621273.RNA-Seq.R1.R C621273 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2076f19-ae18-4b0f-90c0-009d307bac68/210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ NA d2076f19-ae18-4b0f-90c0-009d307bac68 storage1 +C621273.RNA-Seq.R2.R C621273 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/208f978b-38ac-480f-ba8b-10672e7acf9d/210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R2_001.fastq.gz 3751660538 FASTQ NA 208f978b-38ac-480f-ba8b-10672e7acf9d storage1 C621273.WXS.N C621273 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d3d6d7b-cca4-4002-837e-bad86e3a1a18/7316UP-1614-1105218.WholeExome.RP-1303.bam 20276203956 BAM hg19 5d3d6d7b-cca4-4002-837e-bad86e3a1a18 storage1 +C621273.WXS.R.ADNA_58508890 C621273 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5743f054-3db2-40c1-8933-1e6cf7f0f395/7316UP-1614.WholeExome.RP-1303.bam 22247999080 BAM hg19 5743f054-3db2-40c1-8933-1e6cf7f0f395 storage1 C621273.WXS.R C621273 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/682ffb5a-c41d-481c-890e-4eadbc23fb23/7316UP-1614-1105255.WholeExome.RP-1303.bam 25207962561 BAM hg19 682ffb5a-c41d-481c-890e-4eadbc23fb23 storage1 +C685110.RNA-Seq.R1.R C685110 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ff23a92-6ade-4e6b-9867-2c64eb28c3de/210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ NA 0ff23a92-6ade-4e6b-9867-2c64eb28c3de storage1 +C685110.RNA-Seq.R1.T C685110 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/519a2bd8-5dba-4d6a-9ca0-3cc6855d0045/210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R1_001.fastq.gz 4410505069 FASTQ NA 519a2bd8-5dba-4d6a-9ca0-3cc6855d0045 storage1 +C685110.RNA-Seq.R2.R C685110 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3652dfbb-4928-4636-9f9a-16069dc753ca/210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 3728372708 FASTQ NA 3652dfbb-4928-4636-9f9a-16069dc753ca storage1 +C685110.RNA-Seq.R2.T C685110 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/131ac7f3-1651-4192-83cb-6f9a97cbc981/210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R2_001.fastq.gz 4760327779 FASTQ NA 131ac7f3-1651-4192-83cb-6f9a97cbc981 storage1 C685110.WGS.N C685110 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbea3bb4-541a-4972-ac52-526e12b87ed2/7316UP-1640-1105277.WholeGenome.RP-2158.bam 46238585989 BAM hg19 fbea3bb4-541a-4972-ac52-526e12b87ed2 storage1 C685110.WGS.T C685110 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b081720c-6818-4299-916b-e2895fa2bb0e/7316UP-1640-1105266.WholeGenome.RP-2158.bam 52796552329 BAM hg19 b081720c-6818-4299-916b-e2895fa2bb0e storage1 C685110.WXS.N C685110 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5898748-110f-4c82-b9d6-1fcb24a9253c/7316UP-1640-1105277.WholeExome.RP-1303.bam 26076619092 BAM hg19 b5898748-110f-4c82-b9d6-1fcb24a9253c storage1 C685110.WXS.T C685110 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d0a809c-159d-4108-bd85-d202c3174aa9/7316UP-1640-1105266.WholeExome.RP-1303.bam 24916908755 BAM hg19 9d0a809c-159d-4108-bd85-d202c3174aa9 storage1 +C760878.RNA-Seq.R1.R C760878 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c47b1200-7652-4875-9681-8bdcd0de7ac0/210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ NA c47b1200-7652-4875-9681-8bdcd0de7ac0 storage1 +C760878.RNA-Seq.R1.T C760878 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86b299c6-96ce-4d99-b32b-76a4bcd9ee4c/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3428466031 FASTQ NA 86b299c6-96ce-4d99-b32b-76a4bcd9ee4c storage1 +C760878.RNA-Seq.R2.R C760878 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8645040-f99b-4031-88bb-231e179d10f0/210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 3977519333 FASTQ NA b8645040-f99b-4031-88bb-231e179d10f0 storage1 +C760878.RNA-Seq.R2.T C760878 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51ca63ce-fa0b-4327-b258-dc34abd61afc/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3707998190 FASTQ NA 51ca63ce-fa0b-4327-b258-dc34abd61afc storage1 +C760878.WGS.R.ADNA_8e047fa6 C760878 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86ad293f-7896-44da-b5ee-6136091f3ec1/7316UP-2726.WholeGenome.RP-2158.bam 51148367936 BAM hg19 86ad293f-7896-44da-b5ee-6136091f3ec1 storage1 +C760878.WGS.R C760878 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e87422a4-53c4-4a78-b552-e769f2560d10/7316UP-2726-1105268.WholeGenome.RP-2158.bam 43181516048 BAM hg19 e87422a4-53c4-4a78-b552-e769f2560d10 storage1 +C760878.WGS.T C760878 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1450f6a2-0de0-4974-81fd-c7d489cee875/7316UP-1843-1105254.WholeGenome.RP-2158.bam 64521345577 BAM hg19 1450f6a2-0de0-4974-81fd-c7d489cee875 storage1 C760878.WXS.N C760878 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4254f062-9dc7-489e-816a-23711fe63892/7316UP-1843-1105278.WholeExome.RP-1303.bam 25612276094 BAM hg19 4254f062-9dc7-489e-816a-23711fe63892 storage1 C760878.WXS.R C760878 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d2157f1-28d9-4e05-8f9d-a4424b09c858/7316UP-2726-1105268.WholeExome.RP-1303.bam 36649596530 BAM hg19 4d2157f1-28d9-4e05-8f9d-a4424b09c858 storage1 +C760878.WXS.T.ADNA_b1ddc47c C760878 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ccb3f38a-9134-4fc4-8a72-71f766a29c9d/7316UP-1843.WholeExome.RP-1303.bam 27174083246 BAM hg19 ccb3f38a-9134-4fc4-8a72-71f766a29c9d storage1 C760878.WXS.T C760878 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae2999a1-41b5-4226-b4c7-47045e937235/7316UP-1843-1105254.WholeExome.RP-1303.bam 24231661236 BAM hg19 ae2999a1-41b5-4226-b4c7-47045e937235 storage1 +C761370.RNA-Seq.R1.R C761370 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5888865b-8b1c-409f-849d-a969b1c7d9f1/210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ NA 5888865b-8b1c-409f-849d-a969b1c7d9f1 storage1 +C761370.RNA-Seq.R1.T C761370 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dca91fcb-3f8f-44de-965d-65e921a02fd5/210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R1_001.fastq.gz 3676602157 FASTQ NA dca91fcb-3f8f-44de-965d-65e921a02fd5 storage1 +C761370.RNA-Seq.R2.R C761370 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31f61c3a-670a-4635-b769-0a5f9dd7d8f2/210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R2_001.fastq.gz 4064864677 FASTQ NA 31f61c3a-670a-4635-b769-0a5f9dd7d8f2 storage1 +C761370.RNA-Seq.R2.T C761370 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0d9622c-b439-4941-94bb-29baf4448bed/210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R2_001.fastq.gz 4065964829 FASTQ NA f0d9622c-b439-4941-94bb-29baf4448bed storage1 C761370.WGS.N C761370 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d7f64b0-e6ca-4440-b1cb-408cc666bf7f/7316UP-1848-1105210.WholeGenome.RP-2158.bam 59941947727 BAM hg19 7d7f64b0-e6ca-4440-b1cb-408cc666bf7f storage1 +C761370.WGS.R.ADNA_4b43218c C761370 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/953902f7-b5d0-4995-b32c-744a5d69fd57/7316UP-2310.WholeGenome.RP-2158.bam 47338708829 BAM hg19 953902f7-b5d0-4995-b32c-744a5d69fd57 storage1 C761370.WGS.R.ADNA_d11a2397 C761370 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/541eba21-ad2a-4c21-ba54-688ccbd3ae91/7316UP-2310-1105240.WholeGenome.RP-2158.bam 50186159916 BAM hg19 541eba21-ad2a-4c21-ba54-688ccbd3ae91 storage1 +C761370.WGS.T.ADNA_260f1df4 C761370 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ff9d2fc-c389-4747-8648-f030c20b2c18/7316UP-1848.WholeGenome.RP-2158.bam 51644080684 BAM hg19 3ff9d2fc-c389-4747-8648-f030c20b2c18 storage1 C761370.WGS.T C761370 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7a46c7c-1369-4b72-b781-d5b05e0c5d67/7316UP-1848-1105252.WholeGenome.RP-2158.bam 52242174534 BAM hg19 b7a46c7c-1369-4b72-b781-d5b05e0c5d67 storage1 C761370.WXS.N C761370 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c32252a-765b-4a13-9be9-59adf0e39899/7316UP-1848-1105210.WholeExome.RP-1303.bam 25632609658 BAM hg19 8c32252a-765b-4a13-9be9-59adf0e39899 storage1 C761370.WXS.R.ADNA_d11a2397 C761370 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f90a34c-c645-448d-a51b-b45d398c728a/7316UP-2310-1105240.WholeExome.RP-1303.bam 24522804264 BAM hg19 2f90a34c-c645-448d-a51b-b45d398c728a storage1 C761370.WXS.R C761370 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f382759e-25f0-4a31-8f29-81ad8af13155/7316UP-2310-1105220.WholeExome.RP-1303.bam 22328978006 BAM hg19 f382759e-25f0-4a31-8f29-81ad8af13155 storage1 +C761370.WXS.T.ADNA_260f1df4 C761370 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dce99c6-b5a5-4ee0-8ee6-1e02ebf260a2/7316UP-1848.WholeExome.RP-1303.bam 31981438733 BAM hg19 6dce99c6-b5a5-4ee0-8ee6-1e02ebf260a2 storage1 C761370.WXS.T C761370 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/910901e4-d63f-41b2-b866-a602bc9a17d5/7316UP-1848-1105252.WholeExome.RP-1303.bam 25751689208 BAM hg19 910901e4-d63f-41b2-b866-a602bc9a17d5 storage1 +C827913.RNA-Seq.R1.R.ARNA_97c68cdd C827913 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d9d1934-c881-4f7f-868e-7ff2720591ce/210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ NA 7d9d1934-c881-4f7f-868e-7ff2720591ce storage1 +C827913.RNA-Seq.R2.R.ARNA_97c68cdd C827913 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81cfe120-ec7e-48d7-8468-c407c8fef01e/210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R2_001.fastq.gz 4505545231 FASTQ NA 81cfe120-ec7e-48d7-8468-c407c8fef01e storage1 C827913.WGS.N C827913 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b77d8996-e5d1-4181-8115-bdb50a062ab5/7316UP-2058-1105217.WholeGenome.RP-2158.bam 66390255486 BAM hg19 b77d8996-e5d1-4181-8115-bdb50a062ab5 storage1 C827913.WGS.R.ADNA_cd3f587f C827913 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49589c76-14e2-4739-a8ae-697ffa6e766d/7316UP-2333-1105221.WholeGenome.RP-2158.bam 50801966508 BAM hg19 49589c76-14e2-4739-a8ae-697ffa6e766d storage1 +C827913.WGS.T C827913 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64c68951-6295-4e75-8222-6a09e134fab5/7316UP-2058.WholeGenome.RP-2158.bam 57079724828 BAM hg19 64c68951-6295-4e75-8222-6a09e134fab5 storage1 C827913.WXS.N C827913 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7344d7a-80b3-4e8c-8244-471c07ad98e8/7316UP-2058-1105217.WholeExome.RP-1303.bam 27986255546 BAM hg19 f7344d7a-80b3-4e8c-8244-471c07ad98e8 storage1 C827913.WXS.R.ADNA_cd3f587f C827913 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2e74c07-30bd-46c6-8342-53602855857b/7316UP-2333-1105221.WholeExome.RP-1303.bam 25737528247 BAM hg19 e2e74c07-30bd-46c6-8342-53602855857b storage1 +C827913.WXS.R.ADNA_fa879b5e C827913 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06e0be11-40ec-4fd8-a9c5-bb169e9f21b1/7316UP-2527.WholeExome.RP-1303.bam 26171566550 BAM hg19 06e0be11-40ec-4fd8-a9c5-bb169e9f21b1 storage1 C827913.WXS.R C827913 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53703239-f5a5-411e-a5ce-e239614380ce/7316UP-2527-1105195.WholeExome.RP-1303.bam 24327000092 BAM hg19 53703239-f5a5-411e-a5ce-e239614380ce storage1 +C846363.RNA-Seq.R1.R C846363 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed500025-1eaf-4dde-8174-8803c579bb73/210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ NA ed500025-1eaf-4dde-8174-8803c579bb73 storage1 +C846363.RNA-Seq.R1.T C846363 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05606bfc-9000-4aa7-a4d1-694fc9ad6410/210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R1_001.fastq.gz 3798490040 FASTQ NA 05606bfc-9000-4aa7-a4d1-694fc9ad6410 storage1 +C846363.RNA-Seq.R2.R C846363 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3c87ab0-01ca-4b90-8c82-bd999d775e65/210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R2_001.fastq.gz 4319818318 FASTQ NA f3c87ab0-01ca-4b90-8c82-bd999d775e65 storage1 +C846363.RNA-Seq.R2.T C846363 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca/210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R2_001.fastq.gz 4184403140 FASTQ NA 347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca storage1 C846363.WGS.N C846363 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42975547-bcff-41fb-a890-cc0fbe1b30c9/7316UP-2100-1105216.WholeGenome.RP-2158.bam 45438721378 BAM hg19 42975547-bcff-41fb-a890-cc0fbe1b30c9 storage1 +C846363.WGS.R.ADNA_a3686b92 C846363 GBM WGS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7fc300f-d2ee-4eea-ab56-ddfb38150ba5/7316UP-2843.WholeGenome.RP-2158.bam 50765217165 BAM hg19 e7fc300f-d2ee-4eea-ab56-ddfb38150ba5 storage1 +C846363.WGS.T.ADNA_51dcc4a3 C846363 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a94539e9-b4fb-4d53-b3a5-9bbede2615ff/7316UP-2100.WholeGenome.RP-2158.bam 52394539987 BAM hg19 a94539e9-b4fb-4d53-b3a5-9bbede2615ff storage1 C846363.WGS.T C846363 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fdcdd36-e083-470f-a770-6a005da83f68/7316UP-2100-1105219.WholeGenome.RP-2158.bam 51804323984 BAM hg19 7fdcdd36-e083-470f-a770-6a005da83f68 storage1 C846363.WXS.N C846363 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd45cd04-f40e-405e-9bc2-1c42e8614cb1/7316UP-2100-1105216.WholeExome.RP-1303.bam 29207285501 BAM hg19 bd45cd04-f40e-405e-9bc2-1c42e8614cb1 storage1 +C846363.WXS.R.ADNA_a3686b92 C846363 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31af42c6-e11c-49c5-ab77-dd8dd863bdcc/7316UP-2843.WholeExome.RP-1303.bam 33943432437 BAM hg19 31af42c6-e11c-49c5-ab77-dd8dd863bdcc storage1 C846363.WXS.R C846363 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8590e83-d959-46b0-90aa-88bc644962fc/7316UP-2843-1105244.WholeExome.RP-1303.bam 23343495743 BAM hg19 b8590e83-d959-46b0-90aa-88bc644962fc storage1 C846363.WXS.T C846363 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57b43f3a-59cf-4057-9240-5c0965ff2f09/7316UP-2100-1105219.WholeExome.RP-1303.bam 15815239997 BAM hg19 57b43f3a-59cf-4057-9240-5c0965ff2f09 storage1