diff --git a/BamMap/storage1.BamMap.dat b/BamMap/storage1.BamMap.dat index 60e7a93..ca7515a 100644 --- a/BamMap/storage1.BamMap.dat +++ b/BamMap/storage1.BamMap.dat @@ -7,6 +7,8 @@ 11LU022.RNA-Seq.R2.T 11LU022 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0b0ceaf-55a7-4f73-839b-f9ff940eefdc/170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4493136826 FASTQ NA f0b0ceaf-55a7-4f73-839b-f9ff940eefdc storage1 11LU035.RNA-Seq.R1.T 11LU035 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4928a2b-40a7-4b3b-9215-6c18d7837f81/170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R1_001.fastq.gz 3301808869 FASTQ NA a4928a2b-40a7-4b3b-9215-6c18d7837f81 storage1 11LU035.RNA-Seq.R2.T 11LU035 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/927e1a09-f4ff-462b-a771-23f82da02ac1/170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R2_001.fastq.gz 3590554117 FASTQ NA 927e1a09-f4ff-462b-a771-23f82da02ac1 storage1 +C1230738.RNA-Seq.genomic.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d98c7a5-8279-40d9-9eb2-180fbe9a1393/58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.genomic.gdc_realn.bam 7653991217 BAM hg38 9d98c7a5-8279-40d9-9eb2-180fbe9a1393 storage1 +C1230738.RNA-Seq.genomic.T.hg38 C1230738 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b01e091-a339-4f18-b246-8998deb25060/2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.genomic.gdc_realn.bam 7822256033 BAM hg38 5b01e091-a339-4f18-b246-8998deb25060 storage1 C1230738.RNA-Seq.R1.R C1230738 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0573c53-73bc-4841-8fb6-e5ae0bf87740/210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ NA a0573c53-73bc-4841-8fb6-e5ae0bf87740 storage1 C1230738.RNA-Seq.R1.R C1230738 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0573c53-73bc-4841-8fb6-e5ae0bf87740/210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ NA a0573c53-73bc-4841-8fb6-e5ae0bf87740 storage1 C1230738.RNA-Seq.R1.T C1230738 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcedfbaa-90dd-4081-8704-a1cb34ec9275/210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R1_001.fastq.gz 3446087771 FASTQ NA bcedfbaa-90dd-4081-8704-a1cb34ec9275 storage1 @@ -31,6 +33,7 @@ C1230738.WXS.T.ADNA_eb44394c C1230738 GBM WXS tumor /storage1/fs1/m.wyczalkowski C1230738.WXS.T.ADNA_eb44394c.hg38 C1230738 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6c72dde-4426-4a98-9716-e4490b425df3/062a4cb7-1a73-4382-9f16-fdd891218a97_wxs_gdc_realn.bam 34561898412 BAM hg38 f6c72dde-4426-4a98-9716-e4490b425df3 storage1 C1230738.WXS.T C1230738 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dfde80e-ad35-4698-8708-833ed9db67b4/7316UP-2837-1105198.WholeExome.RP-1303.bam 25663974485 BAM hg19 1dfde80e-ad35-4698-8708-833ed9db67b4 storage1 C1230738.WXS.T.hg38 C1230738 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b06c50fe-383f-4cce-a9b0-9f70f118d5e0/aee72b24-81c3-47b5-856d-35ff22208f84_wxs_gdc_realn.bam 34971128893 BAM hg38 b06c50fe-383f-4cce-a9b0-9f70f118d5e0 storage1 +C1245129.RNA-Seq.genomic.T.hg38 C1245129 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dba372d2-a95c-4f22-b47a-eb7be11c2041/802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.genomic.gdc_realn.bam 8972721168 BAM hg38 dba372d2-a95c-4f22-b47a-eb7be11c2041 storage1 C1245129.RNA-Seq.R1.T C1245129 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9146c2dd-2d86-4d94-8fc4-b913e7ad8216/210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ NA 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 storage1 C1245129.RNA-Seq.R1.T C1245129 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9146c2dd-2d86-4d94-8fc4-b913e7ad8216/210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ NA 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 storage1 C1245129.RNA-Seq.R2.T C1245129 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f848e37-a739-4737-82e9-8773182905fa/210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4453892311 FASTQ NA 8f848e37-a739-4737-82e9-8773182905fa storage1 @@ -53,6 +56,8 @@ C1245129.WXS.T.ADNA_f4f0a623 C1245129 GBM WXS tumor /storage1/fs1/m.wyczalkowski C1245129.WXS.T.ADNA_f4f0a623.hg38 C1245129 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e05a653-da61-49f4-b2a7-b58f4781e760/5b739159-0dff-476e-932e-8198cb3c76e4_wxs_gdc_realn.bam 37402084587 BAM hg38 9e05a653-da61-49f4-b2a7-b58f4781e760 storage1 C1245129.WXS.T C1245129 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da97bd44-e486-4792-a8ec-76f714fdda25/7316UP-2923-1105251.WholeExome.RP-1303.bam 28736155132 BAM hg19 da97bd44-e486-4792-a8ec-76f714fdda25 storage1 C1245129.WXS.T.hg38 C1245129 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/923cea70-4973-4a54-ad99-151028fe7669/fb858b07-76dc-48b4-9096-adb0aed38c31_wxs_gdc_realn.bam 39273198570 BAM hg38 923cea70-4973-4a54-ad99-151028fe7669 storage1 +C204057.RNA-Seq.genomic.R.ARNA_4a62de3d.hg38 C204057 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f69044c-80a0-4124-bcfa-77b65f6d2147/69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.genomic.gdc_realn.bam 8538882691 BAM hg38 2f69044c-80a0-4124-bcfa-77b65f6d2147 storage1 +C204057.RNA-Seq.genomic.T.hg38 C204057 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/049ce0cf-c9c6-40e6-83e1-a52724f9426a/8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.genomic.gdc_realn.bam 9177202279 BAM hg38 049ce0cf-c9c6-40e6-83e1-a52724f9426a storage1 C204057.RNA-Seq.R1.R.ARNA_4a62de3d C204057 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e05465c-1a40-4992-b207-86b0751b0fed/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ NA 0e05465c-1a40-4992-b207-86b0751b0fed storage1 C204057.RNA-Seq.R1.R.ARNA_4a62de3d C204057 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e05465c-1a40-4992-b207-86b0751b0fed/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ NA 0e05465c-1a40-4992-b207-86b0751b0fed storage1 C204057.RNA-Seq.R1.T C204057 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37/210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 3528309965 FASTQ NA 64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37 storage1 @@ -83,6 +88,8 @@ C204057.WXS.T.ADNA_fb79d37d C204057 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C204057.WXS.T.ADNA_fb79d37d.hg38 C204057 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a93dee0-802a-47cc-90a5-37f686a9aebf/b1b62bc9-91c7-416b-92c8-35f6e197980a_wxs_gdc_realn.bam 36138400689 BAM hg38 6a93dee0-802a-47cc-90a5-37f686a9aebf storage1 C204057.WXS.T C204057 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c42d58e9-87d7-434d-86d9-a8365d4d6f91/7316UP-302-1105230.WholeExome.RP-1303.bam 21477886080 BAM hg19 c42d58e9-87d7-434d-86d9-a8365d4d6f91 storage1 C204057.WXS.T.hg38 C204057 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3e622c4-b84b-41a3-810a-97bf521ba9a9/73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wxs_gdc_realn.bam 29244557440 BAM hg38 a3e622c4-b84b-41a3-810a-97bf521ba9a9 storage1 +C207624.RNA-Seq.genomic.R.hg38 C207624 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9886fc0f-f118-47a7-a890-ae83f1754079/ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.genomic.gdc_realn.bam 8812826716 BAM hg38 9886fc0f-f118-47a7-a890-ae83f1754079 storage1 +C207624.RNA-Seq.genomic.T.hg38 C207624 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecf3e22c-87fa-4521-b475-9f51005d3c57/3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.genomic.gdc_realn.bam 8906386377 BAM hg38 ecf3e22c-87fa-4521-b475-9f51005d3c57 storage1 C207624.RNA-Seq.R1.R C207624 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f6a1a61-d46d-4ec0-9635-1501d10f1e92/210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ NA 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 storage1 C207624.RNA-Seq.R1.R C207624 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f6a1a61-d46d-4ec0-9635-1501d10f1e92/210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ NA 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 storage1 C207624.RNA-Seq.R1.T C207624 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/851d1582-47e3-4694-a4ce-54b4f0ca7865/210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 4159870756 FASTQ NA 851d1582-47e3-4694-a4ce-54b4f0ca7865 storage1 @@ -109,6 +116,7 @@ C207624.WXS.T.ADNA_8ab52100 C207624 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C207624.WXS.T.ADNA_8ab52100.hg38 C207624 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/370da836-9a04-4ad5-9b4f-11270f994e3c/fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wxs_gdc_realn.bam 31950446410 BAM hg38 370da836-9a04-4ad5-9b4f-11270f994e3c storage1 C207624.WXS.T C207624 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22146368-cc6c-4e49-9e71-1447474fd49a/7316UP-603-1105236.WholeExome.RP-1303.bam 21605528792 BAM hg19 22146368-cc6c-4e49-9e71-1447474fd49a storage1 C207624.WXS.T.hg38 C207624 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1252d351-fbb5-4716-b862-028f33399922/0af3abb3-d73f-47f4-9f8a-9ac41d230bca_wxs_gdc_realn.bam 29550234938 BAM hg38 1252d351-fbb5-4716-b862-028f33399922 storage1 +C208854.RNA-Seq.genomic.T.ARNA_af68ac6d.hg38 C208854 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dcbea11-1c0b-4af5-991c-61daa3d739d7/4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.genomic.gdc_realn.bam 8963599820 BAM hg38 4dcbea11-1c0b-4af5-991c-61daa3d739d7 storage1 C208854.RNA-Seq.R1.T.ARNA_af68ac6d C208854 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182139b3-ba15-4e62-b4c8-572f6aa6937c/210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ NA 182139b3-ba15-4e62-b4c8-572f6aa6937c storage1 C208854.RNA-Seq.R1.T.ARNA_af68ac6d C208854 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182139b3-ba15-4e62-b4c8-572f6aa6937c/210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ NA 182139b3-ba15-4e62-b4c8-572f6aa6937c storage1 C208854.RNA-Seq.R2.T.ARNA_af68ac6d C208854 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/977243c2-78c9-4409-ba05-1a11d89b52d6/210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R2_001.fastq.gz 3900126651 FASTQ NA 977243c2-78c9-4409-ba05-1a11d89b52d6 storage1 @@ -137,6 +145,7 @@ C208854.WXS.T.ADNA_93ae1041 C208854 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C208854.WXS.T.ADNA_93ae1041.hg38 C208854 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af9ba009-d30c-4629-98a5-80c96e605e94/9c504d59-e2a4-492c-ae3a-993e3f802cef_wxs_gdc_realn.bam 29608380930 BAM hg38 af9ba009-d30c-4629-98a5-80c96e605e94 storage1 C208854.WXS.T C208854 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b0a87eb-969e-45f3-bdda-a2cdf407801b/7316UP-613-1105226.WholeExome.RP-1303.bam 21215977915 BAM hg19 3b0a87eb-969e-45f3-bdda-a2cdf407801b storage1 C208854.WXS.T.hg38 C208854 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20773aad-0e5f-4b6d-8542-6981c9bf31a9/39d0b9dc-ead3-409f-87fc-484fee59f592_wxs_gdc_realn.bam 28593895334 BAM hg38 20773aad-0e5f-4b6d-8542-6981c9bf31a9 storage1 +C217710.RNA-Seq.genomic.T.hg38 C217710 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94288feb-dfc3-4639-98d5-effc4eb9920f/3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.genomic.gdc_realn.bam 7636439461 BAM hg38 94288feb-dfc3-4639-98d5-effc4eb9920f storage1 C217710.RNA-Seq.R1.T C217710 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b6817fd-a951-4eb0-bdac-687b93cf4b88/210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ NA 4b6817fd-a951-4eb0-bdac-687b93cf4b88 storage1 C217710.RNA-Seq.R1.T C217710 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b6817fd-a951-4eb0-bdac-687b93cf4b88/210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ NA 4b6817fd-a951-4eb0-bdac-687b93cf4b88 storage1 C217710.RNA-Seq.R2.T C217710 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4650c90e-4e22-48a5-942f-48a9cd2b854d/210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R2_001.fastq.gz 3908136926 FASTQ NA 4650c90e-4e22-48a5-942f-48a9cd2b854d storage1 @@ -155,6 +164,7 @@ C217710.WXS.T.ADNA_e91fb26d C217710 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C217710.WXS.T.ADNA_e91fb26d.hg38 C217710 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bbd9c83-206a-4547-93fb-1dbc329c4128/cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wxs_gdc_realn.bam 60153137014 BAM hg38 8bbd9c83-206a-4547-93fb-1dbc329c4128 storage1 C217710.WXS.T C217710 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87b51d25-9339-49ab-920f-ab8cecd367e5/7316UP-19-1105245.WholeExome.RP-1303.bam 22589791817 BAM hg19 87b51d25-9339-49ab-920f-ab8cecd367e5 storage1 C217710.WXS.T.hg38 C217710 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d5ad431-811e-436c-8f11-dc1badb61be6/49aea928-c7da-432e-aa39-ec92de5d9f00_wxs_gdc_realn.bam 30329595462 BAM hg38 1d5ad431-811e-436c-8f11-dc1badb61be6 storage1 +C219555.RNA-Seq.genomic.R.hg38 C219555 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/247c5814-1fd5-4768-b249-75e4f069dbfd/c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.genomic.gdc_realn.bam 10356729173 BAM hg38 247c5814-1fd5-4768-b249-75e4f069dbfd storage1 C219555.RNA-Seq.R1.R C219555 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddde0a66-c5c5-4aa0-8021-f4c5039e1adf/210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ NA ddde0a66-c5c5-4aa0-8021-f4c5039e1adf storage1 C219555.RNA-Seq.R1.R C219555 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddde0a66-c5c5-4aa0-8021-f4c5039e1adf/210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ NA ddde0a66-c5c5-4aa0-8021-f4c5039e1adf storage1 C219555.RNA-Seq.R2.R C219555 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1871abee-0aa8-4766-b001-d9c3b0c8ff27/210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R2_001.fastq.gz 5060489472 FASTQ NA 1871abee-0aa8-4766-b001-d9c3b0c8ff27 storage1 @@ -175,6 +185,7 @@ C219555.WXS.R C219555 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Activ C219555.WXS.R.hg38 C219555 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e12410da-6165-46b0-bde6-6da7de7906f7/2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wxs_gdc_realn.bam 35015525938 BAM hg38 e12410da-6165-46b0-bde6-6da7de7906f7 storage1 C219555.WXS.T C219555 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/869a1730-a19a-4fc9-98e7-077f14452b5b/7316UP-35-1105259.WholeExome.RP-1303.bam 23960204308 BAM hg19 869a1730-a19a-4fc9-98e7-077f14452b5b storage1 C219555.WXS.T.hg38 C219555 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d6f28a8-c2fe-4259-b1ed-b59d4b65d934/b8cc75d6-b8c2-4e04-8808-9c99797b2115_wxs_gdc_realn.bam 33230013329 BAM hg38 1d6f28a8-c2fe-4259-b1ed-b59d4b65d934 storage1 +C223491.RNA-Seq.genomic.R.hg38 C223491 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9df33640-601a-45cc-8889-20e6a483224f/76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.genomic.gdc_realn.bam 11405701389 BAM hg38 9df33640-601a-45cc-8889-20e6a483224f storage1 C223491.RNA-Seq.R1.R C223491 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c436956-9492-4126-8ed6-160d0909e49e/210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ NA 1c436956-9492-4126-8ed6-160d0909e49e storage1 C223491.RNA-Seq.R1.R C223491 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c436956-9492-4126-8ed6-160d0909e49e/210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ NA 1c436956-9492-4126-8ed6-160d0909e49e storage1 C223491.RNA-Seq.R2.R C223491 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a46bf346-0896-46e7-a3c2-ca63e1e137a0/210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R2_001.fastq.gz 4283501940 FASTQ NA a46bf346-0896-46e7-a3c2-ca63e1e137a0 storage1 @@ -191,6 +202,8 @@ C223491.WXS.R.ADNA_41e87f66 C223491 GBM WXS recurrent_tumor /storage1/fs1/m.wycz C223491.WXS.R.ADNA_41e87f66.hg38 C223491 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/beb5a8d2-4ca2-4beb-90d3-68bff12b16ce/522b9088-599b-4b9f-8508-bf4e7c39e09d_wxs_gdc_realn.bam 41630615778 BAM hg38 beb5a8d2-4ca2-4beb-90d3-68bff12b16ce storage1 C223491.WXS.R C223491 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd8663d4-c762-4db2-b8a0-031382dc3666/7316UP-483-1105191.WholeExome.RP-1303.bam 15164145344 BAM hg19 fd8663d4-c762-4db2-b8a0-031382dc3666 storage1 C223491.WXS.R.hg38 C223491 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48495898-8b43-46dc-8dd4-da3253772b14/d235c25d-bb95-4dc9-a1b3-128f850fd737_wxs_gdc_realn.bam 20687623019 BAM hg38 48495898-8b43-46dc-8dd4-da3253772b14 storage1 +C224106.RNA-Seq.genomic.R.hg38 C224106 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ae0fcc0-fe9d-4c71-a3e8-b8062afe1710/903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.genomic.gdc_realn.bam 11315891908 BAM hg38 2ae0fcc0-fe9d-4c71-a3e8-b8062afe1710 storage1 +C224106.RNA-Seq.genomic.T.hg38 C224106 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d99f2d51-7f71-4145-bf9a-bd028efe6e6b/bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.genomic.gdc_realn.bam 9924215225 BAM hg38 d99f2d51-7f71-4145-bf9a-bd028efe6e6b storage1 C224106.RNA-Seq.R1.R C224106 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e/210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ NA c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e storage1 C224106.RNA-Seq.R1.R C224106 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e/210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ NA c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e storage1 C224106.RNA-Seq.R1.T C224106 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/286d824a-e222-4b66-a50f-83ba2dfb89f4/210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R1_001.fastq.gz 4345500965 FASTQ NA 286d824a-e222-4b66-a50f-83ba2dfb89f4 storage1 @@ -219,6 +232,8 @@ C224106.WXS.T.ADNA_4208c7cd C224106 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C224106.WXS.T.ADNA_4208c7cd.hg38 C224106 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68b960fe-389d-45f1-a5b1-4500a8670c48/03758b31-f5e1-4bea-8001-a5147945dafa_wxs_gdc_realn.bam 35883300355 BAM hg38 68b960fe-389d-45f1-a5b1-4500a8670c48 storage1 C224106.WXS.T C224106 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bf37e1a-b64b-422e-9a8e-615a7be715d1/7316UP-287-1105192.WholeExome.RP-1303.bam 19953957842 BAM hg19 3bf37e1a-b64b-422e-9a8e-615a7be715d1 storage1 C224106.WXS.T.hg38 C224106 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3345bb07-d0be-4306-be6e-ea632f8c5fc8/a5fb9d82-568c-4f92-9d20-ff80d6bce284_wxs_gdc_realn.bam 27371401350 BAM hg38 3345bb07-d0be-4306-be6e-ea632f8c5fc8 storage1 +C224967.RNA-Seq.genomic.R.hg38 C224967 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acbd502e-6250-448e-86a7-fdb7b3eb3ce7/c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.genomic.gdc_realn.bam 10839337672 BAM hg38 acbd502e-6250-448e-86a7-fdb7b3eb3ce7 storage1 +C224967.RNA-Seq.genomic.T.hg38 C224967 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc2459b2-3b27-4621-b7f6-523d85a24427/843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.genomic.gdc_realn.bam 10096056490 BAM hg38 fc2459b2-3b27-4621-b7f6-523d85a24427 storage1 C224967.RNA-Seq.R1.R C224967 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ NA 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c storage1 C224967.RNA-Seq.R1.R C224967 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ NA 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c storage1 C224967.RNA-Seq.R1.T C224967 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10469910-29ac-4d88-bc8c-42a9bd4cedf1/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R1_001.fastq.gz 3216445001 FASTQ NA 10469910-29ac-4d88-bc8c-42a9bd4cedf1 storage1 @@ -241,6 +256,8 @@ C224967.WXS.T.ADNA_ef1b8e33 C224967 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C224967.WXS.T.ADNA_ef1b8e33.hg38 C224967 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/406c1599-e9aa-41f3-95d8-3126dece3c82/75069e02-ca1b-4e5d-bd9a-7e0996430dec_wxs_gdc_realn.bam 109072739431 BAM hg38 406c1599-e9aa-41f3-95d8-3126dece3c82 storage1 C224967.WXS.T C224967 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4099c82e-80c2-44c2-935b-44c9ded7faae/7316UP-743-1105199.WholeExome.RP-1303.bam 25027597697 BAM hg19 4099c82e-80c2-44c2-935b-44c9ded7faae storage1 C224967.WXS.T.hg38 C224967 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/63f77087-cd4f-4b87-a777-57a55abe245f/aac08359-e9fe-4cf7-b5e1-12cc6dfa6cf4_wxs_gdc_realn.bam 33904639770 BAM hg38 63f77087-cd4f-4b87-a777-57a55abe245f storage1 +C229764.RNA-Seq.genomic.R.hg38 C229764 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84b8535b-d50c-4972-9a69-834b0c496868/5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.genomic.gdc_realn.bam 6839473839 BAM hg38 84b8535b-d50c-4972-9a69-834b0c496868 storage1 +C229764.RNA-Seq.genomic.T.hg38 C229764 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10e482d1-5af7-4a99-bce4-eb0341dfa3ed/27c9188b-2840-4286-b197-cecc854b5899.rna_seq.genomic.gdc_realn.bam 8876149296 BAM hg38 10e482d1-5af7-4a99-bce4-eb0341dfa3ed storage1 C229764.RNA-Seq.R1.R C229764 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c530183b-3935-4d0a-a887-aa028b77f774/210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ NA c530183b-3935-4d0a-a887-aa028b77f774 storage1 C229764.RNA-Seq.R1.R C229764 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c530183b-3935-4d0a-a887-aa028b77f774/210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ NA c530183b-3935-4d0a-a887-aa028b77f774 storage1 C229764.RNA-Seq.R1.T C229764 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/32c3d5c1-3381-4ec0-b60d-414d6275cbf0/210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R1_001.fastq.gz 4111525485 FASTQ NA 32c3d5c1-3381-4ec0-b60d-414d6275cbf0 storage1 @@ -265,6 +282,8 @@ C229764.WXS.R C229764 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Activ C229764.WXS.R.hg38 C229764 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4845ff0-b4f1-4eaf-8157-904e149293a7/bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wxs_gdc_realn.bam 44015856796 BAM hg38 b4845ff0-b4f1-4eaf-8157-904e149293a7 storage1 C229764.WXS.T C229764 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0483328a-3997-42e0-b9a3-b05d5c0b3caa/7316UP-109-1105242.WholeExome.RP-1303.bam 29536235729 BAM hg19 0483328a-3997-42e0-b9a3-b05d5c0b3caa storage1 C229764.WXS.T.hg38 C229764 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0858e1ec-6d27-4654-9a9d-ac8d08173e1a/ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wxs_gdc_realn.bam 40270433118 BAM hg38 0858e1ec-6d27-4654-9a9d-ac8d08173e1a storage1 +C231855.RNA-Seq.genomic.R.hg38 C231855 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6bcf1557-1dfe-44cb-a005-536aadf106be/fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.genomic.gdc_realn.bam 8833797711 BAM hg38 6bcf1557-1dfe-44cb-a005-536aadf106be storage1 +C231855.RNA-Seq.genomic.T.hg38 C231855 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d78dc8a2-5618-4c76-93c8-05c1ff4a893a/eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.genomic.gdc_realn.bam 10544458404 BAM hg38 d78dc8a2-5618-4c76-93c8-05c1ff4a893a storage1 C231855.RNA-Seq.R1.R C231855 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b018459-1fb0-458c-8d4b-40d6ace7089e/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ NA 5b018459-1fb0-458c-8d4b-40d6ace7089e storage1 C231855.RNA-Seq.R1.R C231855 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b018459-1fb0-458c-8d4b-40d6ace7089e/210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ NA 5b018459-1fb0-458c-8d4b-40d6ace7089e storage1 C231855.RNA-Seq.R1.T C231855 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a569c62-2dfe-4109-803d-dab5026bfec2/210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R1_001.fastq.gz 4752824534 FASTQ NA 6a569c62-2dfe-4109-803d-dab5026bfec2 storage1 @@ -285,6 +304,9 @@ C231855.WXS.T.ADNA_40a9c1b9 C231855 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C231855.WXS.T.ADNA_40a9c1b9.hg38 C231855 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aea7e706-e796-4b1f-bb99-40a333b400e9/8b5d164f-881e-476b-ad10-84e8b23a9601_wxs_gdc_realn.bam 30332109330 BAM hg38 aea7e706-e796-4b1f-bb99-40a333b400e9 storage1 C231855.WXS.T C231855 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/379396e7-9602-4738-a39c-05ba14b6b2d8/7316UP-160-1105247.WholeExome.RP-1303.bam 23334674687 BAM hg19 379396e7-9602-4738-a39c-05ba14b6b2d8 storage1 C231855.WXS.T.hg38 C231855 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f12a807d-d1e9-4c32-a4ac-798ff0359c82/ca322924-b07a-4fbb-8634-78e26e197671_wxs_gdc_realn.bam 32063571055 BAM hg38 f12a807d-d1e9-4c32-a4ac-798ff0359c82 storage1 +C234192.RNA-Seq.genomic.R.ARNA_35bb8e11.hg38 C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c57c71d3-45fc-4889-a770-d67120fd12d2/289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.genomic.gdc_realn.bam 10506958714 BAM hg38 c57c71d3-45fc-4889-a770-d67120fd12d2 storage1 +C234192.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/158def60-2226-4585-a3e7-e68c551de793/5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.genomic.gdc_realn.bam 8269927080 BAM hg38 158def60-2226-4585-a3e7-e68c551de793 storage1 +C234192.RNA-Seq.genomic.T.hg38 C234192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0acda018-6eab-45bb-ac39-40f65cecdcd7/87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.genomic.gdc_realn.bam 9553842168 BAM hg38 0acda018-6eab-45bb-ac39-40f65cecdcd7 storage1 C234192.RNA-Seq.R1.R.ARNA_35bb8e11 C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d500c68-fbb2-4d68-b501-7cca903b17cf/210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ NA 7d500c68-fbb2-4d68-b501-7cca903b17cf storage1 C234192.RNA-Seq.R1.R.ARNA_35bb8e11 C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d500c68-fbb2-4d68-b501-7cca903b17cf/210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ NA 7d500c68-fbb2-4d68-b501-7cca903b17cf storage1 C234192.RNA-Seq.R1.R C234192 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c50ba18b-ea56-4579-a48e-bc82936d96c8/210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R1_001.fastq.gz 3736027921 FASTQ NA c50ba18b-ea56-4579-a48e-bc82936d96c8 storage1 @@ -315,6 +337,7 @@ C234192.WXS.T.ADNA_a92ddca1 C234192 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C234192.WXS.T.ADNA_a92ddca1.hg38 C234192 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/391bf1c9-43e5-4e52-b602-a8014c059dbc/4eae5599-7c20-444f-8253-fc4a0195d96f_wxs_gdc_realn.bam 31626617554 BAM hg38 391bf1c9-43e5-4e52-b602-a8014c059dbc storage1 C234192.WXS.T C234192 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6c516d7-ef12-420e-8bf5-bde06419732f/7316UP-181-1105194.WholeExome.RP-1303.bam 25971653894 BAM hg19 b6c516d7-ef12-420e-8bf5-bde06419732f storage1 C234192.WXS.T.hg38 C234192 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00d428d0-e8fc-4662-a0fa-cabc09e83c20/d774c07e-df68-4037-983e-1b21d267226b_wxs_gdc_realn.bam 35443786397 BAM hg38 00d428d0-e8fc-4662-a0fa-cabc09e83c20 storage1 +C2415597.RNA-Seq.genomic.T.hg38 C2415597 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81dcb229-7581-4325-a20f-08e0b18337d8/38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.genomic.gdc_realn.bam 9463100178 BAM hg38 81dcb229-7581-4325-a20f-08e0b18337d8 storage1 C2415597.RNA-Seq.R1.T C2415597 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65a4c75a-7f0b-440c-92db-a907010614d1/210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ NA 65a4c75a-7f0b-440c-92db-a907010614d1 storage1 C2415597.RNA-Seq.R1.T C2415597 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65a4c75a-7f0b-440c-92db-a907010614d1/210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ NA 65a4c75a-7f0b-440c-92db-a907010614d1 storage1 C2415597.RNA-Seq.R2.T C2415597 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb7aa747-60b6-4342-aaa4-f076f360b67d/210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R2_001.fastq.gz 4342338020 FASTQ NA bb7aa747-60b6-4342-aaa4-f076f360b67d storage1 @@ -335,6 +358,8 @@ C2415597.WXS.R C2415597 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Act C2415597.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40466bdf-bea3-4d9a-92de-729418cd7304/a2b4abb1-839e-4763-aa82-c754f118b220_wxs_gdc_realn.bam 33287969940 BAM hg38 40466bdf-bea3-4d9a-92de-729418cd7304 storage1 C2415597.WXS.T C2415597 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0abd93c6-12d9-44b5-8d34-77397cbce77f/7316UP-3213-1105267.WholeExome.RP-1303.bam 22767710482 BAM hg19 0abd93c6-12d9-44b5-8d34-77397cbce77f storage1 C2415597.WXS.T.hg38 C2415597 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7016be0-b5fd-4b35-bfcb-b9f68116a669/bc166e0c-63e2-409c-a09f-7100fc4d0399_wxs_gdc_realn.bam 30930941832 BAM hg38 d7016be0-b5fd-4b35-bfcb-b9f68116a669 storage1 +C243048.RNA-Seq.genomic.R.hg38 C243048 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d6b8c8a-4796-4ae3-a41a-8c406f5f01dd/dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.genomic.gdc_realn.bam 8787059735 BAM hg38 2d6b8c8a-4796-4ae3-a41a-8c406f5f01dd storage1 +C243048.RNA-Seq.genomic.T.hg38 C243048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/822ba9f2-f945-486f-b42a-3e644ed48a6f/ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.genomic.gdc_realn.bam 9759936611 BAM hg38 822ba9f2-f945-486f-b42a-3e644ed48a6f storage1 C243048.RNA-Seq.R1.R C243048 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/363afde2-4960-4b58-9fb5-783487373231/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ NA 363afde2-4960-4b58-9fb5-783487373231 storage1 C243048.RNA-Seq.R1.R C243048 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/363afde2-4960-4b58-9fb5-783487373231/210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ NA 363afde2-4960-4b58-9fb5-783487373231 storage1 C243048.RNA-Seq.R1.T C243048 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/098febb3-ede7-4533-b9f9-043c8d664e30/210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R1_001.fastq.gz 4481092171 FASTQ NA 098febb3-ede7-4533-b9f9-043c8d664e30 storage1 @@ -359,6 +384,8 @@ C243048.WXS.T.ADNA_94a7b89d C243048 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C243048.WXS.T.ADNA_94a7b89d.hg38 C243048 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba5c13e9-a560-4436-90f2-011d77ee7531/e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wxs_gdc_realn.bam 31637926754 BAM hg38 ba5c13e9-a560-4436-90f2-011d77ee7531 storage1 C243048.WXS.T C243048 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/13cd0048-3145-4c19-be89-24bde2ca1da6/7316UP-213-1105246.WholeExome.RP-1303.bam 29270789494 BAM hg19 13cd0048-3145-4c19-be89-24bde2ca1da6 storage1 C243048.WXS.T.hg38 C243048 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bdfe531-ae92-49f4-87c0-02ee2ad09779/6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wxs_gdc_realn.bam 39637473887 BAM hg38 8bdfe531-ae92-49f4-87c0-02ee2ad09779 storage1 +C243909.RNA-Seq.genomic.R.hg38 C243909 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2561c9e4-45b1-4167-90ff-893804ca1fc4/272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.genomic.gdc_realn.bam 9096132246 BAM hg38 2561c9e4-45b1-4167-90ff-893804ca1fc4 storage1 +C243909.RNA-Seq.genomic.T.hg38 C243909 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a973f0e9-1f4b-480d-8417-4a6d90b8ebd3/e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.genomic.gdc_realn.bam 8596757364 BAM hg38 a973f0e9-1f4b-480d-8417-4a6d90b8ebd3 storage1 C243909.RNA-Seq.R1.R C243909 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d/210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ NA b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d storage1 C243909.RNA-Seq.R1.R C243909 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d/210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ NA b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d storage1 C243909.RNA-Seq.R1.T C243909 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bfdab73-70f3-4d2b-8e02-8080bd13b2e9/210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R1_001.fastq.gz 3996224097 FASTQ NA 8bfdab73-70f3-4d2b-8e02-8080bd13b2e9 storage1 @@ -383,6 +410,8 @@ C243909.WXS.T.ADNA_74725183 C243909 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C243909.WXS.T.ADNA_74725183.hg38 C243909 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fff94d78-afc1-4c90-9e46-7d90e2f05b5f/d013c55d-d3bd-488f-95cd-6c6e9228d817_wxs_gdc_realn.bam 37111751144 BAM hg38 fff94d78-afc1-4c90-9e46-7d90e2f05b5f storage1 C243909.WXS.T C243909 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96c59667-865e-40c1-8dd9-cd08e128daeb/7316UP-219-1105241.WholeExome.RP-1303.bam 22953350618 BAM hg19 96c59667-865e-40c1-8dd9-cd08e128daeb storage1 C243909.WXS.T.hg38 C243909 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7bd5850-d12c-44e5-ab30-20b39a264488/87b93eca-6649-48fe-8311-56853e65a862_wxs_gdc_realn.bam 31562155891 BAM hg38 c7bd5850-d12c-44e5-ab30-20b39a264488 storage1 +C247230.RNA-Seq.genomic.R.hg38 C247230 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e81b543-8da5-402d-bcc7-15ad86bcbf80/340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.genomic.gdc_realn.bam 8685326882 BAM hg38 2e81b543-8da5-402d-bcc7-15ad86bcbf80 storage1 +C247230.RNA-Seq.genomic.T.hg38 C247230 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5479baec-5c9c-4c5d-b85c-23e24ddef741/44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.genomic.gdc_realn.bam 8834657872 BAM hg38 5479baec-5c9c-4c5d-b85c-23e24ddef741 storage1 C247230.RNA-Seq.R1.R C247230 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/982111f4-0501-4138-a072-3243d58dd670/210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ NA 982111f4-0501-4138-a072-3243d58dd670 storage1 C247230.RNA-Seq.R1.R C247230 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/982111f4-0501-4138-a072-3243d58dd670/210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ NA 982111f4-0501-4138-a072-3243d58dd670 storage1 C247230.RNA-Seq.R1.T C247230 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c52701e-f9d9-4fbf-9530-2d8e420b5078/210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R1_001.fastq.gz 3837839898 FASTQ NA 4c52701e-f9d9-4fbf-9530-2d8e420b5078 storage1 @@ -407,6 +436,8 @@ C247230.WXS.T.ADNA_0aa190bd C247230 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C247230.WXS.T.ADNA_0aa190bd.hg38 C247230 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f79420a5-f8b3-4853-85e4-8103a56fc3f9/44d33820-4b25-4059-b10b-6f7b9038ed39_wxs_gdc_realn.bam 37400388874 BAM hg38 f79420a5-f8b3-4853-85e4-8103a56fc3f9 storage1 C247230.WXS.T C247230 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dcba1f63-8aa5-4a23-8eae-e1c3b13a7335/7316UP-8-1105243.WholeExome.RP-1303.bam 27341900884 BAM hg19 dcba1f63-8aa5-4a23-8eae-e1c3b13a7335 storage1 C247230.WXS.T.hg38 C247230 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94b2e77b-dacb-475b-bbef-febab3c064c2/eafce93e-0fd9-44bb-942d-7820b6f68744_wxs_gdc_realn.bam 37210403279 BAM hg38 94b2e77b-dacb-475b-bbef-febab3c064c2 storage1 +C259161.RNA-Seq.genomic.R.hg38 C259161 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0abe08b-c62c-4134-aa63-cfb21cfde381/56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.genomic.gdc_realn.bam 9556689537 BAM hg38 e0abe08b-c62c-4134-aa63-cfb21cfde381 storage1 +C259161.RNA-Seq.genomic.T.hg38 C259161 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0185bf58-ee9b-44d5-89d1-a40b4cebf3a4/96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.genomic.gdc_realn.bam 9477389368 BAM hg38 0185bf58-ee9b-44d5-89d1-a40b4cebf3a4 storage1 C259161.RNA-Seq.R1.R C259161 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04492d6a-768d-408d-8491-a3421e3d7fb1/210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ NA 04492d6a-768d-408d-8491-a3421e3d7fb1 storage1 C259161.RNA-Seq.R1.R C259161 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04492d6a-768d-408d-8491-a3421e3d7fb1/210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ NA 04492d6a-768d-408d-8491-a3421e3d7fb1 storage1 C259161.RNA-Seq.R1.T C259161 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99e448a9-f393-41a2-9c6a-46ed6a453a25/210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R1_001.fastq.gz 4076185110 FASTQ NA 99e448a9-f393-41a2-9c6a-46ed6a453a25 storage1 @@ -430,6 +461,7 @@ C259161.WXS.T.ADNA_5c7e3295 C259161 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C259161.WXS.T.ADNA_5c7e3295.hg38 C259161 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/942805cd-2142-4c93-b3d2-a8980b14e829/71aff02e-d6dd-4292-8627-d33c7d95fea5_wxs_gdc_realn.bam 29087943502 BAM hg38 942805cd-2142-4c93-b3d2-a8980b14e829 storage1 C259161.WXS.T C259161 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f16c354e-4c82-4248-a6d1-2d52ed2aaf13/7316UP-293-1105250.WholeExome.RP-1303.bam 29802893632 BAM hg19 f16c354e-4c82-4248-a6d1-2d52ed2aaf13 storage1 C259161.WXS.T.hg38 C259161 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fe9a9b8-b5c4-4e72-8fb7-71cac06dd773/c72c1846-16af-4899-a429-9f5b7c954a58_wxs_gdc_realn.bam 40738250391 BAM hg38 2fe9a9b8-b5c4-4e72-8fb7-71cac06dd773 storage1 +C266664.RNA-Seq.genomic.T.hg38 C266664 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d58ecb4b-0513-41e1-9875-924f338eb487/9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.genomic.gdc_realn.bam 8262571082 BAM hg38 d58ecb4b-0513-41e1-9875-924f338eb487 storage1 C266664.RNA-Seq.R1.T C266664 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d47ac642-9204-45da-a0b5-ea6a80d65139/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ NA d47ac642-9204-45da-a0b5-ea6a80d65139 storage1 C266664.RNA-Seq.R1.T C266664 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d47ac642-9204-45da-a0b5-ea6a80d65139/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ NA d47ac642-9204-45da-a0b5-ea6a80d65139 storage1 C266664.RNA-Seq.R2.T C266664 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1671b3e1-6b22-4326-bf41-49312e3c6829/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R2_001.fastq.gz 4195942259 FASTQ NA 1671b3e1-6b22-4326-bf41-49312e3c6829 storage1 @@ -452,6 +484,8 @@ C266664.WXS.T.ADNA_5dbc58a2 C266664 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C266664.WXS.T.ADNA_5dbc58a2.hg38 C266664 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad1b5b7b-5c70-44e1-aa5c-f1e397fbb55a/670c02b3-383c-4ca4-9a0d-2fc479296d0c_wxs_gdc_realn.bam 45112910713 BAM hg38 ad1b5b7b-5c70-44e1-aa5c-f1e397fbb55a storage1 C266664.WXS.T C266664 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b7af748-7592-49d9-957e-44e63c0f6e26/7316UP-393-1105269.WholeExome.RP-1303.bam 31877144001 BAM hg19 0b7af748-7592-49d9-957e-44e63c0f6e26 storage1 C266664.WXS.T.hg38 C266664 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fa81b59-b344-463c-91a7-3bf91763635f/3af09701-86aa-4741-aa59-9aed8b02f2bf_wxs_gdc_realn.bam 43507973790 BAM hg38 7fa81b59-b344-463c-91a7-3bf91763635f storage1 +C283515.RNA-Seq.genomic.R.hg38 C283515 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f87bca4-8222-4279-85de-17b7fc809348/fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.genomic.gdc_realn.bam 8996805447 BAM hg38 1f87bca4-8222-4279-85de-17b7fc809348 storage1 +C283515.RNA-Seq.genomic.T.hg38 C283515 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c5a7f1f-7309-4643-b673-ae16e1e917f0/0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.genomic.gdc_realn.bam 9269250037 BAM hg38 7c5a7f1f-7309-4643-b673-ae16e1e917f0 storage1 C283515.RNA-Seq.R1.R C283515 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/543f557f-1beb-4456-a0fd-cec8d084ff20/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ NA 543f557f-1beb-4456-a0fd-cec8d084ff20 storage1 C283515.RNA-Seq.R1.R C283515 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/543f557f-1beb-4456-a0fd-cec8d084ff20/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ NA 543f557f-1beb-4456-a0fd-cec8d084ff20 storage1 C283515.RNA-Seq.R1.T C283515 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/788421a7-7d30-4bc6-b77a-688289cf5778/210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R1_001.fastq.gz 4256039693 FASTQ NA 788421a7-7d30-4bc6-b77a-688289cf5778 storage1 @@ -478,6 +512,8 @@ C283515.WXS.T.ADNA_16970afa C283515 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C283515.WXS.T.ADNA_16970afa.hg38 C283515 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb59bee7-446d-4669-bd78-6234196d0153/2a1d8b76-daf0-4068-8ad2-61c163e545a3_wxs_gdc_realn.bam 39488745732 BAM hg38 fb59bee7-446d-4669-bd78-6234196d0153 storage1 C283515.WXS.T C283515 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87308625-5842-4300-9202-99ba70be896c/7316UP-504-1105193.WholeExome.RP-1303.bam 20800549103 BAM hg19 87308625-5842-4300-9202-99ba70be896c storage1 C283515.WXS.T.hg38 C283515 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5aa549bf-6059-4691-9a1a-dc2e334019b0/e251ee1d-1c35-4852-89fe-50fc2a4ac948_wxs_gdc_realn.bam 28429320980 BAM hg38 5aa549bf-6059-4691-9a1a-dc2e334019b0 storage1 +C287328.RNA-Seq.genomic.R.hg38 C287328 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da1d494b-44f0-4d5a-8782-4747759fb8be/2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.genomic.gdc_realn.bam 10333048636 BAM hg38 da1d494b-44f0-4d5a-8782-4747759fb8be storage1 +C287328.RNA-Seq.genomic.T.hg38 C287328 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aaf5ce71-ec46-4424-a311-501e099d4b44/d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.genomic.gdc_realn.bam 8476784443 BAM hg38 aaf5ce71-ec46-4424-a311-501e099d4b44 storage1 C287328.RNA-Seq.R1.R C287328 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1500544e-8a1a-4d0d-a855-c856fd31993b/210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ NA 1500544e-8a1a-4d0d-a855-c856fd31993b storage1 C287328.RNA-Seq.R1.R C287328 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1500544e-8a1a-4d0d-a855-c856fd31993b/210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ NA 1500544e-8a1a-4d0d-a855-c856fd31993b storage1 C287328.RNA-Seq.R1.T C287328 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57/210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R1_001.fastq.gz 4021895606 FASTQ NA fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57 storage1 @@ -496,6 +532,7 @@ C287328.WXS.R C287328 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Activ C287328.WXS.R.hg38 C287328 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0767b6c1-462b-482e-ae62-eead44df14b1/d95e214e-46ad-4a63-b086-330764303d0d_wxs_gdc_realn.bam 32463143532 BAM hg38 0767b6c1-462b-482e-ae62-eead44df14b1 storage1 C287328.WXS.T C287328 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a3a21a5-e572-44f0-ad0b-3adcd908f5c9/7316UP-534-1105223.WholeExome.RP-1303.bam 22424204561 BAM hg19 0a3a21a5-e572-44f0-ad0b-3adcd908f5c9 storage1 C287328.WXS.T.hg38 C287328 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc0a38db-f504-49c1-b50f-25b1cc7af943/198d468f-807f-4fbc-80c3-db5d8d0b859f_wxs_gdc_realn.bam 30300912433 BAM hg38 bc0a38db-f504-49c1-b50f-25b1cc7af943 storage1 +C289419.RNA-Seq.genomic.T.hg38 C289419 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae9fdcdd-bfb0-402d-9231-fb9cd8ec8544/afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.genomic.gdc_realn.bam 7955591268 BAM hg38 ae9fdcdd-bfb0-402d-9231-fb9cd8ec8544 storage1 C289419.RNA-Seq.R1.T C289419 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31e45219-fd63-4028-9ca3-e3fa1ca82f60/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ NA 31e45219-fd63-4028-9ca3-e3fa1ca82f60 storage1 C289419.RNA-Seq.R1.T C289419 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31e45219-fd63-4028-9ca3-e3fa1ca82f60/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ NA 31e45219-fd63-4028-9ca3-e3fa1ca82f60 storage1 C289419.RNA-Seq.R2.T C289419 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd0e07cb-3358-4e26-88fa-5cc0839cda33/210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R2_001.fastq.gz 3881768353 FASTQ NA cd0e07cb-3358-4e26-88fa-5cc0839cda33 storage1 @@ -520,6 +557,8 @@ C289419.WXS.T.ADNA_ebf29e44 C289419 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C289419.WXS.T.ADNA_ebf29e44.hg38 C289419 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56d4c848-6cf4-4228-ad97-d3ab5056812d/4d704111-c691-4670-b26a-c087157c5729_wxs_gdc_realn.bam 57598635661 BAM hg38 56d4c848-6cf4-4228-ad97-d3ab5056812d storage1 C289419.WXS.T C289419 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a28c6ed4-40bd-415b-b9c7-590a62ec8555/7316UP-547-1105270.WholeExome.RP-1303.bam 27840699156 BAM hg19 a28c6ed4-40bd-415b-b9c7-590a62ec8555 storage1 C289419.WXS.T.hg38 C289419 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ca5f822-55be-4e81-81e4-5542cf2b6fe1/1db3a7f3-a22c-4898-82e3-8957c1238080_wxs_gdc_realn.bam 38434530527 BAM hg38 7ca5f822-55be-4e81-81e4-5542cf2b6fe1 storage1 +C298152.RNA-Seq.genomic.R.hg38 C298152 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a95076f7-665f-4db1-bd24-92df0fab9f9d/5bbc662c-9cad-4613-914e-41801669d647.rna_seq.genomic.gdc_realn.bam 8402037730 BAM hg38 a95076f7-665f-4db1-bd24-92df0fab9f9d storage1 +C298152.RNA-Seq.genomic.T.hg38 C298152 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d550de2a-003c-4124-93d9-ecb3bc8ae815/a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.genomic.gdc_realn.bam 9092434487 BAM hg38 d550de2a-003c-4124-93d9-ecb3bc8ae815 storage1 C298152.RNA-Seq.R1.R C298152 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc854351-5e28-4fa1-ba76-ab67e8069f29/210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ NA cc854351-5e28-4fa1-ba76-ab67e8069f29 storage1 C298152.RNA-Seq.R1.R C298152 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc854351-5e28-4fa1-ba76-ab67e8069f29/210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ NA cc854351-5e28-4fa1-ba76-ab67e8069f29 storage1 C298152.RNA-Seq.R1.T C298152 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbcc610d-609b-4631-a7fb-ce1d9879e0a1/210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R1_001.fastq.gz 4161951146 FASTQ NA dbcc610d-609b-4631-a7fb-ce1d9879e0a1 storage1 @@ -564,6 +603,7 @@ C317832.WXS.T.ADNA_4b7f0398 C317832 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C317832.WXS.T.ADNA_4b7f0398.hg38 C317832 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b5d151b-3c7f-423a-9684-a301d78e9be5/a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wxs_gdc_realn.bam 38774843412 BAM hg38 5b5d151b-3c7f-423a-9684-a301d78e9be5 storage1 C317832.WXS.T C317832 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e02a9123-6688-4178-8677-89fd8134cc3d/7316UP-435-1105196.WholeExome.RP-1303.bam 27481233727 BAM hg19 e02a9123-6688-4178-8677-89fd8134cc3d storage1 C317832.WXS.T.hg38 C317832 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3eb79f6-7744-45d2-b66f-8ab2c0a4a670/88fc297c-04d4-4bbe-885c-794e65593177_wxs_gdc_realn.bam 37645362593 BAM hg38 a3eb79f6-7744-45d2-b66f-8ab2c0a4a670 storage1 +C330255.RNA-Seq.genomic.R.hg38 C330255 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8c38202-af21-4e32-8b8f-0f39f4596057/45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.genomic.gdc_realn.bam 7897525386 BAM hg38 f8c38202-af21-4e32-8b8f-0f39f4596057 storage1 C330255.RNA-Seq.R1.R C330255 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecde968c-8d85-48f1-9b99-adf4c4f9c39c/210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ NA ecde968c-8d85-48f1-9b99-adf4c4f9c39c storage1 C330255.RNA-Seq.R1.R C330255 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecde968c-8d85-48f1-9b99-adf4c4f9c39c/210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ NA ecde968c-8d85-48f1-9b99-adf4c4f9c39c storage1 C330255.RNA-Seq.R2.R C330255 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d238885-5196-4422-9eed-12e61f4703be/210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R2_001.fastq.gz 3991687450 FASTQ NA 7d238885-5196-4422-9eed-12e61f4703be storage1 @@ -584,6 +624,9 @@ C330255.WXS.R C330255 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Activ C330255.WXS.R.hg38 C330255 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b071f1a3-9555-4530-8a58-09b927aa0b31/13c5f1a2-7dd1-4951-a439-0901fb185e09_wxs_gdc_realn.bam 30638579982 BAM hg38 b071f1a3-9555-4530-8a58-09b927aa0b31 storage1 C330255.WXS.T C330255 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2dac6b52-9e5f-4b31-a1b8-aa596110be2e/7316UP-361.WholeExome.RP-1303.bam 47917286279 BAM hg19 2dac6b52-9e5f-4b31-a1b8-aa596110be2e storage1 C330255.WXS.T.hg38 C330255 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1342f51b-95be-4e96-9d04-5ce16089b486/cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wxs_gdc_realn.bam 66332593745 BAM hg38 1342f51b-95be-4e96-9d04-5ce16089b486 storage1 +C383391.RNA-Seq.genomic.R.ARNA_7418231a.hg38 C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/152f351f-be9f-4c2d-823a-aeb5fb792399/481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.genomic.gdc_realn.bam 10428848178 BAM hg38 152f351f-be9f-4c2d-823a-aeb5fb792399 storage1 +C383391.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b82c95dc-d7e1-4bfb-9da7-491bfd6d7151/c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.genomic.gdc_realn.bam 9875883138 BAM hg38 b82c95dc-d7e1-4bfb-9da7-491bfd6d7151 storage1 +C383391.RNA-Seq.genomic.T.hg38 C383391 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1deaf9de-16fd-4555-b5c4-f32e6a712ae0/98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.genomic.gdc_realn.bam 9968773736 BAM hg38 1deaf9de-16fd-4555-b5c4-f32e6a712ae0 storage1 C383391.RNA-Seq.R1.R.ARNA_7418231a C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d0d950-c97c-4179-8150-9154a973d456/210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ NA 02d0d950-c97c-4179-8150-9154a973d456 storage1 C383391.RNA-Seq.R1.R.ARNA_7418231a C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d0d950-c97c-4179-8150-9154a973d456/210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ NA 02d0d950-c97c-4179-8150-9154a973d456 storage1 C383391.RNA-Seq.R1.R C383391 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67f1d243-6790-4916-8e93-e9712739d6d2/210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 3361626903 FASTQ NA 67f1d243-6790-4916-8e93-e9712739d6d2 storage1 @@ -1090,8 +1133,13 @@ C3L-00614.WGS.Tpb.hg38 C3L-00614 AML WGS tumor_peripheral_blood /storage1/fs1/di C3L-00614.WXS.Nbc.hg38 C3L-00614 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f205cdc-4bf7-429f-8eb7-12d1720e26ca/982cbe51-15db-4db8-a0d3-fbedac2e1964_wxs_gdc_realn.bam 28053111464 BAM hg38 5f205cdc-4bf7-429f-8eb7-12d1720e26ca storage1 C3L-00614.WXS.Tpb.hg38 C3L-00614 AML WXS tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74a7355e-e1eb-4907-8356-43c0e90c369b/d7f7dd24-3343-4822-9866-9fe2e596e709_wxs_gdc_realn.bam 32660492612 BAM hg38 74a7355e-e1eb-4907-8356-43c0e90c369b storage1 C3L-00617.RNA-Seq.genomic.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/709c8d53-60ae-4459-8cf6-bb0a64603ce5/33e42108-e72c-4dc4-9822-925bdaac7de8.rna_seq.genomic.gdc_realn.bam 8521585036 BAM hg38 709c8d53-60ae-4459-8cf6-bb0a64603ce5 storage1 +C3L-00617.RNA-Seq.genomic.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae3ab3e8-067b-46aa-b848-aada1942c5d7/eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.genomic.gdc_realn.bam 8532145032 BAM hg38 ae3ab3e8-067b-46aa-b848-aada1942c5d7 storage1 C3L-00617.RNA-Seq.R1.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4481a421-93e2-4023-ab56-355dd1c209e4/210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R1_001.fastq.gz 4548910658 FASTQ NA 4481a421-93e2-4023-ab56-355dd1c209e4 storage1 C3L-00617.RNA-Seq.R2.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38596d93-afca-4dea-b256-bc13577c67a5/210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R2_001.fastq.gz 4846840395 FASTQ NA 38596d93-afca-4dea-b256-bc13577c67a5 storage1 +C3L-00617.WGS.Nbc.hg38 C3L-00617 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fe3fee3-b27e-4159-9dc8-088f09e974f5/a4794da6-1610-49ca-a3c9-b703572c2990_wgs_gdc_realn.bam 211054240907 BAM hg38 4fe3fee3-b27e-4159-9dc8-088f09e974f5 storage1 +C3L-00617.WGS.Tbm.hg38 C3L-00617 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98eaebef-92a8-4da4-96f8-21ef7564d427/8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wgs_gdc_realn.bam 164255332846 BAM hg38 98eaebef-92a8-4da4-96f8-21ef7564d427 storage1 +C3L-00617.WXS.Nbc.hg38 C3L-00617 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/330d8216-962d-487b-9f5b-c57c7ffb7706/a4794da6-1610-49ca-a3c9-b703572c2990_wxs_gdc_realn.bam 37483160612 BAM hg38 330d8216-962d-487b-9f5b-c57c7ffb7706 storage1 +C3L-00617.WXS.Tbm.hg38 C3L-00617 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39e6f6b4-818a-422f-8ffe-543ff935c9c2/8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wxs_gdc_realn.bam 33271906056 BAM hg38 39e6f6b4-818a-422f-8ffe-543ff935c9c2 storage1 C3L-00622.RNA-Seq.R1.A C3L-00622 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee0d436f-ad91-401e-9b1a-8b0633bbbfe9/180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3332254867 FASTQ NA ee0d436f-ad91-401e-9b1a-8b0633bbbfe9 storage1 C3L-00622.RNA-Seq.R1.T C3L-00622 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49777911-e523-49e1-b3cd-8c9c7691a5d2/170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4356844919 FASTQ NA 49777911-e523-49e1-b3cd-8c9c7691a5d2 storage1 C3L-00622.RNA-Seq.R2.A C3L-00622 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a511911a-2894-4e73-bd51-e368bafbff63/180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R2_001.fastq.gz 3763713751 FASTQ NA a511911a-2894-4e73-bd51-e368bafbff63 storage1 @@ -1473,17 +1521,33 @@ C3L-01158.RNA-Seq.R1.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-01158.RNA-Seq.R2.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc148b01-aa6a-40cf-ac6c-75d6bbedd59b/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ NA cc148b01-aa6a-40cf-ac6c-75d6bbedd59b storage1 C3L-01160.RNA-Seq.R1.T C3L-01160 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b/190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ NA f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b storage1 C3L-01160.RNA-Seq.R2.T C3L-01160 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20a9db35-056d-43aa-b71d-dea448930ef0/190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ NA 20a9db35-056d-43aa-b71d-dea448930ef0 storage1 +C3L-01182.RNA-Seq.genomic.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4689e2e4-10aa-472a-b7b0-897370f61311/2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.genomic.gdc_realn.bam 5572543578 BAM hg38 4689e2e4-10aa-472a-b7b0-897370f61311 storage1 C3L-01182.RNA-Seq.R1.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3364d291-2534-49ae-b9e4-536ea85d6c47/211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R1_001.fastq.gz 2683736462 FASTQ NA 3364d291-2534-49ae-b9e4-536ea85d6c47 storage1 C3L-01182.RNA-Seq.R2.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22838a11-4def-4406-a04d-b9cfdfee17d2/211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R2_001.fastq.gz 2896718250 FASTQ NA 22838a11-4def-4406-a04d-b9cfdfee17d2 storage1 +C3L-01182.WGS.Nbc.hg38 C3L-01182 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7132b30-16af-41cd-a0be-7ed4971b0d12/a3d7c356-f06c-42e9-86d5-945264790f85_wgs_gdc_realn.bam 166664638598 BAM hg38 d7132b30-16af-41cd-a0be-7ed4971b0d12 storage1 +C3L-01182.WGS.Tpb.hg38 C3L-01182 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9203d3b3-eb05-4923-989d-1c8abb8a42ea/204def57-8086-4ef1-b2e8-1eec67459146_wgs_gdc_realn.bam 118587662579 BAM hg38 9203d3b3-eb05-4923-989d-1c8abb8a42ea storage1 +C3L-01182.WXS.Nbc.hg38 C3L-01182 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22ab3498-8a5a-40a2-ae0d-5a1c43a40b3e/a3d7c356-f06c-42e9-86d5-945264790f85_wxs_gdc_realn.bam 27428631714 BAM hg38 22ab3498-8a5a-40a2-ae0d-5a1c43a40b3e storage1 +C3L-01182.WXS.Tpb.hg38 C3L-01182 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/785e0821-0b17-45c6-bd0b-669c180df2fc/204def57-8086-4ef1-b2e8-1eec67459146_wxs_gdc_realn.bam 39867603059 BAM hg38 785e0821-0b17-45c6-bd0b-669c180df2fc storage1 C3L-01187.RNA-Seq.genomic.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ce6e03b-5705-4007-b432-200984d1ce38/a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.genomic.gdc_realn.bam 7315628890 BAM hg38 7ce6e03b-5705-4007-b432-200984d1ce38 storage1 +C3L-01187.RNA-Seq.genomic.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c5d12b5-97f0-419e-82bf-f2efc4f298e7/a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.genomic.gdc_realn.bam 7315628890 BAM hg38 9c5d12b5-97f0-419e-82bf-f2efc4f298e7 storage1 C3L-01187.RNA-Seq.R1.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36a6daf5-34a1-4963-b49d-99fedf970fb3/210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R1_001.fastq.gz 3753235852 FASTQ NA 36a6daf5-34a1-4963-b49d-99fedf970fb3 storage1 C3L-01187.RNA-Seq.R2.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0aace93-074d-4c07-9e93-9c9e28d62cd3/210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R2_001.fastq.gz 4042840966 FASTQ NA b0aace93-074d-4c07-9e93-9c9e28d62cd3 storage1 +C3L-01187.WXS.Nbc.hg38 C3L-01187 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec6f0fdb-2025-4824-8be4-aea9c55ebb72/0511313c-45b8-4efc-ada5-2ba9a2cc67a3_wxs_gdc_realn.bam 35989060288 BAM hg38 ec6f0fdb-2025-4824-8be4-aea9c55ebb72 storage1 +C3L-01187.WXS.Tbm.hg38 C3L-01187 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/921dcbd0-ce38-4af9-aea5-8c31b4105cce/1863f9ce-3290-488b-9291-8325fe6a6608_wxs_gdc_realn.bam 41773581801 BAM hg38 921dcbd0-ce38-4af9-aea5-8c31b4105cce storage1 C3L-01188.RNA-Seq.genomic.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d0d43e2-9964-4108-8ddf-9c117d0ebca3/c4ccddac-6605-48f1-9033-c3b0cec321bc.rna_seq.genomic.gdc_realn.bam 7688234249 BAM hg38 6d0d43e2-9964-4108-8ddf-9c117d0ebca3 storage1 +C3L-01188.RNA-Seq.genomic.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5654dad6-c513-4469-b5ab-9b4ea7d44b4f/811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.genomic.gdc_realn.bam 7695454826 BAM hg38 5654dad6-c513-4469-b5ab-9b4ea7d44b4f storage1 C3L-01188.RNA-Seq.R1.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65a13af0-794a-4f67-954b-26d8b22325fe/210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R1_001.fastq.gz 3897699936 FASTQ NA 65a13af0-794a-4f67-954b-26d8b22325fe storage1 C3L-01188.RNA-Seq.R2.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/716b4d9b-71cf-41ad-828b-d289d663f9bc/210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R2_001.fastq.gz 4168713236 FASTQ NA 716b4d9b-71cf-41ad-828b-d289d663f9bc storage1 +C3L-01188.WGS.Nbc.hg38 C3L-01188 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f50beef2-41e8-4cab-828a-3d2adc6d21eb/3bdffbda-35b4-4a13-a102-3979d363b53d_wgs_gdc_realn.bam 147582359097 BAM hg38 f50beef2-41e8-4cab-828a-3d2adc6d21eb storage1 +C3L-01188.WGS.Tbm.hg38 C3L-01188 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/443d5fcc-56db-4bb1-8765-0b2ae5399577/52d511e6-0272-45e6-a597-06aae5d26918_wgs_gdc_realn.bam 151199148802 BAM hg38 443d5fcc-56db-4bb1-8765-0b2ae5399577 storage1 +C3L-01188.WXS.Nbc.hg38 C3L-01188 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff371b49-e65e-4800-bbe1-788160cc302d/3bdffbda-35b4-4a13-a102-3979d363b53d_wxs_gdc_realn.bam 27611894401 BAM hg38 ff371b49-e65e-4800-bbe1-788160cc302d storage1 +C3L-01188.WXS.Tbm.hg38 C3L-01188 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f56befc9-9d5c-4c40-8602-a1cd336fbb93/52d511e6-0272-45e6-a597-06aae5d26918_wxs_gdc_realn.bam 29793720760 BAM hg38 f56befc9-9d5c-4c40-8602-a1cd336fbb93 storage1 C3L-01201.RNA-Seq.genomic.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7bb80ab7-6993-408b-ad66-121a94b4094e/8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.genomic.gdc_realn.bam 7486083855 BAM hg38 7bb80ab7-6993-408b-ad66-121a94b4094e storage1 +C3L-01201.RNA-Seq.genomic.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68b2ccb5-2e54-4666-b93b-27c8bd0e1eb2/8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.genomic.gdc_realn.bam 7486083855 BAM hg38 68b2ccb5-2e54-4666-b93b-27c8bd0e1eb2 storage1 C3L-01201.RNA-Seq.R1.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ee6cfbe-280d-411c-bf00-f541cc3ff6db/210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 3769469819 FASTQ NA 1ee6cfbe-280d-411c-bf00-f541cc3ff6db storage1 C3L-01201.RNA-Seq.R2.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d60360-a6a6-409f-bf80-438b462b4daf/210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 3999973406 FASTQ NA 02d60360-a6a6-409f-bf80-438b462b4daf storage1 +C3L-01201.WXS.Nbc.hg38 C3L-01201 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/606c41b0-38ac-411d-81a7-5cb0ab967a8e/04a42e33-ba61-4888-9dc5-0b8abd04d924_wxs_gdc_realn.bam 33562656252 BAM hg38 606c41b0-38ac-411d-81a7-5cb0ab967a8e storage1 +C3L-01201.WXS.Tbm.hg38 C3L-01201 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34f6ef17-ed26-477a-bc53-301f862bd5bd/21f6264c-abd6-4c1f-9874-2b8fffda42c9_wxs_gdc_realn.bam 30710997531 BAM hg38 34f6ef17-ed26-477a-bc53-301f862bd5bd storage1 C3L-01202.RNA-Seq.genomic.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29c613f3-0157-4f75-bc67-60369104757c/5909e34b-4205-40ad-92b0-c972a0e22c38.rna_seq.genomic.gdc_realn.bam 8475587318 BAM hg38 29c613f3-0157-4f75-bc67-60369104757c storage1 C3L-01202.RNA-Seq.R1.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/671428b2-fc87-432e-9bbc-d2690fea4ec0/190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R1_001.fastq.gz 4009177377 FASTQ NA 671428b2-fc87-432e-9bbc-d2690fea4ec0 storage1 C3L-01202.RNA-Seq.R2.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca4c00d1-c8a6-4326-8e11-c02894955b93/190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R2_001.fastq.gz 4733260248 FASTQ NA ca4c00d1-c8a6-4326-8e11-c02894955b93 storage1 @@ -1663,12 +1727,27 @@ C3L-01355.RNA-Seq.R1.T C3L-01355 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-01355.RNA-Seq.R2.T C3L-01355 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11d10042-d46f-4f41-a373-ff51eed11d6a/20210723_P2_E8_WB7988-plate2_S56_R2_001.fastq.gz 2582486984 FASTQ NA 11d10042-d46f-4f41-a373-ff51eed11d6a storage1 C3L-01355.RNA-Seq.R2.T C3L-01355 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa9b3c1e-498b-4e3e-8bb3-1242ba69dac3/171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R2_001.fastq.gz 4378833707 FASTQ NA aa9b3c1e-498b-4e3e-8bb3-1242ba69dac3 storage1 C3L-01425.RNA-Seq.genomic.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82ff5495-cdf4-4f5d-b5c8-4838b9e5db03/69e51d95-69a9-4d6e-a1d8-b93dd0d1e65c.rna_seq.genomic.gdc_realn.bam 8281507777 BAM hg38 82ff5495-cdf4-4f5d-b5c8-4838b9e5db03 storage1 +C3L-01425.RNA-Seq.genomic.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35362d20-50a1-41df-8d01-2d6f7c8bcb93/dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.genomic.gdc_realn.bam 8290250700 BAM hg38 35362d20-50a1-41df-8d01-2d6f7c8bcb93 storage1 C3L-01425.RNA-Seq.R1.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d5c2e00-b36f-4fa5-8b86-888dce250da2/210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R1_001.fastq.gz 3746499264 FASTQ NA 4d5c2e00-b36f-4fa5-8b86-888dce250da2 storage1 C3L-01425.RNA-Seq.R2.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7d86046-cfb4-4b3b-b891-c28b1571226e/210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R2_001.fastq.gz 4281876354 FASTQ NA e7d86046-cfb4-4b3b-b891-c28b1571226e storage1 +C3L-01425.WGS.Nbc.hg38 C3L-01425 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3289b16b-0383-4ece-914c-5ae5fa903955/09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wgs_gdc_realn.bam 210091772785 BAM hg38 3289b16b-0383-4ece-914c-5ae5fa903955 storage1 +C3L-01425.WGS.Tbm.hg38 C3L-01425 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3634e8ee-419e-422b-a492-b63f07b3840a/e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wgs_gdc_realn.bam 152059527928 BAM hg38 3634e8ee-419e-422b-a492-b63f07b3840a storage1 +C3L-01425.WXS.Nbc.hg38 C3L-01425 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0beb5388-ac5c-42d6-afc4-478ba0a192d0/09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wxs_gdc_realn.bam 56301198713 BAM hg38 0beb5388-ac5c-42d6-afc4-478ba0a192d0 storage1 +C3L-01425.WXS.Tbm.hg38 C3L-01425 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1089fe15-b965-4a52-8fbe-c43ac6fdab80/e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wxs_gdc_realn.bam 72395346430 BAM hg38 1089fe15-b965-4a52-8fbe-c43ac6fdab80 storage1 +C3L-01426.RNA-Seq.genomic.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31d09381-5988-47a9-b430-6a91bd4d59b3/a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.genomic.gdc_realn.bam 7504924340 BAM hg38 31d09381-5988-47a9-b430-6a91bd4d59b3 storage1 C3L-01426.RNA-Seq.R1.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8968ac3f-af34-49ac-bda9-abfc9b0e6373/220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R1_001.fastq.gz 3181868063 FASTQ NA 8968ac3f-af34-49ac-bda9-abfc9b0e6373 storage1 C3L-01426.RNA-Seq.R2.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe29e9a1-2fc3-4f7d-a588-d6a803878000/220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R2_001.fastq.gz 3581567319 FASTQ NA fe29e9a1-2fc3-4f7d-a588-d6a803878000 storage1 +C3L-01426.WGS.Nbc.hg38 C3L-01426 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6162a5c-7200-4643-ad34-2f17276ad642/d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wgs_gdc_realn.bam 151915395331 BAM hg38 d6162a5c-7200-4643-ad34-2f17276ad642 storage1 +C3L-01426.WGS.Tpb.hg38 C3L-01426 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/600534ec-3fd0-420d-9d39-45bf59abea96/0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wgs_gdc_realn.bam 123766292830 BAM hg38 600534ec-3fd0-420d-9d39-45bf59abea96 storage1 +C3L-01426.WXS.Nbc.hg38 C3L-01426 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd8ed386-d649-451f-bc9d-c3f7122c67d4/d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wxs_gdc_realn.bam 36774705127 BAM hg38 fd8ed386-d649-451f-bc9d-c3f7122c67d4 storage1 +C3L-01426.WXS.Tpb.hg38 C3L-01426 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47de7679-eeae-4887-9f0d-948efbe6eb3e/0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wxs_gdc_realn.bam 34689978278 BAM hg38 47de7679-eeae-4887-9f0d-948efbe6eb3e storage1 +C3L-01427.RNA-Seq.genomic.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/313c0d92-b237-4dd9-89d4-42b8c830c644/13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.genomic.gdc_realn.bam 9362616231 BAM hg38 313c0d92-b237-4dd9-89d4-42b8c830c644 storage1 C3L-01427.RNA-Seq.R1.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7874f5f7-1f87-491e-9daa-b1367b31131e/220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R1_001.fastq.gz 4438127361 FASTQ NA 7874f5f7-1f87-491e-9daa-b1367b31131e storage1 C3L-01427.RNA-Seq.R2.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28292aa9-7a99-4b48-9e8a-dcc7410d30f9/220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R2_001.fastq.gz 4801249773 FASTQ NA 28292aa9-7a99-4b48-9e8a-dcc7410d30f9 storage1 +C3L-01427.WGS.Nbc.hg38 C3L-01427 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/769c53ae-858c-4c6f-b0b5-4733b5d3be14/3a131fec-e5c3-4f69-a650-79f405d9122f_wgs_gdc_realn.bam 145700879645 BAM hg38 769c53ae-858c-4c6f-b0b5-4733b5d3be14 storage1 +C3L-01427.WGS.Tpb.hg38 C3L-01427 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e6e8a93-e0e6-4259-9227-345d4526b521/cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wgs_gdc_realn.bam 130747771504 BAM hg38 4e6e8a93-e0e6-4259-9227-345d4526b521 storage1 +C3L-01427.WXS.Nbc.hg38 C3L-01427 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9de71de-5b62-4097-b051-80bc9e639eec/3a131fec-e5c3-4f69-a650-79f405d9122f_wxs_gdc_realn.bam 34638950956 BAM hg38 c9de71de-5b62-4097-b051-80bc9e639eec storage1 +C3L-01427.WXS.Tpb.hg38 C3L-01427 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/272ef040-6001-45d8-8805-ae7028ab00ed/cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wxs_gdc_realn.bam 37273526505 BAM hg38 272ef040-6001-45d8-8805-ae7028ab00ed storage1 C3L-01453.RNA-Seq.R1.A C3L-01453 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6205c77-f737-451c-875e-f652c4e5512d/180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 4551298023 FASTQ NA f6205c77-f737-451c-875e-f652c4e5512d storage1 C3L-01453.RNA-Seq.R1.T C3L-01453 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c281e89f-9c99-416f-acec-621a455321c1/171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R1_001.fastq.gz 3644119512 FASTQ NA c281e89f-9c99-416f-acec-621a455321c1 storage1 C3L-01453.RNA-Seq.R2.A C3L-01453 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c23d217-08a0-4c70-87d6-a8f654143a21/180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 5028019962 FASTQ NA 3c23d217-08a0-4c70-87d6-a8f654143a21 storage1 @@ -1825,8 +1904,13 @@ C3L-01689.RNA-Seq.R1.A C3L-01689 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab C3L-01689.RNA-Seq.R1.T C3L-01689 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6fa2be8-70e6-4a3b-82a4-911ee2a935c7/171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R1_001.fastq.gz 4423527277 FASTQ NA c6fa2be8-70e6-4a3b-82a4-911ee2a935c7 storage1 C3L-01689.RNA-Seq.R2.A C3L-01689 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dcb43335-d796-4abf-b95e-0519563eba77/180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R2_001.fastq.gz 5133168728 FASTQ NA dcb43335-d796-4abf-b95e-0519563eba77 storage1 C3L-01689.RNA-Seq.R2.T C3L-01689 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/314c5ece-ac0c-43cb-9cb9-5074c5ddd17f/171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R2_001.fastq.gz 4577352236 FASTQ NA 314c5ece-ac0c-43cb-9cb9-5074c5ddd17f storage1 +C3L-01694.RNA-Seq.genomic.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02e9515d-6f20-4bff-a425-f93ec92c05c8/62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.genomic.gdc_realn.bam 7955895641 BAM hg38 02e9515d-6f20-4bff-a425-f93ec92c05c8 storage1 C3L-01694.RNA-Seq.R1.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c23e84a2-04e9-43f2-985b-066d931b4eb6/211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R1_001.fastq.gz 3641677214 FASTQ NA c23e84a2-04e9-43f2-985b-066d931b4eb6 storage1 C3L-01694.RNA-Seq.R2.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9495c32c-577f-4f2d-b673-9a76a4830300/211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R2_001.fastq.gz 3955993600 FASTQ NA 9495c32c-577f-4f2d-b673-9a76a4830300 storage1 +C3L-01694.WGS.Nbc.hg38 C3L-01694 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0e9d729-028a-44d1-938a-8c48e13b96da/5d684f4c-80fc-44b7-926a-af49366523b2_wgs_gdc_realn.bam 136284225494 BAM hg38 f0e9d729-028a-44d1-938a-8c48e13b96da storage1 +C3L-01694.WGS.Tpb.hg38 C3L-01694 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98a43f31-aa70-4a90-aad4-4f12a5fad7ab/6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wgs_gdc_realn.bam 138048227737 BAM hg38 98a43f31-aa70-4a90-aad4-4f12a5fad7ab storage1 +C3L-01694.WXS.Nbc.hg38 C3L-01694 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07fdceb1-5120-4aa7-b3ff-6f3e17d6fa7f/5d684f4c-80fc-44b7-926a-af49366523b2_wxs_gdc_realn.bam 35293704480 BAM hg38 07fdceb1-5120-4aa7-b3ff-6f3e17d6fa7f storage1 +C3L-01694.WXS.Tpb.hg38 C3L-01694 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/236a0476-77cc-4842-b611-7d8ae76256db/6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wxs_gdc_realn.bam 43163559785 BAM hg38 236a0476-77cc-4842-b611-7d8ae76256db storage1 C3L-01696.RNA-Seq.genomic.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/288ccc52-40f6-468c-8791-fd1ccfb6319b/efcb3566-22ef-4ca8-bd1d-349c10b1ac63.rna_seq.genomic.gdc_realn.bam 8651304951 BAM hg38 288ccc52-40f6-468c-8791-fd1ccfb6319b storage1 C3L-01696.RNA-Seq.R1.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96152e05-9a90-41d0-8aad-96fcd8a9abad/190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R1_001.fastq.gz 4068452902 FASTQ NA 96152e05-9a90-41d0-8aad-96fcd8a9abad storage1 C3L-01696.RNA-Seq.R2.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52f743ca-17e2-4e87-8e66-69f9224c4139/190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R2_001.fastq.gz 4695883551 FASTQ NA 52f743ca-17e2-4e87-8e66-69f9224c4139 storage1 @@ -2465,8 +2549,13 @@ C3L-02747.RNA-Seq.R1.T C3L-02747 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-02747.RNA-Seq.R1.T C3L-02747 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81138028-4130-4cf4-ac27-bf36e3e83039/20210723_P2_G3_WB7988-plate2_S75_R1_001.fastq.gz 5437415111 FASTQ NA 81138028-4130-4cf4-ac27-bf36e3e83039 storage1 C3L-02747.RNA-Seq.R2.T C3L-02747 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/134b54a4-abe8-48db-ac37-8c8d30ace986/190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R2_001.fastq.gz 4526930489 FASTQ NA 134b54a4-abe8-48db-ac37-8c8d30ace986 storage1 C3L-02747.RNA-Seq.R2.T C3L-02747 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56276d60-2394-48ff-a438-318c70060ca5/20210723_P2_G3_WB7988-plate2_S75_R2_001.fastq.gz 5531099316 FASTQ NA 56276d60-2394-48ff-a438-318c70060ca5 storage1 +C3L-02779.RNA-Seq.genomic.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25b19379-cafc-4e2c-8c34-36569a456c16/86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.genomic.gdc_realn.bam 8311113266 BAM hg38 25b19379-cafc-4e2c-8c34-36569a456c16 storage1 C3L-02779.RNA-Seq.R1.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d599c99-8756-426d-a6df-9620e51431fa/220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4043417939 FASTQ NA 9d599c99-8756-426d-a6df-9620e51431fa storage1 C3L-02779.RNA-Seq.R2.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a70c3b2-77d6-409d-82cf-1f729b1c3f15/220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 4516145295 FASTQ NA 0a70c3b2-77d6-409d-82cf-1f729b1c3f15 storage1 +C3L-02779.WGS.Nbc.hg38 C3L-02779 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/15c037cc-7c13-4563-aebd-cf963b3cb3e8/dad5716d-fddd-4631-806b-9163381abba9_wgs_gdc_realn.bam 154929092591 BAM hg38 15c037cc-7c13-4563-aebd-cf963b3cb3e8 storage1 +C3L-02779.WGS.Tpb.hg38 C3L-02779 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e27196b-be7e-4e2e-8aa6-7b75b02bda7e/821248bb-5679-49bd-ad37-14d52192cecf_wgs_gdc_realn.bam 165956927260 BAM hg38 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e storage1 +C3L-02779.WXS.Nbc.hg38 C3L-02779 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adf548df-165a-4d62-8dbc-e520d78a169d/dad5716d-fddd-4631-806b-9163381abba9_wxs_gdc_realn.bam 37612139490 BAM hg38 adf548df-165a-4d62-8dbc-e520d78a169d storage1 +C3L-02779.WXS.Tpb.hg38 C3L-02779 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16e82297-fe5b-4c67-96a2-f94850796941/821248bb-5679-49bd-ad37-14d52192cecf_wxs_gdc_realn.bam 31291655214 BAM hg38 16e82297-fe5b-4c67-96a2-f94850796941 storage1 C3L-02800.RNA-Seq.R1.T C3L-02800 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74796345-0996-44be-aa00-56c8b0a1a1ac/190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R1_001.fastq.gz 4508868945 FASTQ NA 74796345-0996-44be-aa00-56c8b0a1a1ac storage1 C3L-02800.RNA-Seq.R2.T C3L-02800 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/923374c5-05a8-454f-ab87-2f06fb05351b/190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R2_001.fastq.gz 5069170985 FASTQ NA 923374c5-05a8-454f-ab87-2f06fb05351b storage1 C3L-02802.RNA-Seq.R1.T C3L-02802 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2919c92e-46ae-471b-8662-1e786b95dc8a/20210729_P3_H6_WB7988-Plate3_S90_R1_001.fastq.gz 6331741084 FASTQ NA 2919c92e-46ae-471b-8662-1e786b95dc8a storage1 @@ -2638,8 +2727,13 @@ C3L-03272.RNA-Seq.R1.A C3L-03272 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-03272.RNA-Seq.R1.T C3L-03272 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ade6ad8e-5427-41bf-b2b3-338c7b40c786/190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3938286963 FASTQ NA ade6ad8e-5427-41bf-b2b3-338c7b40c786 storage1 C3L-03272.RNA-Seq.R2.A C3L-03272 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47bf26e4-b41b-40a3-b114-29cdb58d698b/190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R2_001.fastq.gz 3777452158 FASTQ NA 47bf26e4-b41b-40a3-b114-29cdb58d698b storage1 C3L-03272.RNA-Seq.R2.T C3L-03272 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f88a9da-1dcb-47f7-9081-5247432544a8/190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4212220666 FASTQ NA 3f88a9da-1dcb-47f7-9081-5247432544a8 storage1 +C3L-03303.RNA-Seq.genomic.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4a4eecb-56a8-4c25-9d8b-6210069b382b/22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.genomic.gdc_realn.bam 8926090323 BAM hg38 d4a4eecb-56a8-4c25-9d8b-6210069b382b storage1 C3L-03303.RNA-Seq.R1.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50e07cc2-4c18-4b66-ad49-40c0ddb33156/211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R1_001.fastq.gz 4200665380 FASTQ NA 50e07cc2-4c18-4b66-ad49-40c0ddb33156 storage1 C3L-03303.RNA-Seq.R2.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/676f819f-ab8a-4d67-b924-4ea85853f451/211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R2_001.fastq.gz 4733354512 FASTQ NA 676f819f-ab8a-4d67-b924-4ea85853f451 storage1 +C3L-03303.WGS.Nbc.hg38 C3L-03303 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d5ffeab-8fde-4425-b4c2-709184c3574e/60ad18a7-b6b0-4584-b7c8-9eb861605047_wgs_gdc_realn.bam 112880245115 BAM hg38 5d5ffeab-8fde-4425-b4c2-709184c3574e storage1 +C3L-03303.WGS.Tpb.hg38 C3L-03303 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6/c5b83617-a80e-4728-90dc-840cc19cda6a_wgs_gdc_realn.bam 133305371881 BAM hg38 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 storage1 +C3L-03303.WXS.Nbc.hg38 C3L-03303 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/709ebea2-6679-4120-bbc8-0f5a280cdb95/60ad18a7-b6b0-4584-b7c8-9eb861605047_wxs_gdc_realn.bam 34925074666 BAM hg38 709ebea2-6679-4120-bbc8-0f5a280cdb95 storage1 +C3L-03303.WXS.Tpb.hg38 C3L-03303 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44aaaeb7-0526-4976-b170-77b2b1f02b45/c5b83617-a80e-4728-90dc-840cc19cda6a_wxs_gdc_realn.bam 33925470072 BAM hg38 44aaaeb7-0526-4976-b170-77b2b1f02b45 storage1 C3L-03308.RNA-Seq.genomic.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b38605b-6279-4e98-9aeb-36431f2b75ee/3f7b9d06-1830-4f4d-b6f7-694d5eafd773.rna_seq.genomic.gdc_realn.bam 8652036966 BAM hg38 6b38605b-6279-4e98-9aeb-36431f2b75ee storage1 C3L-03308.RNA-Seq.R1.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e16aef5-04b8-4503-a905-e437485f08fa/190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R1_001.fastq.gz 4245443481 FASTQ NA 0e16aef5-04b8-4503-a905-e437485f08fa storage1 C3L-03308.RNA-Seq.R2.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67adf4d2-b1a4-45a3-b423-04aeeff6e2b4/190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R2_001.fastq.gz 4634091106 FASTQ NA 67adf4d2-b1a4-45a3-b423-04aeeff6e2b4 storage1 @@ -2732,13 +2826,26 @@ C3L-03497.WGS.Tbm.hg38 C3L-03497 AML WGS tumor_bone_marrow /storage1/fs1/dinglab C3L-03497.WXS.Nbc.hg38 C3L-03497 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/348a2f38-a72f-45bf-8a42-1e6ee6119a96/bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wxs_gdc_realn.bam 37341337754 BAM hg38 348a2f38-a72f-45bf-8a42-1e6ee6119a96 storage1 C3L-03497.WXS.Tbm.hg38 C3L-03497 AML WXS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4ef610e-d021-431b-9e73-76fe7a7ae06a/450e4b1c-4c7f-445e-91bb-880d0024fa02_wxs_gdc_realn.bam 44535114934 BAM hg38 a4ef610e-d021-431b-9e73-76fe7a7ae06a storage1 C3L-03506.RNA-Seq.genomic.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30ad0aa1-1119-47ea-be94-70f39ea9f594/89195aa6-74e7-4321-a1f1-e0a3c729ea3f.rna_seq.genomic.gdc_realn.bam 7373615340 BAM hg38 30ad0aa1-1119-47ea-be94-70f39ea9f594 storage1 +C3L-03506.RNA-Seq.genomic.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6300ebb4-db79-408f-964b-f08fc5686f42/15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.genomic.gdc_realn.bam 7383637041 BAM hg38 6300ebb4-db79-408f-964b-f08fc5686f42 storage1 C3L-03506.RNA-Seq.R1.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/437768d4-042d-4ce3-976b-4661251774f4/210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R1_001.fastq.gz 3763741700 FASTQ NA 437768d4-042d-4ce3-976b-4661251774f4 storage1 C3L-03506.RNA-Seq.R2.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfb053a9-a6a0-4a3f-8753-0a09b0a66327/210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R2_001.fastq.gz 3971268601 FASTQ NA cfb053a9-a6a0-4a3f-8753-0a09b0a66327 storage1 +C3L-03506.WGS.Nbc.hg38 C3L-03506 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e01c3e7-f302-4e40-84fa-39093f664511/b955d449-4e11-4a49-9cf6-285624c143f8_wgs_gdc_realn.bam 196253332359 BAM hg38 0e01c3e7-f302-4e40-84fa-39093f664511 storage1 +C3L-03506.WGS.Tbm.hg38 C3L-03506 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e588d3ea-e49d-436d-ba8d-3078d662beeb/29bc2957-52fe-492b-a1d3-860e026feacb_wgs_gdc_realn.bam 149163033387 BAM hg38 e588d3ea-e49d-436d-ba8d-3078d662beeb storage1 +C3L-03506.WXS.Nbc.hg38 C3L-03506 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ccedbbe-7557-439d-b112-1298da45dabf/b955d449-4e11-4a49-9cf6-285624c143f8_wxs_gdc_realn.bam 36606170104 BAM hg38 0ccedbbe-7557-439d-b112-1298da45dabf storage1 +C3L-03506.WXS.Tbm.hg38 C3L-03506 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8ed37bf-da72-4f32-8064-7d5d9d6b578e/29bc2957-52fe-492b-a1d3-860e026feacb_wxs_gdc_realn.bam 44202542671 BAM hg38 c8ed37bf-da72-4f32-8064-7d5d9d6b578e storage1 C3L-03508.RNA-Seq.genomic.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d26f8520-bc54-4314-a864-6e4c58bc9289/d371b77a-0b52-448a-9efe-88e7b379b97f.rna_seq.genomic.gdc_realn.bam 8278132411 BAM hg38 d26f8520-bc54-4314-a864-6e4c58bc9289 storage1 +C3L-03508.RNA-Seq.genomic.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b5d0dd8-e739-4608-8f36-59c955c71a4d/be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.genomic.gdc_realn.bam 8279378392 BAM hg38 4b5d0dd8-e739-4608-8f36-59c955c71a4d storage1 C3L-03508.RNA-Seq.R1.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eff2fed0-50f2-463a-af08-4f7e2c407cd1/210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R1_001.fastq.gz 4258717693 FASTQ NA eff2fed0-50f2-463a-af08-4f7e2c407cd1 storage1 C3L-03508.RNA-Seq.R2.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f0b5557-93f6-493d-a913-876087e28fcc/210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R2_001.fastq.gz 4482410886 FASTQ NA 9f0b5557-93f6-493d-a913-876087e28fcc storage1 +C3L-03508.WGS.Nbc.hg38 C3L-03508 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/931985c6-ced7-4c82-b2ef-ed40d574818f/bd67068d-c347-4456-9873-6215dcad3079_wgs_gdc_realn.bam 155897816745 BAM hg38 931985c6-ced7-4c82-b2ef-ed40d574818f storage1 +C3L-03508.WGS.Tbm.hg38 C3L-03508 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb2d66d8-1b52-4fa6-9732-902cab19da2b/9b7446ea-aee1-41d6-b664-9e789f04c463_wgs_gdc_realn.bam 137496545054 BAM hg38 eb2d66d8-1b52-4fa6-9732-902cab19da2b storage1 +C3L-03508.WXS.Nbc.hg38 C3L-03508 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4749abe5-0c59-4005-9b4b-56aab04fd2d2/bd67068d-c347-4456-9873-6215dcad3079_wxs_gdc_realn.bam 38543708143 BAM hg38 4749abe5-0c59-4005-9b4b-56aab04fd2d2 storage1 +C3L-03508.WXS.Tbm.hg38 C3L-03508 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34c0ba20-4cf2-4551-b896-7820e41613f5/9b7446ea-aee1-41d6-b664-9e789f04c463_wxs_gdc_realn.bam 27759959188 BAM hg38 34c0ba20-4cf2-4551-b896-7820e41613f5 storage1 +C3L-03510.RNA-Seq.genomic.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46d62a30-5800-48f2-accf-1374573a2bb0/09b6a723-321a-4172-94c3-3a2787198146.rna_seq.genomic.gdc_realn.bam 9524510209 BAM hg38 46d62a30-5800-48f2-accf-1374573a2bb0 storage1 C3L-03510.RNA-Seq.R1.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d1b1ada-a377-4967-bf87-6f932737d579/210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R1_001.fastq.gz 4251229637 FASTQ NA 0d1b1ada-a377-4967-bf87-6f932737d579 storage1 C3L-03510.RNA-Seq.R2.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b51fead-61ec-46e0-a257-af0103cbda61/210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R2_001.fastq.gz 4582311192 FASTQ NA 7b51fead-61ec-46e0-a257-af0103cbda61 storage1 +C3L-03510.WGS.Nbc.hg38 C3L-03510 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f800b205-92ba-4e0d-90bf-71788445fa57/ccf25dcd-3d07-4364-ba84-4d3ef2594ff5_wgs_gdc_realn.bam 150767993249 BAM hg38 f800b205-92ba-4e0d-90bf-71788445fa57 storage1 +C3L-03510.WGS.Tbm.hg38 C3L-03510 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d7fe562-8c05-48ae-988c-7be3aa2fdbe4/9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wgs_gdc_realn.bam 174421184757 BAM hg38 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 storage1 C3L-03513.RNA-Seq.R1.A C3L-03513 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30c65fa6-6f8c-41cc-ae25-6089adc93750/200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 4012444445 FASTQ NA 30c65fa6-6f8c-41cc-ae25-6089adc93750 storage1 C3L-03513.RNA-Seq.R2.A C3L-03513 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f9e894b-8949-486f-ae58-ee15c1d111bf/200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4410946219 FASTQ NA 4f9e894b-8949-486f-ae58-ee15c1d111bf storage1 C3L-03589.RNA-Seq.R1.T C3L-03589 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e77f5f6a-e76c-48b6-90d8-51ce0c4b32ad/190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R1_001.fastq.gz 3472628912 FASTQ NA e77f5f6a-e76c-48b6-90d8-51ce0c4b32ad storage1 @@ -2796,6 +2903,7 @@ C3L-03727.RNA-Seq.R1.T C3L-03727 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-03727.RNA-Seq.R2.T C3L-03727 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f9a8462-d332-440b-829b-cb89534d53ac/190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ NA 7f9a8462-d332-440b-829b-cb89534d53ac storage1 C3L-03728.RNA-Seq.R1.T C3L-03728 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4baf937-60b5-42f9-a33e-1209aa16242b/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ NA b4baf937-60b5-42f9-a33e-1209aa16242b storage1 C3L-03728.RNA-Seq.R2.T C3L-03728 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c99ba97-600a-4b1f-8896-eaa03fcb0372/190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ NA 1c99ba97-600a-4b1f-8896-eaa03fcb0372 storage1 +C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/602fb004-e784-4254-b4af-0f64915cf9fd/d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.genomic.gdc_realn.bam 8079501100 BAM hg38 602fb004-e784-4254-b4af-0f64915cf9fd storage1 C3L-03733.RNA-Seq.R1.T C3L-03733 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c8b80a-f15c-47ad-927e-96483a71a4ac/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ NA d3c8b80a-f15c-47ad-927e-96483a71a4ac storage1 C3L-03733.RNA-Seq.R2.T C3L-03733 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d68a3a3f-d8d9-488f-b581-3eb6bf3c545f/201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ NA d68a3a3f-d8d9-488f-b581-3eb6bf3c545f storage1 C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b5cd4a1-6a8d-4d03-a714-0d819779e047/b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 73835643752 BAM hg38 4b5cd4a1-6a8d-4d03-a714-0d819779e047 storage1 @@ -2917,6 +3025,7 @@ C3L-04080.RNA-Seq.R1.A C3L-04080 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab C3L-04080.RNA-Seq.R1.T C3L-04080 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87c9b79e-abdb-40ab-b747-52765ddf30d7/190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4051178418 FASTQ NA 87c9b79e-abdb-40ab-b747-52765ddf30d7 storage1 C3L-04080.RNA-Seq.R2.A C3L-04080 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8567f306-f3e7-441d-aca0-38432ccfeb16/190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R2_001.fastq.gz 4600184115 FASTQ NA 8567f306-f3e7-441d-aca0-38432ccfeb16 storage1 C3L-04080.RNA-Seq.R2.T C3L-04080 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddeb1c1d-2624-46a6-8f66-d435d4c37f01/190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4511095235 FASTQ NA ddeb1c1d-2624-46a6-8f66-d435d4c37f01 storage1 +C3L-04081.RNA-Seq.genomic.T.hg38 C3L-04081 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc058a02-e82d-4807-864d-b429c8fbf3d5/b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.genomic.gdc_realn.bam 9151750057 BAM hg38 fc058a02-e82d-4807-864d-b429c8fbf3d5 storage1 C3L-04081.RNA-Seq.R1.T C3L-04081 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff00dd51-d902-4563-b623-786e9f78aaf5/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ NA ff00dd51-d902-4563-b623-786e9f78aaf5 storage1 C3L-04081.RNA-Seq.R1.T C3L-04081 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff00dd51-d902-4563-b623-786e9f78aaf5/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ NA ff00dd51-d902-4563-b623-786e9f78aaf5 storage1 C3L-04081.RNA-Seq.R2.T C3L-04081 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdef277c-4632-450b-8030-037e3dbe8b32/210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ NA bdef277c-4632-450b-8030-037e3dbe8b32 storage1 @@ -2937,6 +3046,7 @@ C3L-04083.WXS.N.hg38 C3L-04083 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3L-04083.WXS.T.hg38 C3L-04083 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502835bd-e7db-4616-8f28-dca0053b4397/c66bf4aa-16ce-43f4-a353-8244577bf31a_wxs_gdc_realn.bam 28832541743 BAM hg38 502835bd-e7db-4616-8f28-dca0053b4397 storage1 C3L-04084.RNA-Seq.R1.T C3L-04084 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c130ea-b93b-4fa3-9d65-ec453849df62/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ NA b2c130ea-b93b-4fa3-9d65-ec453849df62 storage1 C3L-04084.RNA-Seq.R2.T C3L-04084 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5862426d-2acc-420a-92be-9a0bbfca35d4/190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ NA 5862426d-2acc-420a-92be-9a0bbfca35d4 storage1 +C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0374b38f-c17b-4b24-87cf-386ea14434da/8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.genomic.gdc_realn.bam 9281811898 BAM hg38 0374b38f-c17b-4b24-87cf-386ea14434da storage1 C3L-04085.RNA-Seq.R1.T C3L-04085 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25f5bea4-fef4-4378-9ccb-8a5befebf88a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ NA 25f5bea4-fef4-4378-9ccb-8a5befebf88a storage1 C3L-04085.RNA-Seq.R2.T C3L-04085 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0486b67-d5ff-4ae5-97ff-218d95b1e496/201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ NA f0486b67-d5ff-4ae5-97ff-218d95b1e496 storage1 C3L-04085.WGS.N.hg38 C3L-04085 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71b6faf7-a10b-4bc5-b997-e075c6806937/a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 68911988155 BAM hg38 71b6faf7-a10b-4bc5-b997-e075c6806937 storage1 @@ -2959,10 +3069,20 @@ C3L-04216.RNA-Seq.R1.T C3L-04216 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-04216.RNA-Seq.R2.T C3L-04216 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56e142e2-4864-49a1-ad2e-475bf798ac98/200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R2_001.fastq.gz 3498782473 FASTQ NA 56e142e2-4864-49a1-ad2e-475bf798ac98 storage1 C3L-04216.WGS.N.hg38 C3L-04216 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b20b030c-97f3-4a04-bac4-a3139d0bf489/a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 88687570987 BAM hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 storage1 C3L-04216.WGS.T.hg38 C3L-04216 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fc1dd2f-7571-42ee-820c-68341519e90c/44f13f39-00b5-4c5b-9582-e06616a7f968_wgs_gdc_realn.bam 73775630867 BAM hg38 2fc1dd2f-7571-42ee-820c-68341519e90c storage1 +C3L-04231.RNA-Seq.genomic.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bcc6f9d-4535-4009-81bb-f86deadd16ee/5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.genomic.gdc_realn.bam 8267197181 BAM hg38 8bcc6f9d-4535-4009-81bb-f86deadd16ee storage1 C3L-04231.RNA-Seq.R1.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ce5469b-6555-41ad-b583-abacf090c5ff/210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R1_001.fastq.gz 3267834385 FASTQ NA 0ce5469b-6555-41ad-b583-abacf090c5ff storage1 C3L-04231.RNA-Seq.R2.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14695f91-0a51-4d0d-883e-5c1fe933df93/210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R2_001.fastq.gz 3783588039 FASTQ NA 14695f91-0a51-4d0d-883e-5c1fe933df93 storage1 +C3L-04231.WGS.Nbc.hg38 C3L-04231 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/529ad08a-dedd-4191-abe7-f747e9306138/3f65c678-a826-4ffa-b11a-480424b74dec_wgs_gdc_realn.bam 163200210374 BAM hg38 529ad08a-dedd-4191-abe7-f747e9306138 storage1 +C3L-04231.WGS.Tbm.hg38 C3L-04231 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c/83b06238-a197-43b3-b710-4b287a9ad2c8_wgs_gdc_realn.bam 141972851013 BAM hg38 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c storage1 +C3L-04231.WXS.Nbc.hg38 C3L-04231 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16ae477a-e93e-467b-bcdc-4b3667ea8056/3f65c678-a826-4ffa-b11a-480424b74dec_wxs_gdc_realn.bam 31967721084 BAM hg38 16ae477a-e93e-467b-bcdc-4b3667ea8056 storage1 +C3L-04231.WXS.Tbm.hg38 C3L-04231 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3326b22-689d-4b80-baba-b22e6e41b57e/83b06238-a197-43b3-b710-4b287a9ad2c8_wxs_gdc_realn.bam 30045221236 BAM hg38 b3326b22-689d-4b80-baba-b22e6e41b57e storage1 +C3L-04236.RNA-Seq.genomic.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/148940bd-eaec-4e67-b622-ea81f2f0a269/f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.genomic.gdc_realn.bam 9715154896 BAM hg38 148940bd-eaec-4e67-b622-ea81f2f0a269 storage1 C3L-04236.RNA-Seq.R1.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53b6301b-9fe3-4e09-aa52-ad01479e1d61/210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R1_001.fastq.gz 4506933232 FASTQ NA 53b6301b-9fe3-4e09-aa52-ad01479e1d61 storage1 C3L-04236.RNA-Seq.R2.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d085633a-e3b6-4387-a6ea-6da417fb8c1e/210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R2_001.fastq.gz 5151304611 FASTQ NA d085633a-e3b6-4387-a6ea-6da417fb8c1e storage1 +C3L-04236.WGS.Nbc.hg38 C3L-04236 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd22f225-d998-47b7-894b-79a9d7ac4109/2a94f3f0-5ef4-4443-9af7-d26820695de7_wgs_gdc_realn.bam 181836818026 BAM hg38 fd22f225-d998-47b7-894b-79a9d7ac4109 storage1 +C3L-04236.WGS.Tbm.hg38 C3L-04236 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88ec4690-af60-4ef8-970e-324e05ed6101/20c5a330-281b-4b20-9f44-f52e66634199_wgs_gdc_realn.bam 164129559131 BAM hg38 88ec4690-af60-4ef8-970e-324e05ed6101 storage1 +C3L-04236.WXS.Nbc.hg38 C3L-04236 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da0e8d5a-812d-47f6-88c6-4dbf8db367a3/2a94f3f0-5ef4-4443-9af7-d26820695de7_wxs_gdc_realn.bam 34079235614 BAM hg38 da0e8d5a-812d-47f6-88c6-4dbf8db367a3 storage1 +C3L-04236.WXS.Tbm.hg38 C3L-04236 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3158eeeb-311c-4bd3-8a9f-439a902f49ab/20c5a330-281b-4b20-9f44-f52e66634199_wxs_gdc_realn.bam 30235908890 BAM hg38 3158eeeb-311c-4bd3-8a9f-439a902f49ab storage1 C3L-04241.RNA-Seq.genomic.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89a57622-e4d2-486a-98ea-3143eeeed597/fe34ac31-f854-4b1c-8136-ced4a2a42c60.rna_seq.genomic.gdc_realn.bam 7675660808 BAM hg38 89a57622-e4d2-486a-98ea-3143eeeed597 storage1 C3L-04241.RNA-Seq.R1.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad42ec5f-8d8a-4ead-81dd-6c3b8c515d6a/190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R1_001.fastq.gz 3702110696 FASTQ NA ad42ec5f-8d8a-4ead-81dd-6c3b8c515d6a storage1 C3L-04241.RNA-Seq.R2.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1340255-b0c0-47e4-b1ce-8886bff88015/190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R2_001.fastq.gz 4122426618 FASTQ NA c1340255-b0c0-47e4-b1ce-8886bff88015 storage1 @@ -2998,8 +3118,13 @@ C3L-04250.WGS.Tbm.hg38 C3L-04250 AML WGS tumor_bone_marrow /storage1/fs1/dinglab C3L-04250.WXS.Nbc.hg38 C3L-04250 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fd2af8b-5f99-4023-b9d8-4f33a604ecc1/0a9cd9ca-4e79-432a-b867-657633a54a05_wxs_gdc_realn.bam 35070999601 BAM hg38 4fd2af8b-5f99-4023-b9d8-4f33a604ecc1 storage1 C3L-04250.WXS.Tbm.hg38 C3L-04250 AML WXS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8bf2908-cee5-45e5-8f8c-9c8702937d29/a1f75b6d-197c-4dd6-9bc1-51210d45b7e6_wxs_gdc_realn.bam 34787269710 BAM hg38 e8bf2908-cee5-45e5-8f8c-9c8702937d29 storage1 C3L-04263.RNA-Seq.genomic.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7ae4c08-ae40-449b-919d-12e5905dd852/d0e69101-fcc6-4fd4-928a-66bd03a36545.rna_seq.genomic.gdc_realn.bam 7377573882 BAM hg38 e7ae4c08-ae40-449b-919d-12e5905dd852 storage1 +C3L-04263.RNA-Seq.genomic.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/205098c5-5e9d-424e-8f41-007bd0d9013b/57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.genomic.gdc_realn.bam 7384893748 BAM hg38 205098c5-5e9d-424e-8f41-007bd0d9013b storage1 C3L-04263.RNA-Seq.R1.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50d95169-c9e1-4ace-b490-77bb93633130/210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R1_001.fastq.gz 3811517383 FASTQ NA 50d95169-c9e1-4ace-b490-77bb93633130 storage1 C3L-04263.RNA-Seq.R2.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5dbbe15-28a7-4d3b-968c-08bc5b42d514/210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R2_001.fastq.gz 4043219750 FASTQ NA e5dbbe15-28a7-4d3b-968c-08bc5b42d514 storage1 +C3L-04263.WGS.Nbc.hg38 C3L-04263 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/142d091a-aba1-4173-8c45-567d7ce4ee7f/74b5645c-6c73-4d3f-b50a-22231bbbb212_wgs_gdc_realn.bam 128323112228 BAM hg38 142d091a-aba1-4173-8c45-567d7ce4ee7f storage1 +C3L-04263.WGS.Tbm.hg38 C3L-04263 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdae0859-8401-4b76-8d57-bb6607a778c8/27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wgs_gdc_realn.bam 153021383594 BAM hg38 fdae0859-8401-4b76-8d57-bb6607a778c8 storage1 +C3L-04263.WXS.Nbc.hg38 C3L-04263 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/812bb6f6-a281-4876-b300-5353cea468aa/74b5645c-6c73-4d3f-b50a-22231bbbb212_wxs_gdc_realn.bam 32206402604 BAM hg38 812bb6f6-a281-4876-b300-5353cea468aa storage1 +C3L-04263.WXS.Tbm.hg38 C3L-04263 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ef14de8-459f-4868-9ebc-f369eeedc6ff/27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wxs_gdc_realn.bam 39100014434 BAM hg38 9ef14de8-459f-4868-9ebc-f369eeedc6ff storage1 C3L-04265.RNA-Seq.genomic.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b850cc20-8bb8-4c06-a14e-f8be52349713/7642aa14-3e5a-4c8f-af3c-2eda6d5405dc.rna_seq.genomic.gdc_realn.bam 8839002515 BAM hg38 b850cc20-8bb8-4c06-a14e-f8be52349713 storage1 C3L-04265.RNA-Seq.R1.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53af00b1-31cd-4f05-9545-fd6eefaee541/190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R1_001.fastq.gz 4310509333 FASTQ NA 53af00b1-31cd-4f05-9545-fd6eefaee541 storage1 C3L-04265.RNA-Seq.R2.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab360685-deb0-47d2-8ae9-858cd090f7f3/190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R2_001.fastq.gz 4843139994 FASTQ NA ab360685-deb0-47d2-8ae9-858cd090f7f3 storage1 @@ -3007,11 +3132,19 @@ C3L-04265.WGS.Nbc.hg38 C3L-04265 AML WGS buccal_normal /storage1/fs1/dinglab/Act C3L-04265.WGS.Tbm.hg38 C3L-04265 AML WGS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4f7153b-3ba2-4a7e-8931-f9092ec7cc75/3ea9c4aa-eba1-4958-a2c1-04867a968f63_wgs_gdc_realn.bam 100425222211 BAM hg38 d4f7153b-3ba2-4a7e-8931-f9092ec7cc75 storage1 C3L-04265.WXS.Nbc.hg38 C3L-04265 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d54295f-abfd-4903-b7da-a345847aba8c/f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wxs_gdc_realn.bam 46731678277 BAM hg38 6d54295f-abfd-4903-b7da-a345847aba8c storage1 C3L-04265.WXS.Tbm.hg38 C3L-04265 AML WXS tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80c95db4-ec3f-4be0-b4ae-217eeee992c5/3ea9c4aa-eba1-4958-a2c1-04867a968f63_wxs_gdc_realn.bam 29828921940 BAM hg38 80c95db4-ec3f-4be0-b4ae-217eeee992c5 storage1 +C3L-04269.RNA-Seq.genomic.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c208f3c1-07a2-4c33-bef3-1d785b254c29/32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.genomic.gdc_realn.bam 8067191807 BAM hg38 c208f3c1-07a2-4c33-bef3-1d785b254c29 storage1 C3L-04269.RNA-Seq.R1.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d548139e-dcbb-4064-a6e5-47466195bc6b/211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R1_001.fastq.gz 3791093449 FASTQ NA d548139e-dcbb-4064-a6e5-47466195bc6b storage1 C3L-04269.RNA-Seq.R2.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9405337a-8f55-4d24-8926-d7fcb09c492b/211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R2_001.fastq.gz 4294650540 FASTQ NA 9405337a-8f55-4d24-8926-d7fcb09c492b storage1 +C3L-04269.WXS.Nbc.hg38 C3L-04269 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/211bca65-45bb-4347-8146-b83f2c4e2222/4f69dcfa-a3db-4857-953a-5f94514efa44_wxs_gdc_realn.bam 32385634097 BAM hg38 211bca65-45bb-4347-8146-b83f2c4e2222 storage1 +C3L-04269.WXS.Tpb.hg38 C3L-04269 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d62e5a8b-3ed8-4ce2-a033-ab59310ca232/5429cc08-8a1f-4a73-906e-f4946bddf5ac_wxs_gdc_realn.bam 36054933398 BAM hg38 d62e5a8b-3ed8-4ce2-a033-ab59310ca232 storage1 C3L-04270.RNA-Seq.genomic.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fca51570-39d7-44cc-a0b6-a4410ae1e12f/b6da2861-3beb-4e7c-a1f2-9ff7859944c9.rna_seq.genomic.gdc_realn.bam 8005596495 BAM hg38 fca51570-39d7-44cc-a0b6-a4410ae1e12f storage1 +C3L-04270.RNA-Seq.genomic.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddb8174d-4adf-4dbd-8faa-d2fce82e0a68/460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.genomic.gdc_realn.bam 8015174223 BAM hg38 ddb8174d-4adf-4dbd-8faa-d2fce82e0a68 storage1 C3L-04270.RNA-Seq.R1.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a3129ee-c1c8-4a42-a263-74e98cb4a75b/210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R1_001.fastq.gz 4138037151 FASTQ NA 8a3129ee-c1c8-4a42-a263-74e98cb4a75b storage1 C3L-04270.RNA-Seq.R2.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3475f320-39a9-4913-a496-0bf21360a545/210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R2_001.fastq.gz 4280223869 FASTQ NA 3475f320-39a9-4913-a496-0bf21360a545 storage1 +C3L-04270.WGS.Nbc.hg38 C3L-04270 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75406c0c-b54e-40da-8d71-7aebffc242d0/f926fa1d-c219-4251-8730-4a47e3087049_wgs_gdc_realn.bam 169120568393 BAM hg38 75406c0c-b54e-40da-8d71-7aebffc242d0 storage1 +C3L-04270.WGS.Tbm.hg38 C3L-04270 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a382bf00-ff44-4937-98ed-fc56b0596db2/68fa8f68-dd60-4029-af3d-7e15bc44afff_wgs_gdc_realn.bam 128554904097 BAM hg38 a382bf00-ff44-4937-98ed-fc56b0596db2 storage1 +C3L-04270.WXS.Nbc.hg38 C3L-04270 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b6bbc306-2ab1-45d3-9d04-6aca54c65c17/f926fa1d-c219-4251-8730-4a47e3087049_wxs_gdc_realn.bam 33432029614 BAM hg38 b6bbc306-2ab1-45d3-9d04-6aca54c65c17 storage1 +C3L-04270.WXS.Tbm.hg38 C3L-04270 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9373160f-3fdc-4920-8d50-c2ff94a07743/68fa8f68-dd60-4029-af3d-7e15bc44afff_wxs_gdc_realn.bam 29926952849 BAM hg38 9373160f-3fdc-4920-8d50-c2ff94a07743 storage1 C3L-04336.RNA-Seq.R1.A C3L-04336 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d5e8d44-c758-4c01-856f-923ce90088d9/200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R1_001.fastq.gz 4978141232 FASTQ NA 1d5e8d44-c758-4c01-856f-923ce90088d9 storage1 C3L-04336.RNA-Seq.R1.T C3L-04336 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1956c0ac-22a8-4eaf-b902-60f761cffb68/200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R1_001.fastq.gz 4978146204 FASTQ NA 1956c0ac-22a8-4eaf-b902-60f761cffb68 storage1 C3L-04336.RNA-Seq.R2.A C3L-04336 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bde959a3-48f7-439a-b1ea-2b56936ee3d2/200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R2_001.fastq.gz 5495426971 FASTQ NA bde959a3-48f7-439a-b1ea-2b56936ee3d2 storage1 @@ -3060,6 +3193,7 @@ C3L-04391.RNA-Seq.R1.A C3L-04391 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04391.RNA-Seq.R1.T C3L-04391 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22821061-ec85-4e1d-a424-b63a52995078/190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3849084503 FASTQ NA 22821061-ec85-4e1d-a424-b63a52995078 storage1 C3L-04391.RNA-Seq.R2.A C3L-04391 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7e9960d-2451-4a44-a3a2-539450cf26d1/190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3890281049 FASTQ NA f7e9960d-2451-4a44-a3a2-539450cf26d1 storage1 C3L-04391.RNA-Seq.R2.T C3L-04391 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19cba40a-ed47-40ef-a828-905b782c3ecd/190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4468925645 FASTQ NA 19cba40a-ed47-40ef-a828-905b782c3ecd storage1 +C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07d0687f-64ed-47d5-99ed-28cd07a64da9/3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.genomic.gdc_realn.bam 8489469921 BAM hg38 07d0687f-64ed-47d5-99ed-28cd07a64da9 storage1 C3L-04392.RNA-Seq.R1.T C3L-04392 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d815c7ac-1edc-4e57-a53b-947849bdb025/201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ NA d815c7ac-1edc-4e57-a53b-947849bdb025 storage1 C3L-04392.RNA-Seq.R2.T C3L-04392 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65353cb8-0cb1-4747-a95d-b11ff0bc7361/201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ NA 65353cb8-0cb1-4747-a95d-b11ff0bc7361 storage1 C3L-04392.WGS.N.hg38 C3L-04392 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/322aa7fa-fc71-4c68-9bc9-72cc87cfb567/ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 71169654491 BAM hg38 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 storage1 @@ -3101,13 +3235,26 @@ C3L-04475.RNA-Seq.R2.T C3L-04475 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3L-04479.RNA-Seq.R1.T C3L-04479 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a0446f6-2bd9-4e7a-b205-4489e718fd1f/190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R1_001.fastq.gz 3539480313 FASTQ NA 0a0446f6-2bd9-4e7a-b205-4489e718fd1f storage1 C3L-04479.RNA-Seq.R2.T C3L-04479 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea7cae74-cb6b-4d52-a75f-82d1935e4ed3/190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R2_001.fastq.gz 3922836348 FASTQ NA ea7cae74-cb6b-4d52-a75f-82d1935e4ed3 storage1 C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3317857-16cd-4496-8cc1-afe0b14be4cf/6de84e7e-9f5d-4d2d-a404-753e1efe3dca.rna_seq.genomic.gdc_realn.bam 7749523873 BAM hg38 e3317857-16cd-4496-8cc1-afe0b14be4cf storage1 +C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/326bea76-8325-4d77-88ab-04647cf30911/5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.genomic.gdc_realn.bam 7759602247 BAM hg38 326bea76-8325-4d77-88ab-04647cf30911 storage1 C3L-04483.RNA-Seq.R1.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ece23d9-50e4-4840-9368-54b95b44af41/210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 3883362168 FASTQ NA 1ece23d9-50e4-4840-9368-54b95b44af41 storage1 C3L-04483.RNA-Seq.R2.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/553777bf-1ca0-42a7-a5b0-af7bf80dafd7/210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4097126030 FASTQ NA 553777bf-1ca0-42a7-a5b0-af7bf80dafd7 storage1 +C3L-04483.WGS.Nbc.hg38 C3L-04483 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/708e41fa-402b-44c6-8464-85e884efcdf0/702c3b45-dda9-4164-83d6-3bc4d436ad83_wgs_gdc_realn.bam 164113953203 BAM hg38 708e41fa-402b-44c6-8464-85e884efcdf0 storage1 +C3L-04483.WGS.Tbm.hg38 C3L-04483 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f38bb10-5dcf-4db0-9ff4-b35eb84847b6/f1a6c87e-6570-41b1-b355-b12ab88b8481_wgs_gdc_realn.bam 152206566574 BAM hg38 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 storage1 +C3L-04483.WXS.Nbc.hg38 C3L-04483 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2b2218d-0336-4ba8-868c-8cbb6d8ecec1/702c3b45-dda9-4164-83d6-3bc4d436ad83_wxs_gdc_realn.bam 37011386097 BAM hg38 a2b2218d-0336-4ba8-868c-8cbb6d8ecec1 storage1 +C3L-04483.WXS.Tbm.hg38 C3L-04483 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/434d6273-0703-43f4-a08e-fe98515df752/f1a6c87e-6570-41b1-b355-b12ab88b8481_wxs_gdc_realn.bam 28707870850 BAM hg38 434d6273-0703-43f4-a08e-fe98515df752 storage1 C3L-04486.RNA-Seq.genomic.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6131bba4-7147-4940-b289-9401807a90a9/c0174473-14e2-4822-991f-8db3f22111ce.rna_seq.genomic.gdc_realn.bam 6984208922 BAM hg38 6131bba4-7147-4940-b289-9401807a90a9 storage1 +C3L-04486.RNA-Seq.genomic.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a129ac8-826c-4a9c-9ffd-fa6c6ef4ed45/8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.genomic.gdc_realn.bam 6993049248 BAM hg38 0a129ac8-826c-4a9c-9ffd-fa6c6ef4ed45 storage1 C3L-04486.RNA-Seq.R1.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/97364e63-a98f-41b4-bcc8-a4a2ba459ea3/210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R1_001.fastq.gz 3505940724 FASTQ NA 97364e63-a98f-41b4-bcc8-a4a2ba459ea3 storage1 C3L-04486.RNA-Seq.R2.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/270717a8-e9f6-4fae-936c-2abbf8d55a93/210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R2_001.fastq.gz 3682566223 FASTQ NA 270717a8-e9f6-4fae-936c-2abbf8d55a93 storage1 +C3L-04486.WGS.Nbc.hg38 C3L-04486 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99844d17-85aa-41d8-8dac-ee50133783a6/858c4c14-fba8-42ba-b73e-bc0248fee768_wgs_gdc_realn.bam 168425129082 BAM hg38 99844d17-85aa-41d8-8dac-ee50133783a6 storage1 +C3L-04486.WGS.Tbm.hg38 C3L-04486 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7258358e-0e5d-40cb-bf66-47a73d1e835a/498dca59-144f-4287-a68a-35999a24634a_wgs_gdc_realn.bam 142452739212 BAM hg38 7258358e-0e5d-40cb-bf66-47a73d1e835a storage1 +C3L-04489.RNA-Seq.genomic.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4df595cf-c425-43a8-bdb1-eb0188f5c1f9/35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.genomic.gdc_realn.bam 9107482825 BAM hg38 4df595cf-c425-43a8-bdb1-eb0188f5c1f9 storage1 C3L-04489.RNA-Seq.R1.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/893bc095-7b43-4637-8907-176b83942bd4/211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R1_001.fastq.gz 4091881710 FASTQ NA 893bc095-7b43-4637-8907-176b83942bd4 storage1 C3L-04489.RNA-Seq.R2.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fbdbc23-e6f9-4b8c-8276-a7ece7600a77/211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R2_001.fastq.gz 4428309615 FASTQ NA 4fbdbc23-e6f9-4b8c-8276-a7ece7600a77 storage1 +C3L-04489.WGS.Nbc.hg38 C3L-04489 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6625c57-93f4-4c2e-b532-8c887d04f22c/c40e8654-b3db-46cb-a941-a2ca9f597275_wgs_gdc_realn.bam 188675373049 BAM hg38 a6625c57-93f4-4c2e-b532-8c887d04f22c storage1 +C3L-04489.WGS.Tpb.hg38 C3L-04489 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3d3e92c-ed2b-4a4b-8291-040d062ae556/3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wgs_gdc_realn.bam 180784278937 BAM hg38 a3d3e92c-ed2b-4a4b-8291-040d062ae556 storage1 +C3L-04489.WXS.Nbc.hg38 C3L-04489 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59561b27-a5e3-420d-9f98-63d191c4e74c/c40e8654-b3db-46cb-a941-a2ca9f597275_wxs_gdc_realn.bam 98070189416 BAM hg38 59561b27-a5e3-420d-9f98-63d191c4e74c storage1 +C3L-04489.WXS.Tpb.hg38 C3L-04489 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ac42abf-43ea-46f0-a2e0-1b4c2b810106/3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wxs_gdc_realn.bam 39139211183 BAM hg38 0ac42abf-43ea-46f0-a2e0-1b4c2b810106 storage1 C3L-04495.RNA-Seq.R1.T C3L-04495 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/165bff0a-b883-4098-b18f-ff82d102e506/190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R1_001.fastq.gz 3310477843 FASTQ NA 165bff0a-b883-4098-b18f-ff82d102e506 storage1 C3L-04495.RNA-Seq.R2.T C3L-04495 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d7103c9-28f9-4015-8faa-16fc46808618/190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R2_001.fastq.gz 3637048729 FASTQ NA 5d7103c9-28f9-4015-8faa-16fc46808618 storage1 C3L-04496.RNA-Seq.R1.T C3L-04496 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad7050e7-829c-4255-adf9-fcc5bb6a0786/20210723_P2_F4_WB7988-plate2_S64_R1_001.fastq.gz 5632256532 FASTQ NA ad7050e7-829c-4255-adf9-fcc5bb6a0786 storage1 @@ -3156,11 +3303,21 @@ C3L-04759.RNA-Seq.R1.T C3L-04759 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-04759.RNA-Seq.R2.A C3L-04759 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6beda164-3c9d-4cda-8f28-d235c978c091/190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R2_001.fastq.gz 3386143896 FASTQ NA 6beda164-3c9d-4cda-8f28-d235c978c091 storage1 C3L-04759.RNA-Seq.R2.T C3L-04759 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/848e757d-af1a-4b7a-b260-3551cbf21d80/190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R2_001.fastq.gz 4397666777 FASTQ NA 848e757d-af1a-4b7a-b260-3551cbf21d80 storage1 C3L-04761.RNA-Seq.genomic.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8e62bb5-daba-4091-8be0-8b11dea64628/6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.genomic.gdc_realn.bam 7585660971 BAM hg38 b8e62bb5-daba-4091-8be0-8b11dea64628 storage1 +C3L-04761.RNA-Seq.genomic.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/111f4051-83dc-4226-a909-2a29c7f205ce/6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.genomic.gdc_realn.bam 7585660971 BAM hg38 111f4051-83dc-4226-a909-2a29c7f205ce storage1 C3L-04761.RNA-Seq.R1.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f15b85cd-4f59-420d-b186-8cc631e57b4b/210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R1_001.fastq.gz 3682020335 FASTQ NA f15b85cd-4f59-420d-b186-8cc631e57b4b storage1 C3L-04761.RNA-Seq.R2.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2986dc61-29bb-4478-9a20-d37b350606cd/210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R2_001.fastq.gz 4158910002 FASTQ NA 2986dc61-29bb-4478-9a20-d37b350606cd storage1 +C3L-04761.WGS.Nbc.hg38 C3L-04761 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b5193f4-61e1-40fd-97f0-eccf74fa790c/4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wgs_gdc_realn.bam 166004693494 BAM hg38 7b5193f4-61e1-40fd-97f0-eccf74fa790c storage1 +C3L-04761.WGS.Tbm.hg38 C3L-04761 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d065aa6-d8f3-42d3-b435-63d257e95504/7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wgs_gdc_realn.bam 140037712642 BAM hg38 3d065aa6-d8f3-42d3-b435-63d257e95504 storage1 +C3L-04761.WXS.Nbc.hg38 C3L-04761 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5e9a55d-077a-474e-9e46-634e8a9e1090/4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wxs_gdc_realn.bam 22169092016 BAM hg38 a5e9a55d-077a-474e-9e46-634e8a9e1090 storage1 +C3L-04761.WXS.Tbm.hg38 C3L-04761 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b47e314b-a40f-4a49-95b7-ae1bf7674558/7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wxs_gdc_realn.bam 31278135701 BAM hg38 b47e314b-a40f-4a49-95b7-ae1bf7674558 storage1 C3L-04763.RNA-Seq.genomic.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37284a67-3100-4769-99fb-9b6afbd8f92a/3f4751d7-f9c7-407b-9a02-0c5b770b8090.rna_seq.genomic.gdc_realn.bam 7259547148 BAM hg38 37284a67-3100-4769-99fb-9b6afbd8f92a storage1 +C3L-04763.RNA-Seq.genomic.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42b3ad09-8999-4847-9167-00c832aa5f70/55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.genomic.gdc_realn.bam 7265645962 BAM hg38 42b3ad09-8999-4847-9167-00c832aa5f70 storage1 C3L-04763.RNA-Seq.R1.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3a9b183-700e-4ae3-adc2-0ffade837bf0/210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 3438040411 FASTQ NA c3a9b183-700e-4ae3-adc2-0ffade837bf0 storage1 C3L-04763.RNA-Seq.R2.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab31f876-7f37-41c3-960e-43702282f5be/210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 3810935126 FASTQ NA ab31f876-7f37-41c3-960e-43702282f5be storage1 +C3L-04763.WGS.Nbc.hg38 C3L-04763 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14184470-cfa5-412b-8fd5-87bc5d88068f/326fbc29-721b-40cb-b508-a0256dc1cd08_wgs_gdc_realn.bam 156462698691 BAM hg38 14184470-cfa5-412b-8fd5-87bc5d88068f storage1 +C3L-04763.WGS.Tbm.hg38 C3L-04763 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b2dc5b0-dc90-4b22-8713-041c60b5ca3f/cc6720e2-8526-42f4-b384-e5e63f62aae5_wgs_gdc_realn.bam 141648633992 BAM hg38 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f storage1 +C3L-04763.WXS.Nbc.hg38 C3L-04763 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba2e573c-d870-40df-9413-ab7dd13caa74/326fbc29-721b-40cb-b508-a0256dc1cd08_wxs_gdc_realn.bam 39394401609 BAM hg38 ba2e573c-d870-40df-9413-ab7dd13caa74 storage1 +C3L-04763.WXS.Tbm.hg38 C3L-04763 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a341645d-479f-43f0-b895-33ae1051a6fd/cc6720e2-8526-42f4-b384-e5e63f62aae5_wxs_gdc_realn.bam 32626803814 BAM hg38 a341645d-479f-43f0-b895-33ae1051a6fd storage1 C3L-04764.RNA-Seq.genomic.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1719303-21b4-466f-afbd-dfad918ca955/a0ac96c8-8ec0-45ce-a4d0-91e559c49a2b.rna_seq.genomic.gdc_realn.bam 8905642511 BAM hg38 e1719303-21b4-466f-afbd-dfad918ca955 storage1 C3L-04764.RNA-Seq.R1.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/370f0a2e-f908-4c28-9686-1f126fd58771/190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R1_001.fastq.gz 4139086776 FASTQ NA 370f0a2e-f908-4c28-9686-1f126fd58771 storage1 C3L-04764.RNA-Seq.R2.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d253f323-45f9-4ceb-95d3-ac7d264bc1f8/190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R2_001.fastq.gz 4823140430 FASTQ NA d253f323-45f9-4ceb-95d3-ac7d264bc1f8 storage1 @@ -3332,10 +3489,16 @@ C3L-04922.RNA-Seq.R2.A C3L-04922 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-04922.RNA-Seq.R2.T C3L-04922 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ab6b521-f980-4560-8c83-39e7d958f5ba/200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 3904371477 FASTQ NA 0ab6b521-f980-4560-8c83-39e7d958f5ba storage1 C3L-04922.WGS.N.hg38 C3L-04922 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5/23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wgs_gdc_realn.bam 84359189370 BAM hg38 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 storage1 C3L-04922.WGS.T.hg38 C3L-04922 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3898ded-3f45-4fd3-bb20-c7a9e84aebf6/d0cab13b-f2df-4901-97cd-7a8556661410_wgs_gdc_realn.bam 80665752293 BAM hg38 d3898ded-3f45-4fd3-bb20-c7a9e84aebf6 storage1 +C3L-04971.RNA-Seq.genomic.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60b3e86c-c959-4c54-9923-c81ce857a58c/08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.genomic.gdc_realn.bam 9739276635 BAM hg38 60b3e86c-c959-4c54-9923-c81ce857a58c storage1 C3L-04971.RNA-Seq.R1.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d99c1f34-fb81-4eb9-a7cd-6633b8503c48/211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 4148351491 FASTQ NA d99c1f34-fb81-4eb9-a7cd-6633b8503c48 storage1 C3L-04971.RNA-Seq.R2.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b75f533d-4b00-472f-840b-75cd60a4db83/211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 4540860364 FASTQ NA b75f533d-4b00-472f-840b-75cd60a4db83 storage1 +C3L-04971.WXS.Nbc.hg38 C3L-04971 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8af4c3fd-04fd-4e76-bfee-67bb4a62d215/43f033f3-42d5-45ea-b9d2-4e9fb45232c4_wxs_gdc_realn.bam 40092493994 BAM hg38 8af4c3fd-04fd-4e76-bfee-67bb4a62d215 storage1 +C3L-04971.WXS.Tpb.hg38 C3L-04971 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b8cbab0-baaf-420c-8328-9ed0c99b09ea/d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wxs_gdc_realn.bam 48003722608 BAM hg38 7b8cbab0-baaf-420c-8328-9ed0c99b09ea storage1 +C3L-04976.RNA-Seq.genomic.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf590f02-6863-4801-99e6-8f7f57f8eeec/a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.genomic.gdc_realn.bam 7734574249 BAM hg38 cf590f02-6863-4801-99e6-8f7f57f8eeec storage1 C3L-04976.RNA-Seq.R1.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2/211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R1_001.fastq.gz 3833175431 FASTQ NA b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2 storage1 C3L-04976.RNA-Seq.R2.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05cced7e-a63b-4b94-a784-1c918fb8fa37/211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R2_001.fastq.gz 4120847331 FASTQ NA 05cced7e-a63b-4b94-a784-1c918fb8fa37 storage1 +C3L-04976.WXS.Nbc.hg38 C3L-04976 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7f73644-7904-417e-a93c-ce6d8158663c/b3d4bb03-7ba4-4dcf-8598-4359592394a2_wxs_gdc_realn.bam 25647276561 BAM hg38 c7f73644-7904-417e-a93c-ce6d8158663c storage1 +C3L-04976.WXS.Tpb.hg38 C3L-04976 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a88bcb3-8db3-4533-a9ff-45f6c13a6a73/688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wxs_gdc_realn.bam 38770748836 BAM hg38 7a88bcb3-8db3-4533-a9ff-45f6c13a6a73 storage1 C3L-05020.RNA-Seq.R1.A C3L-05020 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5ab75f7-4feb-46d2-ac3e-52984334b00e/200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R1_001.fastq.gz 3405898536 FASTQ NA f5ab75f7-4feb-46d2-ac3e-52984334b00e storage1 C3L-05020.RNA-Seq.R1.T C3L-05020 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f56cde44-a302-4e05-af29-99b841a4c531/200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R1_001.fastq.gz 3458601880 FASTQ NA f56cde44-a302-4e05-af29-99b841a4c531 storage1 C3L-05020.RNA-Seq.R2.A C3L-05020 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d873937-00f9-4770-8b8e-71354acc37bd/200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R2_001.fastq.gz 3610606327 FASTQ NA 9d873937-00f9-4770-8b8e-71354acc37bd storage1 @@ -3398,6 +3561,7 @@ C3L-05225.RNA-Seq.R2.A C3L-05225 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-05225.RNA-Seq.R2.T C3L-05225 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/383d18bb-9260-4acc-a5b3-6e80e90d638c/200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R2_001.fastq.gz 4049671016 FASTQ NA 383d18bb-9260-4acc-a5b3-6e80e90d638c storage1 C3L-05225.WGS.N.hg38 C3L-05225 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9/3b73345c-6a2e-4042-8cc9-0e55329d9058_wgs_gdc_realn.bam 72783765413 BAM hg38 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 storage1 C3L-05225.WGS.T.hg38 C3L-05225 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03956b75-1a7a-4dda-aec7-6efa70957bc1/81cdcf02-73f2-42cc-9306-818c9c6869ae_wgs_gdc_realn.bam 72293079183 BAM hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 storage1 +C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3de099eb-d3fb-47b0-9fb6-955a5c291dcb/2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.genomic.gdc_realn.bam 7856464192 BAM hg38 3de099eb-d3fb-47b0-9fb6-955a5c291dcb storage1 C3L-05239.RNA-Seq.R1.T C3L-05239 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8161f3a1-1b1a-442f-aaf3-faabd976c99a/201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ NA 8161f3a1-1b1a-442f-aaf3-faabd976c99a storage1 C3L-05239.RNA-Seq.R2.T C3L-05239 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2cc1d59-536e-4c59-89df-f6808282e91f/201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ NA b2cc1d59-536e-4c59-89df-f6808282e91f storage1 C3L-05239.WGS.N.hg38 C3L-05239 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74558bd0-2f33-412a-acc6-0274e7abf989/445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 69573503614 BAM hg38 74558bd0-2f33-412a-acc6-0274e7abf989 storage1 @@ -3405,38 +3569,89 @@ C3L-05239.WGS.T.hg38 C3L-05239 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14ce0eec-58af-472c-bae3-fdc1f9a2d1eb/445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM hg38 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb storage1 C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73dcd24f-0fde-46b2-a48b-11f402c43c99/7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM hg38 73dcd24f-0fde-46b2-a48b-11f402c43c99 storage1 C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9da0a924-2012-45f6-a2ec-f58170dd4a24/f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM hg38 9da0a924-2012-45f6-a2ec-f58170dd4a24 storage1 +C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01fb2668-aa9e-49e2-ae91-f8b93af2c23e/f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM hg38 01fb2668-aa9e-49e2-ae91-f8b93af2c23e storage1 C3L-05313.RNA-Seq.R1.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88212c9f-4a92-44be-acaa-3ff7e515ee07/210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R1_001.fastq.gz 4426516378 FASTQ NA 88212c9f-4a92-44be-acaa-3ff7e515ee07 storage1 C3L-05313.RNA-Seq.R2.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0bd7490-d7d8-4aa5-b785-90cb8408f484/210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R2_001.fastq.gz 4697624199 FASTQ NA a0bd7490-d7d8-4aa5-b785-90cb8408f484 storage1 +C3L-05313.WXS.Nbc.hg38 C3L-05313 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae1d8fd4-9a96-4d17-a889-ded2269865bf/fa3f28fc-ae10-4dae-af06-1d3e70583d71_wxs_gdc_realn.bam 38503948892 BAM hg38 ae1d8fd4-9a96-4d17-a889-ded2269865bf storage1 +C3L-05313.WXS.Tbm.hg38 C3L-05313 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9adefebd-3464-4c31-985f-06e98af14df1/3c8e4bcf-3953-4404-8302-d3372072fe80_wxs_gdc_realn.bam 28091554825 BAM hg38 9adefebd-3464-4c31-985f-06e98af14df1 storage1 +C3L-05315.RNA-Seq.genomic.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/585f3edb-394d-4f10-a04a-f82d4b64a27a/8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.genomic.gdc_realn.bam 8034997757 BAM hg38 585f3edb-394d-4f10-a04a-f82d4b64a27a storage1 C3L-05315.RNA-Seq.R1.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20e0a682-ec84-4c52-85ca-70f82abf6c2a/211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R1_001.fastq.gz 3912388792 FASTQ NA 20e0a682-ec84-4c52-85ca-70f82abf6c2a storage1 C3L-05315.RNA-Seq.R2.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19b29761-1f21-4660-80e5-6d704f08a5be/211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R2_001.fastq.gz 4291270091 FASTQ NA 19b29761-1f21-4660-80e5-6d704f08a5be storage1 +C3L-05315.WXS.Nbc.hg38 C3L-05315 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6f0dd60-9ac1-43b3-b30e-7b75c626e851/e09622f7-f63a-4a40-ad7e-fef31bbcbb83_wxs_gdc_realn.bam 81819332650 BAM hg38 a6f0dd60-9ac1-43b3-b30e-7b75c626e851 storage1 +C3L-05315.WXS.Tpb.hg38 C3L-05315 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/312fb399-0a32-4a1e-b744-317107e70d5e/32a00e9b-b7e7-4976-bf87-99ba02a48559_wxs_gdc_realn.bam 33836991288 BAM hg38 312fb399-0a32-4a1e-b744-317107e70d5e storage1 C3L-05316.RNA-Seq.genomic.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16ff463e-0b21-4752-a0c9-870ede4df1ba/d824b0a1-6c8c-4b97-8886-fbb36bffa7cc.rna_seq.genomic.gdc_realn.bam 8275329891 BAM hg38 16ff463e-0b21-4752-a0c9-870ede4df1ba storage1 +C3L-05316.RNA-Seq.genomic.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6409e8f4-392d-4b76-8619-83cc5ff8ad37/26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.genomic.gdc_realn.bam 8282260950 BAM hg38 6409e8f4-392d-4b76-8619-83cc5ff8ad37 storage1 C3L-05316.RNA-Seq.R1.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd3abe1d-c01d-4172-8a82-79a924db13a6/210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R1_001.fastq.gz 4194153238 FASTQ NA fd3abe1d-c01d-4172-8a82-79a924db13a6 storage1 C3L-05316.RNA-Seq.R2.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/306fd8bf-45ab-4a9a-abb2-e0bf1cd11927/210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R2_001.fastq.gz 4492439260 FASTQ NA 306fd8bf-45ab-4a9a-abb2-e0bf1cd11927 storage1 +C3L-05316.WXS.Nbc.hg38 C3L-05316 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/955c07ff-fa9a-4d95-b6f6-325d943e8ffb/fd86394a-4e44-4f82-a775-dc9e33f61b0a_wxs_gdc_realn.bam 40974285867 BAM hg38 955c07ff-fa9a-4d95-b6f6-325d943e8ffb storage1 +C3L-05316.WXS.Tbm.hg38 C3L-05316 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b48e68e0-d386-4275-a3f4-00e3724bdf80/f0b9d521-c9f4-4f90-9d64-6197ac84f000_wxs_gdc_realn.bam 35021016231 BAM hg38 b48e68e0-d386-4275-a3f4-00e3724bdf80 storage1 +C3L-05317.RNA-Seq.genomic.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa6ace1f-f6bc-4dbc-a18b-29aaef0ee46e/069a9872-3d96-4273-add0-00ec36972eed.rna_seq.genomic.gdc_realn.bam 8473288495 BAM hg38 aa6ace1f-f6bc-4dbc-a18b-29aaef0ee46e storage1 C3L-05317.RNA-Seq.R1.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96cae845-892d-45b4-82dd-abbb829ac7a0/211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R1_001.fastq.gz 3995264696 FASTQ NA 96cae845-892d-45b4-82dd-abbb829ac7a0 storage1 C3L-05317.RNA-Seq.R2.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/046e7c55-40fa-4464-8f56-7d45d33a0f08/211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R2_001.fastq.gz 4337475499 FASTQ NA 046e7c55-40fa-4464-8f56-7d45d33a0f08 storage1 +C3L-05317.WGS.Nbc.hg38 C3L-05317 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8169035d-610e-4406-a2bf-0252251f2300/564be77b-0307-454f-9977-800641a0f88f_wgs_gdc_realn.bam 161842268298 BAM hg38 8169035d-610e-4406-a2bf-0252251f2300 storage1 +C3L-05317.WGS.Tpb.hg38 C3L-05317 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/106a273c-f44a-47df-b769-0f5969ede688/d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wgs_gdc_realn.bam 135046354348 BAM hg38 106a273c-f44a-47df-b769-0f5969ede688 storage1 +C3L-05317.WXS.Nbc.hg38 C3L-05317 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a46cc866-2de4-46d9-b8dd-88e6b91c83f5/564be77b-0307-454f-9977-800641a0f88f_wxs_gdc_realn.bam 42041208181 BAM hg38 a46cc866-2de4-46d9-b8dd-88e6b91c83f5 storage1 +C3L-05317.WXS.Tpb.hg38 C3L-05317 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5513bf66-0b2c-4ef1-850b-6de5c1882efd/d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wxs_gdc_realn.bam 36668438169 BAM hg38 5513bf66-0b2c-4ef1-850b-6de5c1882efd storage1 +C3L-05318.RNA-Seq.genomic.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/978a0c15-abb0-405b-b2bd-efc929ecccf6/65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.genomic.gdc_realn.bam 9265027028 BAM hg38 978a0c15-abb0-405b-b2bd-efc929ecccf6 storage1 C3L-05318.RNA-Seq.R1.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85c6c9ac-1d34-446a-9da4-27b08104b1d3/211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R1_001.fastq.gz 4328353401 FASTQ NA 85c6c9ac-1d34-446a-9da4-27b08104b1d3 storage1 C3L-05318.RNA-Seq.R2.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0c73973-b3fc-4da0-9255-9d0f251fa09a/211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R2_001.fastq.gz 4763712926 FASTQ NA f0c73973-b3fc-4da0-9255-9d0f251fa09a storage1 +C3L-05318.WXS.Nbc.hg38 C3L-05318 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6e2c490-ffcc-464c-ad86-a7d4f73cb390/555827ed-b7e8-44b0-9a30-f7cb9267d605_wxs_gdc_realn.bam 37563262859 BAM hg38 d6e2c490-ffcc-464c-ad86-a7d4f73cb390 storage1 +C3L-05318.WXS.Tpb.hg38 C3L-05318 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/055faaab-28cb-4c6d-9fce-3fad493b76cb/b130869f-200a-4b0b-bb14-c216e8a8d8d3_wxs_gdc_realn.bam 33010345230 BAM hg38 055faaab-28cb-4c6d-9fce-3fad493b76cb storage1 +C3L-05320.RNA-Seq.genomic.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b72c76de-9539-4bf9-85b6-5bc3940cf11c/c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.genomic.gdc_realn.bam 7822584363 BAM hg38 b72c76de-9539-4bf9-85b6-5bc3940cf11c storage1 C3L-05320.RNA-Seq.R1.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58fe5b7e-1e2b-4b7b-8160-ff95ac1e8243/211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R1_001.fastq.gz 3894682572 FASTQ NA 58fe5b7e-1e2b-4b7b-8160-ff95ac1e8243 storage1 C3L-05320.RNA-Seq.R2.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b34f245-fca8-4c20-af9e-b8b66f6dfac3/211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R2_001.fastq.gz 4193776141 FASTQ NA 7b34f245-fca8-4c20-af9e-b8b66f6dfac3 storage1 +C3L-05320.WXS.Nbc.hg38 C3L-05320 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55f9d769-c711-4f7b-a3b6-33b16ff5734c/68cf330a-fa16-4132-bf9b-1cc003a13282_wxs_gdc_realn.bam 29293490828 BAM hg38 55f9d769-c711-4f7b-a3b6-33b16ff5734c storage1 +C3L-05320.WXS.Tpb.hg38 C3L-05320 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af1fde5a-49a0-4607-ab3d-dce11cada86a/d63123be-df53-4296-b83a-11f2fa243e86_wxs_gdc_realn.bam 73123744822 BAM hg38 af1fde5a-49a0-4607-ab3d-dce11cada86a storage1 C3L-05325.RNA-Seq.genomic.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2c0808a-434f-4148-8574-4f24d11e306d/e7613867-c769-4468-a41d-743d58c9d410.rna_seq.genomic.gdc_realn.bam 8073241991 BAM hg38 e2c0808a-434f-4148-8574-4f24d11e306d storage1 +C3L-05325.RNA-Seq.genomic.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea63d3fe-65d0-4dca-8e23-9c7c01fbc105/e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.genomic.gdc_realn.bam 8082040900 BAM hg38 ea63d3fe-65d0-4dca-8e23-9c7c01fbc105 storage1 C3L-05325.RNA-Seq.R1.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e0e8b18-e220-45e2-baea-b937188f3285/210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3865706854 FASTQ NA 9e0e8b18-e220-45e2-baea-b937188f3285 storage1 C3L-05325.RNA-Seq.R2.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c64aa9e-f5cc-4d55-bdad-8ba6f69a4075/210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4408396996 FASTQ NA 6c64aa9e-f5cc-4d55-bdad-8ba6f69a4075 storage1 +C3L-05325.WGS.Nbc.hg38 C3L-05325 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd569d7a-2452-48fc-bb63-a7592fecb358/e19d601a-2cc0-4fa6-9087-b132aad1231c_wgs_gdc_realn.bam 165632305636 BAM hg38 bd569d7a-2452-48fc-bb63-a7592fecb358 storage1 +C3L-05325.WGS.Tbm.hg38 C3L-05325 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc26201b-60ab-42fe-b54b-01affbeb695b/4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wgs_gdc_realn.bam 161685499178 BAM hg38 cc26201b-60ab-42fe-b54b-01affbeb695b storage1 +C3L-05325.WXS.Nbc.hg38 C3L-05325 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/508a3aa9-018b-4db7-9750-68ad57767d7b/e19d601a-2cc0-4fa6-9087-b132aad1231c_wxs_gdc_realn.bam 36111724180 BAM hg38 508a3aa9-018b-4db7-9750-68ad57767d7b storage1 +C3L-05325.WXS.Tbm.hg38 C3L-05325 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbc8b9df-2e77-4e96-bedb-039e831f7cd6/4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wxs_gdc_realn.bam 29330023655 BAM hg38 bbc8b9df-2e77-4e96-bedb-039e831f7cd6 storage1 +C3L-05326.RNA-Seq.genomic.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfa72d70-310c-465d-aa9c-fa1e0aa05f9d/9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.genomic.gdc_realn.bam 7897135026 BAM hg38 dfa72d70-310c-465d-aa9c-fa1e0aa05f9d storage1 C3L-05326.RNA-Seq.R1.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f93b8cdc-388d-43ac-82ea-65102255812d/210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R1_001.fastq.gz 3880007997 FASTQ NA f93b8cdc-388d-43ac-82ea-65102255812d storage1 C3L-05326.RNA-Seq.R2.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2efc1bcc-69be-4919-a672-f15e499562a7/210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R2_001.fastq.gz 4354319919 FASTQ NA 2efc1bcc-69be-4919-a672-f15e499562a7 storage1 +C3L-05326.WGS.Nbc.hg38 C3L-05326 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5642b833-19b5-4ca9-86f9-5f2dccbe5689/85125c43-2c59-4e3d-8314-cd25e40067d7_wgs_gdc_realn.bam 151390699487 BAM hg38 5642b833-19b5-4ca9-86f9-5f2dccbe5689 storage1 +C3L-05326.WGS.Tbm.hg38 C3L-05326 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45/b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wgs_gdc_realn.bam 131680411952 BAM hg38 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 storage1 +C3L-05326.WXS.Nbc.hg38 C3L-05326 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec091100-2100-4d29-a873-296e36d7db86/85125c43-2c59-4e3d-8314-cd25e40067d7_wxs_gdc_realn.bam 45992366612 BAM hg38 ec091100-2100-4d29-a873-296e36d7db86 storage1 +C3L-05326.WXS.Tbm.hg38 C3L-05326 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/724a4f7d-86d8-4998-99c7-f5720004fd6a/b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wxs_gdc_realn.bam 39306222403 BAM hg38 724a4f7d-86d8-4998-99c7-f5720004fd6a storage1 +C3L-05329.RNA-Seq.genomic.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1117f318-f3cc-4378-8c69-6346a644dfb5/59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.genomic.gdc_realn.bam 8182749938 BAM hg38 1117f318-f3cc-4378-8c69-6346a644dfb5 storage1 C3L-05329.RNA-Seq.R1.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db8f255b-3efc-4c13-a464-c72591e7a005/210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R1_001.fastq.gz 4216058908 FASTQ NA db8f255b-3efc-4c13-a464-c72591e7a005 storage1 C3L-05329.RNA-Seq.R2.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a5f7599-98e0-4f51-a77b-169bcfc351c8/210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R2_001.fastq.gz 4399016864 FASTQ NA 5a5f7599-98e0-4f51-a77b-169bcfc351c8 storage1 +C3L-05329.WGS.Nbc.hg38 C3L-05329 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/791e3842-80c8-401d-a611-a5b5825f9ce7/b456bbdf-1c90-4adb-9e43-3e230e94ddfa_wgs_gdc_realn.bam 152193846711 BAM hg38 791e3842-80c8-401d-a611-a5b5825f9ce7 storage1 +C3L-05329.WGS.Tbm.hg38 C3L-05329 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c76956b-1fb0-4fcf-af09-37466c893f73/23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wgs_gdc_realn.bam 217750987783 BAM hg38 2c76956b-1fb0-4fcf-af09-37466c893f73 storage1 C3L-05331.RNA-Seq.genomic.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3f92abe-b08c-4177-8a44-fe61673cdf2b/3328e4a1-4359-4a11-a185-6cec60a279de.rna_seq.genomic.gdc_realn.bam 7349586397 BAM hg38 e3f92abe-b08c-4177-8a44-fe61673cdf2b storage1 +C3L-05331.RNA-Seq.genomic.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b337f5d-e93d-4827-ab3c-deca03f2b5f5/e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.genomic.gdc_realn.bam 7357034413 BAM hg38 0b337f5d-e93d-4827-ab3c-deca03f2b5f5 storage1 C3L-05331.RNA-Seq.R1.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b151c6c4-6506-49eb-8799-962f84a085d2/210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R1_001.fastq.gz 3742653458 FASTQ NA b151c6c4-6506-49eb-8799-962f84a085d2 storage1 C3L-05331.RNA-Seq.R2.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1081644-0d91-4026-91cd-bacd5ff76d52/210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R2_001.fastq.gz 3998407281 FASTQ NA f1081644-0d91-4026-91cd-bacd5ff76d52 storage1 +C3L-05331.WGS.Nbc.hg38 C3L-05331 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbf8979f-080d-4a93-8c81-3b5b44a6a5db/bf80d543-ed68-4d80-b5a1-06a3b41c17db_wgs_gdc_realn.bam 183444998690 BAM hg38 bbf8979f-080d-4a93-8c81-3b5b44a6a5db storage1 +C3L-05331.WGS.Tbm.hg38 C3L-05331 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1fae58f-9b1b-4025-a253-9dcb308f4beb/2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wgs_gdc_realn.bam 131612383213 BAM hg38 f1fae58f-9b1b-4025-a253-9dcb308f4beb storage1 +C3L-05331.WXS.Nbc.hg38 C3L-05331 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9bfc5703-1f12-4a0e-9ae7-17b7cf0ed5f9/bf80d543-ed68-4d80-b5a1-06a3b41c17db_wxs_gdc_realn.bam 40929110588 BAM hg38 9bfc5703-1f12-4a0e-9ae7-17b7cf0ed5f9 storage1 +C3L-05331.WXS.Tbm.hg38 C3L-05331 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/786fd7da-f580-43f2-bb37-652f552c3bcd/2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wxs_gdc_realn.bam 32693574088 BAM hg38 786fd7da-f580-43f2-bb37-652f552c3bcd storage1 C3L-05334.RNA-Seq.genomic.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f9edf46-502b-4647-bf65-95b3a73e34d9/3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.genomic.gdc_realn.bam 7734283952 BAM hg38 5f9edf46-502b-4647-bf65-95b3a73e34d9 storage1 +C3L-05334.RNA-Seq.genomic.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46ced65f-cea5-45ca-a032-8a6d3f632e55/3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.genomic.gdc_realn.bam 7734283952 BAM hg38 46ced65f-cea5-45ca-a032-8a6d3f632e55 storage1 C3L-05334.RNA-Seq.R1.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e77c2a2d-dd02-46e6-a5d6-318bdb264914/210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R1_001.fastq.gz 4020869371 FASTQ NA e77c2a2d-dd02-46e6-a5d6-318bdb264914 storage1 C3L-05334.RNA-Seq.R2.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06f9c2be-9c21-41f3-9144-768393c3a873/210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R2_001.fastq.gz 4279525035 FASTQ NA 06f9c2be-9c21-41f3-9144-768393c3a873 storage1 +C3L-05334.WXS.Nbc.hg38 C3L-05334 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8cdf797c-dc5c-42d2-b159-92f0946be87a/df04ff41-e680-4a50-97fd-8b9e27252db2_wxs_gdc_realn.bam 39418047601 BAM hg38 8cdf797c-dc5c-42d2-b159-92f0946be87a storage1 +C3L-05334.WXS.Tbm.hg38 C3L-05334 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8551d58-caba-4a44-9925-0553d5017411/268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wxs_gdc_realn.bam 30563419398 BAM hg38 d8551d58-caba-4a44-9925-0553d5017411 storage1 C3L-05335.RNA-Seq.genomic.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56cef935-df4e-4e00-ba9c-df9d3f209643/ee012190-4cde-42d4-a3e2-70906feeb3b1.rna_seq.genomic.gdc_realn.bam 7899473493 BAM hg38 56cef935-df4e-4e00-ba9c-df9d3f209643 storage1 +C3L-05335.RNA-Seq.genomic.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f289acba-07c4-4be6-880b-f7eb2464d702/62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.genomic.gdc_realn.bam 7906694334 BAM hg38 f289acba-07c4-4be6-880b-f7eb2464d702 storage1 C3L-05335.RNA-Seq.R1.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96bcd3c9-b405-404c-b043-9ae0e4398765/210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ NA 96bcd3c9-b405-404c-b043-9ae0e4398765 storage1 C3L-05335.RNA-Seq.R2.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98a9da44-38a6-4705-9b02-f2332e487e40/210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ NA 98a9da44-38a6-4705-9b02-f2332e487e40 storage1 +C3L-05335.WGS.Nbc.hg38 C3L-05335 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76841f2b-4fd7-4071-b9d5-e5b573c876f0/db6412d0-5125-4730-baf5-786069bf9f6d_wgs_gdc_realn.bam 168491675145 BAM hg38 76841f2b-4fd7-4071-b9d5-e5b573c876f0 storage1 +C3L-05335.WGS.Tbm.hg38 C3L-05335 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66e7a5d3-2eff-4840-ab1e-448203643be7/1c6e8c35-0a4b-478a-887d-d10356b940f3_wgs_gdc_realn.bam 121501420032 BAM hg38 66e7a5d3-2eff-4840-ab1e-448203643be7 storage1 +C3L-05335.WXS.Nbc.hg38 C3L-05335 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b5cbbfe-66f9-45c1-9dea-02ae84d36b3a/db6412d0-5125-4730-baf5-786069bf9f6d_wxs_gdc_realn.bam 28397070021 BAM hg38 2b5cbbfe-66f9-45c1-9dea-02ae84d36b3a storage1 +C3L-05335.WXS.Tbm.hg38 C3L-05335 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/562149f9-5cac-4a4d-a8d5-d8d8276c5020/1c6e8c35-0a4b-478a-887d-d10356b940f3_wxs_gdc_realn.bam 63548466044 BAM hg38 562149f9-5cac-4a4d-a8d5-d8d8276c5020 storage1 C3L-05338.RNA-Seq.genomic.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2b191e0-64ed-4ac1-acf1-6aff92989e9b/9787d98c-a208-40b6-b9fa-6870f63a7092.rna_seq.genomic.gdc_realn.bam 6497370561 BAM hg38 a2b191e0-64ed-4ac1-acf1-6aff92989e9b storage1 +C3L-05338.RNA-Seq.genomic.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db401667-fc70-4d5b-bd95-d92d3838753f/951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.genomic.gdc_realn.bam 6504887075 BAM hg38 db401667-fc70-4d5b-bd95-d92d3838753f storage1 C3L-05338.RNA-Seq.R1.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8241771f-9643-4930-b2e7-9a475f409c7d/210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R1_001.fastq.gz 3333672847 FASTQ NA 8241771f-9643-4930-b2e7-9a475f409c7d storage1 C3L-05338.RNA-Seq.R2.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2866a4a3-9138-4b5f-81f8-58f3e929f704/210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R2_001.fastq.gz 3541389231 FASTQ NA 2866a4a3-9138-4b5f-81f8-58f3e929f704 storage1 +C3L-05338.WGS.Nbc.hg38 C3L-05338 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e9e7855-cdb9-4b37-b3ae-44e9650f3c71/34f8b20a-2fca-4b45-9186-825063365e7e_wgs_gdc_realn.bam 145590528581 BAM hg38 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 storage1 +C3L-05338.WGS.Tbm.hg38 C3L-05338 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/296b2dfb-9d7b-46c4-a848-4f96f19bb99b/d10673f3-3289-4c23-a8d5-5a2983adb6df_wgs_gdc_realn.bam 180510531787 BAM hg38 296b2dfb-9d7b-46c4-a848-4f96f19bb99b storage1 +C3L-05338.WXS.Nbc.hg38 C3L-05338 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f8df55f-a261-4316-bb19-972442496f86/34f8b20a-2fca-4b45-9186-825063365e7e_wxs_gdc_realn.bam 40043987846 BAM hg38 1f8df55f-a261-4316-bb19-972442496f86 storage1 +C3L-05338.WXS.Tbm.hg38 C3L-05338 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f344126-30a6-4718-bc90-4e1de755d276/d10673f3-3289-4c23-a8d5-5a2983adb6df_wxs_gdc_realn.bam 43084082849 BAM hg38 0f344126-30a6-4718-bc90-4e1de755d276 storage1 C3L-05369.RNA-Seq.R1.A C3L-05369 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23c565cb-ff39-4479-ba64-97c7208229d7/200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R1_001.fastq.gz 3843385000 FASTQ NA 23c565cb-ff39-4479-ba64-97c7208229d7 storage1 C3L-05369.RNA-Seq.R1.T C3L-05369 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba9f0249-aaf6-4c46-8dc5-ec1a00ac7f7c/200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R1_001.fastq.gz 3566418089 FASTQ NA ba9f0249-aaf6-4c46-8dc5-ec1a00ac7f7c storage1 C3L-05369.RNA-Seq.R2.A C3L-05369 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a8c552c-380a-4986-9f2d-f753e921b4fd/200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R2_001.fastq.gz 4754527121 FASTQ NA 9a8c552c-380a-4986-9f2d-f753e921b4fd storage1 @@ -3450,8 +3665,11 @@ C3L-05386.WGS.Nbc.hg38 C3L-05386 AML WGS buccal_normal /storage1/fs1/dinglab/Act C3L-05386.WGS.Tpb.hg38 C3L-05386 AML WGS tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f47fe90d-7a83-4f95-9c44-0c4ebc39d6b3/e0497046-63a5-4b92-b60f-39b07deae642_wgs_gdc_realn.bam 105969611759 BAM hg38 f47fe90d-7a83-4f95-9c44-0c4ebc39d6b3 storage1 C3L-05386.WXS.Nbc.hg38 C3L-05386 AML WXS buccal_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8236c897-0ac6-4158-b6b9-0335142cf267/9271ecfc-7bb8-4e93-9b7c-11c500666325_wxs_gdc_realn.bam 32712126516 BAM hg38 8236c897-0ac6-4158-b6b9-0335142cf267 storage1 C3L-05386.WXS.Tpb.hg38 C3L-05386 AML WXS tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad4db99e-f314-4049-915d-d80b7d6920d8/e0497046-63a5-4b92-b60f-39b07deae642_wxs_gdc_realn.bam 23352315586 BAM hg38 ad4db99e-f314-4049-915d-d80b7d6920d8 storage1 +C3L-05387.RNA-Seq.genomic.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/033b5afb-eefb-4b11-9216-72c518bd67a7/877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.genomic.gdc_realn.bam 7347126367 BAM hg38 033b5afb-eefb-4b11-9216-72c518bd67a7 storage1 C3L-05387.RNA-Seq.R1.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9079bc71-b14d-4ae8-9ce3-023aa2f2ff11/211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R1_001.fastq.gz 3552138579 FASTQ NA 9079bc71-b14d-4ae8-9ce3-023aa2f2ff11 storage1 C3L-05387.RNA-Seq.R2.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68a5d6f0-e119-426f-a564-b94fbf5ceb59/211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R2_001.fastq.gz 3882337040 FASTQ NA 68a5d6f0-e119-426f-a564-b94fbf5ceb59 storage1 +C3L-05387.WXS.Nbc.hg38 C3L-05387 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/244bf8e7-c556-45ac-89b8-7f2fb94e2ea6/34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wxs_gdc_realn.bam 37711680308 BAM hg38 244bf8e7-c556-45ac-89b8-7f2fb94e2ea6 storage1 +C3L-05387.WXS.Tpb.hg38 C3L-05387 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59889aba-57ce-481c-846c-47ca04ea6ece/431ccf9c-42b9-480a-9aac-0cbfb7536a3a_wxs_gdc_realn.bam 35598798050 BAM hg38 59889aba-57ce-481c-846c-47ca04ea6ece storage1 C3L-05392.RNA-Seq.R1.A C3L-05392 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/359e3754-8a38-4bb2-ab30-f45104721810/200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R1_001.fastq.gz 3855943575 FASTQ NA 359e3754-8a38-4bb2-ab30-f45104721810 storage1 C3L-05392.RNA-Seq.R1.T C3L-05392 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a09393b8-579c-4c23-aaf9-0601c79d9bca/200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R1_001.fastq.gz 4109366063 FASTQ NA a09393b8-579c-4c23-aaf9-0601c79d9bca storage1 C3L-05392.RNA-Seq.R2.A C3L-05392 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dca97796-2c4c-4d14-8074-a9614c031baf/200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R2_001.fastq.gz 4857414271 FASTQ NA dca97796-2c4c-4d14-8074-a9614c031baf storage1 @@ -3534,6 +3752,7 @@ C3L-05459.RNA-Seq.R1.T C3L-05459 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3L-05459.RNA-Seq.R2.T C3L-05459 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/160145eb-2e8c-497f-9985-4563f5193f36/20210729_P3_H2_WB7988-Plate3_S86_R2_001.fastq.gz 3621749148 FASTQ NA 160145eb-2e8c-497f-9985-4563f5193f36 storage1 C3L-05465.RNA-Seq.R1.T C3L-05465 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6739f032-f05a-480d-b1d0-fced61f3632d/20210723_P2_A4_WB7988-plate2_S4_R1_001.fastq.gz 3613717401 FASTQ NA 6739f032-f05a-480d-b1d0-fced61f3632d storage1 C3L-05465.RNA-Seq.R2.T C3L-05465 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3150177d-8dd0-46f7-ab8c-66b5510430ed/20210723_P2_A4_WB7988-plate2_S4_R2_001.fastq.gz 3694903230 FASTQ NA 3150177d-8dd0-46f7-ab8c-66b5510430ed storage1 +C3L-05481.RNA-Seq.genomic.T.RDNA_zmE5or7.hg38 C3L-05481 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2082ee2c-ae10-4125-ad40-a9543b528a1b/5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.genomic.gdc_realn.bam 10592084573 BAM hg38 2082ee2c-ae10-4125-ad40-a9543b528a1b storage1 C3L-05481.RNA-Seq.R1.T.RDNA_zmE5or7 C3L-05481 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3943d597-a775-439b-a983-db12f9b0ec2d/211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ NA 3943d597-a775-439b-a983-db12f9b0ec2d storage1 C3L-05481.RNA-Seq.R1.T.UNK_zmE5or7 C3L-05481 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3943d597-a775-439b-a983-db12f9b0ec2d/211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ NA 3943d597-a775-439b-a983-db12f9b0ec2d storage1 C3L-05481.RNA-Seq.R2.T.RDNA_zmE5or7 C3L-05481 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23eac32e-93a9-48a9-8cfd-f14448fb7fd5/211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R2_001.fastq.gz 5149213973 FASTQ NA 23eac32e-93a9-48a9-8cfd-f14448fb7fd5 storage1 @@ -3552,8 +3771,13 @@ C3L-05571.RNA-Seq.R2.T C3L-05571 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-05571.RNA-Seq.R2.T C3L-05571 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ee12b8b-d9df-4948-80c5-cc88369fd22f/200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R2_001.fastq.gz 3740963385 FASTQ NA 9ee12b8b-d9df-4948-80c5-cc88369fd22f storage1 C3L-05574.RNA-Seq.R1.T C3L-05574 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d22359eb-1963-4331-ac8e-5bfe21da379a/20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ NA d22359eb-1963-4331-ac8e-5bfe21da379a storage1 C3L-05574.RNA-Seq.R2.T C3L-05574 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0824ef96-da24-4447-b004-870d0a8f0e09/20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ NA 0824ef96-da24-4447-b004-870d0a8f0e09 storage1 +C3L-05678.RNA-Seq.genomic.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c16b1fb4-e579-48d7-8fbb-e73ad186cc01/8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.genomic.gdc_realn.bam 8240761627 BAM hg38 c16b1fb4-e579-48d7-8fbb-e73ad186cc01 storage1 C3L-05678.RNA-Seq.R1.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45e5054f-8448-4886-81a1-e3f10f0e9655/211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3989940556 FASTQ NA 45e5054f-8448-4886-81a1-e3f10f0e9655 storage1 C3L-05678.RNA-Seq.R2.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb536e99-1c65-411e-8e81-25175f6e5b5e/211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4326609003 FASTQ NA bb536e99-1c65-411e-8e81-25175f6e5b5e storage1 +C3L-05678.WGS.Nbc.hg38 C3L-05678 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42c8a39f-c216-4b9b-9397-0e17f6c3787f/1e4181e8-2336-4118-b562-34e9dcd705c4_wgs_gdc_realn.bam 108424647124 BAM hg38 42c8a39f-c216-4b9b-9397-0e17f6c3787f storage1 +C3L-05678.WGS.Tpb.hg38 C3L-05678 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9e37e32-d97e-4d6d-8ea9-843141103d21/45aba417-f9a2-4ff1-9f61-773f71e6f49d_wgs_gdc_realn.bam 145743222871 BAM hg38 c9e37e32-d97e-4d6d-8ea9-843141103d21 storage1 +C3L-05678.WXS.Nbc.hg38 C3L-05678 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a8cee33-0834-4a02-a43e-f3283b5334ec/1e4181e8-2336-4118-b562-34e9dcd705c4_wxs_gdc_realn.bam 40708797118 BAM hg38 4a8cee33-0834-4a02-a43e-f3283b5334ec storage1 +C3L-05678.WXS.Tpb.hg38 C3L-05678 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cda1c1e0-3597-466d-9622-696ac0051602/45aba417-f9a2-4ff1-9f61-773f71e6f49d_wxs_gdc_realn.bam 27372352224 BAM hg38 cda1c1e0-3597-466d-9622-696ac0051602 storage1 C3L-05693.RNA-Seq.R1.A C3L-05693 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41d75bd4-c284-404f-9997-d77ab8824fde/200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R1_001.fastq.gz 4007300060 FASTQ NA 41d75bd4-c284-404f-9997-d77ab8824fde storage1 C3L-05693.RNA-Seq.R1.T C3L-05693 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72528177-da54-44e1-9b6d-3461942f09a3/200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 5135433715 FASTQ NA 72528177-da54-44e1-9b6d-3461942f09a3 storage1 C3L-05693.RNA-Seq.R2.A C3L-05693 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e52534b-ef33-46e8-938e-4141a128b64d/200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R2_001.fastq.gz 4306863459 FASTQ NA 7e52534b-ef33-46e8-938e-4141a128b64d storage1 @@ -3568,16 +3792,41 @@ C3L-05761.RNA-Seq.R1.T C3L-05761 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Activ C3L-05761.RNA-Seq.R2.T C3L-05761 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bc066af-2499-41b7-a25c-254529224972/20210723_P2_A12_WB7988-plate2_S12_R2_001.fastq.gz 3104514210 FASTQ NA 4bc066af-2499-41b7-a25c-254529224972 storage1 C3L-05763.RNA-Seq.R1.T C3L-05763 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/facce343-1069-418e-a147-21ce454ae89b/20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ NA facce343-1069-418e-a147-21ce454ae89b storage1 C3L-05763.RNA-Seq.R2.T C3L-05763 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5080671f-2a43-47ef-bb3a-eb50c5ce36d3/20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ NA 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 storage1 +C3L-05811.RNA-Seq.genomic.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9be7dcb3-ca6a-4d18-9665-e8a0f0271070/156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.genomic.gdc_realn.bam 7336963723 BAM hg38 9be7dcb3-ca6a-4d18-9665-e8a0f0271070 storage1 C3L-05811.RNA-Seq.R1.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cb1b5aa-f403-498d-9050-f332ff16ac92/211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3684732251 FASTQ NA 6cb1b5aa-f403-498d-9050-f332ff16ac92 storage1 C3L-05811.RNA-Seq.R2.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af2c450c-3d51-4d43-ba60-0d8eb62b45bf/211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3855866298 FASTQ NA af2c450c-3d51-4d43-ba60-0d8eb62b45bf storage1 +C3L-05811.WGS.Nbc.hg38 C3L-05811 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/181017af-d709-456e-ac61-d28f02aee849/c711930c-7ca6-48e3-93c3-b3dd56557045_wgs_gdc_realn.bam 129587914122 BAM hg38 181017af-d709-456e-ac61-d28f02aee849 storage1 +C3L-05811.WGS.Tpb.hg38 C3L-05811 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4871fd28-e3ed-4c5a-b4a3-1610aa2281c9/e860a435-3ead-4be6-ab3d-8bb21f72ace8_wgs_gdc_realn.bam 142650707608 BAM hg38 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 storage1 +C3L-05811.WXS.Nbc.hg38 C3L-05811 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46925dff-cc17-4171-abf7-d449977beb8f/c711930c-7ca6-48e3-93c3-b3dd56557045_wxs_gdc_realn.bam 28750136778 BAM hg38 46925dff-cc17-4171-abf7-d449977beb8f storage1 +C3L-05811.WXS.Tpb.hg38 C3L-05811 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a55b5583-f9f9-4864-b605-0c5e79d270b6/e860a435-3ead-4be6-ab3d-8bb21f72ace8_wxs_gdc_realn.bam 35859996899 BAM hg38 a55b5583-f9f9-4864-b605-0c5e79d270b6 storage1 +C3L-05815.RNA-Seq.genomic.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d952e72d-3f8b-4bac-ab78-6c511c8179e7/1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.genomic.gdc_realn.bam 7738469029 BAM hg38 d952e72d-3f8b-4bac-ab78-6c511c8179e7 storage1 C3L-05815.RNA-Seq.R1.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb78f19a-d92a-4214-934c-10228f1eedab/211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3863776464 FASTQ NA fb78f19a-d92a-4214-934c-10228f1eedab storage1 C3L-05815.RNA-Seq.R2.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b97520ae-3d6d-45bd-8432-fe15b935ee85/211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4160927650 FASTQ NA b97520ae-3d6d-45bd-8432-fe15b935ee85 storage1 +C3L-05815.WGS.Nbc.hg38 C3L-05815 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16782800-b974-449d-a904-63e0450305c1/ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wgs_gdc_realn.bam 180660261361 BAM hg38 16782800-b974-449d-a904-63e0450305c1 storage1 +C3L-05815.WGS.Tpb.hg38 C3L-05815 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92bcc4c9-4f9c-49e5-85bf-2f017b14c25a/da70e406-4d9b-4969-85b4-6bdbfebb3baa_wgs_gdc_realn.bam 146047405514 BAM hg38 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a storage1 +C3L-05815.WXS.Nbc.hg38 C3L-05815 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b71ca46d-887c-4f93-8d39-d29a490b62fa/ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wxs_gdc_realn.bam 36411951793 BAM hg38 b71ca46d-887c-4f93-8d39-d29a490b62fa storage1 +C3L-05815.WXS.Tpb.hg38 C3L-05815 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09f05d78-9636-4c06-b153-babf5efa44b4/da70e406-4d9b-4969-85b4-6bdbfebb3baa_wxs_gdc_realn.bam 32032868839 BAM hg38 09f05d78-9636-4c06-b153-babf5efa44b4 storage1 +C3L-05816.RNA-Seq.genomic.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c1c7b96-66ce-44be-81f1-cd3101d1c12e/17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.genomic.gdc_realn.bam 8646661750 BAM hg38 6c1c7b96-66ce-44be-81f1-cd3101d1c12e storage1 C3L-05816.RNA-Seq.R1.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6530a944-65a6-445f-acd2-40167a8ebabb/211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R1_001.fastq.gz 4019035536 FASTQ NA 6530a944-65a6-445f-acd2-40167a8ebabb storage1 C3L-05816.RNA-Seq.R2.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a8aee28-cd05-4321-90b0-975466ae41ac/211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R2_001.fastq.gz 4355051207 FASTQ NA 1a8aee28-cd05-4321-90b0-975466ae41ac storage1 +C3L-05816.WGS.Nbc.hg38 C3L-05816 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0cc98eed-522d-4c11-927f-456208e184d8/77a1298b-2bc1-4de8-ad94-21cf8f17995e_wgs_gdc_realn.bam 145005729848 BAM hg38 0cc98eed-522d-4c11-927f-456208e184d8 storage1 +C3L-05816.WGS.Tpb.hg38 C3L-05816 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56e0e868-c221-40e0-9757-a091ca137a68/b47d4df7-625d-4f96-a984-cc32fbfe3621_wgs_gdc_realn.bam 120323006253 BAM hg38 56e0e868-c221-40e0-9757-a091ca137a68 storage1 +C3L-05816.WXS.Nbc.hg38 C3L-05816 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d96c9dee-d6ca-4abe-b1f5-df582acb9a32/77a1298b-2bc1-4de8-ad94-21cf8f17995e_wxs_gdc_realn.bam 33138596326 BAM hg38 d96c9dee-d6ca-4abe-b1f5-df582acb9a32 storage1 +C3L-05816.WXS.Tpb.hg38 C3L-05816 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66fbadaf-3853-46c1-8e14-0d1c6563d569/b47d4df7-625d-4f96-a984-cc32fbfe3621_wxs_gdc_realn.bam 34293709629 BAM hg38 66fbadaf-3853-46c1-8e14-0d1c6563d569 storage1 +C3L-05818.RNA-Seq.genomic.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1e939d5-e92a-4648-947e-f0d153817fbc/333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.genomic.gdc_realn.bam 9352436380 BAM hg38 f1e939d5-e92a-4648-947e-f0d153817fbc storage1 C3L-05818.RNA-Seq.R1.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6692d0fd-d8c6-44be-8d98-642dd6a372be/211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R1_001.fastq.gz 4451676793 FASTQ NA 6692d0fd-d8c6-44be-8d98-642dd6a372be storage1 C3L-05818.RNA-Seq.R2.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10684694-b8f8-4f79-9239-4b736dba2e74/211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R2_001.fastq.gz 4910816086 FASTQ NA 10684694-b8f8-4f79-9239-4b736dba2e74 storage1 +C3L-05818.WGS.Nbc.hg38 C3L-05818 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79f3bf76-08d2-40cc-a261-d303e5d51318/1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wgs_gdc_realn.bam 142810189280 BAM hg38 79f3bf76-08d2-40cc-a261-d303e5d51318 storage1 +C3L-05818.WGS.Tpb.hg38 C3L-05818 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33763a8a-1d39-4242-a314-022ebf386cde/f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wgs_gdc_realn.bam 159950743711 BAM hg38 33763a8a-1d39-4242-a314-022ebf386cde storage1 +C3L-05818.WXS.Nbc.hg38 C3L-05818 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5730c453-4048-4c9e-b10a-06c63400babf/1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wxs_gdc_realn.bam 41111750919 BAM hg38 5730c453-4048-4c9e-b10a-06c63400babf storage1 +C3L-05818.WXS.Tpb.hg38 C3L-05818 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/805544ba-b2c2-4025-acae-b1a7a6c4110f/f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wxs_gdc_realn.bam 30807850895 BAM hg38 805544ba-b2c2-4025-acae-b1a7a6c4110f storage1 +C3L-05819.RNA-Seq.genomic.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7602646f-ab8e-410c-8db2-27ebda35c5e9/8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.genomic.gdc_realn.bam 9245352947 BAM hg38 7602646f-ab8e-410c-8db2-27ebda35c5e9 storage1 C3L-05819.RNA-Seq.R1.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66199b6f-b71a-40a8-94a5-abbdb0b4af76/211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R1_001.fastq.gz 4611330437 FASTQ NA 66199b6f-b71a-40a8-94a5-abbdb0b4af76 storage1 C3L-05819.RNA-Seq.R2.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/205ac3a6-e412-4af0-9756-1e35ba0fd4b3/211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R2_001.fastq.gz 5054971938 FASTQ NA 205ac3a6-e412-4af0-9756-1e35ba0fd4b3 storage1 +C3L-05819.WGS.Nbc.hg38 C3L-05819 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08e4d192-7b7d-4f5a-859f-7a804bca3ddf/2a73ba4a-220b-4987-b302-4e381bb8e4ec_wgs_gdc_realn.bam 137880656738 BAM hg38 08e4d192-7b7d-4f5a-859f-7a804bca3ddf storage1 +C3L-05819.WGS.Tpb.hg38 C3L-05819 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c395cc56-30a7-4f7d-9a6c-33b84e36f2fc/0b13de88-15b7-460b-b48c-42918beb19ab_wgs_gdc_realn.bam 383286033134 BAM hg38 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc storage1 +C3L-05819.WXS.Nbc.hg38 C3L-05819 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08a8f112-a896-4435-bec0-4f7c3081d5c3/2a73ba4a-220b-4987-b302-4e381bb8e4ec_wxs_gdc_realn.bam 34395335551 BAM hg38 08a8f112-a896-4435-bec0-4f7c3081d5c3 storage1 +C3L-05819.WXS.Tpb.hg38 C3L-05819 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09d2c250-7d1b-4ce1-b341-f22b344cc4ec/0b13de88-15b7-460b-b48c-42918beb19ab_wxs_gdc_realn.bam 32072259434 BAM hg38 09d2c250-7d1b-4ce1-b341-f22b344cc4ec storage1 C3L-05848.RNA-Seq.R1.T C3L-05848 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67f23630-5f13-40c2-be70-6a06108da2b8/20210723_P2_G4_WB7988-plate2_S76_R1_001.fastq.gz 6042484243 FASTQ NA 67f23630-5f13-40c2-be70-6a06108da2b8 storage1 C3L-05848.RNA-Seq.R1.T C3L-05848 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a20970a5-0b49-4d46-b295-01241bc3bddf/200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R1_001.fastq.gz 4848554227 FASTQ NA a20970a5-0b49-4d46-b295-01241bc3bddf storage1 C3L-05848.RNA-Seq.R2.T C3L-05848 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1e74ea4-3a49-425b-9958-e27affeb1742/200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R2_001.fastq.gz 5280894738 FASTQ NA a1e74ea4-3a49-425b-9958-e27affeb1742 storage1 @@ -3587,104 +3836,277 @@ C3L-05849.RNA-Seq.R1.T C3L-05849 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active C3L-05849.RNA-Seq.R2.T C3L-05849 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fc90fb6-c5e7-4c8f-b9b0-1f19f87f64d9/200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R2_001.fastq.gz 3754319312 FASTQ NA 5fc90fb6-c5e7-4c8f-b9b0-1f19f87f64d9 storage1 C3L-05849.RNA-Seq.R2.T C3L-05849 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/efa680fe-8c6d-4c23-90d6-36694fce63a4/20210723_P2_A10_WB7988-plate2_S10_R2_001.fastq.gz 10578480756 FASTQ NA efa680fe-8c6d-4c23-90d6-36694fce63a4 storage1 C3L-05861.RNA-Seq.genomic.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84829fb8-0aa9-41ee-b68e-7629113393a4/e23fe7e8-cc5d-4bf2-9716-d8e5ba56e330.rna_seq.genomic.gdc_realn.bam 5922295481 BAM hg38 84829fb8-0aa9-41ee-b68e-7629113393a4 storage1 +C3L-05861.RNA-Seq.genomic.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1107bdb6-dcd6-4339-bcd4-8e4565eae87f/390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.genomic.gdc_realn.bam 5927287767 BAM hg38 1107bdb6-dcd6-4339-bcd4-8e4565eae87f storage1 C3L-05861.RNA-Seq.R1.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/074fab94-27aa-444e-b8c4-f06a6f3cdf3d/210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R1_001.fastq.gz 3187800828 FASTQ NA 074fab94-27aa-444e-b8c4-f06a6f3cdf3d storage1 C3L-05861.RNA-Seq.R2.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a95b940a-0080-4dab-9c33-14af4ecce0ec/210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R2_001.fastq.gz 3400819138 FASTQ NA a95b940a-0080-4dab-9c33-14af4ecce0ec storage1 +C3L-05861.WGS.Nbc.hg38 C3L-05861 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a45b486c-f931-4d85-a7db-ed57d173c8ba/149a73ab-2d7c-4436-9206-445a2c0a0679_wgs_gdc_realn.bam 130807377085 BAM hg38 a45b486c-f931-4d85-a7db-ed57d173c8ba storage1 +C3L-05861.WGS.Tbm.hg38 C3L-05861 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e5f92dc-1661-4759-80cb-565482e59b19/99f098ca-38df-4e75-abb0-48d888a44848_wgs_gdc_realn.bam 143247750678 BAM hg38 6e5f92dc-1661-4759-80cb-565482e59b19 storage1 +C3L-05861.WXS.Nbc.hg38 C3L-05861 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c72348e7-a76b-4ff7-83b6-878245aea7a2/149a73ab-2d7c-4436-9206-445a2c0a0679_wxs_gdc_realn.bam 37481982889 BAM hg38 c72348e7-a76b-4ff7-83b6-878245aea7a2 storage1 +C3L-05861.WXS.Tbm.hg38 C3L-05861 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52cc8fbc-4b54-4783-a429-5ad192823cb0/99f098ca-38df-4e75-abb0-48d888a44848_wxs_gdc_realn.bam 30172099373 BAM hg38 52cc8fbc-4b54-4783-a429-5ad192823cb0 storage1 +C3L-05862.RNA-Seq.genomic.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0686197-8c5b-47af-8622-8affef9d34a4/7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.genomic.gdc_realn.bam 7385049873 BAM hg38 d0686197-8c5b-47af-8622-8affef9d34a4 storage1 C3L-05862.RNA-Seq.R1.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30ae6399-c882-40b1-b4e9-ff2b6b57bb15/211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R1_001.fastq.gz 3427394374 FASTQ NA 30ae6399-c882-40b1-b4e9-ff2b6b57bb15 storage1 C3L-05862.RNA-Seq.R2.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16980c6a-440a-4af7-b908-4daa178678a3/211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R2_001.fastq.gz 3741545345 FASTQ NA 16980c6a-440a-4af7-b908-4daa178678a3 storage1 +C3L-05862.WGS.Nbc.hg38 C3L-05862 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc820c53-59a0-4c02-ad49-62d668703147/a16868eb-a995-49ef-b7de-f279cfbfdbd1_wgs_gdc_realn.bam 135719680184 BAM hg38 cc820c53-59a0-4c02-ad49-62d668703147 storage1 +C3L-05862.WGS.Tpb.hg38 C3L-05862 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd71b842-dcca-436e-bd57-2a4a47945ea1/3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wgs_gdc_realn.bam 133878947429 BAM hg38 dd71b842-dcca-436e-bd57-2a4a47945ea1 storage1 +C3L-05862.WXS.Nbc.hg38 C3L-05862 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59e58410-19e6-4330-b6c9-ebc6df712950/a16868eb-a995-49ef-b7de-f279cfbfdbd1_wxs_gdc_realn.bam 42852083239 BAM hg38 59e58410-19e6-4330-b6c9-ebc6df712950 storage1 +C3L-05862.WXS.Tpb.hg38 C3L-05862 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f81b016a-7298-4e77-a7b1-5627c569d027/3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wxs_gdc_realn.bam 41309502516 BAM hg38 f81b016a-7298-4e77-a7b1-5627c569d027 storage1 +C3L-05865.RNA-Seq.genomic.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93eddf2e-16f7-4056-890c-42b2ccd1278d/017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.genomic.gdc_realn.bam 7411104849 BAM hg38 93eddf2e-16f7-4056-890c-42b2ccd1278d storage1 C3L-05865.RNA-Seq.R1.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5fb6664-71c2-470c-b2f4-924a1a7f756b/220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3596489598 FASTQ NA f5fb6664-71c2-470c-b2f4-924a1a7f756b storage1 C3L-05865.RNA-Seq.R2.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ce9ed2b-d5f6-4f16-bf27-ecb3979e86b6/220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3925737100 FASTQ NA 5ce9ed2b-d5f6-4f16-bf27-ecb3979e86b6 storage1 +C3L-05865.WGS.Nbc.hg38 C3L-05865 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8d3fe3c-d407-4468-9c8b-10842bb7b3e9/8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wgs_gdc_realn.bam 173847752393 BAM hg38 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 storage1 +C3L-05865.WGS.Tbm.hg38 C3L-05865 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76bd6c51-c345-4984-b88a-869c51ebd318/4201cf72-9bd9-43dd-8023-0c74842dca1e_wgs_gdc_realn.bam 393744807400 BAM hg38 76bd6c51-c345-4984-b88a-869c51ebd318 storage1 +C3L-05865.WXS.Nbc.hg38 C3L-05865 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31fed2ee-eb65-40c7-b0ec-29b6473228db/8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wxs_gdc_realn.bam 39006539162 BAM hg38 31fed2ee-eb65-40c7-b0ec-29b6473228db storage1 +C3L-05865.WXS.Tbm.hg38 C3L-05865 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4e40196-62f9-4115-b08c-47b632673cd4/4201cf72-9bd9-43dd-8023-0c74842dca1e_wxs_gdc_realn.bam 41740398964 BAM hg38 f4e40196-62f9-4115-b08c-47b632673cd4 storage1 +C3L-05866.RNA-Seq.genomic.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18803820-5eaf-4248-b491-a699c6669520/76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.genomic.gdc_realn.bam 8707946437 BAM hg38 18803820-5eaf-4248-b491-a699c6669520 storage1 C3L-05866.RNA-Seq.R1.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2735ec95-31b1-4110-8556-01db4b0c338c/220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 4253065889 FASTQ NA 2735ec95-31b1-4110-8556-01db4b0c338c storage1 C3L-05866.RNA-Seq.R2.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2f0fe12-3f34-44cf-ae20-f306271c6117/220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4647798540 FASTQ NA e2f0fe12-3f34-44cf-ae20-f306271c6117 storage1 +C3L-05866.WGS.Nbc.hg38 C3L-05866 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f823e8f-f7ae-4cc6-a260-7e07843b534d/19892a7d-c8ad-42ac-879a-b59be77d2d74_wgs_gdc_realn.bam 140153318879 BAM hg38 7f823e8f-f7ae-4cc6-a260-7e07843b534d storage1 +C3L-05866.WGS.Tbm.hg38 C3L-05866 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cabdf6e7-64e2-4429-87d0-7f95a3c9054f/ce3b7890-d847-48f9-9a91-32c20d88da64_wgs_gdc_realn.bam 131138287954 BAM hg38 cabdf6e7-64e2-4429-87d0-7f95a3c9054f storage1 +C3L-05866.WXS.Nbc.hg38 C3L-05866 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a70ea14c-6e6b-46c1-b114-9c5ff9435f9d/19892a7d-c8ad-42ac-879a-b59be77d2d74_wxs_gdc_realn.bam 38675547780 BAM hg38 a70ea14c-6e6b-46c1-b114-9c5ff9435f9d storage1 +C3L-05866.WXS.Tbm.hg38 C3L-05866 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e295b011-7109-42b0-acaf-10b6943fe584/ce3b7890-d847-48f9-9a91-32c20d88da64_wxs_gdc_realn.bam 34067822652 BAM hg38 e295b011-7109-42b0-acaf-10b6943fe584 storage1 +C3L-05867.RNA-Seq.genomic.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/045dd7e3-1afc-45d3-b4eb-9768b2a1476d/1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.genomic.gdc_realn.bam 7851265611 BAM hg38 045dd7e3-1afc-45d3-b4eb-9768b2a1476d storage1 C3L-05867.RNA-Seq.R1.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f21ddc0-88a2-4e45-b9f7-326107a21ea6/211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R1_001.fastq.gz 3888735161 FASTQ NA 9f21ddc0-88a2-4e45-b9f7-326107a21ea6 storage1 C3L-05867.RNA-Seq.R2.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8eed0e7-ba2c-41c5-880e-6db790f15b69/211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R2_001.fastq.gz 4142355974 FASTQ NA c8eed0e7-ba2c-41c5-880e-6db790f15b69 storage1 +C3L-05867.WXS.Nbc.hg38 C3L-05867 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7f2cc73-9b6f-41b8-8e14-0c7e899a8792/4e0db17d-bd9e-405a-bb3f-f64d30b1941b_wxs_gdc_realn.bam 39048654846 BAM hg38 e7f2cc73-9b6f-41b8-8e14-0c7e899a8792 storage1 +C3L-05867.WXS.Tpb.hg38 C3L-05867 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f03f041-f06d-44f0-945e-95304337b255/27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wxs_gdc_realn.bam 43486815455 BAM hg38 0f03f041-f06d-44f0-945e-95304337b255 storage1 +C3L-05870.RNA-Seq.genomic.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37f9bad3-cef9-4e03-93c7-9e3a80e43255/c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.genomic.gdc_realn.bam 7739050522 BAM hg38 37f9bad3-cef9-4e03-93c7-9e3a80e43255 storage1 C3L-05870.RNA-Seq.R1.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/335a6971-98a0-48a8-9b22-caa10ab05757/211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R1_001.fastq.gz 3687678146 FASTQ NA 335a6971-98a0-48a8-9b22-caa10ab05757 storage1 C3L-05870.RNA-Seq.R2.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7c743d4-69ee-489c-a2be-d7fb39114b7d/211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R2_001.fastq.gz 4012815314 FASTQ NA e7c743d4-69ee-489c-a2be-d7fb39114b7d storage1 +C3L-05870.WGS.Nbc.hg38 C3L-05870 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08dc064e-d5a3-417c-ac3a-562b88329bc9/5c8aba49-4460-440f-9963-1500cb52785a_wgs_gdc_realn.bam 157609906711 BAM hg38 08dc064e-d5a3-417c-ac3a-562b88329bc9 storage1 +C3L-05870.WGS.Tpb.hg38 C3L-05870 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1bd4235b-e682-4fa9-a261-cc25ffa7dd04/4db8c894-62ec-43e6-8e5a-65abb040a80e_wgs_gdc_realn.bam 154828999780 BAM hg38 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 storage1 +C3L-05870.WXS.Nbc.hg38 C3L-05870 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dde74b6b-38ea-4791-9571-2174d6ac026f/5c8aba49-4460-440f-9963-1500cb52785a_wxs_gdc_realn.bam 39685880868 BAM hg38 dde74b6b-38ea-4791-9571-2174d6ac026f storage1 +C3L-05870.WXS.Tpb.hg38 C3L-05870 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f808106f-0df8-4c92-8c51-506d15c9c8df/4db8c894-62ec-43e6-8e5a-65abb040a80e_wxs_gdc_realn.bam 39710169863 BAM hg38 f808106f-0df8-4c92-8c51-506d15c9c8df storage1 C3L-05872.RNA-Seq.genomic.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a501c239-12de-4586-a0de-93a0ba4c8a27/6aab3b59-c02d-4ca0-a235-43d1ceb2d5e5.rna_seq.genomic.gdc_realn.bam 7073588987 BAM hg38 a501c239-12de-4586-a0de-93a0ba4c8a27 storage1 +C3L-05872.RNA-Seq.genomic.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22f6067a-8cbf-45f8-8844-2120baad708f/5f30492c-216e-4678-b667-8603c509423f.rna_seq.genomic.gdc_realn.bam 7085368824 BAM hg38 22f6067a-8cbf-45f8-8844-2120baad708f storage1 C3L-05872.RNA-Seq.R1.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf380f3c-caa7-43f8-bd19-f3f0fe913af7/210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3590502666 FASTQ NA cf380f3c-caa7-43f8-bd19-f3f0fe913af7 storage1 C3L-05872.RNA-Seq.R2.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d5c0aaf-5d4e-44d6-b9d1-6aa6ab92911e/210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 3840232436 FASTQ NA 3d5c0aaf-5d4e-44d6-b9d1-6aa6ab92911e storage1 +C3L-05872.WGS.Nbc.hg38 C3L-05872 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64766b93-1829-4232-a292-eeaf37c967b9/344e5a94-a418-4792-9720-b4951cc25c7d_wgs_gdc_realn.bam 132424783599 BAM hg38 64766b93-1829-4232-a292-eeaf37c967b9 storage1 +C3L-05872.WGS.Tbm.hg38 C3L-05872 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/571c510d-7fcc-40fd-8f1f-905375d8dfcc/d627fc82-0d74-405f-b841-0c0282413f6c_wgs_gdc_realn.bam 193350656603 BAM hg38 571c510d-7fcc-40fd-8f1f-905375d8dfcc storage1 +C3L-05872.WXS.Nbc.hg38 C3L-05872 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fec3d76-e6cd-476c-aede-afaae7821287/344e5a94-a418-4792-9720-b4951cc25c7d_wxs_gdc_realn.bam 57205482721 BAM hg38 2fec3d76-e6cd-476c-aede-afaae7821287 storage1 +C3L-05872.WXS.Tbm.hg38 C3L-05872 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e10bf2cb-d23a-45d4-92a5-13fc8d54d6a4/d627fc82-0d74-405f-b841-0c0282413f6c_wxs_gdc_realn.bam 33646048565 BAM hg38 e10bf2cb-d23a-45d4-92a5-13fc8d54d6a4 storage1 C3L-05874.RNA-Seq.genomic.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cdf08254-c318-45e0-9855-50bc78255ce4/2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.genomic.gdc_realn.bam 7951765513 BAM hg38 cdf08254-c318-45e0-9855-50bc78255ce4 storage1 +C3L-05874.RNA-Seq.genomic.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/627dc136-b579-4f70-8f16-0c27da00d7ad/2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.genomic.gdc_realn.bam 7951765513 BAM hg38 627dc136-b579-4f70-8f16-0c27da00d7ad storage1 C3L-05874.RNA-Seq.R1.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/724820b5-bfc7-4b08-b081-3e10460c82b3/210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R1_001.fastq.gz 3895130520 FASTQ NA 724820b5-bfc7-4b08-b081-3e10460c82b3 storage1 C3L-05874.RNA-Seq.R2.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d76b214f-5d5f-4269-b983-96f4841a00ec/210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R2_001.fastq.gz 4072714684 FASTQ NA d76b214f-5d5f-4269-b983-96f4841a00ec storage1 +C3L-05874.WXS.Nbc.hg38 C3L-05874 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b352b43-0631-44ca-89b8-7501b3514e1b/8002982b-3c17-4e2d-8b6a-eaeb500b3445_wxs_gdc_realn.bam 38857621750 BAM hg38 7b352b43-0631-44ca-89b8-7501b3514e1b storage1 +C3L-05874.WXS.Tbm.hg38 C3L-05874 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2549eabf-0aad-43b3-995c-5b77eab0e11c/3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wxs_gdc_realn.bam 36548244942 BAM hg38 2549eabf-0aad-43b3-995c-5b77eab0e11c storage1 C3L-05877.RNA-Seq.genomic.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66a79ffe-e234-4301-a01f-ad7a90a01ac0/22976012-c45b-42ee-acc5-7e7ffa5c3099.rna_seq.genomic.gdc_realn.bam 8484885432 BAM hg38 66a79ffe-e234-4301-a01f-ad7a90a01ac0 storage1 +C3L-05877.RNA-Seq.genomic.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/811187db-7a30-4df9-8bc0-063fd9718ba5/838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.genomic.gdc_realn.bam 8493804982 BAM hg38 811187db-7a30-4df9-8bc0-063fd9718ba5 storage1 C3L-05877.RNA-Seq.R1.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f08c20b-f789-48d8-9a67-35b47b3e3930/210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4322192784 FASTQ NA 0f08c20b-f789-48d8-9a67-35b47b3e3930 storage1 C3L-05877.RNA-Seq.R2.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d80143d6-e2d1-4d5a-9c37-43b0e76a67c0/210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 4568649533 FASTQ NA d80143d6-e2d1-4d5a-9c37-43b0e76a67c0 storage1 +C3L-05877.WGS.Nbc.hg38 C3L-05877 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0dcc0454-f17b-4951-9437-ff2891e22852/ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wgs_gdc_realn.bam 237016842730 BAM hg38 0dcc0454-f17b-4951-9437-ff2891e22852 storage1 +C3L-05877.WGS.Tbm.hg38 C3L-05877 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b158bbad-df67-4297-970f-9186bbc0a2bd/96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wgs_gdc_realn.bam 130777638996 BAM hg38 b158bbad-df67-4297-970f-9186bbc0a2bd storage1 +C3L-05877.WXS.Nbc.hg38 C3L-05877 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab66af5d-bf06-4441-ab13-d8941065731f/ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wxs_gdc_realn.bam 33591352662 BAM hg38 ab66af5d-bf06-4441-ab13-d8941065731f storage1 +C3L-05877.WXS.Tbm.hg38 C3L-05877 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e37b97d2-8631-476e-9356-94c4ed5a2785/96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wxs_gdc_realn.bam 34726300762 BAM hg38 e37b97d2-8631-476e-9356-94c4ed5a2785 storage1 +C3L-05880.RNA-Seq.genomic.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58d498d3-e490-4480-80c7-e26b409670e0/8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.genomic.gdc_realn.bam 8383882658 BAM hg38 58d498d3-e490-4480-80c7-e26b409670e0 storage1 C3L-05880.RNA-Seq.R1.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b341d34c-1191-4519-a1ff-d26521ec8bfd/211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4087361180 FASTQ NA b341d34c-1191-4519-a1ff-d26521ec8bfd storage1 C3L-05880.RNA-Seq.R2.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbbd3158-1f70-48a7-8e50-fda147c3d932/211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4475045150 FASTQ NA cbbd3158-1f70-48a7-8e50-fda147c3d932 storage1 +C3L-05880.WGS.Nbc.hg38 C3L-05880 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4668566-e4f8-46a6-af3b-1879baa49290/23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wgs_gdc_realn.bam 137911406384 BAM hg38 a4668566-e4f8-46a6-af3b-1879baa49290 storage1 +C3L-05880.WGS.Tbm.hg38 C3L-05880 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf8ecffe-50b1-4149-9c3e-294b32a0e7a3/0ba49a29-a850-46e3-8379-1375fe76413d_wgs_gdc_realn.bam 132428942056 BAM hg38 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 storage1 +C3L-05880.WXS.Nbc.hg38 C3L-05880 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d7b0de8-3536-4785-af8d-c428b67982f7/23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wxs_gdc_realn.bam 111884501127 BAM hg38 7d7b0de8-3536-4785-af8d-c428b67982f7 storage1 +C3L-05880.WXS.Tbm.hg38 C3L-05880 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f8c7af6-b9f4-4da1-a2a4-550334839d0c/0ba49a29-a850-46e3-8379-1375fe76413d_wxs_gdc_realn.bam 35030256301 BAM hg38 5f8c7af6-b9f4-4da1-a2a4-550334839d0c storage1 +C3L-05884.RNA-Seq.genomic.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca2d8f30-3dd9-4088-a068-75cde7b04001/e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.genomic.gdc_realn.bam 8114158812 BAM hg38 ca2d8f30-3dd9-4088-a068-75cde7b04001 storage1 C3L-05884.RNA-Seq.R1.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68dcca5d-e353-4166-a863-6f0b745448c0/210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3984639573 FASTQ NA 68dcca5d-e353-4166-a863-6f0b745448c0 storage1 C3L-05884.RNA-Seq.R2.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8974040-12ad-4bea-901a-dfa36fb0c963/210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4205384530 FASTQ NA c8974040-12ad-4bea-901a-dfa36fb0c963 storage1 +C3L-05884.WGS.Nbc.hg38 C3L-05884 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0872d590-4c7c-4270-879e-d60630f04982/5cf52825-963d-462b-b1a5-d9f20ddd0070_wgs_gdc_realn.bam 157604592406 BAM hg38 0872d590-4c7c-4270-879e-d60630f04982 storage1 +C3L-05884.WGS.Tbm.hg38 C3L-05884 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/766dc870-eef3-4df7-88ef-16e5b7950943/7ef878e6-9ca3-40d7-9948-5af073b483f5_wgs_gdc_realn.bam 157014991953 BAM hg38 766dc870-eef3-4df7-88ef-16e5b7950943 storage1 +C3L-05884.WXS.Nbc.hg38 C3L-05884 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16ae679b-5354-4ed5-abe4-a1b9d49a4ffc/5cf52825-963d-462b-b1a5-d9f20ddd0070_wxs_gdc_realn.bam 47895435122 BAM hg38 16ae679b-5354-4ed5-abe4-a1b9d49a4ffc storage1 +C3L-05884.WXS.Tbm.hg38 C3L-05884 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53aff95c-11f2-407f-91cd-b594b0e4eed0/7ef878e6-9ca3-40d7-9948-5af073b483f5_wxs_gdc_realn.bam 29114913369 BAM hg38 53aff95c-11f2-407f-91cd-b594b0e4eed0 storage1 C3L-05887.RNA-Seq.genomic.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81320521-9542-4930-9474-a46f7f79afcc/406e10b3-3e4d-430f-8ef0-8b2cfd9d7263.rna_seq.genomic.gdc_realn.bam 8294685854 BAM hg38 81320521-9542-4930-9474-a46f7f79afcc storage1 +C3L-05887.RNA-Seq.genomic.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/453d0933-20e4-49f2-bf23-58a8cee9ae66/b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.genomic.gdc_realn.bam 8302648692 BAM hg38 453d0933-20e4-49f2-bf23-58a8cee9ae66 storage1 C3L-05887.RNA-Seq.R1.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69cc26b8-f6df-4410-85ad-9a0e45e0eed5/210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R1_001.fastq.gz 4098545183 FASTQ NA 69cc26b8-f6df-4410-85ad-9a0e45e0eed5 storage1 C3L-05887.RNA-Seq.R2.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5b69001-5416-4cab-895c-b6bb1a523790/210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R2_001.fastq.gz 4435158903 FASTQ NA e5b69001-5416-4cab-895c-b6bb1a523790 storage1 +C3L-05887.WGS.Nbc.hg38 C3L-05887 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbebe5b3-751c-418b-92ca-7a2e95782be0/e28e0b54-03a7-4cfb-b77b-447b8646961a_wgs_gdc_realn.bam 187159088869 BAM hg38 dbebe5b3-751c-418b-92ca-7a2e95782be0 storage1 +C3L-05887.WGS.Tbm.hg38 C3L-05887 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e4e94e7-8082-469d-a621-8f506bead92f/236e12c7-1408-4460-acaa-69762ebc953a_wgs_gdc_realn.bam 155566422748 BAM hg38 4e4e94e7-8082-469d-a621-8f506bead92f storage1 +C3L-05887.WXS.Nbc.hg38 C3L-05887 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b508e0fe-9f8a-4166-9bc8-70df9fac94df/e28e0b54-03a7-4cfb-b77b-447b8646961a_wxs_gdc_realn.bam 34770032401 BAM hg38 b508e0fe-9f8a-4166-9bc8-70df9fac94df storage1 +C3L-05887.WXS.Tbm.hg38 C3L-05887 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7cf2849-de68-4c42-bb9c-30885885427c/236e12c7-1408-4460-acaa-69762ebc953a_wxs_gdc_realn.bam 32462973279 BAM hg38 f7cf2849-de68-4c42-bb9c-30885885427c storage1 C3L-05888.RNA-Seq.genomic.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbecd1d0-401e-4062-9cc2-12a4ede2d9e4/c7cc36af-49e9-47fb-85fa-fcf2a804a669.rna_seq.genomic.gdc_realn.bam 9099287070 BAM hg38 fbecd1d0-401e-4062-9cc2-12a4ede2d9e4 storage1 +C3L-05888.RNA-Seq.genomic.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b33c67d4-8d2c-44c8-bcd4-b7bafe7ffc5c/69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.genomic.gdc_realn.bam 9110093573 BAM hg38 b33c67d4-8d2c-44c8-bcd4-b7bafe7ffc5c storage1 C3L-05888.RNA-Seq.R1.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7cdc741d-0a64-4e81-938a-cc4297d7cc3d/210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R1_001.fastq.gz 4554756978 FASTQ NA 7cdc741d-0a64-4e81-938a-cc4297d7cc3d storage1 C3L-05888.RNA-Seq.R2.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b44d08b-a40e-42d2-a682-ace4760bc581/210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R2_001.fastq.gz 4720793096 FASTQ NA 0b44d08b-a40e-42d2-a682-ace4760bc581 storage1 +C3L-05888.WGS.Nbc.hg38 C3L-05888 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c758b3c-100a-4699-abc1-60fea47b26ce/5aa5467c-5b5b-4942-9207-8575275e8d48_wgs_gdc_realn.bam 189300363263 BAM hg38 6c758b3c-100a-4699-abc1-60fea47b26ce storage1 +C3L-05888.WGS.Tbm.hg38 C3L-05888 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d979e9f-8895-43ac-b026-82da5d317b60/8fbfc62b-debd-49af-a0d1-0d1f015896af_wgs_gdc_realn.bam 134774007299 BAM hg38 1d979e9f-8895-43ac-b026-82da5d317b60 storage1 +C3L-05888.WXS.Nbc.hg38 C3L-05888 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5726129-0842-47aa-a1c1-7b866092f086/5aa5467c-5b5b-4942-9207-8575275e8d48_wxs_gdc_realn.bam 32066544877 BAM hg38 e5726129-0842-47aa-a1c1-7b866092f086 storage1 +C3L-05888.WXS.Tbm.hg38 C3L-05888 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ac69ed6-88e0-4fc5-bb80-03714c5ae76a/8fbfc62b-debd-49af-a0d1-0d1f015896af_wxs_gdc_realn.bam 57687022271 BAM hg38 8ac69ed6-88e0-4fc5-bb80-03714c5ae76a storage1 C3L-05889.RNA-Seq.genomic.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ab57d9b-905a-4832-9dc5-93c4d0de386f/804a33b0-f76d-4f5e-a8fe-b8da0fc8936d.rna_seq.genomic.gdc_realn.bam 8106147389 BAM hg38 7ab57d9b-905a-4832-9dc5-93c4d0de386f storage1 +C3L-05889.RNA-Seq.genomic.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/783b6efd-67bd-4ad8-867c-c32baf366ccb/04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.genomic.gdc_realn.bam 8120164666 BAM hg38 783b6efd-67bd-4ad8-867c-c32baf366ccb storage1 C3L-05889.RNA-Seq.R1.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/334cd644-7914-4240-bced-4eb5fd48ef08/210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R1_001.fastq.gz 3804400016 FASTQ NA 334cd644-7914-4240-bced-4eb5fd48ef08 storage1 C3L-05889.RNA-Seq.R2.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1e0bf27-ddd9-4980-adaa-d01489605419/210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R2_001.fastq.gz 4114619098 FASTQ NA a1e0bf27-ddd9-4980-adaa-d01489605419 storage1 +C3L-05889.WGS.Nbc.hg38 C3L-05889 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da5f49f1-d186-45bd-915a-227329e8b998/9ac06998-0508-4229-bdbe-f688ad33ec5d_wgs_gdc_realn.bam 168276376890 BAM hg38 da5f49f1-d186-45bd-915a-227329e8b998 storage1 +C3L-05889.WGS.Tbm.hg38 C3L-05889 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75ed27c4-40d0-4082-9acf-9a19fd96b6df/91a44851-93b5-4106-a7d2-43bfd9061fdd_wgs_gdc_realn.bam 148289296675 BAM hg38 75ed27c4-40d0-4082-9acf-9a19fd96b6df storage1 +C3L-05889.WXS.Nbc.hg38 C3L-05889 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1688311-f146-494c-8e4e-49a7a3ded2e4/9ac06998-0508-4229-bdbe-f688ad33ec5d_wxs_gdc_realn.bam 35893960347 BAM hg38 a1688311-f146-494c-8e4e-49a7a3ded2e4 storage1 +C3L-05889.WXS.Tbm.hg38 C3L-05889 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1148e441-9e4c-4933-ba8c-a74739c59cd6/91a44851-93b5-4106-a7d2-43bfd9061fdd_wxs_gdc_realn.bam 29487886716 BAM hg38 1148e441-9e4c-4933-ba8c-a74739c59cd6 storage1 C3L-05891.RNA-Seq.genomic.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e049b37-8534-4dd3-a4e1-a7cfb8348377/fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.genomic.gdc_realn.bam 7414092079 BAM hg38 6e049b37-8534-4dd3-a4e1-a7cfb8348377 storage1 +C3L-05891.RNA-Seq.genomic.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70ea5557-22d3-4350-803e-a4c170565909/fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.genomic.gdc_realn.bam 7414092079 BAM hg38 70ea5557-22d3-4350-803e-a4c170565909 storage1 C3L-05891.RNA-Seq.R1.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e9c334a-180d-4890-820b-7cd231323293/210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R1_001.fastq.gz 3742419259 FASTQ NA 5e9c334a-180d-4890-820b-7cd231323293 storage1 C3L-05891.RNA-Seq.R2.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f95d192-8eb5-40a0-9b25-678d8ccd5016/210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R2_001.fastq.gz 3937724088 FASTQ NA 2f95d192-8eb5-40a0-9b25-678d8ccd5016 storage1 +C3L-05891.WGS.Nbc.hg38 C3L-05891 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa5e5bd5-4de1-4fc8-9900-db318dd44574/0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wgs_gdc_realn.bam 196247280574 BAM hg38 aa5e5bd5-4de1-4fc8-9900-db318dd44574 storage1 +C3L-05891.WGS.Tbm.hg38 C3L-05891 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f9777c6-debb-46c5-a695-f9d04ec1236c/e06dcccc-bd53-41b6-815e-5ac4e351fa97_wgs_gdc_realn.bam 152372269151 BAM hg38 9f9777c6-debb-46c5-a695-f9d04ec1236c storage1 +C3L-05891.WXS.Nbc.hg38 C3L-05891 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08dfa21d-c21b-4a87-8285-94d4978a4cbc/0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wxs_gdc_realn.bam 46274197322 BAM hg38 08dfa21d-c21b-4a87-8285-94d4978a4cbc storage1 +C3L-05891.WXS.Tbm.hg38 C3L-05891 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8855cd6-e357-4889-b201-d59dd9e8e6f5/e06dcccc-bd53-41b6-815e-5ac4e351fa97_wxs_gdc_realn.bam 36023652593 BAM hg38 e8855cd6-e357-4889-b201-d59dd9e8e6f5 storage1 C3L-05892.RNA-Seq.genomic.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ce4dff82-f24a-4bec-809a-a31ad5237acd/94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.genomic.gdc_realn.bam 8980071101 BAM hg38 ce4dff82-f24a-4bec-809a-a31ad5237acd storage1 +C3L-05892.RNA-Seq.genomic.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b168c5b2-9699-49ae-b592-298d708521e2/94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.genomic.gdc_realn.bam 8980071101 BAM hg38 b168c5b2-9699-49ae-b592-298d708521e2 storage1 C3L-05892.RNA-Seq.R1.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28189eba-fc3b-47fa-ac61-71b9c3fe1e29/210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3856451427 FASTQ NA 28189eba-fc3b-47fa-ac61-71b9c3fe1e29 storage1 C3L-05892.RNA-Seq.R2.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/624dee72-97d3-4fe3-9653-94dd0f19793d/210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 4224582460 FASTQ NA 624dee72-97d3-4fe3-9653-94dd0f19793d storage1 +C3L-05892.WXS.Nbc.hg38 C3L-05892 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d5719fd-0d06-4185-9d13-ed1195d72fc4/3bc743d0-e149-46ec-a307-fc027b6b2a97_wxs_gdc_realn.bam 40930894212 BAM hg38 1d5719fd-0d06-4185-9d13-ed1195d72fc4 storage1 +C3L-05892.WXS.Tbm.hg38 C3L-05892 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00b3b841-4dae-4d1d-b106-f15c7d50fcc9/6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wxs_gdc_realn.bam 32184558939 BAM hg38 00b3b841-4dae-4d1d-b106-f15c7d50fcc9 storage1 C3L-05894.RNA-Seq.genomic.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27bdb61d-b684-41c9-99a1-04919370effe/6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.genomic.gdc_realn.bam 7169723181 BAM hg38 27bdb61d-b684-41c9-99a1-04919370effe storage1 +C3L-05894.RNA-Seq.genomic.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27b0299f-d71f-47d7-aaa6-0725b9694482/6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.genomic.gdc_realn.bam 7169723181 BAM hg38 27b0299f-d71f-47d7-aaa6-0725b9694482 storage1 C3L-05894.RNA-Seq.R1.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/856e135f-034f-44f6-821f-65ac85cf7475/210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3647790340 FASTQ NA 856e135f-034f-44f6-821f-65ac85cf7475 storage1 C3L-05894.RNA-Seq.R2.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50c8b190-4ce0-4bb4-8dc0-b1daf098b6af/210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3869227268 FASTQ NA 50c8b190-4ce0-4bb4-8dc0-b1daf098b6af storage1 +C3L-05894.WXS.Nbc.hg38 C3L-05894 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1a46f9f-2e3b-482c-a95e-6c04ff1de4b7/3b5bd451-95b6-42e1-b037-2254c5302c95_wxs_gdc_realn.bam 30200452871 BAM hg38 e1a46f9f-2e3b-482c-a95e-6c04ff1de4b7 storage1 +C3L-05894.WXS.Tbm.hg38 C3L-05894 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c615455d-4137-4d2d-a581-25ec5cc8b0d7/8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wxs_gdc_realn.bam 33553658365 BAM hg38 c615455d-4137-4d2d-a581-25ec5cc8b0d7 storage1 +C3L-05896.RNA-Seq.genomic.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/447ec45c-a31e-41ef-83f2-8a755213f942/0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.genomic.gdc_realn.bam 8645804622 BAM hg38 447ec45c-a31e-41ef-83f2-8a755213f942 storage1 C3L-05896.RNA-Seq.R1.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/311f9869-14ad-4d89-a131-5d510c836065/211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R1_001.fastq.gz 4244493510 FASTQ NA 311f9869-14ad-4d89-a131-5d510c836065 storage1 C3L-05896.RNA-Seq.R2.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f023f41-7b84-4b3d-bb5e-85fae3e0d179/211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R2_001.fastq.gz 4581900123 FASTQ NA 7f023f41-7b84-4b3d-bb5e-85fae3e0d179 storage1 +C3L-05896.WGS.Nbc.hg38 C3L-05896 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80234ef6-f17c-4840-ae61-720e520c53ee/a8787364-b796-4765-9d33-4704430f6803_wgs_gdc_realn.bam 149874320363 BAM hg38 80234ef6-f17c-4840-ae61-720e520c53ee storage1 +C3L-05896.WGS.Tbm.hg38 C3L-05896 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7/289d953c-baea-4aae-9b01-3cff1fd8464f_wgs_gdc_realn.bam 143146606316 BAM hg38 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 storage1 +C3L-05896.WXS.Nbc.hg38 C3L-05896 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cb56b61-4615-4065-aedb-ac4019618f66/a8787364-b796-4765-9d33-4704430f6803_wxs_gdc_realn.bam 35527659437 BAM hg38 5cb56b61-4615-4065-aedb-ac4019618f66 storage1 +C3L-05896.WXS.Tbm.hg38 C3L-05896 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36fc5398-69bf-40ee-8769-44aed38629be/289d953c-baea-4aae-9b01-3cff1fd8464f_wxs_gdc_realn.bam 38735747297 BAM hg38 36fc5398-69bf-40ee-8769-44aed38629be storage1 +C3L-05898.RNA-Seq.genomic.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f442cd7-85fc-41de-8598-455bdae60199/1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.genomic.gdc_realn.bam 8286664583 BAM hg38 7f442cd7-85fc-41de-8598-455bdae60199 storage1 C3L-05898.RNA-Seq.R1.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/13dade3a-17ec-4dcc-b306-27c6c282aebd/211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R1_001.fastq.gz 3654511623 FASTQ NA 13dade3a-17ec-4dcc-b306-27c6c282aebd storage1 C3L-05898.RNA-Seq.R2.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6717aa61-9187-4996-ae44-d79dd6e1b16d/211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R2_001.fastq.gz 3974470097 FASTQ NA 6717aa61-9187-4996-ae44-d79dd6e1b16d storage1 +C3L-05898.WXS.Nbc.hg38 C3L-05898 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c207cee2-93ef-463d-aec6-ceaf6b131c3f/ac06d127-7ee9-460f-88e8-dad1bc7b8f8a_wxs_gdc_realn.bam 32893244271 BAM hg38 c207cee2-93ef-463d-aec6-ceaf6b131c3f storage1 +C3L-05898.WXS.Tbm.hg38 C3L-05898 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4528565c-d11e-46b6-815c-17e44f7f1859/7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wxs_gdc_realn.bam 39906623067 BAM hg38 4528565c-d11e-46b6-815c-17e44f7f1859 storage1 +C3L-05905.RNA-Seq.genomic.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38198b6b-ea5a-4e77-a33d-c73cdf816e72/2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.genomic.gdc_realn.bam 6780800175 BAM hg38 38198b6b-ea5a-4e77-a33d-c73cdf816e72 storage1 C3L-05905.RNA-Seq.R1.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fe72174-8147-453f-b08b-0502d721e5f0/211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R1_001.fastq.gz 3429429812 FASTQ NA 7fe72174-8147-453f-b08b-0502d721e5f0 storage1 C3L-05905.RNA-Seq.R2.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78fb450b-4932-417a-8a7b-c7a93b7ac885/211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R2_001.fastq.gz 3739804390 FASTQ NA 78fb450b-4932-417a-8a7b-c7a93b7ac885 storage1 +C3L-05905.WGS.Nbc.hg38 C3L-05905 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3356d52-443e-430b-b183-c2255a34aee4/06063016-e53a-44ae-bdcc-6a49f310d450_wgs_gdc_realn.bam 144563530355 BAM hg38 f3356d52-443e-430b-b183-c2255a34aee4 storage1 +C3L-05905.WGS.Tpb.hg38 C3L-05905 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10d9505e-54f3-4fda-8d41-9397231019b3/3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wgs_gdc_realn.bam 148184199354 BAM hg38 10d9505e-54f3-4fda-8d41-9397231019b3 storage1 +C3L-05905.WXS.Nbc.hg38 C3L-05905 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f32fb5f4-b57f-4fff-93bd-2ddcc99f3480/06063016-e53a-44ae-bdcc-6a49f310d450_wxs_gdc_realn.bam 31688360670 BAM hg38 f32fb5f4-b57f-4fff-93bd-2ddcc99f3480 storage1 +C3L-05905.WXS.Tpb.hg38 C3L-05905 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72d9a24e-0d39-4ee4-8352-596c34431cbb/3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wxs_gdc_realn.bam 32772271390 BAM hg38 72d9a24e-0d39-4ee4-8352-596c34431cbb storage1 C3L-05907.RNA-Seq.genomic.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f431f40-6233-4484-8956-d6d2c5d06ea4/1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.genomic.gdc_realn.bam 7138980630 BAM hg38 0f431f40-6233-4484-8956-d6d2c5d06ea4 storage1 +C3L-05907.RNA-Seq.genomic.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/056e8013-b590-4e72-9fd8-acb3e3165ae3/1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.genomic.gdc_realn.bam 7138980630 BAM hg38 056e8013-b590-4e72-9fd8-acb3e3165ae3 storage1 C3L-05907.RNA-Seq.R1.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1b09891-6cfe-4899-b6c7-0c6286252c8f/210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 3641688186 FASTQ NA e1b09891-6cfe-4899-b6c7-0c6286252c8f storage1 C3L-05907.RNA-Seq.R2.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fe7fe10-f336-4191-bc15-6b18a17733e6/210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 3798003850 FASTQ NA 6fe7fe10-f336-4191-bc15-6b18a17733e6 storage1 +C3L-05907.WXS.Nbc.hg38 C3L-05907 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a144f235-3dd9-49e5-9645-78f7d893cc8c/429db6f5-16c6-4aa1-925b-33d2715bb17e_wxs_gdc_realn.bam 34667825715 BAM hg38 a144f235-3dd9-49e5-9645-78f7d893cc8c storage1 +C3L-05907.WXS.Tbm.hg38 C3L-05907 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/feddb0fb-240c-4623-8b66-abfbde61da17/efc001f4-8713-47be-bd13-d1b3a5bee982_wxs_gdc_realn.bam 36332508702 BAM hg38 feddb0fb-240c-4623-8b66-abfbde61da17 storage1 C3L-05908.RNA-Seq.genomic.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d07791b-6fab-48b8-9efc-e63a227561ba/2f647ca1-5f6e-4245-b25c-21e03ce4f59f.rna_seq.genomic.gdc_realn.bam 7360414484 BAM hg38 2d07791b-6fab-48b8-9efc-e63a227561ba storage1 +C3L-05908.RNA-Seq.genomic.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b26fd17-3b35-4805-857c-9e7e646498a3/838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.genomic.gdc_realn.bam 7366577667 BAM hg38 9b26fd17-3b35-4805-857c-9e7e646498a3 storage1 C3L-05908.RNA-Seq.R1.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e1c76c8-7de2-4fd1-9057-cf88ed5ea0d2/210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R1_001.fastq.gz 3657355336 FASTQ NA 0e1c76c8-7de2-4fd1-9057-cf88ed5ea0d2 storage1 C3L-05908.RNA-Seq.R2.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9aba5117-7ae3-416e-880d-7b1136939ec6/210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R2_001.fastq.gz 3952540450 FASTQ NA 9aba5117-7ae3-416e-880d-7b1136939ec6 storage1 +C3L-05908.WGS.Nbc.hg38 C3L-05908 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7bef082d-803e-45b2-b53e-5a1399bf1b5c/c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wgs_gdc_realn.bam 156212712773 BAM hg38 7bef082d-803e-45b2-b53e-5a1399bf1b5c storage1 +C3L-05908.WGS.Tbm.hg38 C3L-05908 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb0e880d-d80c-4380-87d3-ee42c919d1cb/abca2316-f4ce-44b2-8fbb-13e395181439_wgs_gdc_realn.bam 141851528279 BAM hg38 bb0e880d-d80c-4380-87d3-ee42c919d1cb storage1 +C3L-05908.WXS.Nbc.hg38 C3L-05908 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75eb2cb6-1dc2-4830-8a38-415e4fe1d03c/c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wxs_gdc_realn.bam 35730190416 BAM hg38 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c storage1 +C3L-05908.WXS.Tbm.hg38 C3L-05908 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24bc77be-7a63-4942-a438-31028cc4fea9/abca2316-f4ce-44b2-8fbb-13e395181439_wxs_gdc_realn.bam 29849365051 BAM hg38 24bc77be-7a63-4942-a438-31028cc4fea9 storage1 C3L-06061.RNA-Seq.genomic.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00fec3b0-7f96-46ab-95c8-73631229c43c/41b22bab-2184-414a-8c88-0cd7e4bfa063.rna_seq.genomic.gdc_realn.bam 8048864092 BAM hg38 00fec3b0-7f96-46ab-95c8-73631229c43c storage1 +C3L-06061.RNA-Seq.genomic.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/045dbae3-457c-4f47-b108-2c57b4d6831e/5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.genomic.gdc_realn.bam 8059507252 BAM hg38 045dbae3-457c-4f47-b108-2c57b4d6831e storage1 C3L-06061.RNA-Seq.R1.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/005d06a5-42a7-4ea5-ba2a-9bbbf8295f42/210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R1_001.fastq.gz 3980290410 FASTQ NA 005d06a5-42a7-4ea5-ba2a-9bbbf8295f42 storage1 C3L-06061.RNA-Seq.R2.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f38d303-fb14-433f-8cc2-b6ea37044a4f/210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R2_001.fastq.gz 4233823990 FASTQ NA 8f38d303-fb14-433f-8cc2-b6ea37044a4f storage1 +C3L-06061.WGS.Nbc.hg38 C3L-06061 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3aa2183-2a2b-49cb-94aa-722bb084d738/d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wgs_gdc_realn.bam 133685404348 BAM hg38 d3aa2183-2a2b-49cb-94aa-722bb084d738 storage1 +C3L-06061.WGS.Tbm.hg38 C3L-06061 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df2b1538-16cb-4e8b-8347-592204bd6de2/c1ddcce6-a66e-47be-a293-652a21b03956_wgs_gdc_realn.bam 127949661212 BAM hg38 df2b1538-16cb-4e8b-8347-592204bd6de2 storage1 +C3L-06061.WXS.Nbc.hg38 C3L-06061 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/070f59df-e71c-4c18-b973-c155ce3a5387/d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wxs_gdc_realn.bam 43881323457 BAM hg38 070f59df-e71c-4c18-b973-c155ce3a5387 storage1 +C3L-06061.WXS.Tbm.hg38 C3L-06061 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66892cd4-c8b6-433a-9324-1051b3fb8b30/c1ddcce6-a66e-47be-a293-652a21b03956_wxs_gdc_realn.bam 34828076310 BAM hg38 66892cd4-c8b6-433a-9324-1051b3fb8b30 storage1 C3L-06063.RNA-Seq.genomic.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c6405e9-18cb-4880-a584-c42528ac2de7/a44963f2-c172-409d-8830-79c382eb880a.rna_seq.genomic.gdc_realn.bam 7538153889 BAM hg38 8c6405e9-18cb-4880-a584-c42528ac2de7 storage1 +C3L-06063.RNA-Seq.genomic.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86dd292a-526f-4a8c-844d-472f4311032c/f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.genomic.gdc_realn.bam 7549097441 BAM hg38 86dd292a-526f-4a8c-844d-472f4311032c storage1 C3L-06063.RNA-Seq.R1.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cea7d79a-f245-4cff-adc5-8b40e27d01ff/210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R1_001.fastq.gz 3718330896 FASTQ NA cea7d79a-f245-4cff-adc5-8b40e27d01ff storage1 C3L-06063.RNA-Seq.R2.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0b88942-9ee9-4d23-ac4a-1f6f6c466fd6/210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R2_001.fastq.gz 4003836171 FASTQ NA d0b88942-9ee9-4d23-ac4a-1f6f6c466fd6 storage1 +C3L-06063.WGS.Nbc.hg38 C3L-06063 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3d51cee-b87d-49f6-ab1d-58196bb20849/72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wgs_gdc_realn.bam 162794371517 BAM hg38 b3d51cee-b87d-49f6-ab1d-58196bb20849 storage1 +C3L-06063.WGS.Tbm.hg38 C3L-06063 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8f9b051-60b0-4579-b572-7b85f6a049e9/604ee056-6daa-49f6-a5d1-b008305502b6_wgs_gdc_realn.bam 150586264993 BAM hg38 e8f9b051-60b0-4579-b572-7b85f6a049e9 storage1 +C3L-06063.WXS.Nbc.hg38 C3L-06063 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa330441-41ff-469b-ace7-099764cd0d6a/72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wxs_gdc_realn.bam 36806573391 BAM hg38 aa330441-41ff-469b-ace7-099764cd0d6a storage1 +C3L-06063.WXS.Tbm.hg38 C3L-06063 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91a0f789-f4cd-444a-b0d2-da59c69fb392/604ee056-6daa-49f6-a5d1-b008305502b6_wxs_gdc_realn.bam 32733625918 BAM hg38 91a0f789-f4cd-444a-b0d2-da59c69fb392 storage1 C3L-06064.RNA-Seq.genomic.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53d9d693-1800-4c91-b3f3-ed1d17ea4a18/155464e2-11dc-40c5-856b-8f8fe248a83d.rna_seq.genomic.gdc_realn.bam 7566507758 BAM hg38 53d9d693-1800-4c91-b3f3-ed1d17ea4a18 storage1 +C3L-06064.RNA-Seq.genomic.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89cf57d1-1d1b-4456-8578-fa898a5a053f/5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.genomic.gdc_realn.bam 7576158382 BAM hg38 89cf57d1-1d1b-4456-8578-fa898a5a053f storage1 C3L-06064.RNA-Seq.R1.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dca6015e-b9bf-4f95-bc57-dd1dcf9c8df6/210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R1_001.fastq.gz 3804957009 FASTQ NA dca6015e-b9bf-4f95-bc57-dd1dcf9c8df6 storage1 C3L-06064.RNA-Seq.R2.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5178138-97f9-4d77-8c44-2497d38911dc/210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R2_001.fastq.gz 4107726492 FASTQ NA a5178138-97f9-4d77-8c44-2497d38911dc storage1 +C3L-06064.WGS.Nbc.hg38 C3L-06064 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7599d97-a30f-463f-82c9-b3f8dfc5abbe/6455cf06-0477-4d1e-b874-c5886e4e1137_wgs_gdc_realn.bam 148389243797 BAM hg38 c7599d97-a30f-463f-82c9-b3f8dfc5abbe storage1 +C3L-06064.WGS.Tbm.hg38 C3L-06064 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57ed6f78-7ead-42e1-91d1-8922419b163c/0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wgs_gdc_realn.bam 179277085556 BAM hg38 57ed6f78-7ead-42e1-91d1-8922419b163c storage1 +C3L-06064.WXS.Nbc.hg38 C3L-06064 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/102d71ec-b7c0-4996-a48f-84e52499162d/6455cf06-0477-4d1e-b874-c5886e4e1137_wxs_gdc_realn.bam 38310534027 BAM hg38 102d71ec-b7c0-4996-a48f-84e52499162d storage1 +C3L-06064.WXS.Tbm.hg38 C3L-06064 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f021375-1a8e-4d1b-afb1-87fdf2a37bb2/0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wxs_gdc_realn.bam 37309780760 BAM hg38 6f021375-1a8e-4d1b-afb1-87fdf2a37bb2 storage1 C3L-06066.RNA-Seq.genomic.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4775ddc8-4749-4e50-a344-3e4bb79519f4/92d50e82-e474-4065-959f-8f9bc7df4f27.rna_seq.genomic.gdc_realn.bam 9123422305 BAM hg38 4775ddc8-4749-4e50-a344-3e4bb79519f4 storage1 +C3L-06066.RNA-Seq.genomic.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1acb2c3-ee3e-4163-844b-2168eb39c07f/75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.genomic.gdc_realn.bam 9156038467 BAM hg38 f1acb2c3-ee3e-4163-844b-2168eb39c07f storage1 C3L-06066.RNA-Seq.R1.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aca652c7-2628-4911-b25c-6c1796845e9f/210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3526785750 FASTQ NA aca652c7-2628-4911-b25c-6c1796845e9f storage1 C3L-06066.RNA-Seq.R2.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbe87ee5-b45b-41f0-9a70-0b3ed678013a/210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3869519987 FASTQ NA cbe87ee5-b45b-41f0-9a70-0b3ed678013a storage1 +C3L-06066.WGS.Nbc.hg38 C3L-06066 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f015cef4-ab99-40e9-8dcc-17dd4af0bbb4/715ad9e3-20b9-4d61-ac08-9e270e702221_wgs_gdc_realn.bam 187368132645 BAM hg38 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 storage1 +C3L-06066.WGS.Tbm.hg38 C3L-06066 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef8c9afd-27b8-4c74-abda-f2a080cbe817/d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wgs_gdc_realn.bam 141804091849 BAM hg38 ef8c9afd-27b8-4c74-abda-f2a080cbe817 storage1 C3L-06067.RNA-Seq.genomic.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/26c39cee-f525-4de5-974f-09d260496300/c204c232-a476-4dba-91e7-60cfb711895a.rna_seq.genomic.gdc_realn.bam 5784385452 BAM hg38 26c39cee-f525-4de5-974f-09d260496300 storage1 +C3L-06067.RNA-Seq.genomic.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76fdcab6-4430-4d0f-8ce3-b9a9f8b2e543/e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.genomic.gdc_realn.bam 5793716140 BAM hg38 76fdcab6-4430-4d0f-8ce3-b9a9f8b2e543 storage1 C3L-06067.RNA-Seq.R1.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89954f3c-da45-438a-b8a2-7dc1ad42230c/210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R1_001.fastq.gz 2916957806 FASTQ NA 89954f3c-da45-438a-b8a2-7dc1ad42230c storage1 C3L-06067.RNA-Seq.R2.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b1537c-fbda-4372-b0a8-e3d8439618ac/210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R2_001.fastq.gz 3143692869 FASTQ NA 65b1537c-fbda-4372-b0a8-e3d8439618ac storage1 +C3L-06067.WGS.Nbc.hg38 C3L-06067 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfd184ff-b179-4ab5-9587-83ed28776f05/cb29e5c2-b79b-4190-b779-a0279f80e165_wgs_gdc_realn.bam 190916611988 BAM hg38 dfd184ff-b179-4ab5-9587-83ed28776f05 storage1 +C3L-06067.WGS.Tbm.hg38 C3L-06067 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fa81a7c-59ad-4ece-a675-850df0bae7c2/f522dd61-ba96-4a7c-b014-8702b6f2f61d_wgs_gdc_realn.bam 152940156602 BAM hg38 7fa81a7c-59ad-4ece-a675-850df0bae7c2 storage1 +C3L-06067.WXS.Nbc.hg38 C3L-06067 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57e18e83-d70b-4032-8ffd-f1406162100c/cb29e5c2-b79b-4190-b779-a0279f80e165_wxs_gdc_realn.bam 38364605151 BAM hg38 57e18e83-d70b-4032-8ffd-f1406162100c storage1 +C3L-06067.WXS.Tbm.hg38 C3L-06067 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0efcd816-766f-4cdb-b30e-1c99b7818e59/f522dd61-ba96-4a7c-b014-8702b6f2f61d_wxs_gdc_realn.bam 36584986067 BAM hg38 0efcd816-766f-4cdb-b30e-1c99b7818e59 storage1 C3L-06068.RNA-Seq.genomic.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/021a0b24-2009-423b-98fa-199288dca752/8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.genomic.gdc_realn.bam 6844058343 BAM hg38 021a0b24-2009-423b-98fa-199288dca752 storage1 +C3L-06068.RNA-Seq.genomic.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ad851fa-7d91-45fd-b114-80243f1e04df/8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.genomic.gdc_realn.bam 6844058343 BAM hg38 3ad851fa-7d91-45fd-b114-80243f1e04df storage1 C3L-06068.RNA-Seq.R1.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c677a8d-3ac0-4ae0-abb2-c7df39a91396/210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R1_001.fastq.gz 3486498695 FASTQ NA 3c677a8d-3ac0-4ae0-abb2-c7df39a91396 storage1 C3L-06068.RNA-Seq.R2.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/595a29b0-a6b9-4462-b007-c0bbaa069d36/210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R2_001.fastq.gz 3686557876 FASTQ NA 595a29b0-a6b9-4462-b007-c0bbaa069d36 storage1 +C3L-06068.WGS.Nbc.hg38 C3L-06068 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1b8e0e8-78c2-4480-b230-d7d243dcae43/97ab5be9-f390-43ec-8d39-bdd5dbfb42fd_wgs_gdc_realn.bam 146224563454 BAM hg38 f1b8e0e8-78c2-4480-b230-d7d243dcae43 storage1 +C3L-06068.WGS.Tbm.hg38 C3L-06068 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa7b5688-3e56-4228-becf-ccb94c76f378/c8241e1e-f164-4510-9868-d017ca302616_wgs_gdc_realn.bam 141454550444 BAM hg38 aa7b5688-3e56-4228-becf-ccb94c76f378 storage1 C3L-06069.RNA-Seq.genomic.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb6b55ed-f1d3-407e-a70a-605f02bdb159/36eba926-9018-4ace-a583-b6ee8c8d50b8.rna_seq.genomic.gdc_realn.bam 7134132369 BAM hg38 fb6b55ed-f1d3-407e-a70a-605f02bdb159 storage1 +C3L-06069.RNA-Seq.genomic.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9b615dc-3e66-4d8d-9fad-87b72c3a3df3/b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.genomic.gdc_realn.bam 7143808309 BAM hg38 b9b615dc-3e66-4d8d-9fad-87b72c3a3df3 storage1 C3L-06069.RNA-Seq.R1.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09a525b6-cb9f-43eb-9c3c-a1a77e10456c/210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R1_001.fastq.gz 3577663162 FASTQ NA 09a525b6-cb9f-43eb-9c3c-a1a77e10456c storage1 C3L-06069.RNA-Seq.R2.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a9086a9-e3d9-408d-aeb8-162c800d364c/210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R2_001.fastq.gz 3899204966 FASTQ NA 8a9086a9-e3d9-408d-aeb8-162c800d364c storage1 +C3L-06069.WGS.Nbc.hg38 C3L-06069 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdc8d9db-7c70-44f3-b4bf-79729d61e81e/f15999aa-0027-403b-a9fc-a857a8d6a6f9_wgs_gdc_realn.bam 151945577645 BAM hg38 fdc8d9db-7c70-44f3-b4bf-79729d61e81e storage1 +C3L-06069.WGS.Tbm.hg38 C3L-06069 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6479fcbc-6431-49c3-bb94-71a681a7438f/06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wgs_gdc_realn.bam 134457839495 BAM hg38 6479fcbc-6431-49c3-bb94-71a681a7438f storage1 +C3L-06069.WXS.Nbc.hg38 C3L-06069 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0bc45139-a05c-4cb0-bbf0-3218db271cdb/f15999aa-0027-403b-a9fc-a857a8d6a6f9_wxs_gdc_realn.bam 26206772341 BAM hg38 0bc45139-a05c-4cb0-bbf0-3218db271cdb storage1 +C3L-06069.WXS.Tbm.hg38 C3L-06069 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea93f57a-46ae-421b-9902-3cb89ecb4202/06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wxs_gdc_realn.bam 35693747490 BAM hg38 ea93f57a-46ae-421b-9902-3cb89ecb4202 storage1 C3L-06070.RNA-Seq.genomic.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd0f3b19-5c7c-443c-82eb-4254c7d59e54/45fd5310-b003-4aa1-bdd6-6c4ae9bcc0e1.rna_seq.genomic.gdc_realn.bam 6500357059 BAM hg38 dd0f3b19-5c7c-443c-82eb-4254c7d59e54 storage1 +C3L-06070.RNA-Seq.genomic.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07f94ba3-56e7-4258-8b07-813bf2ba8c45/5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.genomic.gdc_realn.bam 6510103232 BAM hg38 07f94ba3-56e7-4258-8b07-813bf2ba8c45 storage1 C3L-06070.RNA-Seq.R1.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e971ec7c-cdd4-4dc7-a1fc-4441d77fefc9/210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R1_001.fastq.gz 3218158809 FASTQ NA e971ec7c-cdd4-4dc7-a1fc-4441d77fefc9 storage1 C3L-06070.RNA-Seq.R2.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff2b4fc1-70a1-4d38-86a8-672a3a312966/210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R2_001.fastq.gz 3422155076 FASTQ NA ff2b4fc1-70a1-4d38-86a8-672a3a312966 storage1 +C3L-06070.WGS.Nbc.hg38 C3L-06070 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3180940-67d0-4bcf-8e9a-0ddb4e4936c7/6152d143-77fc-469a-825a-cc922a7793c3_wgs_gdc_realn.bam 180241304280 BAM hg38 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 storage1 +C3L-06070.WGS.Tbm.hg38 C3L-06070 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3419350-e9c5-489f-beec-f35203a5c2a4/9107763d-3224-4001-960a-ffe32c9e53eb_wgs_gdc_realn.bam 176373227224 BAM hg38 c3419350-e9c5-489f-beec-f35203a5c2a4 storage1 +C3L-06070.WXS.Nbc.hg38 C3L-06070 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b11b88a5-4c4a-437d-8d74-99bdc25e5cfa/6152d143-77fc-469a-825a-cc922a7793c3_wxs_gdc_realn.bam 33494030818 BAM hg38 b11b88a5-4c4a-437d-8d74-99bdc25e5cfa storage1 +C3L-06070.WXS.Tbm.hg38 C3L-06070 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7b34294-8591-486f-98ed-da7a388edb83/9107763d-3224-4001-960a-ffe32c9e53eb_wxs_gdc_realn.bam 27486888087 BAM hg38 b7b34294-8591-486f-98ed-da7a388edb83 storage1 +C3L-06072.RNA-Seq.genomic.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40219852-bc64-4e7a-a575-13ec182a8d4b/6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.genomic.gdc_realn.bam 7069676273 BAM hg38 40219852-bc64-4e7a-a575-13ec182a8d4b storage1 C3L-06072.RNA-Seq.R1.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82b7f51d-b538-4767-ae05-11d9894594c6/211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R1_001.fastq.gz 3545686367 FASTQ NA 82b7f51d-b538-4767-ae05-11d9894594c6 storage1 C3L-06072.RNA-Seq.R2.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e54968f4-2495-4405-970e-709db0d36a14/211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R2_001.fastq.gz 3805050664 FASTQ NA e54968f4-2495-4405-970e-709db0d36a14 storage1 +C3L-06072.WGS.Nbc.hg38 C3L-06072 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/343a85c3-aea3-4ca6-88e8-dadeff887a4f/1adf12e4-ba45-415f-865f-d7974cd71439_wgs_gdc_realn.bam 148315312881 BAM hg38 343a85c3-aea3-4ca6-88e8-dadeff887a4f storage1 +C3L-06072.WGS.Tpb.hg38 C3L-06072 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d89ac0df-eada-4938-9b40-4ff3515eacdb/119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wgs_gdc_realn.bam 127936543010 BAM hg38 d89ac0df-eada-4938-9b40-4ff3515eacdb storage1 +C3L-06072.WXS.Nbc.hg38 C3L-06072 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dedd32c0-3e63-45e0-ad49-7f74153a9cf4/1adf12e4-ba45-415f-865f-d7974cd71439_wxs_gdc_realn.bam 24287119355 BAM hg38 dedd32c0-3e63-45e0-ad49-7f74153a9cf4 storage1 +C3L-06072.WXS.Tpb.hg38 C3L-06072 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d6dce3c-9f69-461b-83c8-2b752452b7e9/119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wxs_gdc_realn.bam 39063588272 BAM hg38 8d6dce3c-9f69-461b-83c8-2b752452b7e9 storage1 C3L-06073.RNA-Seq.genomic.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f11a67e1-e715-410e-a810-0a2136c1bc75/83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.genomic.gdc_realn.bam 8159541327 BAM hg38 f11a67e1-e715-410e-a810-0a2136c1bc75 storage1 +C3L-06073.RNA-Seq.genomic.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e006dbd-8126-4768-ae4f-68e477a864ff/83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.genomic.gdc_realn.bam 8159541327 BAM hg38 0e006dbd-8126-4768-ae4f-68e477a864ff storage1 C3L-06073.RNA-Seq.R1.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a9f2071-6f43-42f7-8e78-249b76c494bb/210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R1_001.fastq.gz 3936008383 FASTQ NA 2a9f2071-6f43-42f7-8e78-249b76c494bb storage1 C3L-06073.RNA-Seq.R2.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f74e6b9e-cdcf-4669-bf48-e344ed3459c6/210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R2_001.fastq.gz 4254043495 FASTQ NA f74e6b9e-cdcf-4669-bf48-e344ed3459c6 storage1 +C3L-06074.RNA-Seq.genomic.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d51c77a9-8d6a-4849-baf0-09440f07ef5a/a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.genomic.gdc_realn.bam 8801923084 BAM hg38 d51c77a9-8d6a-4849-baf0-09440f07ef5a storage1 C3L-06074.RNA-Seq.R1.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50dd645d-18fe-47a6-9c84-3ab2cc4920cf/211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4499840671 FASTQ NA 50dd645d-18fe-47a6-9c84-3ab2cc4920cf storage1 C3L-06074.RNA-Seq.R2.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1454570b-74ec-4b94-8d48-7c72d5f8470b/211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4669385308 FASTQ NA 1454570b-74ec-4b94-8d48-7c72d5f8470b storage1 +C3L-06074.WGS.Nbc.hg38 C3L-06074 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d389e536-718a-4c9c-99c7-8301baa0fd09/af33e386-18b7-4f20-85f9-5bb0131d9b0a_wgs_gdc_realn.bam 170347703859 BAM hg38 d389e536-718a-4c9c-99c7-8301baa0fd09 storage1 +C3L-06074.WGS.Tpb.hg38 C3L-06074 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b02e7e1-703f-44b0-8aa8-f1c52e7788a6/317ae442-efba-4243-814a-09cad953f602_wgs_gdc_realn.bam 367154639935 BAM hg38 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 storage1 +C3L-06074.WXS.Nbc.hg38 C3L-06074 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b1616ba-b1fd-4f17-9ce9-97fc0d0c1e0f/af33e386-18b7-4f20-85f9-5bb0131d9b0a_wxs_gdc_realn.bam 35245093334 BAM hg38 1b1616ba-b1fd-4f17-9ce9-97fc0d0c1e0f storage1 +C3L-06074.WXS.Tpb.hg38 C3L-06074 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8447e47e-4650-46f1-a31e-4caca566ccf8/317ae442-efba-4243-814a-09cad953f602_wxs_gdc_realn.bam 36343841110 BAM hg38 8447e47e-4650-46f1-a31e-4caca566ccf8 storage1 +C3L-06075.RNA-Seq.genomic.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e051787-6872-4fd0-ae1e-2972a73383fe/f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.genomic.gdc_realn.bam 9264501711 BAM hg38 2e051787-6872-4fd0-ae1e-2972a73383fe storage1 C3L-06075.RNA-Seq.R1.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d51a2e7-9fda-4770-a77b-c59c840ed0b6/220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R1_001.fastq.gz 4001226423 FASTQ NA 4d51a2e7-9fda-4770-a77b-c59c840ed0b6 storage1 C3L-06075.RNA-Seq.R2.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/542b3afd-7589-453f-bc59-771b68fe1c25/220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R2_001.fastq.gz 4288087488 FASTQ NA 542b3afd-7589-453f-bc59-771b68fe1c25 storage1 +C3L-06075.WGS.Nbc.hg38 C3L-06075 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47e8d381-d52d-4117-b450-ab265a010af9/7ff77494-ebab-43b5-b756-6acd97a90b78_wgs_gdc_realn.bam 203620540701 BAM hg38 47e8d381-d52d-4117-b450-ab265a010af9 storage1 +C3L-06075.WGS.Tbm.hg38 C3L-06075 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17f35cdd-9827-40b2-9f27-f7ff88dbfed0/3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wgs_gdc_realn.bam 166584458143 BAM hg38 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 storage1 +C3L-06075.WXS.Nbc.hg38 C3L-06075 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ce214e7-d2a0-407a-9207-88a0bd2e49a6/7ff77494-ebab-43b5-b756-6acd97a90b78_wxs_gdc_realn.bam 40422279314 BAM hg38 6ce214e7-d2a0-407a-9207-88a0bd2e49a6 storage1 +C3L-06075.WXS.Tbm.hg38 C3L-06075 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72f599d1-d66b-4db4-bbd6-3cc94517884f/3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wxs_gdc_realn.bam 38474016924 BAM hg38 72f599d1-d66b-4db4-bbd6-3cc94517884f storage1 +C3L-06081.RNA-Seq.genomic.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d5e524a-6724-4aec-99d6-6f86cb1801ae/1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.genomic.gdc_realn.bam 9169586737 BAM hg38 3d5e524a-6724-4aec-99d6-6f86cb1801ae storage1 C3L-06081.RNA-Seq.R1.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27d6ab0a-cbb7-40b9-af9e-a3e7a407b8a7/220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R1_001.fastq.gz 4524484967 FASTQ NA 27d6ab0a-cbb7-40b9-af9e-a3e7a407b8a7 storage1 C3L-06081.RNA-Seq.R2.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f431e06-a2ed-411c-834b-ac6573ec6994/220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R2_001.fastq.gz 5017312104 FASTQ NA 8f431e06-a2ed-411c-834b-ac6573ec6994 storage1 +C3L-06081.WGS.Nbc.hg38 C3L-06081 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1b6ce2c-5f95-4401-aacf-ba91ba168ea4/514223c1-3f15-441e-b150-c3ac379276de_wgs_gdc_realn.bam 135193769846 BAM hg38 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 storage1 +C3L-06081.WGS.Tbm.hg38 C3L-06081 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a5d9822-2aac-41de-a04c-3bfcc975bd20/f5223369-0629-49fe-8d6c-168633407e79_wgs_gdc_realn.bam 172146341176 BAM hg38 8a5d9822-2aac-41de-a04c-3bfcc975bd20 storage1 +C3L-06081.WXS.Nbc.hg38 C3L-06081 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73f5f03d-516a-46ca-afad-3e1cc385cf4d/514223c1-3f15-441e-b150-c3ac379276de_wxs_gdc_realn.bam 40169047067 BAM hg38 73f5f03d-516a-46ca-afad-3e1cc385cf4d storage1 +C3L-06081.WXS.Tbm.hg38 C3L-06081 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b620621-8e5f-4c2b-a1bf-700aab00eba9/f5223369-0629-49fe-8d6c-168633407e79_wxs_gdc_realn.bam 39570188846 BAM hg38 3b620621-8e5f-4c2b-a1bf-700aab00eba9 storage1 +C3L-06082.RNA-Seq.genomic.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27b69363-710f-457d-ac2e-195f49983ffb/fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.genomic.gdc_realn.bam 8207921033 BAM hg38 27b69363-710f-457d-ac2e-195f49983ffb storage1 C3L-06082.RNA-Seq.R1.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5de83077-6e32-4796-90d6-7742845fbd32/211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R1_001.fastq.gz 4151955597 FASTQ NA 5de83077-6e32-4796-90d6-7742845fbd32 storage1 C3L-06082.RNA-Seq.R2.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ed174f8-22b4-4d16-a3f7-82447ac3d34a/211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R2_001.fastq.gz 4441579884 FASTQ NA 3ed174f8-22b4-4d16-a3f7-82447ac3d34a storage1 +C3L-06082.WXS.Nbc.hg38 C3L-06082 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed1760b8-da9b-4a5a-9433-9d010236f046/f6184d62-7c6f-49a7-a375-574fcd8faa62_wxs_gdc_realn.bam 35355218737 BAM hg38 ed1760b8-da9b-4a5a-9433-9d010236f046 storage1 +C3L-06082.WXS.Tbm.hg38 C3L-06082 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69e375cb-f7a4-48b3-b428-ae1b3b6bd512/76ef3c77-d9e5-4081-afdf-5079589663c7_wxs_gdc_realn.bam 39154540027 BAM hg38 69e375cb-f7a4-48b3-b428-ae1b3b6bd512 storage1 +C3L-06087.RNA-Seq.genomic.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3947512f-2fee-47d8-8cde-26b732b03290/816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.genomic.gdc_realn.bam 7351405463 BAM hg38 3947512f-2fee-47d8-8cde-26b732b03290 storage1 C3L-06087.RNA-Seq.R1.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2759438e-13fb-4a68-8f93-de762a312def/211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3677062427 FASTQ NA 2759438e-13fb-4a68-8f93-de762a312def storage1 C3L-06087.RNA-Seq.R2.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e2cbc0b-182d-45ba-873e-ef9ce51ced6b/211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3865925400 FASTQ NA 7e2cbc0b-182d-45ba-873e-ef9ce51ced6b storage1 +C3L-06087.WGS.Nbc.hg38 C3L-06087 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76fbce3e-9d03-4812-af81-48f4ece89e38/579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wgs_gdc_realn.bam 144507062127 BAM hg38 76fbce3e-9d03-4812-af81-48f4ece89e38 storage1 +C3L-06087.WGS.Tpb.hg38 C3L-06087 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da1742db-aaf8-4617-a695-fea2359a0c0b/bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wgs_gdc_realn.bam 135893960716 BAM hg38 da1742db-aaf8-4617-a695-fea2359a0c0b storage1 +C3L-06087.WXS.Nbc.hg38 C3L-06087 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45604952-1385-4e46-b462-998b6208de8a/579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wxs_gdc_realn.bam 33053744588 BAM hg38 45604952-1385-4e46-b462-998b6208de8a storage1 +C3L-06087.WXS.Tpb.hg38 C3L-06087 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e076dabd-9af6-4cd2-81cf-948c8212f335/bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wxs_gdc_realn.bam 30153143018 BAM hg38 e076dabd-9af6-4cd2-81cf-948c8212f335 storage1 +C3L-06089.RNA-Seq.genomic.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8591116-5067-45f8-8055-17cac5fa76c8/94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.genomic.gdc_realn.bam 8215952364 BAM hg38 a8591116-5067-45f8-8055-17cac5fa76c8 storage1 C3L-06089.RNA-Seq.R1.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b712df6d-c392-46bf-8466-ce7af45d8b74/211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R1_001.fastq.gz 4099782324 FASTQ NA b712df6d-c392-46bf-8466-ce7af45d8b74 storage1 C3L-06089.RNA-Seq.R2.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8279bbfd-fc68-4b8e-96d6-a830a752527b/211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R2_001.fastq.gz 4372659822 FASTQ NA 8279bbfd-fc68-4b8e-96d6-a830a752527b storage1 +C3L-06089.WGS.Nbc.hg38 C3L-06089 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08e06a2b-fa98-47c2-8e5d-8a17196c3211/f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wgs_gdc_realn.bam 133693382041 BAM hg38 08e06a2b-fa98-47c2-8e5d-8a17196c3211 storage1 +C3L-06089.WGS.Tpb.hg38 C3L-06089 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37b73a94-d717-4fad-b01b-6f184d89e923/2f1ed585-fbde-4e6c-ab04-622098a497f1_wgs_gdc_realn.bam 128549005080 BAM hg38 37b73a94-d717-4fad-b01b-6f184d89e923 storage1 +C3L-06089.WXS.Nbc.hg38 C3L-06089 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/649cedd6-dca5-483a-a82b-5388be642838/f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wxs_gdc_realn.bam 37751006036 BAM hg38 649cedd6-dca5-483a-a82b-5388be642838 storage1 +C3L-06089.WXS.Tpb.hg38 C3L-06089 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a9ebaa5-b7d2-4194-9574-334e4670fa24/2f1ed585-fbde-4e6c-ab04-622098a497f1_wxs_gdc_realn.bam 41009935022 BAM hg38 0a9ebaa5-b7d2-4194-9574-334e4670fa24 storage1 +C3L-06090.RNA-Seq.genomic.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ddbfb9a-50eb-4e36-981f-5a530fb79bbf/0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.genomic.gdc_realn.bam 7815513794 BAM hg38 1ddbfb9a-50eb-4e36-981f-5a530fb79bbf storage1 C3L-06090.RNA-Seq.R1.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aced9574-d984-40e2-ad49-44cb32111bb8/211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R1_001.fastq.gz 3863859446 FASTQ NA aced9574-d984-40e2-ad49-44cb32111bb8 storage1 C3L-06090.RNA-Seq.R2.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a865415-1cd7-45e3-8b19-187d4a706914/211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R2_001.fastq.gz 4193155097 FASTQ NA 8a865415-1cd7-45e3-8b19-187d4a706914 storage1 +C3L-06090.WGS.Nbc.hg38 C3L-06090 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a722364a-e5e2-4e48-b998-36ebf73181a1/1aeb5038-b0b7-42e0-b21a-b37af6897731_wgs_gdc_realn.bam 135844710501 BAM hg38 a722364a-e5e2-4e48-b998-36ebf73181a1 storage1 +C3L-06090.WGS.Tpb.hg38 C3L-06090 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f011ecf-0b85-490f-9a3d-cc1a4ba0879a/0f430a1e-5857-4578-8cb3-f0557b75bf54_wgs_gdc_realn.bam 136604782264 BAM hg38 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a storage1 +C3L-06090.WXS.Nbc.hg38 C3L-06090 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71ab0872-716e-451f-8bcb-46b1805592cf/1aeb5038-b0b7-42e0-b21a-b37af6897731_wxs_gdc_realn.bam 28827956277 BAM hg38 71ab0872-716e-451f-8bcb-46b1805592cf storage1 +C3L-06090.WXS.Tpb.hg38 C3L-06090 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf/0f430a1e-5857-4578-8cb3-f0557b75bf54_wxs_gdc_realn.bam 30681620462 BAM hg38 b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf storage1 C3L-06166.RNA-Seq.R1.T C3L-06166 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4b7dcf5-c1c6-4e10-b6ab-89137e4be289/20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ NA e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 storage1 C3L-06166.RNA-Seq.R2.T C3L-06166 HNSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e4d4f96-d06f-4f46-9a9c-db812695fad7/20210723_P2_D1_WB7988-plate2_S37_R2_001.fastq.gz 3526630052 FASTQ NA 3e4d4f96-d06f-4f46-9a9c-db812695fad7 storage1 C3L-06169.RNA-Seq.R1.A C3L-06169 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36bc82c5-ec55-4d82-8120-70629a8fe622/200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R1_001.fastq.gz 3521793454 FASTQ NA 36bc82c5-ec55-4d82-8120-70629a8fe622 storage1 @@ -3693,55 +4115,130 @@ C3L-06169.RNA-Seq.R2.A C3L-06169 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3L-06169.RNA-Seq.R2.T C3L-06169 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1450f737-61b9-4fae-a7b5-9139ab891db3/200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R2_001.fastq.gz 4076167287 FASTQ NA 1450f737-61b9-4fae-a7b5-9139ab891db3 storage1 C3L-06169.WGS.N.hg38 C3L-06169 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/535ed714-d6e5-4a74-99b7-ba78acdffa9a/0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 68073812557 BAM hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a storage1 C3L-06169.WGS.T.hg38 C3L-06169 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2/4aa15ba7-8f09-406f-9950-0dbaad1751f0_wgs_gdc_realn.bam 75314839042 BAM hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 storage1 +C3L-06352.RNA-Seq.genomic.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df2eb2cf-9187-4bda-9fe4-071966a85514/339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.genomic.gdc_realn.bam 7409333053 BAM hg38 df2eb2cf-9187-4bda-9fe4-071966a85514 storage1 C3L-06352.RNA-Seq.R1.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/410f0722-f272-45d3-bb61-d02385a8dd41/211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 3712758461 FASTQ NA 410f0722-f272-45d3-bb61-d02385a8dd41 storage1 C3L-06352.RNA-Seq.R2.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94ab1d18-35e2-4337-8e4c-79dc8f176cf7/211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 3973065633 FASTQ NA 94ab1d18-35e2-4337-8e4c-79dc8f176cf7 storage1 +C3L-06352.WGS.Nbc.hg38 C3L-06352 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27595487-bbe0-436e-b38c-1d86aa50d8b0/8f59793f-4cee-4f3f-a8ef-4203804d115b_wgs_gdc_realn.bam 123922636659 BAM hg38 27595487-bbe0-436e-b38c-1d86aa50d8b0 storage1 +C3L-06352.WGS.Tpb.hg38 C3L-06352 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17c81b9e-2685-4178-8bb1-046c9380bfba/686262c4-f449-4965-b65c-27019801671d_wgs_gdc_realn.bam 169114943867 BAM hg38 17c81b9e-2685-4178-8bb1-046c9380bfba storage1 +C3L-06352.WXS.Nbc.hg38 C3L-06352 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f09dcaa8-87ac-4636-aec0-3b31d72597e9/8f59793f-4cee-4f3f-a8ef-4203804d115b_wxs_gdc_realn.bam 41208313693 BAM hg38 f09dcaa8-87ac-4636-aec0-3b31d72597e9 storage1 +C3L-06352.WXS.Tpb.hg38 C3L-06352 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a47a0dda-4b98-478b-ae1f-3220e5d4b9b8/686262c4-f449-4965-b65c-27019801671d_wxs_gdc_realn.bam 33935153637 BAM hg38 a47a0dda-4b98-478b-ae1f-3220e5d4b9b8 storage1 C3L-06356.RNA-Seq.genomic.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4917427c-3649-4c5d-aa85-965691523dc0/5bc6d131-7d5b-4d6a-9111-5b6a09a9b48d.rna_seq.genomic.gdc_realn.bam 6787466005 BAM hg38 4917427c-3649-4c5d-aa85-965691523dc0 storage1 +C3L-06356.RNA-Seq.genomic.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a9113a3-17a1-4b07-8fd8-0bdb076ec586/188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.genomic.gdc_realn.bam 6793964486 BAM hg38 3a9113a3-17a1-4b07-8fd8-0bdb076ec586 storage1 C3L-06356.RNA-Seq.R1.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/982e7649-c13c-4393-b05e-0d1ac8228221/210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 3354501657 FASTQ NA 982e7649-c13c-4393-b05e-0d1ac8228221 storage1 C3L-06356.RNA-Seq.R2.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42345a72-3860-463d-bccb-53bd28182ed9/210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 3644776298 FASTQ NA 42345a72-3860-463d-bccb-53bd28182ed9 storage1 +C3L-06356.WGS.Nbc.hg38 C3L-06356 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77636d17-c52a-44b3-9a13-5a4a0e06d660/6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wgs_gdc_realn.bam 146301175318 BAM hg38 77636d17-c52a-44b3-9a13-5a4a0e06d660 storage1 +C3L-06356.WGS.Tbm.hg38 C3L-06356 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e9fdf55-4553-45ce-b272-d72a89ebeccd/cb6684bd-ab94-47bb-948f-14e8dc209b0e_wgs_gdc_realn.bam 150032150896 BAM hg38 7e9fdf55-4553-45ce-b272-d72a89ebeccd storage1 +C3L-06356.WXS.Nbc.hg38 C3L-06356 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87a3ee1c-badb-4f3b-af8e-6ad4f68b7be8/6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wxs_gdc_realn.bam 44119199249 BAM hg38 87a3ee1c-badb-4f3b-af8e-6ad4f68b7be8 storage1 +C3L-06356.WXS.Tbm.hg38 C3L-06356 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2493d649-636d-4750-b041-634e8ead6c2f/cb6684bd-ab94-47bb-948f-14e8dc209b0e_wxs_gdc_realn.bam 37177646298 BAM hg38 2493d649-636d-4750-b041-634e8ead6c2f storage1 C3L-06357.RNA-Seq.genomic.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17200710-e2b7-4302-ae1e-3940951d2ab2/3dbdd92e-e70e-496b-9676-f5bc42aa1065.rna_seq.genomic.gdc_realn.bam 9533834279 BAM hg38 17200710-e2b7-4302-ae1e-3940951d2ab2 storage1 +C3L-06357.RNA-Seq.genomic.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb47d829-8369-4411-9481-2eb11a4ae6f0/247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.genomic.gdc_realn.bam 9544647466 BAM hg38 eb47d829-8369-4411-9481-2eb11a4ae6f0 storage1 C3L-06357.RNA-Seq.R1.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec1e8eae-c0b1-4f4f-84a1-7c89b4de576a/210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R1_001.fastq.gz 4878621442 FASTQ NA ec1e8eae-c0b1-4f4f-84a1-7c89b4de576a storage1 C3L-06357.RNA-Seq.R2.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5daae8a-9e87-4dde-a643-4063ff946fc6/210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R2_001.fastq.gz 5400504085 FASTQ NA e5daae8a-9e87-4dde-a643-4063ff946fc6 storage1 +C3L-06357.WGS.Nbc.hg38 C3L-06357 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ae5fa74-35c4-400e-8946-969a354b3d0d/38def854-7f69-4574-8538-a33f2ddac72d_wgs_gdc_realn.bam 147818241279 BAM hg38 0ae5fa74-35c4-400e-8946-969a354b3d0d storage1 +C3L-06357.WGS.Tbm.hg38 C3L-06357 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84/e9027e42-32a8-4775-b3b5-35a50556e467_wgs_gdc_realn.bam 157174880176 BAM hg38 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 storage1 +C3L-06357.WXS.Nbc.hg38 C3L-06357 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27df62fa-1212-431d-8211-9981886b123d/38def854-7f69-4574-8538-a33f2ddac72d_wxs_gdc_realn.bam 36611768867 BAM hg38 27df62fa-1212-431d-8211-9981886b123d storage1 +C3L-06357.WXS.Tbm.hg38 C3L-06357 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fecf565-75c1-4474-a90e-30201dc60394/e9027e42-32a8-4775-b3b5-35a50556e467_wxs_gdc_realn.bam 29740004887 BAM hg38 2fecf565-75c1-4474-a90e-30201dc60394 storage1 C3L-06361.RNA-Seq.genomic.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c150f9d-6037-4fa2-905b-693a2a1ddf38/dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.genomic.gdc_realn.bam 8021143089 BAM hg38 8c150f9d-6037-4fa2-905b-693a2a1ddf38 storage1 +C3L-06361.RNA-Seq.genomic.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3957fa69-3161-4368-8db1-11b689f1b1e1/dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.genomic.gdc_realn.bam 8021143089 BAM hg38 3957fa69-3161-4368-8db1-11b689f1b1e1 storage1 C3L-06361.RNA-Seq.R1.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22f88357-a1a0-4130-9373-ede06a3ee0d8/210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 3984018859 FASTQ NA 22f88357-a1a0-4130-9373-ede06a3ee0d8 storage1 C3L-06361.RNA-Seq.R2.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44c74e6a-9e07-4895-9db3-443802ec3baa/210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4397216742 FASTQ NA 44c74e6a-9e07-4895-9db3-443802ec3baa storage1 +C3L-06361.WXS.Nbc.hg38 C3L-06361 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da2e2061-120f-44eb-90c4-e49d0abe0df4/b6af685c-5835-4a9f-9122-16af2393145e_wxs_gdc_realn.bam 36905068313 BAM hg38 da2e2061-120f-44eb-90c4-e49d0abe0df4 storage1 +C3L-06361.WXS.Tbm.hg38 C3L-06361 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b21cc41-fe38-43fe-b81c-d4a64da6761a/2ad00ca6-3988-4545-b340-4d7bf367c999_wxs_gdc_realn.bam 38548533226 BAM hg38 7b21cc41-fe38-43fe-b81c-d4a64da6761a storage1 C3L-06364.RNA-Seq.genomic.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01ccc794-5d90-4fb5-b545-3cc168fd9244/2f9c36dd-676c-4550-8c07-96c21d74fd65.rna_seq.genomic.gdc_realn.bam 7738872439 BAM hg38 01ccc794-5d90-4fb5-b545-3cc168fd9244 storage1 +C3L-06364.RNA-Seq.genomic.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3befe369-969b-4fd4-8002-7aa189f89d63/80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.genomic.gdc_realn.bam 7744140655 BAM hg38 3befe369-969b-4fd4-8002-7aa189f89d63 storage1 C3L-06364.RNA-Seq.R1.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee/210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3941468854 FASTQ NA 8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee storage1 C3L-06364.RNA-Seq.R2.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bae466cc-d600-4db8-a4bb-915e6fac032f/210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4473539092 FASTQ NA bae466cc-d600-4db8-a4bb-915e6fac032f storage1 +C3L-06364.WGS.Nbc.hg38 C3L-06364 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04197309-7cc3-4385-a294-284c8c7e108d/9b14a9ae-a157-467e-9dec-3fe18c5de85b_wgs_gdc_realn.bam 164724639010 BAM hg38 04197309-7cc3-4385-a294-284c8c7e108d storage1 +C3L-06364.WGS.Tbm.hg38 C3L-06364 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d61d96da-f617-4d13-adae-d615f336047c/6ad00ada-9022-47e2-bcc0-6e89ebadd037_wgs_gdc_realn.bam 157591079901 BAM hg38 d61d96da-f617-4d13-adae-d615f336047c storage1 +C3L-06364.WXS.Nbc.hg38 C3L-06364 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/781cad08-5f3f-483a-b56a-0415097dd98e/9b14a9ae-a157-467e-9dec-3fe18c5de85b_wxs_gdc_realn.bam 32230780864 BAM hg38 781cad08-5f3f-483a-b56a-0415097dd98e storage1 +C3L-06364.WXS.Tbm.hg38 C3L-06364 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ddad72e-d954-4d7d-a59e-20d0ddcbd7f5/6ad00ada-9022-47e2-bcc0-6e89ebadd037_wxs_gdc_realn.bam 30566871238 BAM hg38 4ddad72e-d954-4d7d-a59e-20d0ddcbd7f5 storage1 +C3L-06367.RNA-Seq.genomic.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7bf853f8-ccc2-4120-b90b-317bfbeb65ad/f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.genomic.gdc_realn.bam 9396216656 BAM hg38 7bf853f8-ccc2-4120-b90b-317bfbeb65ad storage1 C3L-06367.RNA-Seq.R1.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fb2e454-11e7-44fd-97a5-abd68cc50890/210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4138889339 FASTQ NA 9fb2e454-11e7-44fd-97a5-abd68cc50890 storage1 C3L-06367.RNA-Seq.R2.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ff587b2-7250-4cae-b7f7-6be208c9ae33/210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4468004169 FASTQ NA 9ff587b2-7250-4cae-b7f7-6be208c9ae33 storage1 +C3L-06367.WGS.Nbc.hg38 C3L-06367 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d72473d5-e10f-4d2c-967b-af4c443685bd/0190064e-4d63-40c7-819c-93065350c542_wgs_gdc_realn.bam 203628893400 BAM hg38 d72473d5-e10f-4d2c-967b-af4c443685bd storage1 +C3L-06367.WGS.Tbm.hg38 C3L-06367 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b683e0d-6960-41cb-99c1-ed1ab9efa601/99b6afa0-9d8a-46f6-8038-5c90c81079a0_wgs_gdc_realn.bam 168586222152 BAM hg38 4b683e0d-6960-41cb-99c1-ed1ab9efa601 storage1 +C3L-06369.RNA-Seq.genomic.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d04625b0-1734-4b32-a491-4d827683931e/15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.genomic.gdc_realn.bam 8169511634 BAM hg38 d04625b0-1734-4b32-a491-4d827683931e storage1 C3L-06369.RNA-Seq.R1.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8912632e-66df-420c-9db6-8a5138fffedd/210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R1_001.fastq.gz 3884976741 FASTQ NA 8912632e-66df-420c-9db6-8a5138fffedd storage1 C3L-06369.RNA-Seq.R2.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d4ca071-c2ec-480b-ac31-4f78236b2d52/210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R2_001.fastq.gz 4137092013 FASTQ NA 0d4ca071-c2ec-480b-ac31-4f78236b2d52 storage1 +C3L-06369.WGS.Nbc.hg38 C3L-06369 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4778278-deab-47c4-8cad-3ad89a813df0/1082aa55-703a-44cd-b5c1-ef42b3954cd1_wgs_gdc_realn.bam 494553510166 BAM hg38 d4778278-deab-47c4-8cad-3ad89a813df0 storage1 +C3L-06369.WGS.Tbm.hg38 C3L-06369 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d93cf91b-6505-4604-90a9-1ed7919a25f7/12154a7c-6e25-40b7-93b5-1654c581800f_wgs_gdc_realn.bam 177220469953 BAM hg38 d93cf91b-6505-4604-90a9-1ed7919a25f7 storage1 +C3L-06369.WXS.Nbc.hg38 C3L-06369 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfec7a25-deba-47ba-baa1-a98913007129/1082aa55-703a-44cd-b5c1-ef42b3954cd1_wxs_gdc_realn.bam 30834556167 BAM hg38 cfec7a25-deba-47ba-baa1-a98913007129 storage1 +C3L-06369.WXS.Tbm.hg38 C3L-06369 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a646771-d8fc-4833-807f-d3ee0871497a/12154a7c-6e25-40b7-93b5-1654c581800f_wxs_gdc_realn.bam 43962325870 BAM hg38 2a646771-d8fc-4833-807f-d3ee0871497a storage1 +C3L-06374.RNA-Seq.genomic.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c1d1201-f2ce-4c4f-9c91-aa488d405f69/e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.genomic.gdc_realn.bam 7829029834 BAM hg38 5c1d1201-f2ce-4c4f-9c91-aa488d405f69 storage1 C3L-06374.RNA-Seq.R1.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23a53be6-2568-49b6-9e77-cb0f8b763b6f/210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R1_001.fastq.gz 3221254222 FASTQ NA 23a53be6-2568-49b6-9e77-cb0f8b763b6f storage1 C3L-06374.RNA-Seq.R2.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/210f1b92-20ce-4c76-b450-9070622728bd/210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R2_001.fastq.gz 3406264208 FASTQ NA 210f1b92-20ce-4c76-b450-9070622728bd storage1 +C3L-06374.WGS.Nbc.hg38 C3L-06374 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1baab9c9-7a4f-40c9-9873-5fa78856e42e/2cb5354f-1075-45c3-9267-37753db6669a_wgs_gdc_realn.bam 195481200931 BAM hg38 1baab9c9-7a4f-40c9-9873-5fa78856e42e storage1 +C3L-06374.WGS.Tbm.hg38 C3L-06374 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a782fa9-d539-48e4-bdea-eee86f280403/c35ea67c-6c16-44b1-8863-aaeaf66865f5_wgs_gdc_realn.bam 144070968583 BAM hg38 5a782fa9-d539-48e4-bdea-eee86f280403 storage1 +C3L-06374.WXS.Nbc.hg38 C3L-06374 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91de498d-bc4c-4448-a7ec-eda0c295ee08/2cb5354f-1075-45c3-9267-37753db6669a_wxs_gdc_realn.bam 22379237818 BAM hg38 91de498d-bc4c-4448-a7ec-eda0c295ee08 storage1 +C3L-06374.WXS.Tbm.hg38 C3L-06374 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9904b87f-a661-42a8-ad84-d5d7395609c8/c35ea67c-6c16-44b1-8863-aaeaf66865f5_wxs_gdc_realn.bam 29720041722 BAM hg38 9904b87f-a661-42a8-ad84-d5d7395609c8 storage1 +C3L-06386.RNA-Seq.genomic.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b8bd0ad-d2c6-464b-b55d-9e69a7bdf993/deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.genomic.gdc_realn.bam 7738238602 BAM hg38 6b8bd0ad-d2c6-464b-b55d-9e69a7bdf993 storage1 C3L-06386.RNA-Seq.R1.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/455d60e4-3183-4728-a235-10f3a9e8adf1/211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R1_001.fastq.gz 3700088810 FASTQ NA 455d60e4-3183-4728-a235-10f3a9e8adf1 storage1 C3L-06386.RNA-Seq.R2.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6934ddbf-b5e2-4486-8c78-acc7e79ad220/211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R2_001.fastq.gz 4159174920 FASTQ NA 6934ddbf-b5e2-4486-8c78-acc7e79ad220 storage1 +C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27966373-38a4-4697-8eda-28539d19e5c6/c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM hg38 27966373-38a4-4697-8eda-28539d19e5c6 storage1 +C3L-06386.WXS.Tbm.hg38 C3L-06386 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73f8f70a-98d4-4df8-89f2-596e281d1dc7/e1796217-7456-43a8-b557-a0a63046d0c6_wxs_gdc_realn.bam 42237742138 BAM hg38 73f8f70a-98d4-4df8-89f2-596e281d1dc7 storage1 C3L-06534.RNA-Seq.genomic.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/558d48f9-6f4c-41f9-8646-5e91ae983786/422d8e93-769b-4475-b04d-350b54d0fda3.rna_seq.genomic.gdc_realn.bam 9285837280 BAM hg38 558d48f9-6f4c-41f9-8646-5e91ae983786 storage1 +C3L-06534.RNA-Seq.genomic.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b773828c-4a01-41d0-8517-f5be2318d319/f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.genomic.gdc_realn.bam 9307738152 BAM hg38 b773828c-4a01-41d0-8517-f5be2318d319 storage1 C3L-06534.RNA-Seq.R1.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c9407bd-fb2c-4630-a594-3fe9336a1fdb/210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R1_001.fastq.gz 3659338538 FASTQ NA 5c9407bd-fb2c-4630-a594-3fe9336a1fdb storage1 C3L-06534.RNA-Seq.R2.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98809bf4-4138-472c-a8ac-931b6daef006/210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R2_001.fastq.gz 3950808227 FASTQ NA 98809bf4-4138-472c-a8ac-931b6daef006 storage1 C3L-06536.RNA-Seq.genomic.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/203ce439-1d30-4dd8-a7db-1b9da8524f8d/50f5f26d-18df-4828-8894-567462682c05.rna_seq.genomic.gdc_realn.bam 6438774541 BAM hg38 203ce439-1d30-4dd8-a7db-1b9da8524f8d storage1 +C3L-06536.RNA-Seq.genomic.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c7b4d69-e8c0-4fbb-8aa7-85c14730d5d6/00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.genomic.gdc_realn.bam 6448098497 BAM hg38 9c7b4d69-e8c0-4fbb-8aa7-85c14730d5d6 storage1 C3L-06536.RNA-Seq.R1.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f8b0a00-f2c6-45b7-a639-638866d2f1df/210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R1_001.fastq.gz 3216958952 FASTQ NA 2f8b0a00-f2c6-45b7-a639-638866d2f1df storage1 C3L-06536.RNA-Seq.R2.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57ee0236-540a-4ee1-988d-31a66667aa68/210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R2_001.fastq.gz 3504158568 FASTQ NA 57ee0236-540a-4ee1-988d-31a66667aa68 storage1 +C3L-06536.WGS.Nbc.hg38 C3L-06536 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3eb1159-4ed5-4b4b-afc7-3121c141a45f/b5886ef8-aaae-46f8-9765-0aa2e77030ca_wgs_gdc_realn.bam 124125820790 BAM hg38 d3eb1159-4ed5-4b4b-afc7-3121c141a45f storage1 +C3L-06536.WGS.Tbm.hg38 C3L-06536 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0819a42c-0ec4-4c56-9085-a5cefa866e5c/e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wgs_gdc_realn.bam 136256114453 BAM hg38 0819a42c-0ec4-4c56-9085-a5cefa866e5c storage1 C3L-06537.RNA-Seq.genomic.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9d8a08c-af73-4c32-aba0-c7c28e31cb46/b41931f8-ebe5-4e78-b144-f64e4d02d562.rna_seq.genomic.gdc_realn.bam 10321995445 BAM hg38 f9d8a08c-af73-4c32-aba0-c7c28e31cb46 storage1 +C3L-06537.RNA-Seq.genomic.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2065bc0b-232d-4535-ad21-dbf6c0db6c03/47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.genomic.gdc_realn.bam 10325895462 BAM hg38 2065bc0b-232d-4535-ad21-dbf6c0db6c03 storage1 C3L-06537.RNA-Seq.R1.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2129002c-5336-4aae-b19a-72c5e3c4f60b/210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 5177540250 FASTQ NA 2129002c-5336-4aae-b19a-72c5e3c4f60b storage1 C3L-06537.RNA-Seq.R2.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8aaf31b8-a585-404c-aefa-a839c42b44b8/210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 5767583082 FASTQ NA 8aaf31b8-a585-404c-aefa-a839c42b44b8 storage1 +C3L-06537.WGS.Nbc.hg38 C3L-06537 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64b40dfd-471f-4fa3-bd24-f9ea433e8283/dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wgs_gdc_realn.bam 158430213572 BAM hg38 64b40dfd-471f-4fa3-bd24-f9ea433e8283 storage1 +C3L-06537.WGS.Tbm.hg38 C3L-06537 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/047b861d-0027-4d8e-94a9-319d18db7b84/e3e078d4-2998-4ded-b84e-9f6f734dde64_wgs_gdc_realn.bam 193442780818 BAM hg38 047b861d-0027-4d8e-94a9-319d18db7b84 storage1 +C3L-06537.WXS.Nbc.hg38 C3L-06537 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0003d0ca-9bcb-4dab-ad58-eb99f626d24f/dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wxs_gdc_realn.bam 28360021924 BAM hg38 0003d0ca-9bcb-4dab-ad58-eb99f626d24f storage1 +C3L-06537.WXS.Tbm.hg38 C3L-06537 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2938b8d2-b043-43cb-a92b-06cb22cdc57c/e3e078d4-2998-4ded-b84e-9f6f734dde64_wxs_gdc_realn.bam 27641043839 BAM hg38 2938b8d2-b043-43cb-a92b-06cb22cdc57c storage1 C3L-06538.RNA-Seq.genomic.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4f10a0e-386c-4b3c-bc05-8542d189d7f4/eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.genomic.gdc_realn.bam 8648220570 BAM hg38 e4f10a0e-386c-4b3c-bc05-8542d189d7f4 storage1 +C3L-06538.RNA-Seq.genomic.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59b21a63-9328-491d-b69b-d372e653712e/eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.genomic.gdc_realn.bam 8648220570 BAM hg38 59b21a63-9328-491d-b69b-d372e653712e storage1 C3L-06538.RNA-Seq.R1.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79f72bd1-ecb8-4efb-b830-f14ec5f1360d/210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R1_001.fastq.gz 4294397149 FASTQ NA 79f72bd1-ecb8-4efb-b830-f14ec5f1360d storage1 C3L-06538.RNA-Seq.R2.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/680eb667-6251-4746-b73d-cebe3c1282f9/210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R2_001.fastq.gz 4723013354 FASTQ NA 680eb667-6251-4746-b73d-cebe3c1282f9 storage1 +C3L-06538.WXS.Nbc.hg38 C3L-06538 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc427657-d229-491c-9683-14a1a522b955/68e81fcd-1c9d-4f62-a6ad-9b624865181c_wxs_gdc_realn.bam 39922875366 BAM hg38 bc427657-d229-491c-9683-14a1a522b955 storage1 +C3L-06538.WXS.Tbm.hg38 C3L-06538 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8acdf3ea-77e9-446c-9d18-55cbea9f94fc/b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wxs_gdc_realn.bam 34029612018 BAM hg38 8acdf3ea-77e9-446c-9d18-55cbea9f94fc storage1 C3L-06539.RNA-Seq.genomic.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69ca1bbc-413f-4f8d-993e-dd5204819b4c/94d23737-7cc3-4f17-82f8-826576dfc52d.rna_seq.genomic.gdc_realn.bam 8248355657 BAM hg38 69ca1bbc-413f-4f8d-993e-dd5204819b4c storage1 +C3L-06539.RNA-Seq.genomic.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28dd782b-f300-47ba-998e-bf798a37f289/41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.genomic.gdc_realn.bam 8259301597 BAM hg38 28dd782b-f300-47ba-998e-bf798a37f289 storage1 C3L-06539.RNA-Seq.R1.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3dad273f-fe63-445a-b5d4-68775e31b1ad/210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R1_001.fastq.gz 4124506299 FASTQ NA 3dad273f-fe63-445a-b5d4-68775e31b1ad storage1 C3L-06539.RNA-Seq.R2.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7eb624c-5723-4c25-8228-f7cd7a9423c9/210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R2_001.fastq.gz 4580821309 FASTQ NA d7eb624c-5723-4c25-8228-f7cd7a9423c9 storage1 +C3L-06539.WGS.Nbc.hg38 C3L-06539 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/472f4c29-feee-4101-9f40-24a10a33bcc3/e0e01c9d-f823-409e-b875-2d75dc1a577a_wgs_gdc_realn.bam 154159485616 BAM hg38 472f4c29-feee-4101-9f40-24a10a33bcc3 storage1 +C3L-06539.WGS.Tbm.hg38 C3L-06539 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb708ee8-4b29-4e9c-b714-fe5c077a60e7/c9f7d842-f01a-4b20-918a-85ca0baa9b60_wgs_gdc_realn.bam 176935203531 BAM hg38 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 storage1 +C3L-06539.WXS.Nbc.hg38 C3L-06539 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/233aa0b4-a8bc-4fce-9747-82c617215b27/e0e01c9d-f823-409e-b875-2d75dc1a577a_wxs_gdc_realn.bam 38284612628 BAM hg38 233aa0b4-a8bc-4fce-9747-82c617215b27 storage1 +C3L-06539.WXS.Tbm.hg38 C3L-06539 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9f44528-f082-421c-a615-9a5c558d6c69/c9f7d842-f01a-4b20-918a-85ca0baa9b60_wxs_gdc_realn.bam 29737850465 BAM hg38 a9f44528-f082-421c-a615-9a5c558d6c69 storage1 C3L-06540.RNA-Seq.genomic.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8fabc3a-6a8a-43fb-97d1-2c5e36bc6e67/03de62aa-d86a-49e9-9296-921ea84970ed.rna_seq.genomic.gdc_realn.bam 7694043821 BAM hg38 b8fabc3a-6a8a-43fb-97d1-2c5e36bc6e67 storage1 +C3L-06540.RNA-Seq.genomic.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51297306-22f3-420c-990b-847b0faba61d/90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.genomic.gdc_realn.bam 7702628816 BAM hg38 51297306-22f3-420c-990b-847b0faba61d storage1 C3L-06540.RNA-Seq.R1.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3dca2c2-f50b-4088-924c-d1006c1c1bc4/210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R1_001.fastq.gz 3899033724 FASTQ NA e3dca2c2-f50b-4088-924c-d1006c1c1bc4 storage1 C3L-06540.RNA-Seq.R2.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/240d81cf-3707-4eac-b01e-c66dd53b52dc/210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R2_001.fastq.gz 4235744355 FASTQ NA 240d81cf-3707-4eac-b01e-c66dd53b52dc storage1 +C3L-06540.WGS.Nbc.hg38 C3L-06540 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14818528-82a8-4d2c-bf3f-b4eafb4e3c5c/09b7b818-7c8d-41db-b8a2-1b1713603adc_wgs_gdc_realn.bam 185987353424 BAM hg38 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c storage1 +C3L-06540.WGS.Tbm.hg38 C3L-06540 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b58e6f7-133e-46d2-a78b-6d28408c9d3a/8398b90d-3648-401d-a664-6a9c44fca60b_wgs_gdc_realn.bam 174412892546 BAM hg38 6b58e6f7-133e-46d2-a78b-6d28408c9d3a storage1 +C3L-06540.WXS.Nbc.hg38 C3L-06540 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7df2ff58-1123-4d05-99b0-93f8348bc66b/09b7b818-7c8d-41db-b8a2-1b1713603adc_wxs_gdc_realn.bam 30002321666 BAM hg38 7df2ff58-1123-4d05-99b0-93f8348bc66b storage1 +C3L-06540.WXS.Tbm.hg38 C3L-06540 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c28a8145-36cf-4211-9eec-fcfbac21dcc1/8398b90d-3648-401d-a664-6a9c44fca60b_wxs_gdc_realn.bam 28716271335 BAM hg38 c28a8145-36cf-4211-9eec-fcfbac21dcc1 storage1 C3L-06541.RNA-Seq.genomic.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11899561-6bc9-40ed-b9dd-55dc9f937e43/9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.genomic.gdc_realn.bam 8047262491 BAM hg38 11899561-6bc9-40ed-b9dd-55dc9f937e43 storage1 +C3L-06541.RNA-Seq.genomic.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/169081e7-bf5a-421d-beb5-df4dc4fd8ea6/9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.genomic.gdc_realn.bam 8047262491 BAM hg38 169081e7-bf5a-421d-beb5-df4dc4fd8ea6 storage1 C3L-06541.RNA-Seq.R1.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59d3d48b-d378-408b-9065-b5140f3209e5/210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R1_001.fastq.gz 3742877243 FASTQ NA 59d3d48b-d378-408b-9065-b5140f3209e5 storage1 C3L-06541.RNA-Seq.R2.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5636c15e-e465-415d-ad12-6e6240adb9e0/210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R2_001.fastq.gz 4397325711 FASTQ NA 5636c15e-e465-415d-ad12-6e6240adb9e0 storage1 +C3L-06541.WGS.Nbc.hg38 C3L-06541 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/353c9734-73ad-4bed-86b7-524c2d79a4b5/75b3a564-3ce9-482a-8cd6-034484dd5465_wgs_gdc_realn.bam 150355441830 BAM hg38 353c9734-73ad-4bed-86b7-524c2d79a4b5 storage1 +C3L-06541.WGS.Tbm.hg38 C3L-06541 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d821410-5bac-4cc3-acbe-95fcda1364ea/0356d6af-f2ae-47df-a012-ac06b249fbae_wgs_gdc_realn.bam 110319964037 BAM hg38 0d821410-5bac-4cc3-acbe-95fcda1364ea storage1 +C3L-06541.WXS.Nbc.hg38 C3L-06541 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db057121-e94c-4c5c-8c74-c9a5aff26b13/75b3a564-3ce9-482a-8cd6-034484dd5465_wxs_gdc_realn.bam 24375964003 BAM hg38 db057121-e94c-4c5c-8c74-c9a5aff26b13 storage1 +C3L-06541.WXS.Tbm.hg38 C3L-06541 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41fa4fe8-db99-499d-958d-1f8ab3d17427/0356d6af-f2ae-47df-a012-ac06b249fbae_wxs_gdc_realn.bam 43859816354 BAM hg38 41fa4fe8-db99-499d-958d-1f8ab3d17427 storage1 C3L-06542.RNA-Seq.genomic.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f6f44e2-2a43-46bf-b635-e960e48e1f81/f9e4d4a1-924f-4c30-b1eb-a9350c391486.rna_seq.genomic.gdc_realn.bam 7637651699 BAM hg38 0f6f44e2-2a43-46bf-b635-e960e48e1f81 storage1 +C3L-06542.RNA-Seq.genomic.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56c150c2-4022-4ee9-bf16-5031e0ffec55/bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.genomic.gdc_realn.bam 7645693601 BAM hg38 56c150c2-4022-4ee9-bf16-5031e0ffec55 storage1 C3L-06542.RNA-Seq.R1.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc62b62f-c0a1-4ebb-bc4a-d2725f1fe8c6/210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R1_001.fastq.gz 3878804047 FASTQ NA cc62b62f-c0a1-4ebb-bc4a-d2725f1fe8c6 storage1 C3L-06542.RNA-Seq.R2.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1b044d8-b032-4630-9797-923d831a9915/210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R2_001.fastq.gz 4225174935 FASTQ NA e1b044d8-b032-4630-9797-923d831a9915 storage1 +C3L-06542.WGS.Nbc.hg38 C3L-06542 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1835d614-9a70-471e-8179-c103234cb687/1a261104-79db-4f51-8a77-42fe4a12dab2_wgs_gdc_realn.bam 125870394775 BAM hg38 1835d614-9a70-471e-8179-c103234cb687 storage1 +C3L-06542.WGS.Tbm.hg38 C3L-06542 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c5cf68c-fa2b-47ca-968b-88a320d35ac1/6fe2a157-f48e-43fa-806b-4406d5eb94b1_wgs_gdc_realn.bam 153044319610 BAM hg38 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 storage1 +C3L-06542.WXS.Nbc.hg38 C3L-06542 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f706c920-c9fa-47e7-b963-85d22687e70b/1a261104-79db-4f51-8a77-42fe4a12dab2_wxs_gdc_realn.bam 41801479896 BAM hg38 f706c920-c9fa-47e7-b963-85d22687e70b storage1 +C3L-06542.WXS.Tbm.hg38 C3L-06542 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b49db584-c2d9-49ac-9738-9c22259e7629/6fe2a157-f48e-43fa-806b-4406d5eb94b1_wxs_gdc_realn.bam 29783624416 BAM hg38 b49db584-c2d9-49ac-9738-9c22259e7629 storage1 C3L-06543.RNA-Seq.genomic.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90346d05-8fbf-41a9-b0d1-3715808f87d0/7cee06ad-1d2f-4dc5-8205-d2440078b0a3.rna_seq.genomic.gdc_realn.bam 8298692567 BAM hg38 90346d05-8fbf-41a9-b0d1-3715808f87d0 storage1 +C3L-06543.RNA-Seq.genomic.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/549c5e69-8f7b-479e-bd74-68026c65440b/4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.genomic.gdc_realn.bam 8306566715 BAM hg38 549c5e69-8f7b-479e-bd74-68026c65440b storage1 C3L-06543.RNA-Seq.R1.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77523715-551e-4c3b-901b-3fd1c151fe92/210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R1_001.fastq.gz 4115245559 FASTQ NA 77523715-551e-4c3b-901b-3fd1c151fe92 storage1 C3L-06543.RNA-Seq.R2.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d808288-6ab7-42a6-9a1a-1d822136964b/210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R2_001.fastq.gz 4570631944 FASTQ NA 8d808288-6ab7-42a6-9a1a-1d822136964b storage1 +C3L-06543.WGS.Nbc.hg38 C3L-06543 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10a4b333-5ffd-439e-a55a-aa95ac06b469/e362e60c-2f7f-4aa9-8c80-7a72291d4f23_wgs_gdc_realn.bam 168766002144 BAM hg38 10a4b333-5ffd-439e-a55a-aa95ac06b469 storage1 +C3L-06543.WGS.Tbm.hg38 C3L-06543 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/640af29c-4df0-4694-99a3-63b0820bf958/61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wgs_gdc_realn.bam 141040966682 BAM hg38 640af29c-4df0-4694-99a3-63b0820bf958 storage1 +C3L-06625.RNA-Seq.genomic.T.hg38 C3L-06625 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a26b57c7-8834-4051-86c1-b329c6dbe2fd/9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.genomic.gdc_realn.bam 7627098861 BAM hg38 a26b57c7-8834-4051-86c1-b329c6dbe2fd storage1 C3L-06625.RNA-Seq.R1.T C3L-06625 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54aee35f-9cd2-4a3b-9c49-dbffe0677d13/210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ NA 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 storage1 C3L-06625.RNA-Seq.R1.T C3L-06625 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54aee35f-9cd2-4a3b-9c49-dbffe0677d13/210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ NA 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 storage1 C3L-06625.RNA-Seq.R2.T C3L-06625 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a16d6ea-281b-440a-9157-095d8785f68a/210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R2_001.fastq.gz 3833373967 FASTQ NA 4a16d6ea-281b-440a-9157-095d8785f68a storage1 @@ -3754,44 +4251,127 @@ C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Acti C3L-06625.WXS.N.hg38 C3L-06625 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12c76c83-4c16-4016-8594-e04207caf5e5/ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wxs_gdc_realn.bam 37479287643 BAM hg38 12c76c83-4c16-4016-8594-e04207caf5e5 storage1 C3L-06625.WXS.T C3L-06625 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/890457f0-bee4-4471-aab4-2343d2d208a9/CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM hg19 890457f0-bee4-4471-aab4-2343d2d208a9 storage1 C3L-06625.WXS.T.hg38 C3L-06625 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/926f6d61-0f53-4923-96cf-73626b0e0fe7/41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wxs_gdc_realn.bam 32707416253 BAM hg38 926f6d61-0f53-4923-96cf-73626b0e0fe7 storage1 +C3L-06801.RNA-Seq.genomic.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9acc8253-7856-45ec-b0d0-4f159ff28268/cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.genomic.gdc_realn.bam 7113549492 BAM hg38 9acc8253-7856-45ec-b0d0-4f159ff28268 storage1 C3L-06801.RNA-Seq.R1.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c26ae3d-a9de-4c8b-aa18-8cfcb7f7e7fe/211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3398816777 FASTQ NA 6c26ae3d-a9de-4c8b-aa18-8cfcb7f7e7fe storage1 C3L-06801.RNA-Seq.R2.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f66374e3-8299-4707-a67b-3430583f0cf9/211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3657202227 FASTQ NA f66374e3-8299-4707-a67b-3430583f0cf9 storage1 +C3L-06801.WGS.Nbc.hg38 C3L-06801 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/527e15dd-11c6-455b-bf87-8b24bc28b6e1/509bac37-703e-4caf-b54e-1e4ed723f5b9_wgs_gdc_realn.bam 175494235031 BAM hg38 527e15dd-11c6-455b-bf87-8b24bc28b6e1 storage1 +C3L-06801.WGS.Tbm.hg38 C3L-06801 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2325192-7bb3-4f7e-850b-1b1ccb80316b/0777b76c-fbf2-406f-b010-9a63c2eb65c8_wgs_gdc_realn.bam 151138736406 BAM hg38 c2325192-7bb3-4f7e-850b-1b1ccb80316b storage1 +C3L-06801.WXS.Nbc.hg38 C3L-06801 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f260eb2-a3a2-4167-864a-494392e107ef/509bac37-703e-4caf-b54e-1e4ed723f5b9_wxs_gdc_realn.bam 32920465559 BAM hg38 3f260eb2-a3a2-4167-864a-494392e107ef storage1 +C3L-06801.WXS.Tbm.hg38 C3L-06801 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d2f7892-de16-4f47-b622-ea20a319caa1/0777b76c-fbf2-406f-b010-9a63c2eb65c8_wxs_gdc_realn.bam 30117583893 BAM hg38 3d2f7892-de16-4f47-b622-ea20a319caa1 storage1 +C3L-06803.RNA-Seq.genomic.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b5d38df-fe2e-4756-9645-a36ef3e45e95/79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.genomic.gdc_realn.bam 7524313192 BAM hg38 9b5d38df-fe2e-4756-9645-a36ef3e45e95 storage1 C3L-06803.RNA-Seq.R1.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aff4657c-1c93-4991-bf9d-102858d36a82/211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 3755558642 FASTQ NA aff4657c-1c93-4991-bf9d-102858d36a82 storage1 C3L-06803.RNA-Seq.R2.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/696539ea-5c89-4d92-a676-9753068e6958/211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 3965110182 FASTQ NA 696539ea-5c89-4d92-a676-9753068e6958 storage1 +C3L-06803.WGS.Nbc.hg38 C3L-06803 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/887b6d76-aeda-4618-b395-4953f9f27201/fb85a170-079b-4546-8d62-d98880d0892a_wgs_gdc_realn.bam 137097285714 BAM hg38 887b6d76-aeda-4618-b395-4953f9f27201 storage1 +C3L-06803.WGS.Tbm.hg38 C3L-06803 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c457f0cc-58e3-4433-b0ac-ffdef5c4a69a/ad079273-05c6-4e9e-9c99-c9723ff44b2a_wgs_gdc_realn.bam 161825277408 BAM hg38 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a storage1 +C3L-06803.WXS.Nbc.hg38 C3L-06803 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f66e2ee-16bc-449e-af44-0d580e957a50/fb85a170-079b-4546-8d62-d98880d0892a_wxs_gdc_realn.bam 31737986860 BAM hg38 5f66e2ee-16bc-449e-af44-0d580e957a50 storage1 +C3L-06803.WXS.Tbm.hg38 C3L-06803 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1e83679-d777-4421-af92-2bc1cf9ae681/ad079273-05c6-4e9e-9c99-c9723ff44b2a_wxs_gdc_realn.bam 36395937526 BAM hg38 a1e83679-d777-4421-af92-2bc1cf9ae681 storage1 C3L-06806.RNA-Seq.genomic.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0927e99-4cdb-4fdc-ac72-9d45cf5985d3/50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.genomic.gdc_realn.bam 8796614508 BAM hg38 b0927e99-4cdb-4fdc-ac72-9d45cf5985d3 storage1 +C3L-06806.RNA-Seq.genomic.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31923aa6-86eb-4b44-8306-54ea4f5977d5/50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.genomic.gdc_realn.bam 8796614508 BAM hg38 31923aa6-86eb-4b44-8306-54ea4f5977d5 storage1 C3L-06806.RNA-Seq.R1.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5f11d2f-613f-48f1-ac63-f9064be02cb4/210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R1_001.fastq.gz 4331029607 FASTQ NA f5f11d2f-613f-48f1-ac63-f9064be02cb4 storage1 C3L-06806.RNA-Seq.R2.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/585ffa5e-16be-4a73-b6be-685582e95dc2/210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R2_001.fastq.gz 4902540092 FASTQ NA 585ffa5e-16be-4a73-b6be-685582e95dc2 storage1 +C3L-06806.WGS.Nbc.hg38 C3L-06806 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c557241-6ab1-42cb-b964-30c1cf2c62b2/3a30f07b-1d50-4585-832d-9702d446060b_wgs_gdc_realn.bam 204000841502 BAM hg38 0c557241-6ab1-42cb-b964-30c1cf2c62b2 storage1 +C3L-06806.WGS.Tbm.hg38 C3L-06806 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec74a3e3-fe3d-469a-8b73-96f5f2e1539f/2db84bd7-0618-44c7-888f-04649732c477_wgs_gdc_realn.bam 150720677216 BAM hg38 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f storage1 +C3L-06806.WXS.Nbc.hg38 C3L-06806 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf4c8c61-9d59-4a3a-952f-bd5ede4dd1f0/3a30f07b-1d50-4585-832d-9702d446060b_wxs_gdc_realn.bam 34201681879 BAM hg38 bf4c8c61-9d59-4a3a-952f-bd5ede4dd1f0 storage1 +C3L-06806.WXS.Tbm.hg38 C3L-06806 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbd8fb1f-b35d-49c0-b88c-1c79f192c8df/2db84bd7-0618-44c7-888f-04649732c477_wxs_gdc_realn.bam 29155742449 BAM hg38 dbd8fb1f-b35d-49c0-b88c-1c79f192c8df storage1 C3L-06807.RNA-Seq.genomic.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84085952-aa4f-42fe-87e1-e5efb39d877b/1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.genomic.gdc_realn.bam 8337747777 BAM hg38 84085952-aa4f-42fe-87e1-e5efb39d877b storage1 +C3L-06807.RNA-Seq.genomic.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71f4c878-35cc-4003-96c3-9b30604242b8/1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.genomic.gdc_realn.bam 8337747777 BAM hg38 71f4c878-35cc-4003-96c3-9b30604242b8 storage1 C3L-06807.RNA-Seq.R1.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fccb07d3-3428-4b00-ae11-1a0447e36d72/210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R1_001.fastq.gz 3691170140 FASTQ NA fccb07d3-3428-4b00-ae11-1a0447e36d72 storage1 C3L-06807.RNA-Seq.R2.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7500ab8-09a8-4546-9672-945cb3e59038/210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R2_001.fastq.gz 4227720079 FASTQ NA f7500ab8-09a8-4546-9672-945cb3e59038 storage1 +C3L-06807.WGS.Nbc.hg38 C3L-06807 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5e65538-6337-4ca8-80e1-08d7f8916278/c68a5bcd-cb06-4682-9639-359f86ec9dac_wgs_gdc_realn.bam 165305986166 BAM hg38 a5e65538-6337-4ca8-80e1-08d7f8916278 storage1 +C3L-06807.WGS.Tbm.hg38 C3L-06807 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/532cdf3e-715b-41c7-af0f-e9ff9a4fb643/d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wgs_gdc_realn.bam 153701170789 BAM hg38 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 storage1 +C3L-06807.WXS.Nbc.hg38 C3L-06807 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef32ceab-0642-43ae-a9b2-3267328f1ff9/c68a5bcd-cb06-4682-9639-359f86ec9dac_wxs_gdc_realn.bam 37138537545 BAM hg38 ef32ceab-0642-43ae-a9b2-3267328f1ff9 storage1 +C3L-06807.WXS.Tbm.hg38 C3L-06807 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a45f79a-4cdb-4c86-91bb-e82d221fb190/d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wxs_gdc_realn.bam 28299634890 BAM hg38 8a45f79a-4cdb-4c86-91bb-e82d221fb190 storage1 +C3L-06809.RNA-Seq.genomic.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfabc53c-4df4-4610-a45c-64257d3d03d9/7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.genomic.gdc_realn.bam 6365773938 BAM hg38 dfabc53c-4df4-4610-a45c-64257d3d03d9 storage1 C3L-06809.RNA-Seq.R1.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed6cfd64-6e72-42b6-844e-88234f7dbd0f/211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R1_001.fastq.gz 3191057802 FASTQ NA ed6cfd64-6e72-42b6-844e-88234f7dbd0f storage1 C3L-06809.RNA-Seq.R2.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa5593e4-49bc-4567-84aa-3e6ed2214956/211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R2_001.fastq.gz 3380156902 FASTQ NA fa5593e4-49bc-4567-84aa-3e6ed2214956 storage1 +C3L-06809.WGS.Nbc.hg38 C3L-06809 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57d26f1b-6ee3-425e-bab0-a006fab6ce90/f12c5166-abe3-410e-9aea-37ef5d8bbe01_wgs_gdc_realn.bam 132246422085 BAM hg38 57d26f1b-6ee3-425e-bab0-a006fab6ce90 storage1 +C3L-06809.WGS.Tbm.hg38 C3L-06809 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5f641bb-a84b-4cb2-932f-e25c73ef9081/fde4043f-91a8-42b6-8370-c1322ce342a7_wgs_gdc_realn.bam 153751798796 BAM hg38 d5f641bb-a84b-4cb2-932f-e25c73ef9081 storage1 +C3L-06809.WXS.Nbc.hg38 C3L-06809 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b95d946c-ecc7-4fdf-96d6-76d3ee43c96d/f12c5166-abe3-410e-9aea-37ef5d8bbe01_wxs_gdc_realn.bam 20270095113 BAM hg38 b95d946c-ecc7-4fdf-96d6-76d3ee43c96d storage1 +C3L-06809.WXS.Tbm.hg38 C3L-06809 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8d547fc-05e3-482d-8b31-68ce5408887a/fde4043f-91a8-42b6-8370-c1322ce342a7_wxs_gdc_realn.bam 31582854239 BAM hg38 a8d547fc-05e3-482d-8b31-68ce5408887a storage1 +C3L-06951.RNA-Seq.genomic.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d875ab14-6fa7-4323-965b-b2ceefaaa97f/4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.genomic.gdc_realn.bam 10003377970 BAM hg38 d875ab14-6fa7-4323-965b-b2ceefaaa97f storage1 C3L-06951.RNA-Seq.R1.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72612251-54a1-4fc4-a820-484b2c7da4b8/210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R1_001.fastq.gz 4888313496 FASTQ NA 72612251-54a1-4fc4-a820-484b2c7da4b8 storage1 C3L-06951.RNA-Seq.R2.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73c35958-c9f9-474c-bf29-4a69904abece/210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R2_001.fastq.gz 5232313383 FASTQ NA 73c35958-c9f9-474c-bf29-4a69904abece storage1 +C3L-06951.WGS.Nbc.hg38 C3L-06951 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78899104-aff8-41cb-865c-bbcda214cde3/6e106fcb-29f4-4c38-a4d2-920f1483a216_wgs_gdc_realn.bam 132392147301 BAM hg38 78899104-aff8-41cb-865c-bbcda214cde3 storage1 +C3L-06951.WGS.Tbm.hg38 C3L-06951 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/097d3f76-6044-4639-a353-cddbae861463/cf505366-987d-4e91-b5fb-696d2cde908a_wgs_gdc_realn.bam 156050815880 BAM hg38 097d3f76-6044-4639-a353-cddbae861463 storage1 +C3L-06951.WXS.Nbc.hg38 C3L-06951 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df688043-449a-4715-ada1-d3a72f034115/6e106fcb-29f4-4c38-a4d2-920f1483a216_wxs_gdc_realn.bam 51682983387 BAM hg38 df688043-449a-4715-ada1-d3a72f034115 storage1 +C3L-06951.WXS.Tbm.hg38 C3L-06951 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9bae9f55-ce2d-472c-9de6-1cce8a6931fe/cf505366-987d-4e91-b5fb-696d2cde908a_wxs_gdc_realn.bam 29310105335 BAM hg38 9bae9f55-ce2d-472c-9de6-1cce8a6931fe storage1 C3L-06952.RNA-Seq.genomic.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90465dff-783a-41e0-8f9e-c3243ba08112/8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.genomic.gdc_realn.bam 8571025082 BAM hg38 90465dff-783a-41e0-8f9e-c3243ba08112 storage1 +C3L-06952.RNA-Seq.genomic.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/356413dc-97fb-4db0-87a6-506fc0290c62/8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.genomic.gdc_realn.bam 8571025082 BAM hg38 356413dc-97fb-4db0-87a6-506fc0290c62 storage1 C3L-06952.RNA-Seq.R1.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/782c5640-f8b7-45b8-ac5a-76650aa56634/210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R1_001.fastq.gz 3968146646 FASTQ NA 782c5640-f8b7-45b8-ac5a-76650aa56634 storage1 C3L-06952.RNA-Seq.R2.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53e1a623-56d3-4599-b9a1-2d4e77e67906/210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R2_001.fastq.gz 4408260299 FASTQ NA 53e1a623-56d3-4599-b9a1-2d4e77e67906 storage1 +C3L-06952.WGS.Nbc.hg38 C3L-06952 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe83e9be-7e7a-4295-906d-0317b2a405b5/c1f795c9-57d0-4621-9675-cbffdae3e8e2_wgs_gdc_realn.bam 228222566924 BAM hg38 fe83e9be-7e7a-4295-906d-0317b2a405b5 storage1 +C3L-06952.WGS.Tbm.hg38 C3L-06952 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e786c669-ae8d-4f7e-9ff3-a8b674b81574/156bb375-1e32-45ea-b6bb-2c8264042561_wgs_gdc_realn.bam 150043727921 BAM hg38 e786c669-ae8d-4f7e-9ff3-a8b674b81574 storage1 +C3L-06952.WXS.Nbc.hg38 C3L-06952 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6675d018-2b90-40db-9ce3-4a5b08793284/c1f795c9-57d0-4621-9675-cbffdae3e8e2_wxs_gdc_realn.bam 29996042851 BAM hg38 6675d018-2b90-40db-9ce3-4a5b08793284 storage1 +C3L-06952.WXS.Tbm.hg38 C3L-06952 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3076a431-760e-4f15-b24e-c563256de372/156bb375-1e32-45ea-b6bb-2c8264042561_wxs_gdc_realn.bam 37511199516 BAM hg38 3076a431-760e-4f15-b24e-c563256de372 storage1 C3L-06953.RNA-Seq.genomic.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6f8f39c-d247-4c7a-b5db-097892eb8c93/b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.genomic.gdc_realn.bam 8461643378 BAM hg38 d6f8f39c-d247-4c7a-b5db-097892eb8c93 storage1 +C3L-06953.RNA-Seq.genomic.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aeab5b3a-51a4-466e-90ad-08e8b706dac5/b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.genomic.gdc_realn.bam 8461643378 BAM hg38 aeab5b3a-51a4-466e-90ad-08e8b706dac5 storage1 C3L-06953.RNA-Seq.R1.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d86a6e3-615a-4394-991c-d9e3b53524ba/210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R1_001.fastq.gz 4203285851 FASTQ NA 5d86a6e3-615a-4394-991c-d9e3b53524ba storage1 C3L-06953.RNA-Seq.R2.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6aefb82-695a-4f31-9bc4-7b18ad9c12c5/210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R2_001.fastq.gz 4610087193 FASTQ NA c6aefb82-695a-4f31-9bc4-7b18ad9c12c5 storage1 +C3L-06953.WGS.Nbc.hg38 C3L-06953 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afa8c524-60e7-423b-9677-8653c4a5da65/cc7377a7-4292-4a42-888a-59e14942e42f_wgs_gdc_realn.bam 167692914296 BAM hg38 afa8c524-60e7-423b-9677-8653c4a5da65 storage1 +C3L-06953.WGS.Tbm.hg38 C3L-06953 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02b919c1-e7df-495f-8084-65f8a1af6e45/19eadde7-2a40-4880-900d-440197bd5266_wgs_gdc_realn.bam 181530152719 BAM hg38 02b919c1-e7df-495f-8084-65f8a1af6e45 storage1 +C3L-06953.WXS.Nbc.hg38 C3L-06953 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed6f6bd3-3d31-4dd8-8cb8-0bde987c9a1e/cc7377a7-4292-4a42-888a-59e14942e42f_wxs_gdc_realn.bam 38181902951 BAM hg38 ed6f6bd3-3d31-4dd8-8cb8-0bde987c9a1e storage1 +C3L-06953.WXS.Tbm.hg38 C3L-06953 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b586f9bd-1b9f-4d68-8b7c-3b37b97a3725/19eadde7-2a40-4880-900d-440197bd5266_wxs_gdc_realn.bam 33729200165 BAM hg38 b586f9bd-1b9f-4d68-8b7c-3b37b97a3725 storage1 +C3L-06954.RNA-Seq.genomic.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4de3061-8b9c-40fe-bd11-b6eecfab8f07/67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.genomic.gdc_realn.bam 6902144941 BAM hg38 c4de3061-8b9c-40fe-bd11-b6eecfab8f07 storage1 C3L-06954.RNA-Seq.R1.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e69dd94-7aee-4c00-9685-cc4ba3fd648c/211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3449383220 FASTQ NA 6e69dd94-7aee-4c00-9685-cc4ba3fd648c storage1 C3L-06954.RNA-Seq.R2.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a266ecc3-6056-4bf3-b120-43a4c9028a9e/211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3638286868 FASTQ NA a266ecc3-6056-4bf3-b120-43a4c9028a9e storage1 +C3L-06954.WGS.Nbc.hg38 C3L-06954 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee/ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wgs_gdc_realn.bam 188003601209 BAM hg38 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee storage1 +C3L-06954.WGS.Tbm.hg38 C3L-06954 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4aec74c8-8469-4ab7-874e-cd559c14c396/aa274cea-5bc3-419e-905e-3fd377deea83_wgs_gdc_realn.bam 126981110892 BAM hg38 4aec74c8-8469-4ab7-874e-cd559c14c396 storage1 +C3L-06954.WXS.Nbc.hg38 C3L-06954 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82af1ee3-e913-4459-b382-234ff07db7c9/ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wxs_gdc_realn.bam 33673761951 BAM hg38 82af1ee3-e913-4459-b382-234ff07db7c9 storage1 +C3L-06954.WXS.Tbm.hg38 C3L-06954 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6eb8ce2b-7b02-4f76-a9e9-337c110f9143/aa274cea-5bc3-419e-905e-3fd377deea83_wxs_gdc_realn.bam 34659973786 BAM hg38 6eb8ce2b-7b02-4f76-a9e9-337c110f9143 storage1 +C3L-06956.RNA-Seq.genomic.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4638749f-fa56-4155-98a8-eecd9834daa9/d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.genomic.gdc_realn.bam 9556913650 BAM hg38 4638749f-fa56-4155-98a8-eecd9834daa9 storage1 C3L-06956.RNA-Seq.R1.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a2d3cf1-f333-4a81-97ba-debd9fcf5bd9/220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R1_001.fastq.gz 4494920980 FASTQ NA 6a2d3cf1-f333-4a81-97ba-debd9fcf5bd9 storage1 C3L-06956.RNA-Seq.R2.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/118a555b-6ad2-4592-ad23-800e55af36cf/220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R2_001.fastq.gz 4971841013 FASTQ NA 118a555b-6ad2-4592-ad23-800e55af36cf storage1 +C3L-06956.WGS.Nbc.hg38 C3L-06956 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e498503-abe4-4a2e-bd04-c67b0c6f4f21/804b5c18-8967-45ca-bc6c-43194e323041_wgs_gdc_realn.bam 130026449193 BAM hg38 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 storage1 +C3L-06956.WGS.Tpb.hg38 C3L-06956 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8/51774116-cdbd-4aa9-ac9b-acf207f1b92a_wgs_gdc_realn.bam 136257088788 BAM hg38 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 storage1 +C3L-06956.WXS.Nbc.hg38 C3L-06956 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8d8ac5d-64bc-4103-8946-5a5d8a87d717/804b5c18-8967-45ca-bc6c-43194e323041_wxs_gdc_realn.bam 37221881366 BAM hg38 f8d8ac5d-64bc-4103-8946-5a5d8a87d717 storage1 +C3L-06956.WXS.Tpb.hg38 C3L-06956 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d55d74b0-9368-4db1-ad56-d5a2bfa515bb/51774116-cdbd-4aa9-ac9b-acf207f1b92a_wxs_gdc_realn.bam 32868413019 BAM hg38 d55d74b0-9368-4db1-ad56-d5a2bfa515bb storage1 +C3L-06960.RNA-Seq.genomic.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66d47de4-8611-4a22-b172-b8d547c8e63e/cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.genomic.gdc_realn.bam 7033891116 BAM hg38 66d47de4-8611-4a22-b172-b8d547c8e63e storage1 C3L-06960.RNA-Seq.R1.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/15059745-078d-4e41-a58e-3aabce6b8e30/211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3385464526 FASTQ NA 15059745-078d-4e41-a58e-3aabce6b8e30 storage1 C3L-06960.RNA-Seq.R2.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4495785-79a6-4be9-a9eb-1d45af1c84a3/211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3595422587 FASTQ NA d4495785-79a6-4be9-a9eb-1d45af1c84a3 storage1 +C3L-06960.WGS.Nbc.hg38 C3L-06960 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/829aaac7-f4bf-464c-8823-3a474e550f29/46a69e2f-7525-48ee-9e1e-460646c051a1_wgs_gdc_realn.bam 133034482233 BAM hg38 829aaac7-f4bf-464c-8823-3a474e550f29 storage1 +C3L-06960.WGS.Tpb.hg38 C3L-06960 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71fada9d-8485-4d3a-bd18-413e4a5ccd49/cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wgs_gdc_realn.bam 131643530554 BAM hg38 71fada9d-8485-4d3a-bd18-413e4a5ccd49 storage1 +C3L-06960.WXS.Nbc.hg38 C3L-06960 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08a63ff1-95e7-4eb4-9a5e-51bff51f2b51/46a69e2f-7525-48ee-9e1e-460646c051a1_wxs_gdc_realn.bam 38170724026 BAM hg38 08a63ff1-95e7-4eb4-9a5e-51bff51f2b51 storage1 +C3L-06960.WXS.Tpb.hg38 C3L-06960 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38d40850-2603-450c-8477-d3744bf24f22/cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wxs_gdc_realn.bam 32113200802 BAM hg38 38d40850-2603-450c-8477-d3744bf24f22 storage1 +C3L-06981.RNA-Seq.genomic.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c1b4b23-bc6b-46e9-b814-531b57e18dec/dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.genomic.gdc_realn.bam 7572644391 BAM hg38 1c1b4b23-bc6b-46e9-b814-531b57e18dec storage1 C3L-06981.RNA-Seq.R1.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11b4e608-a77f-4c41-9687-928b46e0844a/211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R1_001.fastq.gz 3818718609 FASTQ NA 11b4e608-a77f-4c41-9687-928b46e0844a storage1 C3L-06981.RNA-Seq.R2.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e6c8a6fe-6bba-4ed2-aec5-ba81545f6a4f/211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R2_001.fastq.gz 4026831718 FASTQ NA e6c8a6fe-6bba-4ed2-aec5-ba81545f6a4f storage1 +C3L-06981.WGS.Nbc.hg38 C3L-06981 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ab67fa3-1ce9-4d82-920c-c2e87528b007/4c79c53a-2718-4547-a290-048841fd0614_wgs_gdc_realn.bam 149538484177 BAM hg38 7ab67fa3-1ce9-4d82-920c-c2e87528b007 storage1 +C3L-06981.WGS.Tpb.hg38 C3L-06981 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ec0d8c2-3a7d-4579-b850-91811dc93dfd/8f00074a-8287-4c6c-8cff-42c27aac2504_wgs_gdc_realn.bam 135833195776 BAM hg38 9ec0d8c2-3a7d-4579-b850-91811dc93dfd storage1 +C3L-06981.WXS.Nbc.hg38 C3L-06981 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77f8c27e-925e-41f1-b90f-d9045b0e62ff/4c79c53a-2718-4547-a290-048841fd0614_wxs_gdc_realn.bam 43986216038 BAM hg38 77f8c27e-925e-41f1-b90f-d9045b0e62ff storage1 +C3L-06981.WXS.Tpb.hg38 C3L-06981 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98fcca5b-037d-4c84-b645-694cb68bf00b/8f00074a-8287-4c6c-8cff-42c27aac2504_wxs_gdc_realn.bam 43056405894 BAM hg38 98fcca5b-037d-4c84-b645-694cb68bf00b storage1 +C3L-06982.RNA-Seq.genomic.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e3c51fa-c9b5-4611-a5bf-ebabbc183fd7/393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.genomic.gdc_realn.bam 6920066479 BAM hg38 2e3c51fa-c9b5-4611-a5bf-ebabbc183fd7 storage1 C3L-06982.RNA-Seq.R1.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da3e229b-d868-4f5f-b075-be1171998087/211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R1_001.fastq.gz 3474697330 FASTQ NA da3e229b-d868-4f5f-b075-be1171998087 storage1 C3L-06982.RNA-Seq.R2.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29246746-6940-47e6-b599-3f13ef906ad9/211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R2_001.fastq.gz 3682404957 FASTQ NA 29246746-6940-47e6-b599-3f13ef906ad9 storage1 +C3L-06982.WGS.Nbc.hg38 C3L-06982 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f6aee43-68f8-4ddb-aded-5a52920ee9d4/121b27dd-434f-47df-9e3e-e161c746cc01_wgs_gdc_realn.bam 136049604152 BAM hg38 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 storage1 +C3L-06982.WGS.Tpb.hg38 C3L-06982 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1bf7909e-23fb-418e-b3a8-957be0b608ba/7ef5b7fc-04af-418d-9164-eceda84feba7_wgs_gdc_realn.bam 151091836312 BAM hg38 1bf7909e-23fb-418e-b3a8-957be0b608ba storage1 +C3L-06982.WXS.Nbc.hg38 C3L-06982 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b3e1f0d-f82b-40b7-a91f-cf1a46376849/121b27dd-434f-47df-9e3e-e161c746cc01_wxs_gdc_realn.bam 32601152333 BAM hg38 1b3e1f0d-f82b-40b7-a91f-cf1a46376849 storage1 +C3L-06982.WXS.Tpb.hg38 C3L-06982 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dde4d746-46a9-41bd-a9df-9e77ce0a2f49/7ef5b7fc-04af-418d-9164-eceda84feba7_wxs_gdc_realn.bam 41263998537 BAM hg38 dde4d746-46a9-41bd-a9df-9e77ce0a2f49 storage1 +C3L-06983.RNA-Seq.genomic.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5fca9d7-8f46-4703-963d-88fe9f1cd1a1/8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.genomic.gdc_realn.bam 7179916641 BAM hg38 b5fca9d7-8f46-4703-963d-88fe9f1cd1a1 storage1 C3L-06983.RNA-Seq.R1.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/26518143-efc1-4a56-aa1e-c242a0f31641/211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 3740492542 FASTQ NA 26518143-efc1-4a56-aa1e-c242a0f31641 storage1 C3L-06983.RNA-Seq.R2.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4642bc52-9725-4985-98d7-97a3c9ba89f5/211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 3943177791 FASTQ NA 4642bc52-9725-4985-98d7-97a3c9ba89f5 storage1 +C3L-06983.WGS.Nbc.hg38 C3L-06983 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69d8818f-a69e-4afa-a106-5bcbeece0a49/64b0012c-ff3b-4930-879c-11ad70615533_wgs_gdc_realn.bam 172535418672 BAM hg38 69d8818f-a69e-4afa-a106-5bcbeece0a49 storage1 +C3L-06983.WGS.Tpb.hg38 C3L-06983 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e2921db-5243-4ee6-8d9b-07ecef59fa12/e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wgs_gdc_realn.bam 132091769285 BAM hg38 1e2921db-5243-4ee6-8d9b-07ecef59fa12 storage1 +C3L-06983.WXS.Nbc.hg38 C3L-06983 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65286f62-a5d2-444d-b95f-d650dc8a2f38/64b0012c-ff3b-4930-879c-11ad70615533_wxs_gdc_realn.bam 37245222092 BAM hg38 65286f62-a5d2-444d-b95f-d650dc8a2f38 storage1 +C3L-06983.WXS.Tpb.hg38 C3L-06983 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/468b389b-7174-45a6-b3ce-2db7d0c4eca8/e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wxs_gdc_realn.bam 33458404342 BAM hg38 468b389b-7174-45a6-b3ce-2db7d0c4eca8 storage1 +C3L-06984.RNA-Seq.genomic.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eaad2437-3ea7-4fb8-9e41-c96bf66dbaa4/27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.genomic.gdc_realn.bam 7941234065 BAM hg38 eaad2437-3ea7-4fb8-9e41-c96bf66dbaa4 storage1 C3L-06984.RNA-Seq.R1.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9020348-4ac7-45b2-8b26-0f3600eea6be/211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R1_001.fastq.gz 3897342018 FASTQ NA c9020348-4ac7-45b2-8b26-0f3600eea6be storage1 C3L-06984.RNA-Seq.R2.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d80c3794-a9dc-4b1b-8acc-12c57ffbe287/211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R2_001.fastq.gz 4137799210 FASTQ NA d80c3794-a9dc-4b1b-8acc-12c57ffbe287 storage1 +C3L-06984.WGS.Nbc.hg38 C3L-06984 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b123d9-9d59-4697-82bf-9db318649bb3/b0c55a80-01d8-42eb-8047-5299de48ffc8_wgs_gdc_realn.bam 479825047073 BAM hg38 65b123d9-9d59-4697-82bf-9db318649bb3 storage1 +C3L-06984.WGS.Tpb.hg38 C3L-06984 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc89ef04-c297-4432-a134-46486e9e8dcb/a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wgs_gdc_realn.bam 155235972975 BAM hg38 dc89ef04-c297-4432-a134-46486e9e8dcb storage1 +C3L-06984.WXS.Nbc.hg38 C3L-06984 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7810bf2c-1091-45bc-b9e5-9814def4ef7f/b0c55a80-01d8-42eb-8047-5299de48ffc8_wxs_gdc_realn.bam 23341344380 BAM hg38 7810bf2c-1091-45bc-b9e5-9814def4ef7f storage1 +C3L-06984.WXS.Tpb.hg38 C3L-06984 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/699aab96-8cd5-480d-8c76-554d4d1a1ba8/a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wxs_gdc_realn.bam 27834661525 BAM hg38 699aab96-8cd5-480d-8c76-554d4d1a1ba8 storage1 +C3L-07012.RNA-Seq.genomic.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3e8149a-728b-4002-aacb-f008d74e1e12/c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.genomic.gdc_realn.bam 6864057625 BAM hg38 f3e8149a-728b-4002-aacb-f008d74e1e12 storage1 C3L-07012.RNA-Seq.R1.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bed0b6b6-1024-4b88-9ccd-f4702700ff3f/211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R1_001.fastq.gz 3467313065 FASTQ NA bed0b6b6-1024-4b88-9ccd-f4702700ff3f storage1 C3L-07012.RNA-Seq.R2.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b57f8ce-1e4c-4f0d-9d81-370bb7a90774/211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R2_001.fastq.gz 3692173513 FASTQ NA 7b57f8ce-1e4c-4f0d-9d81-370bb7a90774 storage1 +C3L-07012.WXS.Nbc.hg38 C3L-07012 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64e2bdb1-f10f-420d-a03e-60e7d01af376/ec411e25-2a11-4cc9-aaea-806a5e34a08d_wxs_gdc_realn.bam 31960837320 BAM hg38 64e2bdb1-f10f-420d-a03e-60e7d01af376 storage1 +C3L-07012.WXS.Tbm.hg38 C3L-07012 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c2f3c3e-b9b1-4215-bece-7fbfaa266226/43982394-4fd8-4b39-88b0-fd5418fabda9_wxs_gdc_realn.bam 42024870132 BAM hg38 6c2f3c3e-b9b1-4215-bece-7fbfaa266226 storage1 +C3L-07013.RNA-Seq.genomic.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70d345a0-0a2e-4c75-9920-14c36791d713/33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.genomic.gdc_realn.bam 9223432526 BAM hg38 70d345a0-0a2e-4c75-9920-14c36791d713 storage1 C3L-07013.RNA-Seq.R1.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3/211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3609610481 FASTQ NA 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 storage1 C3L-07013.RNA-Seq.R2.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1023c6f2-892a-4949-82ec-e92440e8f394/211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4145611122 FASTQ NA 1023c6f2-892a-4949-82ec-e92440e8f394 storage1 +C3L-07013.WGS.Nbc.hg38 C3L-07013 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/998c64c5-cac5-473d-a385-8c99522cf665/2cfc39c7-9454-401a-b69a-5300bbb3093a_wgs_gdc_realn.bam 172603541079 BAM hg38 998c64c5-cac5-473d-a385-8c99522cf665 storage1 +C3L-07013.WGS.Tbm.hg38 C3L-07013 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56965835-c74a-4372-9f42-4bb4fe46ae3a/516a8b14-1a11-46a8-abec-0d89c4766b89_wgs_gdc_realn.bam 403743062329 BAM hg38 56965835-c74a-4372-9f42-4bb4fe46ae3a storage1 +C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d83953f-9d59-45fd-9f1c-48d917f0efe9/2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM hg38 6d83953f-9d59-45fd-9f1c-48d917f0efe9 storage1 +C3L-07013.WXS.Tbm.hg38 C3L-07013 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77b57be8-82b9-4fbd-94cf-cdb1624b219c/516a8b14-1a11-46a8-abec-0d89c4766b89_wxs_gdc_realn.bam 35353671823 BAM hg38 77b57be8-82b9-4fbd-94cf-cdb1624b219c storage1 C3L-07032.RNA-Seq.R1.A C3L-07032 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88ba9750-4977-49cb-9058-c68e1b1b7570/200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ NA 88ba9750-4977-49cb-9058-c68e1b1b7570 storage1 C3L-07032.RNA-Seq.R2.A C3L-07032 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f37f4fc1-e819-471b-8ad1-0bf07194d51f/200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R2_001.fastq.gz 4600968470 FASTQ NA f37f4fc1-e819-471b-8ad1-0bf07194d51f storage1 C3L-07033.RNA-Seq.R1.A C3L-07033 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37537c02-5de7-4494-ae9e-e4e717f391fb/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R1_001.fastq.gz 4531104702 FASTQ NA 37537c02-5de7-4494-ae9e-e4e717f391fb storage1 @@ -3804,6 +4384,7 @@ C3L-07036.RNA-Seq.R1.A C3L-07036 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab C3L-07036.RNA-Seq.R2.A C3L-07036 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55668996-4f4e-4508-9152-634da507607d/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ NA 55668996-4f4e-4508-9152-634da507607d storage1 C3L-07037.RNA-Seq.R1.A C3L-07037 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3399328b-16f5-4c7a-8e1f-338368645ed8/200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ NA 3399328b-16f5-4c7a-8e1f-338368645ed8 storage1 C3L-07037.RNA-Seq.R2.A C3L-07037 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db70a6b8-672d-4a13-bd16-bd52d87843fe/200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ NA db70a6b8-672d-4a13-bd16-bd52d87843fe storage1 +C3L-07202.RNA-Seq.genomic.T.hg38 C3L-07202 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f419ef07-3477-4e9c-8703-cdf75eabe2d3/47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.genomic.gdc_realn.bam 10126285337 BAM hg38 f419ef07-3477-4e9c-8703-cdf75eabe2d3 storage1 C3L-07202.RNA-Seq.R1.T C3L-07202 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d2a4b38-4741-48ac-bd06-58e5a7397594/210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ NA 0d2a4b38-4741-48ac-bd06-58e5a7397594 storage1 C3L-07202.RNA-Seq.R1.T C3L-07202 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d2a4b38-4741-48ac-bd06-58e5a7397594/210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ NA 0d2a4b38-4741-48ac-bd06-58e5a7397594 storage1 C3L-07202.RNA-Seq.R2.T C3L-07202 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e0f8f05-b887-4c26-b196-f8d137d04b38/210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R2_001.fastq.gz 5307823033 FASTQ NA 9e0f8f05-b887-4c26-b196-f8d137d04b38 storage1 @@ -3816,6 +4397,7 @@ C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Acti C3L-07202.WXS.N.hg38 C3L-07202 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d21eff9-b0d4-40dd-ad5d-fd6387a07eed/9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wxs_gdc_realn.bam 36976133990 BAM hg38 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed storage1 C3L-07202.WXS.T C3L-07202 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08c3554c-d4d2-4e22-a091-2a8a22a88d90/CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM hg19 08c3554c-d4d2-4e22-a091-2a8a22a88d90 storage1 C3L-07202.WXS.T.hg38 C3L-07202 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c4c8930-d564-4e1a-97bd-5971d536af18/ce1dba67-d732-46e3-9e72-096f6f0b75b9_wxs_gdc_realn.bam 35323200367 BAM hg38 5c4c8930-d564-4e1a-97bd-5971d536af18 storage1 +C3L-07213.RNA-Seq.genomic.T.hg38 C3L-07213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/002571e9-bcdb-4e21-8cd1-674eacf7a304/327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.genomic.gdc_realn.bam 7216907422 BAM hg38 002571e9-bcdb-4e21-8cd1-674eacf7a304 storage1 C3L-07213.RNA-Seq.R1.T C3L-07213 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3414943-3507-49d3-8c9f-c50c7721b209/210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ NA a3414943-3507-49d3-8c9f-c50c7721b209 storage1 C3L-07213.RNA-Seq.R1.T C3L-07213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3414943-3507-49d3-8c9f-c50c7721b209/210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ NA a3414943-3507-49d3-8c9f-c50c7721b209 storage1 C3L-07213.RNA-Seq.R2.T C3L-07213 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea6ad82f-b787-4ee4-820c-f4b30dd9d61c/210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R2_001.fastq.gz 3605214139 FASTQ NA ea6ad82f-b787-4ee4-820c-f4b30dd9d61c storage1 @@ -3828,12 +4410,26 @@ C3L-07213.WXS.N C3L-07213 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Acti C3L-07213.WXS.N.hg38 C3L-07213 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51e744f3-1253-44bf-9b98-c26271785d96/64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wxs_gdc_realn.bam 33733613698 BAM hg38 51e744f3-1253-44bf-9b98-c26271785d96 storage1 C3L-07213.WXS.T C3L-07213 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b215bb0-a079-4c59-b74a-c3263ccfe118/CPT0407970010.WholeExome.RP-1303.bam 20738364712 BAM hg19 6b215bb0-a079-4c59-b74a-c3263ccfe118 storage1 C3L-07213.WXS.T.hg38 C3L-07213 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57461fc1-881f-4b14-9c8c-6c795a225e1f/63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wxs_gdc_realn.bam 29144496069 BAM hg38 57461fc1-881f-4b14-9c8c-6c795a225e1f storage1 +C3L-07437.RNA-Seq.genomic.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31d49634-483a-4442-96ff-f9c8d1b6d782/26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.genomic.gdc_realn.bam 7644508104 BAM hg38 31d49634-483a-4442-96ff-f9c8d1b6d782 storage1 C3L-07437.RNA-Seq.R1.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19f81621-5e25-4547-9d95-f56513c37ea3/211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 3625194988 FASTQ NA 19f81621-5e25-4547-9d95-f56513c37ea3 storage1 C3L-07437.RNA-Seq.R2.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37df23e8-805f-4e27-85cd-dc39f8570266/211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4118264722 FASTQ NA 37df23e8-805f-4e27-85cd-dc39f8570266 storage1 +C3L-07437.WGS.Nbc.hg38 C3L-07437 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f2b71bd-804b-4dbb-9d74-3539784d34e4/98dffd8c-fa8d-4a22-8aa7-340942a012dd_wgs_gdc_realn.bam 133771417041 BAM hg38 7f2b71bd-804b-4dbb-9d74-3539784d34e4 storage1 +C3L-07437.WGS.Tpb.hg38 C3L-07437 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8a63078-67cb-4929-afe2-4ab723ea9327/37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wgs_gdc_realn.bam 184732398408 BAM hg38 b8a63078-67cb-4929-afe2-4ab723ea9327 storage1 +C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d79233e-307d-4835-b070-47feba860d01/98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM hg38 2d79233e-307d-4835-b070-47feba860d01 storage1 +C3L-07437.WXS.Tpb.hg38 C3L-07437 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c030fb7f-77a4-4c1f-8a7e-06a6f91bef61/37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wxs_gdc_realn.bam 36014507825 BAM hg38 c030fb7f-77a4-4c1f-8a7e-06a6f91bef61 storage1 +C3L-07439.RNA-Seq.genomic.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1031f657-e8f4-4efd-84ac-cc2b00760f72/212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.genomic.gdc_realn.bam 7018682144 BAM hg38 1031f657-e8f4-4efd-84ac-cc2b00760f72 storage1 C3L-07439.RNA-Seq.R1.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8506fcf0-4ced-4a2a-90ed-878fa8d0f751/211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R1_001.fastq.gz 3579652035 FASTQ NA 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 storage1 C3L-07439.RNA-Seq.R2.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/691147a6-204e-4cfc-acf0-16b432c7ed3d/211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R2_001.fastq.gz 3786729975 FASTQ NA 691147a6-204e-4cfc-acf0-16b432c7ed3d storage1 +C3L-07439.WGS.Nbc.hg38 C3L-07439 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f38803a-d993-4cf9-a78b-121bb76b10d0/0efd2a71-a26d-41cf-99b4-dd0438320771_wgs_gdc_realn.bam 154859851406 BAM hg38 8f38803a-d993-4cf9-a78b-121bb76b10d0 storage1 +C3L-07439.WGS.Tpb.hg38 C3L-07439 AML WGS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8607566-c0aa-40a6-9b90-263e0ab072b1/97c06526-e9d5-4da9-9a93-f56443ea8c0b_wgs_gdc_realn.bam 149168323555 BAM hg38 e8607566-c0aa-40a6-9b90-263e0ab072b1 storage1 +C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eed05d67-1bf7-436f-bfdb-b07dd6beb964/0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM hg38 eed05d67-1bf7-436f-bfdb-b07dd6beb964 storage1 +C3L-07439.WXS.Tpb.hg38 C3L-07439 AML WXS tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30/97c06526-e9d5-4da9-9a93-f56443ea8c0b_wxs_gdc_realn.bam 34896018172 BAM hg38 c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30 storage1 +C3L-07490.RNA-Seq.genomic.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/deb0c477-4194-44c3-9ffc-79e0d217c575/bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.genomic.gdc_realn.bam 8865670253 BAM hg38 deb0c477-4194-44c3-9ffc-79e0d217c575 storage1 C3L-07490.RNA-Seq.R1.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ebf6805-a5c8-43d5-8fee-730861c13580/210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 3720404856 FASTQ NA 2ebf6805-a5c8-43d5-8fee-730861c13580 storage1 C3L-07490.RNA-Seq.R2.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3215eaf9-a581-4e1b-b71b-3c96b7876cba/210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4031405226 FASTQ NA 3215eaf9-a581-4e1b-b71b-3c96b7876cba storage1 +C3L-07490.WGS.Nbc.hg38 C3L-07490 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d/c502ce9b-dc6f-4707-bfdb-b16ec51de8b9_wgs_gdc_realn.bam 203974244131 BAM hg38 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d storage1 +C3L-07490.WGS.Tbm.hg38 C3L-07490 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/036102b0-a019-45e8-b9db-ea99632f6ad5/62192ce0-2d9a-46d0-95a5-cd830486ea9c_wgs_gdc_realn.bam 176588748562 BAM hg38 036102b0-a019-45e8-b9db-ea99632f6ad5 storage1 +C3L-07611.RNA-Seq.genomic.T.hg38 C3L-07611 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b301d6a-175a-42f8-a550-0f2ed137d045/a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.genomic.gdc_realn.bam 8082724853 BAM hg38 2b301d6a-175a-42f8-a550-0f2ed137d045 storage1 C3L-07611.RNA-Seq.R1.T C3L-07611 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a19a4590-1bba-4407-8833-4c424dbd4e7a/210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ NA a19a4590-1bba-4407-8833-4c424dbd4e7a storage1 C3L-07611.RNA-Seq.R1.T C3L-07611 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a19a4590-1bba-4407-8833-4c424dbd4e7a/210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ NA a19a4590-1bba-4407-8833-4c424dbd4e7a storage1 C3L-07611.RNA-Seq.R2.T C3L-07611 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/715c0803-92be-4427-84a0-318fb948c958/210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R2_001.fastq.gz 4019885625 FASTQ NA 715c0803-92be-4427-84a0-318fb948c958 storage1 @@ -4335,14 +4931,32 @@ C3N-00647.RNA-Seq.R1.A C3N-00647 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-00647.RNA-Seq.R1.T C3N-00647 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ff40b7b-a248-4450-83f0-fa2d4ab953e5/190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3001959351 FASTQ NA 6ff40b7b-a248-4450-83f0-fa2d4ab953e5 storage1 C3N-00647.RNA-Seq.R2.A C3N-00647 CCRCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/686db238-4c69-4121-bfe6-1068f0b41ffb/190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R2_001.fastq.gz 4267603425 FASTQ NA 686db238-4c69-4121-bfe6-1068f0b41ffb storage1 C3N-00647.RNA-Seq.R2.T C3N-00647 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4518b250-94cf-447c-910e-a7a1d5a39dd6/190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3277118265 FASTQ NA 4518b250-94cf-447c-910e-a7a1d5a39dd6 storage1 +C3N-00651.RNA-Seq.genomic.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95909fff-4b0d-4997-9d6c-0b2856f485a7/6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.genomic.gdc_realn.bam 7288669934 BAM hg38 95909fff-4b0d-4997-9d6c-0b2856f485a7 storage1 C3N-00651.RNA-Seq.R1.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d2903bf-750c-414c-ae65-b73f000afdd5/211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R1_001.fastq.gz 3593053427 FASTQ NA 3d2903bf-750c-414c-ae65-b73f000afdd5 storage1 C3N-00651.RNA-Seq.R2.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f438bff-6f91-4102-ba36-a6fb12ff7561/211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R2_001.fastq.gz 3851693751 FASTQ NA 1f438bff-6f91-4102-ba36-a6fb12ff7561 storage1 +C3N-00651.WXS.Nbc.hg38 C3N-00651 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a23b98c-d20b-4f53-b383-2649a57d6fd6/342bdbdb-2148-431d-ad39-6140d9c335fa_wxs_gdc_realn.bam 32128775184 BAM hg38 1a23b98c-d20b-4f53-b383-2649a57d6fd6 storage1 +C3N-00651.WXS.Tbm.hg38 C3N-00651 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dabeb10c-d42c-4221-846a-63824ffc31ee/a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wxs_gdc_realn.bam 35473400704 BAM hg38 dabeb10c-d42c-4221-846a-63824ffc31ee storage1 +C3N-00656.RNA-Seq.genomic.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/874999a1-5ad0-4460-9587-06eb7a2fad92/d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.genomic.gdc_realn.bam 7838576260 BAM hg38 874999a1-5ad0-4460-9587-06eb7a2fad92 storage1 C3N-00656.RNA-Seq.R1.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09c7e727-ce2c-490c-b68c-b07559b752a2/211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R1_001.fastq.gz 3964756015 FASTQ NA 09c7e727-ce2c-490c-b68c-b07559b752a2 storage1 C3N-00656.RNA-Seq.R2.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc595190-cac9-45b0-8b20-c0155c59e122/211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R2_001.fastq.gz 4234313784 FASTQ NA cc595190-cac9-45b0-8b20-c0155c59e122 storage1 +C3N-00656.WGS.Nbc.hg38 C3N-00656 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71add2cb-73d9-4aa3-8025-8fc9a58267b4/908d86b1-40e5-4552-a1d6-f0d745fad499_wgs_gdc_realn.bam 125888783679 BAM hg38 71add2cb-73d9-4aa3-8025-8fc9a58267b4 storage1 +C3N-00656.WGS.Tbm.hg38 C3N-00656 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c0204f8e-861d-4005-a7af-9a9f9cac802a/4af4dacb-1e3d-4e55-b504-e78b2c17136a_wgs_gdc_realn.bam 143462709432 BAM hg38 c0204f8e-861d-4005-a7af-9a9f9cac802a storage1 +C3N-00656.WXS.Nbc.hg38 C3N-00656 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1233380f-2cb7-4050-a8e5-758c40fba5f1/908d86b1-40e5-4552-a1d6-f0d745fad499_wxs_gdc_realn.bam 40618481853 BAM hg38 1233380f-2cb7-4050-a8e5-758c40fba5f1 storage1 +C3N-00656.WXS.Tbm.hg38 C3N-00656 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b33a9ba-d8fa-4b96-8e1c-6f35463ef1eb/4af4dacb-1e3d-4e55-b504-e78b2c17136a_wxs_gdc_realn.bam 89882477241 BAM hg38 0b33a9ba-d8fa-4b96-8e1c-6f35463ef1eb storage1 +C3N-00659.RNA-Seq.genomic.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/672f2344-8119-40ea-a097-a52904d34e09/67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.genomic.gdc_realn.bam 7737834452 BAM hg38 672f2344-8119-40ea-a097-a52904d34e09 storage1 C3N-00659.RNA-Seq.R1.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c8e76d2-3765-43ef-8db4-bd090133aa01/211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R1_001.fastq.gz 3738714987 FASTQ NA 0c8e76d2-3765-43ef-8db4-bd090133aa01 storage1 C3N-00659.RNA-Seq.R2.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bab7c676-7656-49e6-ae18-b8d29ce221be/211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R2_001.fastq.gz 4015190558 FASTQ NA bab7c676-7656-49e6-ae18-b8d29ce221be storage1 +C3N-00659.WGS.Nbc.hg38 C3N-00659 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46eb5e4a-885c-49c1-a218-4deb4e9d2f08/46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wgs_gdc_realn.bam 160385803505 BAM hg38 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 storage1 +C3N-00659.WGS.Tbm.hg38 C3N-00659 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fca0608-132e-41e7-8103-0d121e45004d/4045e55e-d312-47ae-a853-1ff6f59e65d3_wgs_gdc_realn.bam 146159152536 BAM hg38 6fca0608-132e-41e7-8103-0d121e45004d storage1 +C3N-00659.WXS.Nbc.hg38 C3N-00659 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e7a838c-8033-4371-942f-572da8bb1aee/46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wxs_gdc_realn.bam 33227332623 BAM hg38 9e7a838c-8033-4371-942f-572da8bb1aee storage1 +C3N-00659.WXS.Tbm.hg38 C3N-00659 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7aaddb3-f740-4b16-8460-d101844bf612/4045e55e-d312-47ae-a853-1ff6f59e65d3_wxs_gdc_realn.bam 35040276552 BAM hg38 f7aaddb3-f740-4b16-8460-d101844bf612 storage1 +C3N-00660.RNA-Seq.genomic.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92abdc6f-d606-44bf-899e-227f6566181d/a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.genomic.gdc_realn.bam 9414231134 BAM hg38 92abdc6f-d606-44bf-899e-227f6566181d storage1 C3N-00660.RNA-Seq.R1.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33eae1fa-1a21-4b09-a234-53c313f73113/210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R1_001.fastq.gz 4431111003 FASTQ NA 33eae1fa-1a21-4b09-a234-53c313f73113 storage1 C3N-00660.RNA-Seq.R2.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/029b0833-f4d5-4b3f-a5ae-1ffcf2da4470/210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R2_001.fastq.gz 4567963160 FASTQ NA 029b0833-f4d5-4b3f-a5ae-1ffcf2da4470 storage1 +C3N-00660.WGS.Nbc.hg38 C3N-00660 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d340b8f-1f8e-4c6a-91b1-dd502378d273/606201ec-ba28-49e9-b880-7d209c3e763c_wgs_gdc_realn.bam 152580396100 BAM hg38 6d340b8f-1f8e-4c6a-91b1-dd502378d273 storage1 +C3N-00660.WGS.Tbm.hg38 C3N-00660 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6819867-14ed-436d-aaa6-e87e5ffce392/7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wgs_gdc_realn.bam 187541869233 BAM hg38 f6819867-14ed-436d-aaa6-e87e5ffce392 storage1 +C3N-00660.WXS.Nbc.hg38 C3N-00660 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/becfee83-3d85-4f28-9613-a0c26a6613d3/606201ec-ba28-49e9-b880-7d209c3e763c_wxs_gdc_realn.bam 50418874518 BAM hg38 becfee83-3d85-4f28-9613-a0c26a6613d3 storage1 +C3N-00660.WXS.Tbm.hg38 C3N-00660 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4b3a652-df94-426e-923f-ef298f0f164e/7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wxs_gdc_realn.bam 32898969714 BAM hg38 e4b3a652-df94-426e-923f-ef298f0f164e storage1 C3N-00661.RNA-Seq.R1.T C3N-00661 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f21d54f-4e17-4dd1-8e30-aa61b33dfa23/171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4280820344 FASTQ NA 0f21d54f-4e17-4dd1-8e30-aa61b33dfa23 storage1 C3N-00661.RNA-Seq.R2.T C3N-00661 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb42cdf1-e194-4a1b-8bc8-64238ecc880b/171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4715271403 FASTQ NA cb42cdf1-e194-4a1b-8bc8-64238ecc880b storage1 C3N-00662.RNA-Seq.R1.T C3N-00662 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe0a5bd8-4326-43e3-83ec-db254421bb70/171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3857129343 FASTQ NA fe0a5bd8-4326-43e3-83ec-db254421bb70 storage1 @@ -4351,13 +4965,26 @@ C3N-00663.RNA-Seq.R1.T C3N-00663 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-00663.RNA-Seq.R2.T C3N-00663 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88fd4df9-3f7e-43df-8e34-e5a2f62d60a9/171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R2_001.fastq.gz 4624075046 FASTQ NA 88fd4df9-3f7e-43df-8e34-e5a2f62d60a9 storage1 C3N-00665.RNA-Seq.R1.T C3N-00665 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/949887f9-0e80-4e58-a463-e2f4eca6f344/171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R1_001.fastq.gz 4574550613 FASTQ NA 949887f9-0e80-4e58-a463-e2f4eca6f344 storage1 C3N-00665.RNA-Seq.R2.T C3N-00665 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cdd04b9-24fd-4cd0-adda-92fff85b4f2e/171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R2_001.fastq.gz 4836725837 FASTQ NA 3cdd04b9-24fd-4cd0-adda-92fff85b4f2e storage1 +C3N-00681.RNA-Seq.genomic.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55743065-aaf8-445c-9756-99d9edb0569c/30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.genomic.gdc_realn.bam 7909952623 BAM hg38 55743065-aaf8-445c-9756-99d9edb0569c storage1 C3N-00681.RNA-Seq.R1.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/182da2bf-ecc4-4df0-b857-d68da45b9a93/210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ NA 182da2bf-ecc4-4df0-b857-d68da45b9a93 storage1 C3N-00681.RNA-Seq.R2.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/670183c6-3c04-4e18-b129-3d104c270b33/210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ NA 670183c6-3c04-4e18-b129-3d104c270b33 storage1 +C3N-00681.WGS.Nbc.hg38 C3N-00681 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe2d050d-a92a-42e6-925c-669ac5a858c2/68519ab6-2a6e-4cb7-a3de-f648c394dc8d_wgs_gdc_realn.bam 151881801324 BAM hg38 fe2d050d-a92a-42e6-925c-669ac5a858c2 storage1 +C3N-00681.WGS.Tbm.hg38 C3N-00681 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/364841e8-4076-4d6b-be96-5a384877d20e/fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wgs_gdc_realn.bam 126787393204 BAM hg38 364841e8-4076-4d6b-be96-5a384877d20e storage1 C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f61a341-a3ba-4900-9e2a-4263c82bb97e/d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM hg38 6f61a341-a3ba-4900-9e2a-4263c82bb97e storage1 +C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/40986da5-0fd4-4bad-9204-b4639aa2db4d/d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM hg38 40986da5-0fd4-4bad-9204-b4639aa2db4d storage1 C3N-00682.RNA-Seq.R1.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e35d895-00c6-4c67-8a9a-5b05c85265d4/210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R1_001.fastq.gz 3637742988 FASTQ NA 1e35d895-00c6-4c67-8a9a-5b05c85265d4 storage1 C3N-00682.RNA-Seq.R2.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92ed38f9-f775-446c-805f-b4ebcd834900/210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R2_001.fastq.gz 3818796095 FASTQ NA 92ed38f9-f775-446c-805f-b4ebcd834900 storage1 +C3N-00682.WGS.Nbc.hg38 C3N-00682 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c144d70-5a22-494a-95d5-184d07361a2d/390d7f76-3d6f-46d1-8a88-402cb7923b53_wgs_gdc_realn.bam 165008409037 BAM hg38 5c144d70-5a22-494a-95d5-184d07361a2d storage1 +C3N-00682.WGS.Tbm.hg38 C3N-00682 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9f6a226-2277-4b18-8c66-49821f0b9fc6/cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wgs_gdc_realn.bam 156069378155 BAM hg38 a9f6a226-2277-4b18-8c66-49821f0b9fc6 storage1 +C3N-00682.WXS.Nbc.hg38 C3N-00682 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae1a9ec4-e7db-4467-bea4-d30d74abe706/390d7f76-3d6f-46d1-8a88-402cb7923b53_wxs_gdc_realn.bam 35173294973 BAM hg38 ae1a9ec4-e7db-4467-bea4-d30d74abe706 storage1 +C3N-00682.WXS.Tbm.hg38 C3N-00682 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35900896-b8ed-41d0-a4b8-7c4c08293966/cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wxs_gdc_realn.bam 28246981343 BAM hg38 35900896-b8ed-41d0-a4b8-7c4c08293966 storage1 +C3N-00689.RNA-Seq.genomic.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dbabb6e-0ee6-4c70-9778-64eef18053df/eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.genomic.gdc_realn.bam 7015130554 BAM hg38 5dbabb6e-0ee6-4c70-9778-64eef18053df storage1 C3N-00689.RNA-Seq.R1.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9fdc56b-5cdc-4b59-a7b3-037603f468e0/211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3452486555 FASTQ NA a9fdc56b-5cdc-4b59-a7b3-037603f468e0 storage1 C3N-00689.RNA-Seq.R2.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/739a1b27-ff73-43fe-aa21-b3005b66eb2a/211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 3683983306 FASTQ NA 739a1b27-ff73-43fe-aa21-b3005b66eb2a storage1 +C3N-00689.WGS.Nbc.hg38 C3N-00689 AML WGS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/878e413b-ef66-45a3-98c4-bc1c3dbf53cc/3e005f75-512b-468f-8f30-ca4283ae0e13_wgs_gdc_realn.bam 138205153404 BAM hg38 878e413b-ef66-45a3-98c4-bc1c3dbf53cc storage1 +C3N-00689.WGS.Tbm.hg38 C3N-00689 AML WGS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d67370bf-7944-4bb2-91a5-ada579ec1bdd/800a32d7-4f29-47af-8903-0cc0f3986c20_wgs_gdc_realn.bam 145848709846 BAM hg38 d67370bf-7944-4bb2-91a5-ada579ec1bdd storage1 +C3N-00689.WXS.Nbc.hg38 C3N-00689 AML WXS buccal_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04ff8cce-e24b-4214-b284-4556cd134563/3e005f75-512b-468f-8f30-ca4283ae0e13_wxs_gdc_realn.bam 41415472428 BAM hg38 04ff8cce-e24b-4214-b284-4556cd134563 storage1 +C3N-00689.WXS.Tbm.hg38 C3N-00689 AML WXS tumor_bone_marrow /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66fd07ec-bae8-440b-9f6d-5604342a87b2/800a32d7-4f29-47af-8903-0cc0f3986c20_wxs_gdc_realn.bam 32612454502 BAM hg38 66fd07ec-bae8-440b-9f6d-5604342a87b2 storage1 C3N-00704.RNA-Seq.R1.A C3N-00704 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84daa27c-2280-4bc2-b098-3ebe90dc4985/171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R1_001.fastq.gz 3868831519 FASTQ NA 84daa27c-2280-4bc2-b098-3ebe90dc4985 storage1 C3N-00704.RNA-Seq.R1.T C3N-00704 LUAD RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5373c83-5859-4af0-9cc8-d3362f26794b/170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R1_001.fastq.gz 3615965972 FASTQ NA a5373c83-5859-4af0-9cc8-d3362f26794b storage1 C3N-00704.RNA-Seq.R2.A C3N-00704 LUAD RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d8a3157-9d5b-4941-9d37-a4c2856b1bfd/171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R2_001.fastq.gz 3700937499 FASTQ NA 8d8a3157-9d5b-4941-9d37-a4c2856b1bfd storage1 @@ -4698,6 +5325,7 @@ C3N-01179.RNA-Seq.R2.A C3N-01179 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-01179.RNA-Seq.R2.T C3N-01179 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ac98ccb-09db-4275-b6d1-040d73f9f344/170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R2_001.fastq.gz 4664159822 FASTQ NA 4ac98ccb-09db-4275-b6d1-040d73f9f344 storage1 C3N-01180.RNA-Seq.R1.T C3N-01180 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d07af196-f7b8-42ef-b95a-4403e8ede3f3/170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R1_001.fastq.gz 3645122689 FASTQ NA d07af196-f7b8-42ef-b95a-4403e8ede3f3 storage1 C3N-01180.RNA-Seq.R2.T C3N-01180 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59baaed9-9a10-4bfe-9657-5ac24fdbd053/170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R2_001.fastq.gz 3897734313 FASTQ NA 59baaed9-9a10-4bfe-9657-5ac24fdbd053 storage1 +C3N-01191.RNA-Seq.genomic.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a2efa90-6c0f-488f-9866-843156c927d4/a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.genomic.gdc_realn.bam 9213919004 BAM hg38 9a2efa90-6c0f-488f-9866-843156c927d4 storage1 C3N-01191.RNA-Seq.R1.A C3N-01191 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4/210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ NA 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 storage1 C3N-01191.RNA-Seq.R1.A C3N-01191 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4/210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ NA 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 storage1 C3N-01191.RNA-Seq.R2.A C3N-01191 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ee179a1-f928-4601-b0a9-647dad31f4fd/210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R2_001.fastq.gz 4572187365 FASTQ NA 7ee179a1-f928-4601-b0a9-647dad31f4fd storage1 @@ -4714,6 +5342,7 @@ C3N-01194.RNA-Seq.R2.A C3N-01194 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-01194.RNA-Seq.R2.T C3N-01194 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe123d94-ffe4-4a32-8729-df53114e81b9/170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 4230230199 FASTQ NA fe123d94-ffe4-4a32-8729-df53114e81b9 storage1 C3N-01196.RNA-Seq.R1.T C3N-01196 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cf704de-fe0f-426b-8067-eece3a94120e/170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ NA 9cf704de-fe0f-426b-8067-eece3a94120e storage1 C3N-01196.RNA-Seq.R2.T C3N-01196 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0149b324-0f53-4425-aed2-1d785545cce6/170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ NA 0149b324-0f53-4425-aed2-1d785545cce6 storage1 +C3N-01197.RNA-Seq.genomic.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffe3453d-a051-4309-ad40-267a041fcc47/cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.genomic.gdc_realn.bam 7339367256 BAM hg38 ffe3453d-a051-4309-ad40-267a041fcc47 storage1 C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 C3N-01197.RNA-Seq.R1.A C3N-01197 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a6593dd-ae6a-4b75-8cb5-144ff91626b0/210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ NA 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 storage1 C3N-01197.RNA-Seq.R1.T C3N-01197 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75e83f5d-ad37-4018-ae11-bc247d76bf0a/170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3932675598 FASTQ NA 75e83f5d-ad37-4018-ae11-bc247d76bf0a storage1 @@ -4837,6 +5466,7 @@ C3N-01362.WGS.N.hg38 C3N-01362 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-01362.WGS.T.hg38 C3N-01362 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fed8e0d-1905-4605-a135-22e3c96ea76d/af3bad5c-867a-41a6-bafe-e1dce7ae4d61_wgs_gdc_realn.bam 110602045139 BAM hg38 9fed8e0d-1905-4605-a135-22e3c96ea76d storage1 C3N-01364.RNA-Seq.R1.T C3N-01364 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1a8bc5a-1fee-467d-bd74-2f300eaca110/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R1_001.fastq.gz 4080118644 FASTQ NA d1a8bc5a-1fee-467d-bd74-2f300eaca110 storage1 C3N-01364.RNA-Seq.R2.T C3N-01364 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d374973-7198-49c6-a491-e98ca9a8232c/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R2_001.fastq.gz 4324767117 FASTQ NA 8d374973-7198-49c6-a491-e98ca9a8232c storage1 +C3N-01365.RNA-Seq.genomic.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/406ad337-9579-4e48-aa51-17aa1802ab23/977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.genomic.gdc_realn.bam 10267863597 BAM hg38 406ad337-9579-4e48-aa51-17aa1802ab23 storage1 C3N-01365.RNA-Seq.R1.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9936d4a4-b553-40fc-9739-16e57a11ecee/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ NA 9936d4a4-b553-40fc-9739-16e57a11ecee storage1 C3N-01365.RNA-Seq.R1.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9936d4a4-b553-40fc-9739-16e57a11ecee/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ NA 9936d4a4-b553-40fc-9739-16e57a11ecee storage1 C3N-01365.RNA-Seq.R2.A C3N-01365 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10b7380d-90bc-47db-8580-ec64ccc6dea6/210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ NA 10b7380d-90bc-47db-8580-ec64ccc6dea6 storage1 @@ -5933,6 +6563,7 @@ C3N-02682.WXS.N.hg38 C3N-02682 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3N-02682.WXS.T.hg38 C3N-02682 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/307e94af-7463-4cec-a9e3-8f89ec1713a2/a96f6a16-6c6d-446b-8545-571072fd312a_wxs_gdc_realn.bam 41646001362 BAM hg38 307e94af-7463-4cec-a9e3-8f89ec1713a2 storage1 C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0263ae2-aa97-470b-9b51-bb94d28b6edc/63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM hg38 d0263ae2-aa97-470b-9b51-bb94d28b6edc storage1 C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69b5d037-e728-49dc-8fa6-ff955e5ace97/17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM hg38 69b5d037-e728-49dc-8fa6-ff955e5ace97 storage1 +C3N-02684.RNA-Seq.genomic.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd799b7e-354f-40ab-a95a-eb0e62225112/a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.genomic.gdc_realn.bam 8285546489 BAM hg38 cd799b7e-354f-40ab-a95a-eb0e62225112 storage1 C3N-02684.RNA-Seq.R1.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9d5ecfa-3887-4f7c-876b-e7addf0fa54d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ NA e9d5ecfa-3887-4f7c-876b-e7addf0fa54d storage1 C3N-02684.RNA-Seq.R1.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9d5ecfa-3887-4f7c-876b-e7addf0fa54d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ NA e9d5ecfa-3887-4f7c-876b-e7addf0fa54d storage1 C3N-02684.RNA-Seq.R2.A C3N-02684 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7513f50c-a395-49c5-8076-da5d97a21a2d/210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ NA 7513f50c-a395-49c5-8076-da5d97a21a2d storage1 @@ -6089,6 +6720,8 @@ C3N-02786.RNA-Seq.R1.T C3N-02786 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/ C3N-02786.RNA-Seq.R2.T C3N-02786 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fd2a712-9c61-4898-8ead-f530d7757699/180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R2_001.fastq.gz 4274543264 FASTQ NA 6fd2a712-9c61-4898-8ead-f530d7757699 storage1 C3N-02788.RNA-Seq.R1.T.RRNA_rkM095p C3N-02788 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7bf21101-629d-4259-9f38-bfe43c0d53fc/190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R1_001.fastq.gz 4684053431 FASTQ NA 7bf21101-629d-4259-9f38-bfe43c0d53fc storage1 C3N-02788.RNA-Seq.R2.T.RRNA_rkM095p C3N-02788 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9dca933-ce7f-4c10-baf2-71e0ac9d55b4/190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R2_001.fastq.gz 5280082406 FASTQ NA a9dca933-ce7f-4c10-baf2-71e0ac9d55b4 storage1 +C3N-02788.WXS.N.hg38 C3N-02788 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c488d878-1022-4929-890c-4b0615bcf063/784b8eee-0d64-4a0c-bb26-694e63127598_wxs_gdc_realn.bam 43614585993 BAM hg38 c488d878-1022-4929-890c-4b0615bcf063 storage1 +C3N-02788.WXS.T.RDNA_o26YyKX.hg38 C3N-02788 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4865666f-0144-4dc2-8d12-0ea2061e80e7/7abd92d0-2c6c-4fe7-a411-32349d22d560_wxs_gdc_realn.bam 33937652781 BAM hg38 4865666f-0144-4dc2-8d12-0ea2061e80e7 storage1 C3N-02789.RNA-Seq.R1.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4353b2fe-1b21-4707-b307-e3d8cadc9c4e/190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ NA 4353b2fe-1b21-4707-b307-e3d8cadc9c4e storage1 C3N-02789.RNA-Seq.R1.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59cad0cc-d9ea-42f5-b61a-2f69b4d8593d/20210729_P3_D7_WB7988-Plate3_S43_R1_001.fastq.gz 4681302026 FASTQ NA 59cad0cc-d9ea-42f5-b61a-2f69b4d8593d storage1 C3N-02789.RNA-Seq.R2.T C3N-02789 UCEC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/918aaf2f-e742-4f07-ae31-805fa1810d60/190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R2_001.fastq.gz 4376535516 FASTQ NA 918aaf2f-e742-4f07-ae31-805fa1810d60 storage1 @@ -6270,6 +6903,7 @@ C3N-03021.RNA-Seq.R2.A C3N-03021 CCRCC RNA-Seq tissue_normal /storage1/fs1/dingl C3N-03021.RNA-Seq.R2.T C3N-03021 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27aa231e-944d-41fb-9d71-18a2d029842a/190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ NA 27aa231e-944d-41fb-9d71-18a2d029842a storage1 C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4/e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM hg38 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 storage1 C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/325ed822-683e-457a-9687-2ade3fcd0bfe/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM hg38 325ed822-683e-457a-9687-2ade3fcd0bfe storage1 +C3N-03026.RNA-Seq.genomic.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6ecf701-e71d-422a-ad03-e1c1b6795206/104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.genomic.gdc_realn.bam 9699464204 BAM hg38 c6ecf701-e71d-422a-ad03-e1c1b6795206 storage1 C3N-03026.RNA-Seq.R1.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cf7ffc2-885e-4bc9-94fb-7d88e689ec88/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ NA 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 storage1 C3N-03026.RNA-Seq.R1.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cf7ffc2-885e-4bc9-94fb-7d88e689ec88/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ NA 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 storage1 C3N-03026.RNA-Seq.R2.A C3N-03026 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f826f72f-036c-4802-869d-9f33a5289ab1/210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R2_001.fastq.gz 4747391657 FASTQ NA f826f72f-036c-4802-869d-9f33a5289ab1 storage1 @@ -6470,6 +7104,7 @@ C3N-03441.RNA-Seq.R1.A C3N-03441 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-03441.RNA-Seq.R1.T C3N-03441 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1885822-bba2-4b9d-be2d-ff1092f16edf/190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 4845477485 FASTQ NA f1885822-bba2-4b9d-be2d-ff1092f16edf storage1 C3N-03441.RNA-Seq.R2.A C3N-03441 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be7e2f2d-13b5-4a91-b15b-4f9e3aeec7f6/190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R2_001.fastq.gz 4021739315 FASTQ NA be7e2f2d-13b5-4a91-b15b-4f9e3aeec7f6 storage1 C3N-03441.RNA-Seq.R2.T C3N-03441 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ade9763-0f5d-46d5-93bc-8dab152f682d/190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 5285164029 FASTQ NA 5ade9763-0f5d-46d5-93bc-8dab152f682d storage1 +C3N-03446.RNA-Seq.genomic.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fc41680-8893-44e4-9c54-4d3eda319053/f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.genomic.gdc_realn.bam 8685139216 BAM hg38 1fc41680-8893-44e4-9c54-4d3eda319053 storage1 C3N-03446.RNA-Seq.R1.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a9e30f7-2202-4950-a643-61f2b2a1579d/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ NA 5a9e30f7-2202-4950-a643-61f2b2a1579d storage1 C3N-03446.RNA-Seq.R1.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a9e30f7-2202-4950-a643-61f2b2a1579d/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ NA 5a9e30f7-2202-4950-a643-61f2b2a1579d storage1 C3N-03446.RNA-Seq.R2.A C3N-03446 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c66f195-9484-4900-9338-d02c9392ee59/210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ NA 2c66f195-9484-4900-9338-d02c9392ee59 storage1 @@ -6480,12 +7115,14 @@ C3N-03448.WXS.N.hg38 C3N-03448 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3N-03448.WXS.T.hg38 C3N-03448 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe33cf3-286e-4018-b4a5-0646edd91277/88b92c30-d2a1-4082-8f8a-74b0c810e12c_wxs_gdc_realn.bam 35505337871 BAM hg38 fbe33cf3-286e-4018-b4a5-0646edd91277 storage1 C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9cc9f57-6994-4632-99c3-b7b44deb2f42/42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM hg38 e9cc9f57-6994-4632-99c3-b7b44deb2f42 storage1 C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c86b4b-863d-404c-a883-76d1abac071c/95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM hg38 b2c86b4b-863d-404c-a883-76d1abac071c storage1 +C3N-03450.RNA-Seq.genomic.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3d499c6-ea9b-4b21-ac90-e9b702caef84/c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.genomic.gdc_realn.bam 8170300984 BAM hg38 d3d499c6-ea9b-4b21-ac90-e9b702caef84 storage1 C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81a63cde-b0d0-40d8-bd21-4ac99c45f504/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 storage1 C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81a63cde-b0d0-40d8-bd21-4ac99c45f504/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 storage1 C3N-03450.RNA-Seq.R2.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d26762d9-9ed0-4411-85a1-8a6ecfa904a0/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ NA d26762d9-9ed0-4411-85a1-8a6ecfa904a0 storage1 C3N-03450.RNA-Seq.R2.A C3N-03450 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d26762d9-9ed0-4411-85a1-8a6ecfa904a0/210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ NA d26762d9-9ed0-4411-85a1-8a6ecfa904a0 storage1 C3N-03450.WXS.A C3N-03450 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7498e01b-ef12-4dee-99a0-ab79f64e0119/CPT0405020008.WholeExome.RP-1303.bam 22154672056 BAM hg19 7498e01b-ef12-4dee-99a0-ab79f64e0119 storage1 C3N-03450.WXS.A.hg38 C3N-03450 GBM WXS tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fddeeebd-f11f-4532-bc45-1a948cac1499/ef8782dc-a720-4655-beda-b3b3e47c0772_wxs_gdc_realn.bam 30755140808 BAM hg38 fddeeebd-f11f-4532-bc45-1a948cac1499 storage1 +C3N-03452.RNA-Seq.genomic.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/110b1509-b14a-4783-abd1-c8da615a301b/5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.genomic.gdc_realn.bam 10990858822 BAM hg38 110b1509-b14a-4783-abd1-c8da615a301b storage1 C3N-03452.RNA-Seq.R1.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0556e930-1904-4780-bf80-cdfba5c577b7/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ NA 0556e930-1904-4780-bf80-cdfba5c577b7 storage1 C3N-03452.RNA-Seq.R1.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0556e930-1904-4780-bf80-cdfba5c577b7/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ NA 0556e930-1904-4780-bf80-cdfba5c577b7 storage1 C3N-03452.RNA-Seq.R2.A C3N-03452 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c582f341-273b-490f-9e51-725a98439835/210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ NA c582f341-273b-490f-9e51-725a98439835 storage1 @@ -6613,12 +7250,14 @@ C3N-03789.WXS.N.hg38 C3N-03789 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3N-03789.WXS.T.hg38 C3N-03789 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfa3caaf-f484-40f9-bd13-3708af6901c4/81c4a568-2fb2-44a1-b5cd-0654380d459a_wxs_gdc_realn.bam 25433729718 BAM hg38 cfa3caaf-f484-40f9-bd13-3708af6901c4 storage1 C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16b1732d-19aa-4414-a010-261a7c7295d1/2b68f934-9910-4dc6-adc3-1cf82764a7a0_wxs_gdc_realn.bam 44267823987 BAM hg38 16b1732d-19aa-4414-a010-261a7c7295d1 storage1 C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93a0f29b-98ed-46e0-8f8b-03e4b9e363db/a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM hg38 93a0f29b-98ed-46e0-8f8b-03e4b9e363db storage1 +C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d32ab761-f74c-4264-b248-f792d99173e5/1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.genomic.gdc_realn.bam 8634408522 BAM hg38 d32ab761-f74c-4264-b248-f792d99173e5 storage1 C3N-03792.RNA-Seq.R1.T C3N-03792 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc36ac00-dcf4-4714-9a22-e1b19e708b23/201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ NA dc36ac00-dcf4-4714-9a22-e1b19e708b23 storage1 C3N-03792.RNA-Seq.R2.T C3N-03792 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a7b201e1-89f6-4622-b6d8-a6271f6ab253/201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ NA a7b201e1-89f6-4622-b6d8-a6271f6ab253 storage1 C3N-03792.WGS.N.hg38 C3N-03792 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6/3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 82016915053 BAM hg38 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 storage1 C3N-03792.WGS.T.hg38 C3N-03792 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/589da87e-23f6-4ea0-a617-aca6a439932b/e3217e6c-3148-4949-9082-6a364c7f5166_wgs_gdc_realn.bam 70908445543 BAM hg38 589da87e-23f6-4ea0-a617-aca6a439932b storage1 C3N-03792.WXS.N.hg38 C3N-03792 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adfca261-c468-4f30-8049-2aaa440ba357/3d7cbf18-a043-454f-8905-cd5f885c8585_wxs_gdc_realn.bam 31161726626 BAM hg38 adfca261-c468-4f30-8049-2aaa440ba357 storage1 C3N-03792.WXS.T.hg38 C3N-03792 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dda791c-46ac-47fb-a77d-bd046ba2c254/e3217e6c-3148-4949-9082-6a364c7f5166_wxs_gdc_realn.bam 34687747029 BAM hg38 5dda791c-46ac-47fb-a77d-bd046ba2c254 storage1 +C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae9438f6-91dd-4097-b5b5-d042c7453049/16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.genomic.gdc_realn.bam 12060009459 BAM hg38 ae9438f6-91dd-4097-b5b5-d042c7453049 storage1 C3N-03796.RNA-Seq.R1.T C3N-03796 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b454290d-cc02-4dba-9054-63f52ec8be2c/201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ NA b454290d-cc02-4dba-9054-63f52ec8be2c storage1 C3N-03796.RNA-Seq.R2.T C3N-03796 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8e13d55-81ac-4ea7-bdf8-4113326e7051/201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ NA a8e13d55-81ac-4ea7-bdf8-4113326e7051 storage1 C3N-03796.WGS.N.hg38 C3N-03796 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44090d4f-41a1-4a1c-840a-f1c20832adde/108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 75789850346 BAM hg38 44090d4f-41a1-4a1c-840a-f1c20832adde storage1 @@ -6749,11 +7388,13 @@ C3N-04098.WXS.N.hg38 C3N-04098 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3N-04098.WXS.T.hg38 C3N-04098 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2002b1f2-6753-4744-aca7-282e72f76dfb/884a7198-709f-4946-9e7a-dea9055906df_wxs_gdc_realn.bam 31334787046 BAM hg38 2002b1f2-6753-4744-aca7-282e72f76dfb storage1 C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c20addd-92b7-436e-b8c7-0e202439e2eb/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM hg38 7c20addd-92b7-436e-b8c7-0e202439e2eb storage1 C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/645e357e-7bdf-4136-812c-e02db7f7fab0/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM hg38 645e357e-7bdf-4136-812c-e02db7f7fab0 storage1 +C3N-04113.RNA-Seq.genomic.T.RRNA_rk3EEVp.hg38 C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54eee2ab-eb37-42ac-9240-dd66f9914ee0/9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.genomic.gdc_realn.bam 8496679012 BAM hg38 54eee2ab-eb37-42ac-9240-dd66f9914ee0 storage1 C3N-04113.RNA-Seq.R1.T.RRNA_rk3EEVp C3N-04113 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69aa2a6b-6027-49f3-8e36-3103637b7cb1/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ NA 69aa2a6b-6027-49f3-8e36-3103637b7cb1 storage1 C3N-04113.RNA-Seq.R1.T.UNK_rk3EEVp C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69aa2a6b-6027-49f3-8e36-3103637b7cb1/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ NA 69aa2a6b-6027-49f3-8e36-3103637b7cb1 storage1 C3N-04113.RNA-Seq.R2.T.RRNA_rk3EEVp C3N-04113 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57e66976-7cfd-4dc7-960f-61b01cf53055/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ NA 57e66976-7cfd-4dc7-960f-61b01cf53055 storage1 C3N-04113.RNA-Seq.R2.T.UNK_rk3EEVp C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57e66976-7cfd-4dc7-960f-61b01cf53055/210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ NA 57e66976-7cfd-4dc7-960f-61b01cf53055 storage1 C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88491985-2778-4634-b8ed-32a17626ad72/CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM hg19 88491985-2778-4634-b8ed-32a17626ad72 storage1 +C3N-04113.WGS.N.hg38 C3N-04113 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a56868d-6456-4125-bd94-c89e0afdaeff/48f76814-e8a6-4689-ae08-37a3da4fbccf_wgs_gdc_realn.bam 91183903789 BAM hg38 8a56868d-6456-4125-bd94-c89e0afdaeff storage1 C3N-04113.WGS.T.RDNA_o25vvXX C3N-04113 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab315250-4cd5-431b-84e7-483d1db2b003/CPT0285640006.WholeGenome.RP-2158.bam 28355549625 BAM hg19 ab315250-4cd5-431b-84e7-483d1db2b003 storage1 C3N-04113.WGS.T.RDNA_o25vvXX.hg38 C3N-04113 GBM WGS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/316589c0-c980-491c-85cb-ed6085aa0239/1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wgs_gdc_realn.bam 84901748163 BAM hg38 316589c0-c980-491c-85cb-ed6085aa0239 storage1 C3N-04113.WXS.N C3N-04113 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f0c8c00e-1b52-496e-9eaf-09da2938df9b/CPT0285650002.WholeExome.RP-1303.bam 29786208134 BAM hg19 f0c8c00e-1b52-496e-9eaf-09da2938df9b storage1 @@ -6918,6 +7559,7 @@ C3N-04683.WXS.N.hg38 C3N-04683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3N-04683.WXS.T.hg38 C3N-04683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb548d65-f75d-43a2-8ff7-91f8654f2ea7/caea80b3-44ef-4e4b-a5a5-91889e0ca761_wxs_gdc_realn.bam 29106959762 BAM hg38 eb548d65-f75d-43a2-8ff7-91f8654f2ea7 storage1 C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8/04d7ff8e-1924-477d-a04b-5eaef2815a7d_wxs_gdc_realn.bam 36653203165 BAM hg38 f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8 storage1 C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/349a677b-4595-415c-b4ba-774a966c92c7/c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM hg38 349a677b-4595-415c-b4ba-774a966c92c7 storage1 +C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18d53c42-543f-40cd-a958-3d1a1437b8bc/a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.genomic.gdc_realn.bam 11869610513 BAM hg38 18d53c42-543f-40cd-a958-3d1a1437b8bc storage1 C3N-04687.RNA-Seq.R1.T C3N-04687 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5813883a-bd76-4717-b554-85107c414177/201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ NA 5813883a-bd76-4717-b554-85107c414177 storage1 C3N-04687.RNA-Seq.R2.T C3N-04687 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88fe2168-5fc0-4f42-87f2-19dceb47c4e3/201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ NA 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 storage1 C3N-04687.WGS.N.hg38 C3N-04687 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a12ebbd1-84fa-441b-8b7e-019cbde83059/89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 82172701135 BAM hg38 a12ebbd1-84fa-441b-8b7e-019cbde83059 storage1 @@ -6932,6 +7574,7 @@ C3N-04691.WXS.N.hg38 C3N-04691 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski C3N-04691.WXS.T.hg38 C3N-04691 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cfd40cf-be18-4ded-aafc-26e3705fb482/c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wxs_gdc_realn.bam 32312688782 BAM hg38 4cfd40cf-be18-4ded-aafc-26e3705fb482 storage1 C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fb6bf47-d501-4858-ba49-6e2cd516474a/b996ab8e-ae14-42ed-ac60-b74d932c0460_wxs_gdc_realn.bam 40597818463 BAM hg38 6fb6bf47-d501-4858-ba49-6e2cd516474a storage1 C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e/27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM hg38 e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e storage1 +C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98/747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.genomic.gdc_realn.bam 9691045980 BAM hg38 2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98 storage1 C3N-04695.RNA-Seq.R1.T C3N-04695 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/192aec81-2351-4e27-88b7-36549fbf6d8d/201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ NA 192aec81-2351-4e27-88b7-36549fbf6d8d storage1 C3N-04695.RNA-Seq.R2.T C3N-04695 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37a18500-3aa6-42ad-99ed-e1c041194c48/201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ NA 37a18500-3aa6-42ad-99ed-e1c041194c48 storage1 C3N-04695.WGS.N.hg38 C3N-04695 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fab7e8e1-714b-4798-9ef7-1612394e55d5/dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 66383764365 BAM hg38 fab7e8e1-714b-4798-9ef7-1612394e55d5 storage1 @@ -6958,6 +7601,7 @@ C3N-04982.RNA-Seq.R1.A C3N-04982 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-04982.RNA-Seq.R1.T C3N-04982 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ca5fa21-48e5-4126-a630-8d5d067831e7/201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ NA 8ca5fa21-48e5-4126-a630-8d5d067831e7 storage1 C3N-04982.RNA-Seq.R2.A C3N-04982 LSCC RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b338fa6-70b4-4384-a81e-302d3d66da03/201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ NA 9b338fa6-70b4-4384-a81e-302d3d66da03 storage1 C3N-04982.RNA-Seq.R2.T C3N-04982 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ad5ffec-1888-46b6-9b5c-c9b84c406aa9/201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ NA 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 storage1 +C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cee0c9b9-adef-4af8-8563-e1729eb1b26e/8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.genomic.gdc_realn.bam 8268764824 BAM hg38 cee0c9b9-adef-4af8-8563-e1729eb1b26e storage1 C3N-05039.RNA-Seq.R1.T C3N-05039 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ab25656-a131-45dd-8109-b25ff504557b/201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ NA 6ab25656-a131-45dd-8109-b25ff504557b storage1 C3N-05039.RNA-Seq.R2.T C3N-05039 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65389fb7-97ce-4735-bc64-6092b9173a2a/201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ NA 65389fb7-97ce-4735-bc64-6092b9173a2a storage1 C3N-05039.WGS.N.hg38 C3N-05039 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05fa37fb-0df8-498f-8f7f-14f9a735c215/e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 69461606241 BAM hg38 05fa37fb-0df8-498f-8f7f-14f9a735c215 storage1 @@ -6996,12 +7640,14 @@ C3N-05100.RNA-Seq.R1.T C3N-05100 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active C3N-05100.RNA-Seq.R2.T C3N-05100 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c5daa7-707a-4c87-bf16-6b740134c2d1/200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R2_001.fastq.gz 4036803940 FASTQ NA b2c5daa7-707a-4c87-bf16-6b740134c2d1 storage1 C3N-05100.WGS.N.hg38 C3N-05100 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f/39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wgs_gdc_realn.bam 62286351996 BAM hg38 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f storage1 C3N-05100.WGS.T.hg38 C3N-05100 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e32667cf-b7d8-4ec2-a63a-17497134fd97/5ef62f88-5293-4a68-a523-50eacbd2dc9b_wgs_gdc_realn.bam 57763506632 BAM hg38 e32667cf-b7d8-4ec2-a63a-17497134fd97 storage1 +C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c395db0-995b-4a65-93f0-026b54b12aaa/b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.genomic.gdc_realn.bam 7585267874 BAM hg38 1c395db0-995b-4a65-93f0-026b54b12aaa storage1 C3N-05114.RNA-Seq.R1.T C3N-05114 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a01510e-f773-49bb-b942-ed13ac1e72a2/201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ NA 0a01510e-f773-49bb-b942-ed13ac1e72a2 storage1 C3N-05114.RNA-Seq.R2.T C3N-05114 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23d53980-2023-4c74-bb48-ff2282011226/201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ NA 23d53980-2023-4c74-bb48-ff2282011226 storage1 C3N-05114.WGS.N.hg38 C3N-05114 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae/e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 69989761070 BAM hg38 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae storage1 C3N-05114.WGS.T.hg38 C3N-05114 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6/5169afe8-1fb1-459b-b5b6-f28129bc1de1_wgs_gdc_realn.bam 92653420444 BAM hg38 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 storage1 C3N-05114.WXS.N.hg38 C3N-05114 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec6ae616-4341-4d27-8a50-698388968128/e8446ae9-fcf6-48e3-8073-0b0ba6396588_wxs_gdc_realn.bam 34460031755 BAM hg38 ec6ae616-4341-4d27-8a50-698388968128 storage1 C3N-05114.WXS.T.hg38 C3N-05114 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bede02c2-63fa-4694-bf71-778ceb6bf864/5169afe8-1fb1-459b-b5b6-f28129bc1de1_wxs_gdc_realn.bam 29470990817 BAM hg38 bede02c2-63fa-4694-bf71-778ceb6bf864 storage1 +C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca7e72d4-c212-400f-b47d-735fd40e4dce/4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.genomic.gdc_realn.bam 7837920975 BAM hg38 ca7e72d4-c212-400f-b47d-735fd40e4dce storage1 C3N-05135.RNA-Seq.R1.T C3N-05135 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f923cf94-4f61-4f33-8cab-5328f7853280/201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ NA f923cf94-4f61-4f33-8cab-5328f7853280 storage1 C3N-05135.RNA-Seq.R2.T C3N-05135 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bba10325-9b48-47e2-8983-b3687f010e06/201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ NA bba10325-9b48-47e2-8983-b3687f010e06 storage1 C3N-05135.WGS.N.hg38 C3N-05135 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dc48332-6ed2-417b-958f-c1595135fa9e/d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 68301546626 BAM hg38 5dc48332-6ed2-417b-958f-c1595135fa9e storage1 @@ -7044,6 +7690,7 @@ C3N-05929.RNA-Seq.R2.A C3N-05929 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla C3N-05929.RNA-Seq.R2.T C3N-05929 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/200ade6e-45a6-4b14-b570-23c1adc6d051/200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R2_001.fastq.gz 3893882529 FASTQ NA 200ade6e-45a6-4b14-b570-23c1adc6d051 storage1 C3N-05929.WGS.N.hg38 C3N-05929 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/823dda5b-ff15-4a66-b28b-de0632850623/e3bf416b-3d08-4d1b-bec4-808e55c7788c_wgs_gdc_realn.bam 67323248287 BAM hg38 823dda5b-ff15-4a66-b28b-de0632850623 storage1 C3N-05929.WGS.T.hg38 C3N-05929 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5d518a3-fc69-4d7b-a719-0aad38abe43a/23fa88f9-9293-406b-bc21-2928ff12bc8b_wgs_gdc_realn.bam 68602850602 BAM hg38 c5d518a3-fc69-4d7b-a719-0aad38abe43a storage1 +C3N-05991.RNA-Seq.genomic.T.hg38 C3N-05991 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5584991c-ac0e-4df5-add0-4f2303223862/30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.genomic.gdc_realn.bam 7699962451 BAM hg38 5584991c-ac0e-4df5-add0-4f2303223862 storage1 C3N-05991.RNA-Seq.R1.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3fdfc5e-7311-4d86-ac76-83d954c22674/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ NA f3fdfc5e-7311-4d86-ac76-83d954c22674 storage1 C3N-05991.RNA-Seq.R1.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3fdfc5e-7311-4d86-ac76-83d954c22674/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ NA f3fdfc5e-7311-4d86-ac76-83d954c22674 storage1 C3N-05991.RNA-Seq.R2.T C3N-05991 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f4a08f1-2571-471f-9eac-c774275f33f4/201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ NA 8f4a08f1-2571-471f-9eac-c774275f33f4 storage1 @@ -7052,6 +7699,7 @@ C3N-05991.WGS.N.hg38 C3N-05991 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-05991.WGS.T.hg38 C3N-05991 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/050d8938-f282-41da-94a0-94fefe053d4e/0ca72fda-2cdf-415a-b5a4-53470bf3af60_wgs_gdc_realn.bam 93840833290 BAM hg38 050d8938-f282-41da-94a0-94fefe053d4e storage1 C3N-05991.WXS.N.hg38 C3N-05991 GBM WXS blood_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0650ae98-e90e-4ce8-a835-703349dc966e/099752ff-7fa5-4eb0-831a-09e5a211d5c3_wxs_gdc_realn.bam 43082793097 BAM hg38 0650ae98-e90e-4ce8-a835-703349dc966e storage1 C3N-05991.WXS.T.hg38 C3N-05991 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c48aae6-c19b-46e4-a8aa-205117088f07/0ca72fda-2cdf-415a-b5a4-53470bf3af60_wxs_gdc_realn.bam 28678600810 BAM hg38 7c48aae6-c19b-46e4-a8aa-205117088f07 storage1 +C464694.RNA-Seq.genomic.T.hg38 C464694 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd31d639-0b9c-406d-9849-bfef9baefc0a/7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.genomic.gdc_realn.bam 9062562582 BAM hg38 cd31d639-0b9c-406d-9849-bfef9baefc0a storage1 C464694.RNA-Seq.R1.T C464694 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e953a951-3a91-442e-ad44-8ebde2357ba1/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ NA e953a951-3a91-442e-ad44-8ebde2357ba1 storage1 C464694.RNA-Seq.R1.T C464694 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e953a951-3a91-442e-ad44-8ebde2357ba1/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ NA e953a951-3a91-442e-ad44-8ebde2357ba1 storage1 C464694.RNA-Seq.R2.T C464694 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfd4d083-3696-4f1a-9a7b-9613cb26d82d/210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ NA dfd4d083-3696-4f1a-9a7b-9613cb26d82d storage1 @@ -7070,6 +7718,8 @@ C464694.WXS.T.ADNA_7319b796 C464694 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C464694.WXS.T.ADNA_7319b796.hg38 C464694 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00eb9000-e8b4-4b57-8f08-45b92aaba916/737a37b7-31a5-4187-a4fa-5e7171bb6569_wxs_gdc_realn.bam 31018496566 BAM hg38 00eb9000-e8b4-4b57-8f08-45b92aaba916 storage1 C464694.WXS.T C464694 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/680f0ed2-f4b3-4831-afb6-1758fa985db4/7316UP-1220-1105271.WholeExome.RP-1303.bam 23752991278 BAM hg19 680f0ed2-f4b3-4831-afb6-1758fa985db4 storage1 C464694.WXS.T.hg38 C464694 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44dd95c6-0058-43cc-8f40-781d00ea6f46/31b51dd4-c4fe-4d97-ae09-698217519667_wxs_gdc_realn.bam 32446858344 BAM hg38 44dd95c6-0058-43cc-8f40-781d00ea6f46 storage1 +C524103.RNA-Seq.genomic.R.hg38 C524103 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86de2fe4-4f4c-473a-9b3c-3ad8304105a2/fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.genomic.gdc_realn.bam 6665188457 BAM hg38 86de2fe4-4f4c-473a-9b3c-3ad8304105a2 storage1 +C524103.RNA-Seq.genomic.T.hg38 C524103 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b563f90b-b773-4b13-b4cf-a219780019ac/6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.genomic.gdc_realn.bam 9347625606 BAM hg38 b563f90b-b773-4b13-b4cf-a219780019ac storage1 C524103.RNA-Seq.R1.R C524103 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22a329b1-e16e-4f74-9776-f89111085a6e/210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ NA 22a329b1-e16e-4f74-9776-f89111085a6e storage1 C524103.RNA-Seq.R1.R C524103 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22a329b1-e16e-4f74-9776-f89111085a6e/210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ NA 22a329b1-e16e-4f74-9776-f89111085a6e storage1 C524103.RNA-Seq.R1.T C524103 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afe00443-10de-4f18-b3cc-feda64a0ed5b/210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R1_001.fastq.gz 3191813062 FASTQ NA afe00443-10de-4f18-b3cc-feda64a0ed5b storage1 @@ -7096,6 +7746,7 @@ C524103.WXS.T.ADNA_aee3de0f C524103 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C524103.WXS.T.ADNA_aee3de0f.hg38 C524103 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35d02b21-b274-4b7c-ac81-9f4a5dd1176d/4c95a675-d17a-40a7-b77f-a2389895f7fe_wxs_gdc_realn.bam 35777446418 BAM hg38 35d02b21-b274-4b7c-ac81-9f4a5dd1176d storage1 C524103.WXS.T C524103 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd8edce2-d841-4514-8c43-806379e3926f/7316UP-1302-1105204.WholeExome.RP-1303.bam 24692723272 BAM hg19 cd8edce2-d841-4514-8c43-806379e3926f storage1 C524103.WXS.T.hg38 C524103 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b0b81ce-7556-4be8-bf5f-6f359239cc39/ffd6163a-085f-4213-89e4-5bbc68bca404_wxs_gdc_realn.bam 33667946602 BAM hg38 2b0b81ce-7556-4be8-bf5f-6f359239cc39 storage1 +C621273.RNA-Seq.genomic.R.hg38 C621273 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e634914-b72e-4e9c-ad83-1f7894b8bfa4/d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.genomic.gdc_realn.bam 7690057852 BAM hg38 5e634914-b72e-4e9c-ad83-1f7894b8bfa4 storage1 C621273.RNA-Seq.R1.R C621273 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2076f19-ae18-4b0f-90c0-009d307bac68/210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ NA d2076f19-ae18-4b0f-90c0-009d307bac68 storage1 C621273.RNA-Seq.R1.R C621273 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2076f19-ae18-4b0f-90c0-009d307bac68/210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ NA d2076f19-ae18-4b0f-90c0-009d307bac68 storage1 C621273.RNA-Seq.R2.R C621273 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/208f978b-38ac-480f-ba8b-10672e7acf9d/210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R2_001.fastq.gz 3751660538 FASTQ NA 208f978b-38ac-480f-ba8b-10672e7acf9d storage1 @@ -7112,6 +7763,8 @@ C621273.WXS.R C621273 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Activ C621273.WXS.R.hg38 C621273 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b9fddc3-220e-4e53-ad75-a91acf6a54b8/4d9473f9-d9c4-4760-9eb4-4d1d2fad1300_wxs_gdc_realn.bam 34314709584 BAM hg38 5b9fddc3-220e-4e53-ad75-a91acf6a54b8 storage1 C621273.WXS.T C621273 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38c4cb2f-7d97-42b1-b7e5-7623a5c63d4c/7316UP-1405.WholeExome.RP-1303.bam 32756236316 BAM hg19 38c4cb2f-7d97-42b1-b7e5-7623a5c63d4c storage1 C621273.WXS.T.hg38 C621273 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4daf5e7f-6a2a-4c49-a2cb-abb712bacfae/3f83ce79-0cd9-4e7e-9352-726042aff7c8_wxs_gdc_realn.bam 44359010942 BAM hg38 4daf5e7f-6a2a-4c49-a2cb-abb712bacfae storage1 +C685110.RNA-Seq.genomic.R.hg38 C685110 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14d4bd12-48b5-4981-8c3d-9119a9a216c7/876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.genomic.gdc_realn.bam 9672838007 BAM hg38 14d4bd12-48b5-4981-8c3d-9119a9a216c7 storage1 +C685110.RNA-Seq.genomic.T.hg38 C685110 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2de6ee3b-51f5-4670-8a32-c6e5242c61ad/e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.genomic.gdc_realn.bam 8861269527 BAM hg38 2de6ee3b-51f5-4670-8a32-c6e5242c61ad storage1 C685110.RNA-Seq.R1.R C685110 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ff23a92-6ade-4e6b-9867-2c64eb28c3de/210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ NA 0ff23a92-6ade-4e6b-9867-2c64eb28c3de storage1 C685110.RNA-Seq.R1.R C685110 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ff23a92-6ade-4e6b-9867-2c64eb28c3de/210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ NA 0ff23a92-6ade-4e6b-9867-2c64eb28c3de storage1 C685110.RNA-Seq.R1.T C685110 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/519a2bd8-5dba-4d6a-9ca0-3cc6855d0045/210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R1_001.fastq.gz 4410505069 FASTQ NA 519a2bd8-5dba-4d6a-9ca0-3cc6855d0045 storage1 @@ -7136,6 +7789,8 @@ C685110.WXS.T.ADNA_224ab8cc C685110 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C685110.WXS.T.ADNA_224ab8cc.hg38 C685110 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0da7ee04-c471-488a-900b-44c538d9b274/9cd89b80-7f2d-4caf-9599-4457c80de4cd_wxs_gdc_realn.bam 42219310210 BAM hg38 0da7ee04-c471-488a-900b-44c538d9b274 storage1 C685110.WXS.T C685110 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d0a809c-159d-4108-bd85-d202c3174aa9/7316UP-1640-1105266.WholeExome.RP-1303.bam 24916908755 BAM hg19 9d0a809c-159d-4108-bd85-d202c3174aa9 storage1 C685110.WXS.T.hg38 C685110 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/533ec6cf-ac77-4d87-ad54-c8f34025c447/1e2e1134-2810-4845-91cb-feed8c0cb7af_wxs_gdc_realn.bam 34019804973 BAM hg38 533ec6cf-ac77-4d87-ad54-c8f34025c447 storage1 +C760878.RNA-Seq.genomic.R.hg38 C760878 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28620a9c-d98c-49c7-86e3-c1219b7851ba/ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.genomic.gdc_realn.bam 7958016593 BAM hg38 28620a9c-d98c-49c7-86e3-c1219b7851ba storage1 +C760878.RNA-Seq.genomic.T.hg38 C760878 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a62d98d-5e1a-4bc5-81df-3e4ab96ca6e6/2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.genomic.gdc_realn.bam 7122744863 BAM hg38 7a62d98d-5e1a-4bc5-81df-3e4ab96ca6e6 storage1 C760878.RNA-Seq.R1.R C760878 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c47b1200-7652-4875-9681-8bdcd0de7ac0/210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ NA c47b1200-7652-4875-9681-8bdcd0de7ac0 storage1 C760878.RNA-Seq.R1.R C760878 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c47b1200-7652-4875-9681-8bdcd0de7ac0/210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ NA c47b1200-7652-4875-9681-8bdcd0de7ac0 storage1 C760878.RNA-Seq.R1.T C760878 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86b299c6-96ce-4d99-b32b-76a4bcd9ee4c/210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3428466031 FASTQ NA 86b299c6-96ce-4d99-b32b-76a4bcd9ee4c storage1 @@ -7162,6 +7817,8 @@ C760878.WXS.T.ADNA_b1ddc47c C760878 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C760878.WXS.T.ADNA_b1ddc47c.hg38 C760878 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dae070e2-2c6a-49ba-ae92-6f2319325e2a/9efda7a7-d54a-492b-9158-88f2644e909f_wxs_gdc_realn.bam 36863375757 BAM hg38 dae070e2-2c6a-49ba-ae92-6f2319325e2a storage1 C760878.WXS.T C760878 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae2999a1-41b5-4226-b4c7-47045e937235/7316UP-1843-1105254.WholeExome.RP-1303.bam 24231661236 BAM hg19 ae2999a1-41b5-4226-b4c7-47045e937235 storage1 C760878.WXS.T.hg38 C760878 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5495a6ee-951b-4613-b9d3-3344fe76a916/ad3ce926-8ffc-46c4-87c9-64fba596ac12_wxs_gdc_realn.bam 34062192234 BAM hg38 5495a6ee-951b-4613-b9d3-3344fe76a916 storage1 +C761370.RNA-Seq.genomic.R.hg38 C761370 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dcdcbe6-7208-4d07-b5c1-ef5fa8dda187/a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.genomic.gdc_realn.bam 9445323463 BAM hg38 6dcdcbe6-7208-4d07-b5c1-ef5fa8dda187 storage1 +C761370.RNA-Seq.genomic.T.hg38 C761370 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/151c4db5-7e2f-449f-b91d-1086a6ace6a5/7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.genomic.gdc_realn.bam 9319554993 BAM hg38 151c4db5-7e2f-449f-b91d-1086a6ace6a5 storage1 C761370.RNA-Seq.R1.R C761370 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5888865b-8b1c-409f-849d-a969b1c7d9f1/210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ NA 5888865b-8b1c-409f-849d-a969b1c7d9f1 storage1 C761370.RNA-Seq.R1.R C761370 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5888865b-8b1c-409f-849d-a969b1c7d9f1/210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ NA 5888865b-8b1c-409f-849d-a969b1c7d9f1 storage1 C761370.RNA-Seq.R1.T C761370 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dca91fcb-3f8f-44de-965d-65e921a02fd5/210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R1_001.fastq.gz 3676602157 FASTQ NA dca91fcb-3f8f-44de-965d-65e921a02fd5 storage1 @@ -7192,6 +7849,7 @@ C761370.WXS.T.ADNA_260f1df4 C761370 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C761370.WXS.T.ADNA_260f1df4.hg38 C761370 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd66e1f9-ce3b-4a76-9e48-23bf78568f41/59ba09c2-abf4-46dd-b566-c703d8da80e5_wxs_gdc_realn.bam 44821987147 BAM hg38 fd66e1f9-ce3b-4a76-9e48-23bf78568f41 storage1 C761370.WXS.T C761370 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/910901e4-d63f-41b2-b866-a602bc9a17d5/7316UP-1848-1105252.WholeExome.RP-1303.bam 25751689208 BAM hg19 910901e4-d63f-41b2-b866-a602bc9a17d5 storage1 C761370.WXS.T.hg38 C761370 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8541768d-a439-4abf-987e-d08039a4ec1d/94dc4f39-5f41-450e-bc88-b5efb574ab4b_wxs_gdc_realn.bam 34824648092 BAM hg38 8541768d-a439-4abf-987e-d08039a4ec1d storage1 +C827913.RNA-Seq.genomic.R.ARNA_97c68cdd.hg38 C827913 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd9ede12-b516-4d3a-abec-5c7781905508/1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.genomic.gdc_realn.bam 10532417541 BAM hg38 bd9ede12-b516-4d3a-abec-5c7781905508 storage1 C827913.RNA-Seq.R1.R.ARNA_97c68cdd C827913 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d9d1934-c881-4f7f-868e-7ff2720591ce/210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ NA 7d9d1934-c881-4f7f-868e-7ff2720591ce storage1 C827913.RNA-Seq.R1.R.ARNA_97c68cdd C827913 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d9d1934-c881-4f7f-868e-7ff2720591ce/210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ NA 7d9d1934-c881-4f7f-868e-7ff2720591ce storage1 C827913.RNA-Seq.R2.R.ARNA_97c68cdd C827913 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81cfe120-ec7e-48d7-8468-c407c8fef01e/210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R2_001.fastq.gz 4505545231 FASTQ NA 81cfe120-ec7e-48d7-8468-c407c8fef01e storage1 @@ -7214,6 +7872,8 @@ C827913.WXS.R C827913 GBM WXS recurrent_tumor /storage1/fs1/m.wyczalkowski/Activ C827913.WXS.R.hg38 C827913 GBM WXS recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b5e4d0b-4639-4fc2-8fdc-4c72efdd3b52/8454ea62-6eaf-4365-9615-865f92181d00_wxs_gdc_realn.bam 32879863913 BAM hg38 5b5e4d0b-4639-4fc2-8fdc-4c72efdd3b52 storage1 C827913.WXS.T C827913 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25e176fc-33df-4190-85fd-515ccfde7a96/7316UP-2058.WholeExome.RP-1303.bam 23498711738 BAM hg19 25e176fc-33df-4190-85fd-515ccfde7a96 storage1 C827913.WXS.T.hg38 C827913 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/295d757c-a37e-49f5-9d26-65dff2dbbf13/04ca4248-176f-4eda-89af-30230af7817d_wxs_gdc_realn.bam 31571237792 BAM hg38 295d757c-a37e-49f5-9d26-65dff2dbbf13 storage1 +C846363.RNA-Seq.genomic.R.hg38 C846363 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca8264d0-25c2-409e-b8ea-59f81acace26/3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.genomic.gdc_realn.bam 8713657595 BAM hg38 ca8264d0-25c2-409e-b8ea-59f81acace26 storage1 +C846363.RNA-Seq.genomic.T.hg38 C846363 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36b7e9af-4115-4929-84b9-4a1fc44144bf/d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.genomic.gdc_realn.bam 7913953929 BAM hg38 36b7e9af-4115-4929-84b9-4a1fc44144bf storage1 C846363.RNA-Seq.R1.R C846363 GBM RNA-Seq recurrent_tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed500025-1eaf-4dde-8174-8803c579bb73/210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ NA ed500025-1eaf-4dde-8174-8803c579bb73 storage1 C846363.RNA-Seq.R1.R C846363 GBM RNA-Seq recurrent_tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed500025-1eaf-4dde-8174-8803c579bb73/210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ NA ed500025-1eaf-4dde-8174-8803c579bb73 storage1 C846363.RNA-Seq.R1.T C846363 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05606bfc-9000-4aa7-a4d1-694fc9ad6410/210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R1_001.fastq.gz 3798490040 FASTQ NA 05606bfc-9000-4aa7-a4d1-694fc9ad6410 storage1 @@ -7240,23 +7900,33 @@ C846363.WXS.T.ADNA_51dcc4a3 C846363 GBM WXS tumor /storage1/fs1/m.wyczalkowski/A C846363.WXS.T.ADNA_51dcc4a3.hg38 C846363 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83a989e8-836e-42b2-a240-f87f0858d189/9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wxs_gdc_realn.bam 47361689745 BAM hg38 83a989e8-836e-42b2-a240-f87f0858d189 storage1 C846363.WXS.T C846363 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57b43f3a-59cf-4057-9240-5c0965ff2f09/7316UP-2100-1105219.WholeExome.RP-1303.bam 15815239997 BAM hg19 57b43f3a-59cf-4057-9240-5c0965ff2f09 storage1 C846363.WXS.T.hg38 C846363 GBM WXS tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3e1eeb8-e749-4520-83e2-3ae1091a7207/d895aa40-8999-4f0b-be15-694f1bdb380c_wxs_gdc_realn.bam 22124861490 BAM hg38 e3e1eeb8-e749-4520-83e2-3ae1091a7207 storage1 +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.genomic.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cabfadbd-5245-4403-8315-10e6982d9c8e/7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.genomic.gdc_realn.bam 8042385019 BAM hg38 cabfadbd-5245-4403-8315-10e6982d9c8e storage1 GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R1.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc06c745-5e1d-4360-98b5-5932622e5ad6/190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R1_001.fastq.gz 3765743130 FASTQ NA bc06c745-5e1d-4360-98b5-5932622e5ad6 storage1 GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R2.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c2c947c-f8b3-4cf4-aa09-c4a484c21efc/190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R2_001.fastq.gz 4079829284 FASTQ NA 0c2c947c-f8b3-4cf4-aa09-c4a484c21efc storage1 +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.genomic.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aade6614-661a-4070-87ef-938205656ddb/5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.genomic.gdc_realn.bam 7999492501 BAM hg38 aade6614-661a-4070-87ef-938205656ddb storage1 GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R1.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eaee871f-6c1c-4b68-ae45-c02b26e03112/190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R1_001.fastq.gz 3585455144 FASTQ NA eaee871f-6c1c-4b68-ae45-c02b26e03112 storage1 GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R2.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac5d5942-5109-443b-a92f-a2cc70ea4764/190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R2_001.fastq.gz 3823964368 FASTQ NA ac5d5942-5109-443b-a92f-a2cc70ea4764 storage1 +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.genomic.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03bd5ecf-022b-46b9-bf66-e39566aa5944/f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.genomic.gdc_realn.bam 7209390016 BAM hg38 03bd5ecf-022b-46b9-bf66-e39566aa5944 storage1 GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R1.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c47d5e3-b037-4bc6-80c2-eba31eeb58e0/190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R1_001.fastq.gz 3415853912 FASTQ NA 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 storage1 GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R2.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/222a2d66-7b96-4170-bf35-7b9c23d8953f/190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R2_001.fastq.gz 3709398511 FASTQ NA 222a2d66-7b96-4170-bf35-7b9c23d8953f storage1 +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.genomic.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45c87aac-c1fa-4852-b50b-e9159328c34d/dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.genomic.gdc_realn.bam 9804688719 BAM hg38 45c87aac-c1fa-4852-b50b-e9159328c34d storage1 GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R1.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebbf052b-938b-4978-87bb-e203ecd9ea8d/190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R1_001.fastq.gz 4465868783 FASTQ NA ebbf052b-938b-4978-87bb-e203ecd9ea8d storage1 GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R2.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5493009c-4e84-42d1-845e-f597e8538bdf/190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R2_001.fastq.gz 4376071746 FASTQ NA 5493009c-4e84-42d1-845e-f597e8538bdf storage1 +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.genomic.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c625917-2193-428f-b5fe-55ed7673ed57/3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.genomic.gdc_realn.bam 11745035991 BAM hg38 3c625917-2193-428f-b5fe-55ed7673ed57 storage1 GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R1.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae85444e-59ad-43b5-bab7-4c138b7291af/190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R1_001.fastq.gz 5085066252 FASTQ NA ae85444e-59ad-43b5-bab7-4c138b7291af storage1 GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R2.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41592dab-9730-40dc-8c7a-1c164445e2fc/190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R2_001.fastq.gz 5392721495 FASTQ NA 41592dab-9730-40dc-8c7a-1c164445e2fc storage1 +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.genomic.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52ac11b4-a30d-41af-a451-98d8fb381068/62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.genomic.gdc_realn.bam 9466463129 BAM hg38 52ac11b4-a30d-41af-a451-98d8fb381068 storage1 GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R1.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/991c731a-f70e-46c6-82f8-fe5b1c4f2014/190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R1_001.fastq.gz 4343747954 FASTQ NA 991c731a-f70e-46c6-82f8-fe5b1c4f2014 storage1 GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R2.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/169530bc-e43c-40b8-938d-55fc0c5afbb2/190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R2_001.fastq.gz 4681867735 FASTQ NA 169530bc-e43c-40b8-938d-55fc0c5afbb2 storage1 +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.genomic.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8688d61-cba6-44a2-a06e-9213e8ab7775/0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.genomic.gdc_realn.bam 6966540778 BAM hg38 d8688d61-cba6-44a2-a06e-9213e8ab7775 storage1 GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R1.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/440b3a6f-55b1-4a6e-b60f-875dff4a1648/190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R1_001.fastq.gz 3264885576 FASTQ NA 440b3a6f-55b1-4a6e-b60f-875dff4a1648 storage1 GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R2.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f64b4605-5731-4f25-b62a-c0bb5e52402e/190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R2_001.fastq.gz 3488807105 FASTQ NA f64b4605-5731-4f25-b62a-c0bb5e52402e storage1 +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.genomic.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7eb17d7f-4774-4f4d-ab20-29f6b93aff6e/dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.genomic.gdc_realn.bam 8913744384 BAM hg38 7eb17d7f-4774-4f4d-ab20-29f6b93aff6e storage1 GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R1.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cdf168a3-2eb6-4368-bf54-f23950626b10/190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R1_001.fastq.gz 4306549496 FASTQ NA cdf168a3-2eb6-4368-bf54-f23950626b10 storage1 GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R2.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aec464aa-f28d-407d-a76f-869a3121d472/190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R2_001.fastq.gz 4425085797 FASTQ NA aec464aa-f28d-407d-a76f-869a3121d472 storage1 +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.genomic.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/245574d1-0a50-4757-918d-e7bb7975c8db/382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.genomic.gdc_realn.bam 10268900215 BAM hg38 245574d1-0a50-4757-918d-e7bb7975c8db storage1 GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R1.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/682b4036-c822-40d0-9662-2c18077f8493/190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R1_001.fastq.gz 4854888143 FASTQ NA 682b4036-c822-40d0-9662-2c18077f8493 storage1 GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R2.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43e9394a-420b-4a99-907a-2f0a293a9f1c/190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R2_001.fastq.gz 5090597822 FASTQ NA 43e9394a-420b-4a99-907a-2f0a293a9f1c storage1 +PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bee133f1-204b-43e5-a0a4-cc48750a983a/5a345e23-495c-4556-a169-426655ad39df.rna_seq.genomic.gdc_realn.bam 13387407531 BAM hg38 bee133f1-204b-43e5-a0a4-cc48750a983a storage1 PT-Q2AG.RNA-Seq.R1.A PT-Q2AG GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/624298d8-62b5-48e2-8dbb-114aa81b99b3/201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ NA 624298d8-62b5-48e2-8dbb-114aa81b99b3 storage1 PT-Q2AG.RNA-Seq.R2.A PT-Q2AG GBM RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fce5ae6-0a02-4802-8167-dd6405540e55/201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ NA 0fce5ae6-0a02-4802-8167-dd6405540e55 storage1