diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 603adf2..828f643 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -1510,8 +1510,8 @@ C3L-00095.WGS.N C3L-00095 LUAD WGS blood_normal CPT0003910002 CPT0003910002.Whol C3L-00095.WGS.N.hg38 C3L-00095 LUAD WGS blood_normal CPT0003910002 758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 197918081619 BAM NA fd525ceb-bac6-4283-9c24-73776b2451f6 5e142d4345d7787e94e6c04d394a8d2e hg38 Blood Derived Normal C3L-00095-31 C3L-00095.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005 CPT0001660005.WholeGenome.RP-1303.bam 148288840542 BAM NA 21e65603-ef7f-43af-bd5d-c51efdba6d4d fc02ed037f6c4364c291966d120b1bfa hg19 Primary Tumor C3L-00095-01 C3L-00095.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005 e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 214912595561 BAM NA ad7da10d-97cd-44e0-95ee-a71b1b488fcd f29196fe8021c623e5f0d96a5ad101de hg38 Primary Tumor C3L-00095-01 -C3L-00095.WGS.T.UNK_q75goG C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM NA 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 hg19 Primary Tumor C3L-00095-01 sample_tag=UNK_q75goG This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot -C3L-00095.WGS.T.UNK_q75goG.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM NA 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 hg38 Primary Tumor C3L-00095-01 sample_tag=UNK_q75goG This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3L-00095.WGS.T.UNK_q75goG C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM NA 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 hg19 Primary Tumor C3L-00095-01 sample_tag=UNK_q75goG Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3L-00095.WGS.T.UNK_q75goG.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM NA 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 hg38 Primary Tumor C3L-00095-01 sample_tag=UNK_q75goG Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters C3L-00095.WXS.A C3L-00095 LUAD WXS tissue_normal CPT0001690009 CPT0001690009.WholeExome.RP-1303.bam 76609175796 BAM NA 383c93e4-a9a9-47f2-88f2-76ef669754c3 cd220380b9468f8a0f43a9c419f714ac hg19 Solid Tissue Normal C3L-00095-06 C3L-00095.WXS.A.hg38 C3L-00095 LUAD WXS tissue_normal CPT0001690009 8fe04429-c7db-4162-aad6-a408b805aa6d_wxs_gdc_realn.bam 103305046426 BAM NA b5f75ffd-bdff-4255-bd17-74dd003f190e 71770d7b5395aaa056469dc45ef2ea53 hg38 Solid Tissue Normal C3L-00095-06 C3L-00095.WXS.N C3L-00095 LUAD WXS blood_normal CPT0003910002 CPT0003910002.WholeExome.RP-1303.bam 39096668759 BAM NA 7080d591-3af7-44eb-963d-e9df4df9c776 494a271302d1ccae9ac1c880599bb753 hg19 Blood Derived Normal C3L-00095-31 @@ -4392,10 +4392,10 @@ C3L-00907.WXS.T.HET_rp9PBB.hg38 C3L-00907 CCRCC WXS tumor CPT0064390009 4c8a309f C3L-00907.WXS.T.hg38 C3L-00907 CCRCC WXS tumor CPT0064370006 f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 42988709588 BAM NA 5b8f478a-209f-47bc-893b-5d7302cd4f79 73e343702883bd9a89a67d572341d3a7 hg38 Primary Tumor C3L-00907-01 C3L-00908.MethArray.Green.A C3L-00908 CCRCC Methylation Array tissue_normal CPT0086370009 204930640120_R01C01_Grn.idat 13677885 IDAT Green f014e7c0-4c1b-4617-abe5-91ded63ed4bc e8759bfcc75666c3142c4c5f0cab1ecb NA Solid Tissue Normal C3L-00908-06 C3L-00908.MethArray.Green.T C3L-00908 CCRCC Methylation Array tumor CPT0086360009 202184900140_R04C01_Grn.idat 13676261 IDAT Green 098f45d0-13aa-4ca2-bffb-34c3a6cf0d5c 422f67f93dce0336fc874f8268f16de0 NA Primary Tumor C3L-00908-03 -C3L-00908.MethArray.Green.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.MethArray.Green.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed C3L-00908.MethArray.Red.A C3L-00908 CCRCC Methylation Array tissue_normal CPT0086370009 204930640120_R01C01_Red.idat 13677885 IDAT Red a850babf-9a42-4309-9233-7b545bf65142 22dc71b942b4c69cbd329eeddaebca01 NA Solid Tissue Normal C3L-00908-06 C3L-00908.MethArray.Red.T C3L-00908 CCRCC Methylation Array tumor CPT0086360009 202184900140_R04C01_Red.idat 13676261 IDAT Red b3e7012a-66b0-4023-a59d-a89ceb1b3118 b9cacbd7ef67594fc80421d8902b71de NA Primary Tumor C3L-00908-03 -C3L-00908.MethArray.Red.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.MethArray.Red.T.UNK_ol2z7j C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a NA Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed C3L-00908.miRNA-Seq.A C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L005_R1_001.unaln.bam 213873054 BAM NA 83df97b4-0757-4d5f-8698-cb7ea7a5feaf 64a1b3e4b04f3c60c019b96eb4768514 NA Solid Tissue Normal C3L-00908-06 C3L-00908.miRNA-Seq.A.hg38 C3L-00908 CCRCC miRNA-Seq tissue_normal CPT0086370006 173c0d6a-bc67-4a72-b6d3-b2a411e24785_mirnaseq_gdc_realn.bam 243270795 BAM NA 7e41687b-c9d2-451f-bd6c-473cc0c58f3d a33bf2470cb149afc4d3515a6ce83eff hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.miRNA-Seq.T.RRNA_rokDXE C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L005_R1_001.unaln.bam 159592216 BAM NA c7baf5bf-ac47-4c48-8613-d1740624348a 918420f6333943bca22ee271d18db2a3 NA Primary Tumor C3L-00908-01 sample_tag=RRNA_rokDXE Duplicate item: Replacement RNA Distribution - original aliquot failed @@ -4421,16 +4421,16 @@ C3L-00908.WGS.N C3L-00908 CCRCC WGS blood_normal CPT0087380001 CPT0087380001.Who C3L-00908.WGS.N.hg38 C3L-00908 CCRCC WGS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 105491829001 BAM NA d439db67-28d0-4b23-acfb-e87f913d6ada 5176c8427cd82b2796bd0e61c6334fcc hg38 Blood Derived Normal C3L-00908-31 C3L-00908.WGS.T C3L-00908 CCRCC WGS tumor CPT0086360009 CPT0086360009.WholeGenome.RP-1303.bam 89053374471 BAM NA b501f200-b532-4a5c-b0f2-7f0ff1c6bd64 536341c7701d23e9c9334d1e55743944 hg19 Primary Tumor C3L-00908-03 C3L-00908.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 136492159740 BAM NA 4702b461-f88e-4036-87cd-c8fc4ee0b733 ed3f6a0865cdf184a800f7b9f5dfe402 hg38 Primary Tumor C3L-00908-03 -C3L-00908.WGS.T.UNK_ol2z7j C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM NA 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot -C3L-00908.WGS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM NA 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.WGS.T.UNK_ol2z7j C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM NA 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed +C3L-00908.WGS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM NA 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed C3L-00908.WXS.A C3L-00908 CCRCC WXS tissue_normal CPT0086370009 CPT0086370009.WholeExome.RP-1303.bam 30544588614 BAM NA d4991d91-01ce-45a4-9b10-485aad476e6a b751d56da3f7b0ebb47da449ef7ed358 hg19 Solid Tissue Normal C3L-00908-06 C3L-00908.WXS.A.hg38 C3L-00908 CCRCC WXS tissue_normal CPT0086370009 b24781e1-0f33-43d9-8170-f244f66254b5_wxs_gdc_realn.bam 41542806405 BAM NA 07483db5-5911-49c3-ba62-ddbeb3f36763 a3f02afe2a04ad9f9a5262654dd86718 hg38 Solid Tissue Normal C3L-00908-06 C3L-00908.WXS.N C3L-00908 CCRCC WXS blood_normal CPT0087380001 CPT0087380001.WholeExome.RP-1303.bam 30365609689 BAM NA 5e5c70f1-421b-455e-974a-a7f7782c2ddc d73d36afe6381f4b44e0561f695473a9 hg19 Blood Derived Normal C3L-00908-31 C3L-00908.WXS.N.hg38 C3L-00908 CCRCC WXS blood_normal CPT0087380001 c0292a50-51ae-4818-ba05-3d2a9534cf2b_gdc_realn.bam 41730911569 BAM NA 9cf12b3e-3b97-4c25-ad51-d1eb46e5680d af151bc10b06cf1ddfa2b553fb3e4863 hg38 Blood Derived Normal C3L-00908-31 C3L-00908.WXS.T C3L-00908 CCRCC WXS tumor CPT0086360009 CPT0086360009.WholeExome.RP-1303.bam 29790261749 BAM NA f4f582bd-83a1-4d41-a4cb-8664d0d070a4 cd447af368efb58b7861fbbd2930fe80 hg19 Primary Tumor C3L-00908-03 C3L-00908.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086360009 a26217f0-b46a-4f44-b45f-afe3874e6b38_gdc_realn.bam 41321920933 BAM NA 7b0b6dc8-1437-4e91-a429-7bd9a48baa58 1f015c2e7f09eb87b9b567a4ac6bddc9 hg38 Primary Tumor C3L-00908-03 -C3L-00908.WXS.T.UNK_ol2z7j C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM NA 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot -C3L-00908.WXS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM NA c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot +C3L-00908.WXS.T.UNK_ol2z7j C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM NA 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 hg19 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed +C3L-00908.WXS.T.UNK_ol2z7j.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM NA c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f hg38 Primary Tumor C3L-00908-01 sample_tag=UNK_ol2z7j Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed C3L-00910.MethArray.Green.A C3L-00910 CCRCC Methylation Array tissue_normal CPT0007870009 203027390029_R03C01_Grn.idat 13676246 IDAT Green ce7a64d5-0c3d-4257-beae-974cf92bb974 ec32b0d8c542bf62478b8eef6c75e8e3 NA Solid Tissue Normal C3L-00910-06 C3L-00910.MethArray.Green.T C3L-00910 CCRCC Methylation Array tumor CPT0007860009 202176290145_R03C01_Grn.idat 13676225 IDAT Green da68f598-4293-4596-a38d-f04ed4cac2f8 b48a389dd72389b89727940929a235bf NA Primary Tumor C3L-00910-02 C3L-00910.MethArray.Red.A C3L-00910 CCRCC Methylation Array tissue_normal CPT0007870009 203027390029_R03C01_Red.idat 13676246 IDAT Red 8a8605ac-fc32-4c40-bfa8-8f3df83d6a5b 47e4a67e542be95248284df8095e60f0 NA Solid Tissue Normal C3L-00910-06 @@ -10526,8 +10526,8 @@ C3L-02365.WGS.N C3L-02365 LUAD WGS blood_normal CPT0116900002 CPT0116900002.Whol C3L-02365.WGS.N.hg38 C3L-02365 LUAD WGS blood_normal CPT0116900002 bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wgs_gdc_realn.bam 92748330856 BAM NA 5a832acb-f0ed-4bac-b73b-fe54daf62b1a ca29d9b33198612cfe8a9b6a0d601ea5 hg38 Blood Derived Normal C3L-02365-31 C3L-02365.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009 CPT0114840009.WholeGenome.RP-1303.bam 55967118343 BAM NA 606c007e-32a3-485a-847f-cc691d1bb307 9eeb3954ef1adc9ca465f82600d214b5 hg19 Primary Tumor C3L-02365-01 C3L-02365.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009 1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wgs_gdc_realn.bam 82750501676 BAM NA cbafe4ae-36af-4011-9ce8-0ea290c6373b 95a7a0c9c06fa948b7980da609e08a47 hg38 Primary Tumor C3L-02365-01 -C3L-02365.WGS.T.UNK_mYLkk1O C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM NA 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 hg19 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters -C3L-02365.WGS.T.UNK_mYLkk1O.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM NA 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae hg38 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3L-02365.WGS.T.UNK_mYLkk1O C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM NA 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 hg19 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3L-02365.WGS.T.UNK_mYLkk1O.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM NA 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae hg38 Primary Tumor C3L-02365-01 sample_tag=UNK_mYLkk1O This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot C3L-02365.WXS.A C3L-02365 LUAD WXS tissue_normal CPT0114880006 CPT0114880006.WholeExome.RP-1303.bam 33401060054 BAM NA b18e30e0-41f5-4761-812f-93a1f6a02b41 dec941d8db572fa44e2c2b6de58aefa0 hg19 Solid Tissue Normal C3L-02365-05 C3L-02365.WXS.A.hg38 C3L-02365 LUAD WXS tissue_normal CPT0114880006 d06fc371-1140-4b9b-85dc-0f57abda4664_wxs_gdc_realn.bam 44834783361 BAM NA e57292ba-138c-4fda-bd41-6f45f211a0a2 c48da16cddcf07720d88d28edfd96d37 hg38 Solid Tissue Normal C3L-02365-05 C3L-02365.WXS.N C3L-02365 LUAD WXS blood_normal CPT0116900002 CPT0116900002.WholeExome.RP-1303.bam 34586669883 BAM NA d083462b-4a5e-40a6-b8a3-847eb89baac8 bb1f95584ad9665e15e79c7415b45950 hg19 Blood Derived Normal C3L-02365-31 @@ -19498,7 +19498,9 @@ C3L-06912.RNA-Seq.R1.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K0 C3L-06912.RNA-Seq.R2.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R2_001.fastq.gz 4045804806 FASTQ NA 9ff596fa-a71c-47cb-8547-114e3ba9da05 42a0d1c88599d3a9538397a067738f51 NA Primary Tumor C3L-06912-01 C3L-06912.RNA-Seq.transcriptome.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.transcriptome.gdc_realn.bam 9751797948 BAM transcriptome 6f2e382a-3c4b-406d-94de-b68d644ad85d 60e18a03fd979d9b24a3dda6f0d71162 hg38 Primary Tumor C3L-06912-01 C3L-06912.WGS.N C3L-06912 LGG WGS blood_normal CPT0389050005 CPT0389050005.WholeGenome.RP-2158.bam 70563558355 BAM NA 767274c6-e610-4a1b-9899-1647d13939b4 d90469b36a7b9e3626ed3f96357b44bb hg19 Blood Derived Normal C3L-06912-31 +C3L-06912.WGS.N.hg38 C3L-06912 LGG WGS blood_normal CPT0389050005 b61c8ac3-5e86-4b02-a3aa-e97d6b726278_wgs_gdc_realn.bam 208686775527 BAM NA d460cddb-a3c7-4d98-81d7-b8ba85d26d9f 71aff830a35e54295f5234eff72d4f0f hg38 Blood Derived Normal C3L-06912-31 C3L-06912.WGS.T C3L-06912 LGG WGS tumor CPT0388940011 CPT0388940011.WholeGenome.RP-2158.bam 129779104068 BAM NA b6f271ab-8986-4465-a214-f06c7e3b3d37 47ba8b844ec46eb1b3c81ca285afc00f hg19 Primary Tumor C3L-06912-01 +C3L-06912.WGS.T.hg38 C3L-06912 LGG WGS tumor CPT0388940011 cd25fa75-5b4a-422b-93b9-7e1c7c7c36af_wgs_gdc_realn.bam 389435165923 BAM NA 89e198c5-0392-47c0-943f-4f4a95fa8275 b584aa63fb506398d82b2148028ae839 hg38 Primary Tumor C3L-06912-01 C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-54 C3L-06951.miRNA-Seq.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM NA b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca NA Primary Blood Derived Cancer - Bone Marrow C3L-06951-57 @@ -20627,8 +20629,8 @@ C3N-00217.WGS.N C3N-00217 LUAD WGS blood_normal CPT0092500002 CPT0092500002.Whol C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal CPT0092500002 df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM NA 7c0fa13b-ae71-42df-800a-a9480cc67133 c53a7e2b9034753a377407f251aa13af hg38 Blood Derived Normal C3N-00217-31 C3N-00217.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010 CPT0090570010.WholeGenome.RP-1303.bam 77202007467 BAM NA c0c2069c-1cd9-4e3b-ae40-4617f7c010dd 2cd3b8753fec2a69f03f85c588e0d6bb hg19 Primary Tumor C3N-00217-02,C3N-00217-04 C3N-00217.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010 e6268f9c-fd73-4163-8824-eca1dab52d32_wgs_gdc_realn.bam 111488141459 BAM NA c3101c27-4922-4e8e-890a-d8f838e04751 88e105dd4bc8e4e64dfe5d24c7fc1f75 hg38 Primary Tumor C3N-00217-02,C3N-00217-04 -C3N-00217.WGS.T.UNK_k2PnDB6 C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM NA b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e hg19 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot -C3N-00217.WGS.T.UNK_k2PnDB6.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM NA 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da hg38 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-00217.WGS.T.UNK_k2PnDB6 C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM NA b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e hg19 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3N-00217.WGS.T.UNK_k2PnDB6.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM NA 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da hg38 Primary Tumor C3N-00217-02 sample_tag=UNK_k2PnDB6 Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters C3N-00217.WXS.A C3N-00217 LUAD WXS tissue_normal CPT0090600009 CPT0090600009.WholeExome.RP-1303.bam 35193499504 BAM NA a81d1be0-5e52-42a1-877e-6e3354c41ae0 049a85e9fe159a49f5b954c1d6c6bfb1 hg19 Solid Tissue Normal C3N-00217-06 C3N-00217.WXS.A.hg38 C3N-00217 LUAD WXS tissue_normal CPT0090600009 e21dba0d-f7c8-43ca-abe2-d532ac286c53_wxs_gdc_realn.bam 48560284391 BAM NA bb1871eb-69df-4c1e-a654-bd2212f6a763 d76fd0c2027b4f42ed025ef3a60fefc1 hg38 Solid Tissue Normal C3N-00217-06 C3N-00217.WXS.N C3N-00217 LUAD WXS blood_normal CPT0092500002 CPT0092500002.WholeExome.RP-1303.bam 25344310806 BAM NA b6c851ae-dc4e-4364-91ce-87754a3cd60f 23d61aac67f08a677639acdd786f8e2e hg19 Blood Derived Normal C3N-00217-31 @@ -25107,9 +25109,7 @@ C3N-01079.WXS.N.hg38 C3N-01079 UCEC WXS blood_normal CPT0211240002 58064c6a-c59b C3N-01079.WXS.T C3N-01079 UCEC WXS tumor CPT0211120007 CPT0211120007.WholeExome.RP-1303.bam 23292018621 BAM NA 6deaf1ce-6405-47e4-9967-cda4828ab11b a2e9339384b45ab1efe21acb3318ed1a hg19 Primary Tumor C3N-01079-01 C3N-01079.WXS.T.hg38 C3N-01079 UCEC WXS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wxs_gdc_realn.bam 32289014569 BAM NA 8e90126a-f7b3-4e3c-be03-9bc5649de5d4 da1ffdb7c7837a94dfffc206405e3064 hg38 Primary Tumor C3N-01079-01 C3N-01080.MethArray.Green.A C3N-01080 CCRCC Methylation Array tissue_normal CPT0211340006 204930630081_R03C01_Grn.idat 13677885 IDAT Green f524b12a-703c-4bbb-852c-4388a7988fc1 01e9ebee992df49b3e3308cfb01d96c7 NA Solid Tissue Normal C3N-01080-06 -C3N-01080.MethArray.Green.T C3N-01080 CCRCC Methylation Array tumor CPT0211320006 203219640095_R07C01_Grn.idat 13676216 IDAT Green 500f1bc6-cd94-405b-9414-b70e60484a08 969425da800e3183fd0f01f8a73f47dd NA Primary Tumor C3N-01080-03 C3N-01080.MethArray.Red.A C3N-01080 CCRCC Methylation Array tissue_normal CPT0211340006 204930630081_R03C01_Red.idat 13677885 IDAT Red 1234a8af-5e29-4859-ad25-0f53b753ac0d 036d93ef8e5b5f93eb30772086e125ff NA Solid Tissue Normal C3N-01080-06 -C3N-01080.MethArray.Red.T C3N-01080 CCRCC Methylation Array tumor CPT0211320006 203219640095_R07C01_Red.idat 13676216 IDAT Red 9b1a2bb1-8cee-49a7-8931-8a2fbb8eb6f5 83c25f2997d008337ee6ad449c7238c9 NA Primary Tumor C3N-01080-03 C3N-01080.miRNA-Seq.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L003_R1_001.unaln.bam 152442457 BAM NA d0947c5c-0531-4424-b590-6f3788393d77 b4a2508cb9f338ef87175ea1ce555404 NA Solid Tissue Normal C3N-01080-06 C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM NA 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 hg38 Solid Tissue Normal C3N-01080-06 C3N-01080.miRNA-Seq.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM NA b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f NA Primary Tumor C3N-01080-03 @@ -25768,7 +25768,9 @@ C3N-01199.RNA-Seq.genomic.T.hg38 C3N-01199 GBM RNA-Seq tumor CPT0457680008 0e56f C3N-01199.RNA-Seq.R1.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R1_001.fastq.gz 5000286535 FASTQ NA 742a45a1-2eb8-44d5-912e-8747b99a93d4 2153ef9bd3c1d42588e4749539a8fdbf NA Primary Tumor C3N-01199-04 C3N-01199.RNA-Seq.R2.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R2_001.fastq.gz 5203845866 FASTQ NA d457808c-dc8e-4904-9c85-9a6c5fff4b0a 02bce17f1695973dd385d8cea6689575 NA Primary Tumor C3N-01199-04 C3N-01199.WGS.N C3N-01199 GBM WGS blood_normal CPT0402850001 CPT0402850001.WholeGenome.RP-2158.bam 60409941422 BAM NA 9ac6dbcf-a44d-4871-bc05-54e7ad5b79da bd52da88c8c74ad14e85d9a240018fc4 hg19 Blood Derived Normal C3N-01199-31 +C3N-01199.WGS.N.hg38 C3N-01199 GBM WGS blood_normal CPT0402850001 84eaa6ad-f7de-4eef-9f8e-e719fcaa5637_wgs_gdc_realn.bam 178510631390 BAM NA 357f6190-0ba1-44b2-923a-22b5e92db560 3fbd2d316ab90c3a57aa9806cd3faebb hg38 Blood Derived Normal C3N-01199-31 C3N-01199.WGS.T C3N-01199 GBM WGS tumor CPT0457680011 CPT0457680011.WholeGenome.RP-2158.bam 115148443436 BAM NA ff7d7777-36ac-47c6-8c34-7a0fa07b17c8 62b873808eccd22e0b3272f8473fdc60 hg19 Primary Tumor C3N-01199-04 +C3N-01199.WGS.T.hg38 C3N-01199 GBM WGS tumor CPT0457680011 ddf0920c-fcc6-4fc9-b037-fe9b2f03e6b7_wgs_gdc_realn.bam 342839849683 BAM NA c1549374-44d6-4bce-81e5-800c3becf057 baaf604ba808cae74d21642be7c00589 hg38 Primary Tumor C3N-01199-04 C3N-01200.MethArray.Green.A C3N-01200 CCRCC Methylation Array tissue_normal CPT0075170009 203027380024_R02C01_Grn.idat 13676241 IDAT Green 13f31e09-fb0c-4826-98b0-35e9ac240679 a4532e636b295ff7479a800be4fab853 NA Solid Tissue Normal C3N-01200-06 C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor CPT0075130009 202184990059_R08C01_Grn.idat 13676231 IDAT Green 3ceb6106-0d95-40e2-8993-b545fc0ea3ef cc153bcdbbc599278d49da61362a91a4 NA Primary Tumor C3N-01200-02 C3N-01200.MethArray.Green.T.HET_xBGLLn C3N-01200 CCRCC Methylation Array tumor CPT0075160012 204372030023_R04C01_Grn.idat 13677895 IDAT Green 45deb597-b3eb-4918-81ee-e386fb0e93e9 24a0c1e10008a3a1b659507de3022f9c NA Primary Tumor C3N-01200-05 sample_tag=HET_xBGLLn Duplicate item: CCRCC Tumor heterogeneity study aliquot @@ -28671,8 +28673,8 @@ C3N-01823.WGS.N C3N-01823 LUAD WGS blood_normal CPT0097610002 CPT0097610002.Whol C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal CPT0097610002 7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM NA 59fd9c47-a049-4483-90bf-3650711651ee 1d83c76bafae811ea4b81e87b3a0edb3 hg38 Blood Derived Normal C3N-01823-31,C3N-01823-71 C3N-01823.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009 CPT0097580009.WholeGenome.RP-1303.bam 65656450281 BAM NA c85d58e0-c631-494c-bd98-314a1dc8134e 66c86771c4dc933a8d6bc193c02d6d63 hg19 Primary Tumor C3N-01823-02 C3N-01823.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009 ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wgs_gdc_realn.bam 96055710690 BAM NA cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad ff311311a00abf25d13ba1cd79fd3578 hg38 Primary Tumor C3N-01823-02 -C3N-01823.WGS.T.UNK_mqAXELr C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM NA 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 hg19 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot -C3N-01823.WGS.T.UNK_mqAXELr.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM NA 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 hg38 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot +C3N-01823.WGS.T.UNK_mqAXELr C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM NA 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 hg19 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters +C3N-01823.WGS.T.UNK_mqAXELr.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM NA 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 hg38 Primary Tumor C3N-01823-02 sample_tag=UNK_mqAXELr Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters C3N-01823.WXS.A C3N-01823 LUAD WXS tissue_normal CPT0097600009 CPT0097600009.WholeExome.RP-1303.bam 34217317088 BAM NA 771f8925-7283-4736-8e3e-f126c481e2f1 82c84f0a3406f45f76094bb7708a5972 hg19 Solid Tissue Normal C3N-01823-06 C3N-01823.WXS.A.hg38 C3N-01823 LUAD WXS tissue_normal CPT0097600009 ee86383b-00b4-482e-b536-f27a462cf22d_wxs_gdc_realn.bam 46062396631 BAM NA ae1ed438-07f1-44aa-9690-121cfdb635e9 e8d141483f556977231f0e4be01c39eb hg38 Solid Tissue Normal C3N-01823-06 C3N-01823.WXS.N C3N-01823 LUAD WXS blood_normal CPT0097610002 CPT0097610002.WholeExome.RP-1303.bam 26376253830 BAM NA 9609fe2a-7678-4fb7-aed1-37decce3b4a1 662777ce742428bf53774cd84174dcb2 hg19 Blood Derived Normal C3N-01823-31,C3N-01823-71 @@ -37642,7 +37644,9 @@ C3N-03788.RNA-Seq.R1.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K0 C3N-03788.RNA-Seq.R2.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R2_001.fastq.gz 3808720166 FASTQ NA 8ea7fb5a-7ab8-4ce4-bf91-abeb62546d76 29397817e7be40c6146805e5c326309c NA Primary Tumor C3N-03788-03 C3N-03788.RNA-Seq.transcriptome.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.transcriptome.gdc_realn.bam 7571693638 BAM transcriptome 48973af3-bff5-47d4-932a-af8466b1a338 f6e0095a589476561d2c936afecbc28e hg38 Primary Tumor C3N-03788-03 C3N-03788.WGS.N C3N-03788 GBM WGS blood_normal CPT0457870001 CPT0457870001.WholeGenome.RP-2158.bam 62556087199 BAM NA 29306a95-3819-46f2-8462-a99e2addd672 5c283d67b8d7157c2d0e37de16aca6c1 hg19 Blood Derived Normal C3N-03788-31 +C3N-03788.WGS.N.hg38 C3N-03788 GBM WGS blood_normal CPT0457870001 6b7aebd8-b57b-4532-b65d-586e24b04040_wgs_gdc_realn.bam 183914747518 BAM NA 95cd212c-7310-4040-8f11-a7421fcf517a df39e513b40473609247d99a2cf19c2c hg38 Blood Derived Normal C3N-03788-31 C3N-03788.WGS.T C3N-03788 GBM WGS tumor CPT0457770011 CPT0457770011.WholeGenome.RP-2158.bam 120084054423 BAM NA 112eecb3-e804-41e8-be96-3ad019bc58ec 64ff6971acadb7ec90b0b85f26b13ea4 hg19 Primary Tumor C3N-03788-03 +C3N-03788.WGS.T.hg38 C3N-03788 GBM WGS tumor CPT0457770011 e3011e82-87e8-42bf-a3e4-9d495a3a70fa_wgs_gdc_realn.bam 356273644509 BAM NA 1464deeb-bdb2-4877-b6a3-cc37685302de ec6f3aa3e751572d22977d399b0ba8b3 hg38 Primary Tumor C3N-03788-03 C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 NA Primary Tumor C3N-03789-05 C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 NA Primary Tumor C3N-03789-05 C3N-03789.miRNA-Seq.T C3N-03789 GBM miRNA-Seq tumor CPT0244860009 200403_UNC31-K00269_0274_AHCF7GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 225451718 BAM NA b660df27-cdb3-4bb7-960c-cd23e8296233 ff52890e8305588e649255f692288db9 NA Primary Tumor C3N-03789-05 diff --git a/CPTAC3.Demographics.dat b/CPTAC3.Demographics.dat index 00b68d1..b08da1b 100644 --- a/CPTAC3.Demographics.dat +++ b/CPTAC3.Demographics.dat @@ -1,4 +1,4 @@ -# case disease ethnicity gender race days_to_birth +case disease ethnicity gender race days_to_birth 11LU013 LUAD not hispanic or latino male asian -21627 11LU016 LUAD not hispanic or latino male asian -22733 11LU022 LUAD not hispanic or latino male asian -19370 @@ -158,6 +158,7 @@ C3L-00962 UCEC not reported female white -25563 C3L-00963 UCEC not reported female white -21815 C3L-00965 LSCC not reported male not reported -23305 C3L-00966 CCRCC not reported female not reported -21878 +C3L-00967 CM not reported female other -25489 C3L-00968 CCRCC not reported male not reported -22612 C3L-00969 CCRCC not reported male not reported -14933 C3L-00970 CCRCC not reported male not reported -20187 @@ -168,6 +169,7 @@ C3L-00980 CCRCC not reported male not reported -23135 C3L-00981 CCRCC not reported male not reported -19908 C3L-00982 CCRCC not reported male not reported -23210 C3L-00987 HNSCC not reported male not reported -22430 +C3L-00989 CM not reported male other -20895 C3L-00991 CCRCC not reported male not reported -16703 C3L-00993 LSCC not reported male not reported -27610 C3L-00994 HNSCC not reported male not reported -18263 @@ -193,6 +195,7 @@ C3L-01052 PDA not reported female not reported -23696 C3L-01053 PDA not reported female not reported -27798 C3L-01054 PDA not reported female not reported -14036 C3L-01061 GBM not reported male not reported -24196 +C3L-01063 CM not reported female other -30810 C3L-01064 UCEC not hispanic or latino female white -20028 C3L-01102 CCRCC not reported male not reported -17168 C3L-01106 CCRCC not reported female not reported -18693 @@ -338,6 +341,7 @@ C3L-01971 PDA not hispanic or latino male white -24359 C3L-01976 CCRCC hispanic or latino female white -23587 C3L-01978 CCRCC not hispanic or latino female white -20952 C3L-02041 GBM not hispanic or latino female white -18904 +C3L-02102 CM not hispanic or latino male white -23767 C3L-02109 PDA not reported female not reported -28885 C3L-02112 PDA not reported male not reported -24455 C3L-02115 PDA not reported male not reported -29237 @@ -426,11 +430,13 @@ C3L-02604 PDA not hispanic or latino female white -31007 C3L-02606 PDA not reported female not reported -25148 C3L-02610 PDA not reported male not reported -29536 C3L-02613 PDA not reported female not reported -19066 +C3L-02615 CM not reported male white -29454 C3L-02616 LUAD not reported male not reported -23275 C3L-02617 HNSCC not reported male not reported -23710 C3L-02618 LSCC not reported male not reported -25193 C3L-02619 LSCC not reported male not reported -25633 C3L-02621 HNSCC not reported male not reported -25156 +C3L-02622 CM not reported male white -15590 C3L-02624 LSCC not reported male not reported -23126 C3L-02625 LSCC not reported male not reported -24167 C3L-02627 LSCC not reported female not reported -23667 @@ -439,6 +445,7 @@ C3L-02642 GBM not reported male not reported -28231 C3L-02643 LUAD not reported male not reported -24797 C3L-02644 GBM not reported female not reported -21234 C3L-02646 LSCC not reported male not reported -27321 +C3L-02647 CM not reported male white -25244 C3L-02648 LSCC not reported male not reported -26627 C3L-02649 LSCC not reported male not reported -22773 C3L-02650 LSCC not reported male not reported -19414 @@ -511,9 +518,16 @@ C3L-03308 AML not reported female not reported -24097 C3L-03348 PDA not reported male not reported -13721 C3L-03350 PDA not reported male not reported -23078 C3L-03356 PDA not reported male not reported -26098 +C3L-03362 CM not reported male other -15189 +C3L-03364 CM not reported female other -19844 +C3L-03367 CM not reported male other -26149 C3L-03371 PDA not reported male not reported -19582 C3L-03372 GBM not reported male not reported -11529 +C3L-03374 CM not reported male other -30274 +C3L-03377 CM not reported female other -26673 C3L-03378 HNSCC not reported male not reported -20019 +C3L-03381 CM not reported male other -28844 +C3L-03382 CM not reported male other -26136 C3L-03385 GBM not reported female not reported -26404 C3L-03387 GBM not reported male not reported -25839 C3L-03388 PDA not reported male not reported -24887 @@ -571,6 +585,7 @@ C3L-03982 LSCC not reported male not reported -23764 C3L-03984 LUAD not reported male not reported -21834 C3L-03985 LUAD not reported male not reported -24731 C3L-03987 LSCC not reported male not reported -23102 +C3L-04011 CM not reported female white -21276 C3L-04013 LSCC not reported male not reported -22508 C3L-04014 LSCC not reported male not reported -21035 C3L-04025 HNSCC not reported male not reported -25290 @@ -594,6 +609,8 @@ C3L-04090 GBM not hispanic or latino female white -26123 C3L-04197 HNSCC not reported male not reported -19023 C3L-04198 HNSCC not reported male not reported -18444 C3L-04199 HNSCC not reported male not reported -29564 +C3L-04207 CM not reported female other -30121 +C3L-04212 CM not reported male white -27946 C3L-04213 GBM not reported female not reported -13671 C3L-04216 LSCC not reported male not reported -24362 C3L-04231 AML not reported female not reported -21217 @@ -607,6 +624,7 @@ C3L-04263 AML not reported female not reported -21187 C3L-04265 AML not reported female not reported -23490 C3L-04269 AML not reported male not reported -25950 C3L-04270 AML not reported female not reported -26048 +C3L-04331 CM not reported male white -32040 C3L-04336 LSCC not reported male not reported -21069 C3L-04339 GBM not reported male not reported -23161 C3L-04354 HNSCC not reported male not reported -22041 @@ -638,16 +656,21 @@ C3L-04537 GBM not hispanic or latino male white -18762 C3L-04539 GBM not hispanic or latino male white -27684 C3L-04728 LSCC not hispanic or latino female white -25926 C3L-04731 GBM not reported male not reported -23774 +C3L-04732 CM not reported male white -30365 +C3L-04733 CM not reported female white -28623 +C3L-04739 CM not reported female white -25689 C3L-04746 LSCC not reported male not reported -25699 C3L-04749 LSCC not reported male not reported -20875 C3L-04757 LUAD not reported male not reported -24886 C3L-04759 LUAD not reported female not reported -24773 +C3L-04760 CM not reported male white -30367 C3L-04761 AML not reported male not reported -27223 C3L-04763 AML not reported female not reported -31080 C3L-04764 AML not reported female not reported -28831 C3L-04766 AML not reported female not reported -15640 C3L-04767 AML not reported female not reported -21368 C3L-04786 LSCC not reported male not reported -24861 +C3L-04787 CM not reported female white -32872 C3L-04791 HNSCC not reported male not reported -29749 C3L-04792 LSCC not reported male not reported -27365 C3L-04795 GBM not reported male not reported -13503 @@ -680,16 +703,28 @@ C3L-04971 AML not reported male not reported -15380 C3L-04976 AML not reported female not reported -25251 C3L-05020 LSCC not hispanic or latino female white -32872 C3L-05022 LSCC not hispanic or latino male white -24846 +C3L-05027 CM not hispanic or latino male white -23678 C3L-05029 HNSCC not hispanic or latino female white -29128 C3L-05145 LSCC not reported male not reported -26013 C3L-05148 LSCC not reported male not reported -21513 C3L-05150 LSCC not reported male not reported -23987 C3L-05172 LSCC not reported male not reported -24626 +C3L-05175 CM not reported female white -22975 C3L-05176 LSCC not reported male not reported -18258 +C3L-05206 CM not reported female white -28619 C3L-05212 LSCC not reported female not reported -21430 C3L-05221 LSCC not reported male not reported -26525 C3L-05225 LSCC not reported female not reported -26581 +C3L-05229 CM not reported male white -30074 +C3L-05235 CM not reported male white null C3L-05239 GBM not reported male not reported -14364 +C3L-05259 CM not reported male white -30224 +C3L-05261 CM not reported male white -14788 +C3L-05262 CM not reported male white -19625 +C3L-05286 CM not reported female white -18323 +C3L-05290 CM not reported female white -26889 +C3L-05299 CM not reported male white -26405 +C3L-05302 CM not reported male white -26559 C3L-05313 AML not reported female not reported -20246 C3L-05315 AML not reported male not reported -19073 C3L-05316 AML not reported female not reported -15395 @@ -703,6 +738,7 @@ C3L-05331 AML not reported male not reported -23133 C3L-05334 AML not reported male not reported -13916 C3L-05335 AML not reported female not reported -15545 C3L-05338 AML not reported male not reported -16793 +C3L-05362 CM not reported female white -24806 C3L-05369 LSCC not reported male not reported -21830 C3L-05386 AML not hispanic or latino female white -15315 C3L-05387 AML not hispanic or latino male white -24141 @@ -723,19 +759,29 @@ C3L-05448 HNSCC not hispanic or latino male white -30130 C3L-05459 HNSCC not hispanic or latino male white -21385 C3L-05465 HNSCC not hispanic or latino female white -23039 C3L-05481 GBM not reported female not reported null +C3L-05517 CM not reported female white -27477 +C3L-05518 CM not reported female white -29238 +C3L-05527 CM not reported female white -24893 +C3L-05554 CM not reported female white -27238 +C3L-05556 CM not reported female white -25964 C3L-05571 UCEC not hispanic or latino female black or african american -21214 C3L-05574 HNSCC not hispanic or latino male Unknown -15708 +C3L-05598 CM not reported male white -27423 +C3L-05638 CM not reported male white -28112 +C3L-05644 CM not reported female white -25741 C3L-05678 AML not hispanic or latino female white -12279 C3L-05693 LSCC not hispanic or latino female white -25533 C3L-05719 HNSCC not hispanic or latino male white -23797 C3L-05759 HNSCC not reported male not reported -23817 C3L-05761 HNSCC not reported male not reported -21899 C3L-05763 HNSCC not reported female not reported -27369 +C3L-05781 CM not reported male white -22556 C3L-05811 AML not hispanic or latino female white -22652 C3L-05815 AML not hispanic or latino male white -7079 C3L-05816 AML not reported male not reported -26764 C3L-05818 AML not reported female not reported -17486 C3L-05819 AML not reported female not reported -29260 +C3L-05839 CM not reported male white -31819 C3L-05848 UCEC not hispanic or latino female white -25797 C3L-05849 UCEC not hispanic or latino female black or african american -23490 C3L-05861 AML not reported female not reported -23824 @@ -760,6 +806,15 @@ C3L-05898 AML not reported female not reported -28998 C3L-05905 AML not reported female not reported -11729 C3L-05907 AML not reported male not reported -17119 C3L-05908 AML not reported female not reported -23471 +C3L-05973 CM not reported male white -25391 +C3L-05987 CM not reported male white -29202 +C3L-06015 CM not reported male white -31072 +C3L-06017 CM not reported male white -26380 +C3L-06019 CM not reported male white -27482 +C3L-06020 CM not reported male white -25449 +C3L-06023 CM not reported female white -24752 +C3L-06025 CM not reported female white -26130 +C3L-06028 CM not reported male white -21694 C3L-06061 AML not reported male not reported -22275 C3L-06063 AML not reported female not reported -18260 C3L-06064 AML not reported male not reported -24297 @@ -777,8 +832,24 @@ C3L-06082 AML not reported female not reported -25228 C3L-06087 AML not hispanic or latino male white -24850 C3L-06089 AML not hispanic or latino male white -23404 C3L-06090 AML not hispanic or latino male asian -13926 +C3L-06091 CM not reported female white -16759 +C3L-06096 CM not reported male white -23277 +C3L-06110 CM not reported female white -20176 +C3L-06113 CM not reported male white -22890 +C3L-06115 CM not reported male white -23079 C3L-06166 HNSCC not hispanic or latino female white -19941 C3L-06169 LSCC not reported male not reported -28472 +C3L-06195 CM not reported female white -19009 +C3L-06206 CM not reported female white -26220 +C3L-06207 CM not reported female white -23484 +C3L-06212 CM not reported male white -26356 +C3L-06299 CM not reported male white -26247 +C3L-06311 CM not reported male white -24484 +C3L-06333 CM not reported female white -29744 +C3L-06338 CM not reported male white -21650 +C3L-06339 CM not reported male white -22077 +C3L-06340 CM not reported female white -21944 +C3L-06349 CM not reported female white -27208 C3L-06352 AML not hispanic or latino male white -24717 C3L-06356 AML not reported male not reported -25686 C3L-06357 AML not reported male not reported -22055 @@ -789,6 +860,13 @@ C3L-06368 AML not reported female not reported -18259 C3L-06369 AML not reported male not reported -27521 C3L-06374 AML not reported female not reported -25791 C3L-06386 AML not reported male not reported -24136 +C3L-06395 CM not reported male white -22896 +C3L-06424 CM not reported male white -25996 +C3L-06427 CM not reported female white -29032 +C3L-06428 CM not reported male white -29124 +C3L-06430 CM not reported male white -24514 +C3L-06433 CM not reported female white -24877 +C3L-06435 CM not reported female white -23073 C3L-06534 AML not reported female not reported -28577 C3L-06536 AML not reported female not reported -23000 C3L-06537 AML not reported female not reported -14567 @@ -799,11 +877,13 @@ C3L-06541 AML not reported female not reported -26628 C3L-06542 AML not reported male not reported -29195 C3L-06543 AML not reported female not reported -24567 C3L-06625 GBM not reported female not reported null +C3L-06715 CM not reported female white null C3L-06801 AML not reported female not reported -21287 C3L-06803 AML not reported male not reported -18360 C3L-06806 AML not reported male not reported -26075 C3L-06807 AML not reported male not reported -24887 C3L-06809 AML not reported male not reported -25192 +C3L-06933 CM not reported female white -29657 C3L-06951 AML not reported male not reported -24818 C3L-06952 AML not reported female not reported -31578 C3L-06953 AML not reported female not reported -26105 @@ -822,6 +902,7 @@ C3L-07034 PDA Unknown male white null C3L-07035 PDA Unknown male Unknown null C3L-07036 PDA Unknown male white null C3L-07037 PDA Unknown female white null +C3L-07111 CM not reported male white -21488 C3L-07202 GBM not hispanic or latino male white -27564 C3L-07213 GBM not hispanic or latino female white -10254 C3L-07437 AML not hispanic or latino female white -27419 @@ -839,7 +920,7 @@ C3N-00168 CCRCC not reported male not reported -17349 C3N-00169 LUAD not reported male not reported -21005 C3N-00175 LUAD not reported male not reported -26470 C3N-00177 CCRCC not reported male not reported -19161 -C3N-00179 CM not reported male not reported -25370 +C3N-00179 CM not reported male asian -25370 C3N-00180 LUAD not reported male not reported -20625 C3N-00194 CCRCC not hispanic or latino female white -18885 C3N-00198 PDA not hispanic or latino male white -20306 @@ -847,6 +928,7 @@ C3N-00199 LUAD not hispanic or latino male white -24010 C3N-00200 UCEC not hispanic or latino female black or african american -26248 C3N-00203 LUAD not reported male not reported -26353 C3N-00204 HNSCC not reported female not reported -23017 +C3N-00209 CM not reported female other -29831 C3N-00211 LSCC not reported male not reported -14952 C3N-00217 LUAD not reported female not reported -21854 C3N-00221 LSCC not hispanic or latino male not reported -28711 @@ -987,6 +1069,7 @@ C3N-00860 UCEC not reported female not reported -24752 C3N-00866 UCEC not hispanic or latino female white -28243 C3N-00871 HNSCC not reported male not reported -21468 C3N-00872 UCEC not reported female not reported -27503 +C3N-00874 CM not reported male white -20511 C3N-00880 UCEC not reported female not reported -22438 C3N-00953 CCRCC not hispanic or latino male asian -15137 C3N-00954 PDA not hispanic or latino male white -30720 @@ -1092,8 +1175,12 @@ C3N-01415 LUAD not reported male not reported -26008 C3N-01416 LUAD not reported female not reported -24540 C3N-01417 LUAD not reported male not reported -23444 C3N-01419 LUAD not reported male not reported -21422 +C3N-01481 CM not reported female other -26853 C3N-01488 LUAD not reported male not reported -19817 C3N-01489 LUAD not reported male not reported -23810 +C3N-01493 CM not reported male other -12770 +C3N-01494 CM not reported female other -23476 +C3N-01495 CM not reported female other null C3N-01502 PDA not hispanic or latino male white -27522 C3N-01505 GBM not hispanic or latino male white -27131 C3N-01510 UCEC not hispanic or latino female white -19465 @@ -1107,6 +1194,8 @@ C3N-01524 CCRCC not reported male not reported -22558 C3N-01525 UCEC not reported female not reported -28217 C3N-01526 UCEC not reported female not reported -24258 C3N-01529 UCEC not reported female not reported -25559 +C3N-01530 CM not reported male other -30485 +C3N-01533 CM not reported male other -26761 C3N-01535 SAR not reported female not reported -28280 C3N-01536 CCRCC not reported male not reported -23816 C3N-01537 UCEC not reported female not reported -27304 @@ -1153,11 +1242,13 @@ C3N-01816 GBM not reported female not reported -19634 C3N-01817 GBM not reported female not reported -22797 C3N-01818 GBM not reported male not reported -22156 C3N-01823 LUAD not reported male not reported -23322 +C3N-01824 CM not reported male other -21302 C3N-01825 UCEC not reported female not reported -25659 C3N-01828 CCRCC not reported female not reported -24734 C3N-01830 UCEC not reported female not reported -26812 C3N-01842 LUAD not reported male not reported -25527 C3N-01843 UCEC not reported female not reported -25136 +C3N-01844 CM not reported female other -23051 C3N-01846 LSCC not reported male not reported -25518 C3N-01847 UCEC not reported female not reported -21027 C3N-01848 UCEC not reported female not reported -24957 @@ -1205,9 +1296,12 @@ C3N-02005 CCRCC not reported male not reported -23084 C3N-02010 PDA not hispanic or latino female black or african american -22742 C3N-02012 UCEC not hispanic or latino female white -25277 C3N-02015 CCRCC not hispanic or latino male white -19939 +C3N-02026 CM not reported female other -29420 C3N-02027 UCEC not reported female not reported -20045 C3N-02028 UCEC not reported female not reported -24954 C3N-02030 UCEC not reported female not reported -22893 +C3N-02033 CM not reported female other -28057 +C3N-02035 CM not reported male other -23576 C3N-02061 UCEC not reported female not reported -24760 C3N-02062 UCEC not reported female not reported -24730 C3N-02063 CCRCC not reported male not reported -18159 @@ -1265,6 +1359,7 @@ C3N-02263 CCRCC not reported female not reported -25262 C3N-02264 CCRCC not reported male not reported -25037 C3N-02265 CCRCC not reported female not reported -20336 C3N-02266 CCRCC not reported male not reported -20536 +C3N-02270 CM not reported male white -27837 C3N-02271 UCEC not reported female not reported -21506 C3N-02274 UCEC not reported female not reported -29493 C3N-02275 HNSCC not reported male not reported -25376 @@ -1283,12 +1378,17 @@ C3N-02296 UCEC not reported female not reported -30417 C3N-02298 UCEC not reported female not reported -30352 C3N-02300 LSCC not reported female not reported -25366 C3N-02302 UCEC not reported female not reported -25399 +C3N-02324 CM not reported male other -14084 +C3N-02327 CM not reported female other -16633 +C3N-02330 CM not reported female other -18726 C3N-02332 CCRCC not reported female not reported -24138 C3N-02333 HNSCC not reported male not reported -22285 +C3N-02335 CM not reported male other -25246 C3N-02337 UCEC not reported female not reported -25527 C3N-02338 CCRCC not reported male not reported -21451 C3N-02339 LSCC not reported male not reported -28848 C3N-02372 UCEC not reported female not reported -19828 +C3N-02373 CM not reported male other -24460 C3N-02374 LSCC not reported male not reported -24670 C3N-02375 LSCC not reported male not reported -21871 C3N-02379 LUAD not reported female not reported -20827 @@ -1332,6 +1432,7 @@ C3N-02598 UCEC not reported female not reported -21956 C3N-02599 GBM not reported male not reported -23847 C3N-02631 UCEC not reported female not reported -28135 C3N-02632 UCEC not reported female not reported -21150 +C3N-02633 CM not reported female white -20362 C3N-02635 UCEC not reported female not reported -20705 C3N-02636 UCEC not reported female not reported -26559 C3N-02637 UCEC not reported female not reported -19558 @@ -1427,6 +1528,7 @@ C3N-03021 CCRCC not reported male not reported -18491 C3N-03025 GBM not reported male not reported -28566 C3N-03027 HNSCC not reported male not reported -23896 C3N-03028 HNSCC not reported male not reported -21881 +C3N-03029 CM not reported male white -25692 C3N-03038 LUAD not hispanic or latino male white null C3N-03039 PDA not hispanic or latino female white null C3N-03042 HNSCC hispanic or latino female not reported -24572 @@ -1449,6 +1551,7 @@ C3N-03086 PDA not reported male not reported -25502 C3N-03088 GBM not reported female not reported -11589 C3N-03092 LSCC not reported male not reported null C3N-03093 LSCC not reported female not reported null +C3N-03097 CM not reported male other null C3N-03173 PDA not hispanic or latino male white -23662 C3N-03180 GBM not reported male not reported -19399 C3N-03182 GBM not reported male not reported -17461 @@ -1464,11 +1567,18 @@ C3N-03205 LUAD not reported female not reported -15778 C3N-03210 LUAD not reported male not reported -18827 C3N-03211 PDA not reported male not reported -16048 C3N-03212 LUAD not reported female not reported -25659 +C3N-03220 CM not reported female other -31488 C3N-03222 LUAD not reported male not reported -26630 +C3N-03223 CM not reported female other -19793 C3N-03225 LUAD not reported male not reported -20775 C3N-03226 HNSCC not reported male not reported -19938 +C3N-03228 CM not reported male other -11393 +C3N-03229 CM not reported male other -27702 C3N-03233 LUAD not reported male not reported -24895 +C3N-03234 CM not reported male other -22717 +C3N-03235 CM not reported female other -19697 C3N-03238 LUAD not reported male not reported -17380 +C3N-03239 CM not reported female other -25197 C3N-03415 UCEC not reported female not reported -31332 C3N-03417 UCEC not reported female not reported -24766 C3N-03420 LUAD not reported female not reported -24141 @@ -1489,6 +1599,7 @@ C3N-03453 GBM not reported female not reported -19695 C3N-03456 HNSCC not reported male not reported -23616 C3N-03457 HNSCC not reported male not reported -26052 C3N-03458 HNSCC not reported male not reported -25648 +C3N-03460 CM not reported female other -24349 C3N-03473 GBM not reported female not reported -11053 C3N-03480 GBM not reported male not reported -21926 C3N-03484 GBM not reported female not reported -27570 @@ -1497,6 +1608,8 @@ C3N-03487 HNSCC not reported female not reported -19702 C3N-03488 HNSCC not reported male not reported -23634 C3N-03490 HNSCC not reported male not reported -23729 C3N-03612 HNSCC not reported male not reported -18832 +C3N-03614 CM not reported male other -27854 +C3N-03617 CM not reported male other -26863 C3N-03619 HNSCC not reported male not reported -21757 C3N-03620 HNSCC not reported male not reported -22641 C3N-03662 LSCC not reported male not reported -23732 @@ -1541,11 +1654,15 @@ C3N-03878 HNSCC not reported male not reported -19338 C3N-03880 LSCC not reported male not reported -27786 C3N-03882 LSCC not reported male not reported -25174 C3N-03884 PDA not reported female not reported -23590 +C3N-03885 CM not reported male other -11945 C3N-03886 LSCC not reported male not reported -22042 C3N-03888 HNSCC not reported male not reported -21474 C3N-03889 HNSCC not reported male not reported -19505 C3N-03890 LUAD not reported female not reported -23096 C3N-03911 LUAD not reported female not reported -25935 +C3N-03913 CM not reported female other -16533 +C3N-03916 CM not reported male other -27214 +C3N-03918 CM not reported female other -29353 C3N-03921 LUAD not reported female not reported -26682 C3N-03923 LSCC not reported male not reported -23899 C3N-03928 HNSCC not reported female not reported -22113 @@ -1565,10 +1682,12 @@ C3N-04125 LSCC not reported male not reported -23863 C3N-04126 PDA not reported male not reported -15708 C3N-04127 LSCC not reported male not reported -23148 C3N-04138 LSCC not reported male not reported -27997 +C3N-04142 CM not reported female other -29614 C3N-04151 HNSCC not reported male not reported -17021 C3N-04152 HNSCC not reported male not reported -19705 C3N-04153 HNSCC not reported female not reported -17000 C3N-04155 LSCC not reported male not reported -28060 +C3N-04156 CM not reported male other -17362 C3N-04157 LUAD not reported male not reported -22497 C3N-04162 LSCC not reported male not reported -17099 C3N-04167 LSCC not reported male not reported -24514 @@ -1588,6 +1707,8 @@ C3N-04282 PDA not reported male not reported -27699 C3N-04283 PDA not reported female not reported -24187 C3N-04284 PDA not reported female not reported -29323 C3N-04288 HNSCC not reported male not reported -15540 +C3N-04293 CM not reported male white -27654 +C3N-04294 CM not reported male white -23388 C3N-04312 GBM not reported female not reported null C3N-04382 LUAD not hispanic or latino female white -17484 C3N-04384 LSCC not reported male not reported -22098 @@ -1624,8 +1745,14 @@ C3N-05097 HNSCC not reported female not reported -25034 C3N-05098 HNSCC not reported male not reported -23243 C3N-05099 HNSCC not reported male not reported -26333 C3N-05100 LSCC not reported female not reported -22209 +C3N-05101 CM not reported female white -28084 +C3N-05106 CM not reported female white null +C3N-05107 CM not reported male white -21598 +C3N-05108 CM not reported male white -26980 C3N-05114 GBM not reported female not reported -24283 C3N-05135 GBM not reported male not reported -11750 +C3N-05623 CM not reported male white -20821 +C3N-05624 CM not reported male white -26328 C3N-05629 LSCC not reported male not reported -22763 C3N-05911 LSCC not reported male not reported null C3N-05914 LSCC not reported female not reported -25700 diff --git a/Catalog3/CPTAC3.Catalog3.tsv b/Catalog3/CPTAC3.Catalog3.tsv index 5cbdbc9..fadef31 100644 --- a/Catalog3/CPTAC3.Catalog3.tsv +++ b/Catalog3/CPTAC3.Catalog3.tsv @@ -1486,8 +1486,8 @@ C3L-00094.WXS.N C3L-00094 LUAD WXS blood_normal CPT0003900002 CPT0003900002.Whol C3L-00094.WXS.N.hg38 C3L-00094 LUAD WXS blood_normal CPT0003900002 ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 39049896925 BAM harmonized CPTAC3 328bd359-d972-4bbc-9fc7-541d883db07d 44d519fd30898915b33eab5686535926 {"aliquot_tag": "ALQ_e02e75b4", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-00094.WXS.T C3L-00094 LUAD WXS tumor CPT0000920005 CPT0000920005.WholeExome.RP-1303.bam 33346843527 BAM submitted_aligned CPTAC3 7e42e5ac-ad12-4448-93f0-f20886330c14 db544ea830b6415d3ffeef608a12de2c {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00094.WXS.T.hg38 C3L-00094 LUAD WXS tumor CPT0000920005 f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 45847939308 BAM harmonized CPTAC3 3f162dd1-53ca-4295-ad07-cd7a796d8d3d 687180fb35d9cb9a1a9c21ea1c16d4a4 {"aliquot_tag": "ALQ_3562a9ea", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00095.DUP_85a21550.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM submitted_aligned CPTAC3 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3L-00095.DUP_85a21550.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM harmonized CPTAC3 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00095.DUP_85a21550.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM submitted_aligned CPTAC3 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-00095.DUP_85a21550.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM harmonized CPTAC3 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 {"aliquot_tag": "DUP_85a21550", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-00095.MethArray.Green.A C3L-00095 LUAD Methylation_Array tissue_normal CPT0001690009 203027390073_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4f198590-798f-4499-95c8-c45fccd0a879 ffce288a3d37a981972557f097e4bdfc {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-00095.MethArray.Green.T C3L-00095 LUAD Methylation_Array tumor CPT0001660005 201557540007_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 d3890b3d-a816-4613-ad1f-0c270067e7bd f2ce7466c0e6dde209b3e11f3a4ed345 {"aliquot_tag": "ALQ_97c3b64b", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00095.MethArray.Red.A C3L-00095 LUAD Methylation_Array tissue_normal CPT0001690009 203027390073_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6a9689b1-9866-4771-93c7-05618d8714db 1439bc006cca0047ed73cdd2a74f94da {"aliquot_tag": "ALQ_1c256db1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -4403,12 +4403,12 @@ C3L-00908.REP_9f5a3438.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0 C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R1.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R1_001.fastq.gz 4497335523 FASTQ S25_L007_R1 submitted_unaligned CPTAC3 7b04f1ce-15c3-43d2-9286-7a6d1f15e302 c0eb97ce345891af6daf78e0298b2701 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.REP_9f5a3438.RNA-Seq.S25_L007_R2.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R2_001.fastq.gz 4812306259 FASTQ S25_L007_R2 submitted_unaligned CPTAC3 4ba00e47-13e7-4f56-b8c4-77d73ba76363 13c2d5dd46289aeb707903a147444417 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "sample": "S25", "lane": "L007", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.REP_9f5a3438.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.transcriptome.gdc_realn.bam 13467018138 BAM transcriptome harmonized CPTAC3 a45675b4-d9dd-434e-bf60-1f1ba99bb365 0ef4e483876a03dc88f363f98b2ed0a0 {"aliquot_tag": "REP_9f5a3438", "aliquot_annotation": "Duplicate item: Replacement RNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM submitted_aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM submitted_aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation_Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM submitted_aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM submitted_aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} +C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f {"aliquot_tag": "REP_fe529a9", "aliquot_annotation": "Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.RNA-Seq.chimeric.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.chimeric.gdc_realn.bam 81729999 BAM chimeric harmonized CPTAC3 15e54e5d-8151-45de-bedf-5c5b377f8cd1 2dbd687ffb1b37045ce45d0aaac7a94a {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-00908.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.chimeric.gdc_realn.bam 41299237 BAM chimeric harmonized CPTAC3 27290952-fff8-42ed-a3aa-1876caa8dd40 0fde308c07c0790ad4c285ac0f4451ba {"aliquot_tag": "ALQ_48455379", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-00908.RNA-Seq.genomic.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.genomic.gdc_realn.bam 6920830541 BAM genomic harmonized CPTAC3 1358f298-f323-4428-ab6c-4c9c0d1a1c36 e8aebf888d077c9b4dc6a3e6aca0e56b {"aliquot_tag": "ALQ_75257ac9", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -10502,8 +10502,8 @@ C3L-02364.WXS.N C3L-02364 CCRCC WXS blood_normal CPT0115270002 CPT0115270002.Who C3L-02364.WXS.N.hg38 C3L-02364 CCRCC WXS blood_normal CPT0115270002 be8f1237-9410-41ce-b51f-f44bf6373a98_wxs_gdc_realn.bam 29379243534 BAM harmonized CPTAC3 afe5004f-2697-474a-b81e-f7987f7cd071 df581dc806287680128fb637eb526d05 {"aliquot_tag": "ALQ_80c87880", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3L-02364.WXS.T C3L-02364 CCRCC WXS tumor CPT0113260009 CPT0113260009.WholeExome.RP-1303.bam 19066566800 BAM submitted_aligned CPTAC3 f95b60c0-6401-4e3a-9e3c-60ebbcc31cb2 0407b9f6d24dafaca6cb148598c7b6ed {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02364.WXS.T.hg38 C3L-02364 CCRCC WXS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wxs_gdc_realn.bam 26340453776 BAM harmonized CPTAC3 6aeae5c1-1438-4c81-b877-3fbc09c1a6da d627ccc95502c3d0f3077004127fe0e2 {"aliquot_tag": "ALQ_49aabd82", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM submitted_aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM submitted_aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae {"aliquot_tag": "DUP_6a761e9e", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-02365.MethArray.Green.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c3593b4-6c5b-4da1-8084-a9d4dcce816f ee342bb20ebe602c5992e30e21836621 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3L-02365.MethArray.Green.T C3L-02365 LUAD Methylation_Array tumor CPT0114840009 202234370079_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6a029c9-907e-42bf-b35e-9327945ee385 6d7a82e273411bf0ba42c3138f6a6622 {"aliquot_tag": "ALQ_5756f30a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3L-02365.MethArray.Red.A C3L-02365 LUAD Methylation_Array tissue_normal CPT0114880006 203028200014_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f777f75b-bbe5-44de-89d5-a303cd6b132c 32dbb653f900c4616e3f3646541972e7 {"aliquot_tag": "ALQ_219039a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -19498,7 +19498,9 @@ C3L-06912.RNA-Seq.S2_L006_R1.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_ C3L-06912.RNA-Seq.S2_L006_R2.T C3L-06912 LGG RNA-Seq tumor CPT0388940008 220603_UNC32-K00270_0322_BHNKFLBBXY_ATGTAAGT-ACTCTATG_S2_L006_R2_001.fastq.gz 4045804806 FASTQ S2_L006_R2 submitted_unaligned CPTAC3 9ff596fa-a71c-47cb-8547-114e3ba9da05 42a0d1c88599d3a9538397a067738f51 {"aliquot_tag": "ALQ_1d1449e0", "sample": "S2", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3L-06912.RNA-Seq.transcriptome.T.hg38 C3L-06912 LGG RNA-Seq tumor CPT0388940008 46737a37-49e8-4320-92b7-16793c54fb92.rna_seq.transcriptome.gdc_realn.bam 9751797948 BAM transcriptome harmonized CPTAC3 6f2e382a-3c4b-406d-94de-b68d644ad85d 60e18a03fd979d9b24a3dda6f0d71162 {"aliquot_tag": "ALQ_1d1449e0", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3L-06912.WGS.N C3L-06912 LGG WGS blood_normal CPT0389050005 CPT0389050005.WholeGenome.RP-2158.bam 70563558355 BAM submitted_aligned CPTAC3 767274c6-e610-4a1b-9899-1647d13939b4 d90469b36a7b9e3626ed3f96357b44bb {"aliquot_tag": "ALQ_dfbd4691", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3L-06912.WGS.N.hg38 C3L-06912 LGG WGS blood_normal CPT0389050005 b61c8ac3-5e86-4b02-a3aa-e97d6b726278_wgs_gdc_realn.bam 208686775527 BAM harmonized CPTAC3 d460cddb-a3c7-4d98-81d7-b8ba85d26d9f 71aff830a35e54295f5234eff72d4f0f {"aliquot_tag": "ALQ_dfbd4691", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3L-06912.WGS.T C3L-06912 LGG WGS tumor CPT0388940011 CPT0388940011.WholeGenome.RP-2158.bam 129779104068 BAM submitted_aligned CPTAC3 b6f271ab-8986-4465-a214-f06c7e3b3d37 47ba8b844ec46eb1b3c81ca285afc00f {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3L-06912.WGS.T.hg38 C3L-06912 LGG WGS tumor CPT0388940011 cd25fa75-5b4a-422b-93b9-7e1c7c7c36af_wgs_gdc_realn.bam 389435165923 BAM harmonized CPTAC3 89e198c5-0392-47c0-943f-4f4a95fa8275 b584aa63fb506398d82b2148028ae839 {"aliquot_tag": "ALQ_7dd3c005", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation_Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 {"aliquot_tag": "ALQ_ef18eeb9", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} C3L-06951.miRNA-Seq.S24_L005_R1.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM S24_L005_R1 submitted_unaligned CPTAC3 b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca {"aliquot_tag": "ALQ_698c9c17", "sample": "S24", "lane": "L005", "read": "R1", "gdc_sample_type": "Primary Blood Derived Cancer - Bone Marrow", "state": "submitted"} @@ -20603,8 +20605,8 @@ C3N-00211.WXS.N C3N-00211 LSCC WXS blood_normal CPT0092490002 CPT0092490002.Whol C3N-00211.WXS.N.hg38 C3N-00211 LSCC WXS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wxs_gdc_realn.bam 53607358989 BAM harmonized CPTAC3 7f5f833c-d120-4318-97b6-8988f74e29e3 4ba755af92e1000478c0ee471c45888f {"aliquot_tag": "ALQ_e8981484", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-00211.WXS.T C3N-00211 LSCC WXS tumor CPT0090440009 CPT0090440009.WholeExome.RP-1303.bam 38073808710 BAM submitted_aligned CPTAC3 e23a0176-239f-4d2d-9daf-2a54a46b21c3 f0016248a78001fe8af8543250f24efa {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00211.WXS.T.hg38 C3N-00211 LSCC WXS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wxs_gdc_realn.bam 51587274152 BAM harmonized CPTAC3 5475774a-cfde-4aa3-8cd1-85fda9e6260f bdd0bf8c3a979f119c6e555130ee3135 {"aliquot_tag": "ALQ_10451894", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM submitted_aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM submitted_aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da {"aliquot_tag": "DUP_f8438300", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-00217.MethArray.Green.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73731e5f-72f0-4b4c-b2b3-a799ffe23fdb c6620ec6eefba1771976d282b5190b0e {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-00217.MethArray.Green.T C3N-00217 LUAD Methylation_Array tumor CPT0090570010 202234360025_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79a982ef-e333-401b-8314-c23d667f1a40 36b5453c0b6395390b2bfa4205a5213b {"aliquot_tag": "ALQ_fc7e3804", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-00217.MethArray.Red.A C3N-00217 LUAD Methylation_Array tissue_normal CPT0090600009 203027390113_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cf25d240-6ed7-44cc-afa5-d802b41507ac 6c30c58c65c3c519eb1ce6743337e030 {"aliquot_tag": "ALQ_a80d1f5f", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -25107,9 +25109,7 @@ C3N-01079.WXS.N.hg38 C3N-01079 UCEC WXS blood_normal CPT0211240002 58064c6a-c59b C3N-01079.WXS.T C3N-01079 UCEC WXS tumor CPT0211120007 CPT0211120007.WholeExome.RP-1303.bam 23292018621 BAM submitted_aligned CPTAC3 6deaf1ce-6405-47e4-9967-cda4828ab11b a2e9339384b45ab1efe21acb3318ed1a {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01079.WXS.T.hg38 C3N-01079 UCEC WXS tumor CPT0211120007 a3f29d2f-de87-476b-8788-1a437ec61237_wxs_gdc_realn.bam 32289014569 BAM harmonized CPTAC3 8e90126a-f7b3-4e3c-be03-9bc5649de5d4 da1ffdb7c7837a94dfffc206405e3064 {"aliquot_tag": "ALQ_73146907", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01080.MethArray.Green.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 f524b12a-703c-4bbb-852c-4388a7988fc1 01e9ebee992df49b3e3308cfb01d96c7 {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} -C3N-01080.MethArray.Green.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 500f1bc6-cd94-405b-9414-b70e60484a08 969425da800e3183fd0f01f8a73f47dd {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01080.MethArray.Red.A C3N-01080 CCRCC Methylation_Array tissue_normal CPT0211340006 204930630081_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 1234a8af-5e29-4859-ad25-0f53b753ac0d 036d93ef8e5b5f93eb30772086e125ff {"aliquot_tag": "ALQ_c69b0d3a", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} -C3N-01080.MethArray.Red.T C3N-01080 CCRCC Methylation_Array tumor CPT0211320006 203219640095_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 9b1a2bb1-8cee-49a7-8931-8a2fbb8eb6f5 83c25f2997d008337ee6ad449c7238c9 {"aliquot_tag": "ALQ_49dbf89a", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM harmonized CPTAC3 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 {"aliquot_tag": "ALQ_562410ab", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01080.miRNA-Seq.S12_L003_R1.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L003_R1_001.unaln.bam 152442457 BAM S12_L003_R1 submitted_unaligned CPTAC3 d0947c5c-0531-4424-b590-6f3788393d77 b4a2508cb9f338ef87175ea1ce555404 {"aliquot_tag": "ALQ_562410ab", "sample": "S12", "lane": "L003", "read": "R1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01080.miRNA-Seq.S1_L001_R1.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM S1_L001_R1 submitted_unaligned CPTAC3 b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f {"aliquot_tag": "ALQ_d964e50b", "sample": "S1", "lane": "L001", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -25768,7 +25768,9 @@ C3N-01199.RNA-Seq.genomic.T.hg38 C3N-01199 GBM RNA-Seq tumor CPT0457680008 0e56f C3N-01199.RNA-Seq.S4_L006_R1.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R1_001.fastq.gz 5000286535 FASTQ S4_L006_R1 submitted_unaligned CPTAC3 742a45a1-2eb8-44d5-912e-8747b99a93d4 2153ef9bd3c1d42588e4749539a8fdbf {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01199.RNA-Seq.S4_L006_R2.T C3N-01199 GBM RNA-Seq tumor CPT0457680008 220603_UNC32-K00270_0322_BHNKFLBBXY_GGTACCTT-AAGACGTC_S4_L006_R2_001.fastq.gz 5203845866 FASTQ S4_L006_R2 submitted_unaligned CPTAC3 d457808c-dc8e-4904-9c85-9a6c5fff4b0a 02bce17f1695973dd385d8cea6689575 {"aliquot_tag": "ALQ_209e1ec5", "sample": "S4", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-01199.WGS.N C3N-01199 GBM WGS blood_normal CPT0402850001 CPT0402850001.WholeGenome.RP-2158.bam 60409941422 BAM submitted_aligned CPTAC3 9ac6dbcf-a44d-4871-bc05-54e7ad5b79da bd52da88c8c74ad14e85d9a240018fc4 {"aliquot_tag": "ALQ_81002263", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-01199.WGS.N.hg38 C3N-01199 GBM WGS blood_normal CPT0402850001 84eaa6ad-f7de-4eef-9f8e-e719fcaa5637_wgs_gdc_realn.bam 178510631390 BAM harmonized CPTAC3 357f6190-0ba1-44b2-923a-22b5e92db560 3fbd2d316ab90c3a57aa9806cd3faebb {"aliquot_tag": "ALQ_81002263", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3N-01199.WGS.T C3N-01199 GBM WGS tumor CPT0457680011 CPT0457680011.WholeGenome.RP-2158.bam 115148443436 BAM submitted_aligned CPTAC3 ff7d7777-36ac-47c6-8c34-7a0fa07b17c8 62b873808eccd22e0b3272f8473fdc60 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01199.WGS.T.hg38 C3N-01199 GBM WGS tumor CPT0457680011 ddf0920c-fcc6-4fc9-b037-fe9b2f03e6b7_wgs_gdc_realn.bam 342839849683 BAM harmonized CPTAC3 c1549374-44d6-4bce-81e5-800c3becf057 baaf604ba808cae74d21642be7c00589 {"aliquot_tag": "ALQ_40599720", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-01200.DUP_3a5a9d02.miRNA-Seq.S26_L002_R1.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L002_R1_001.unaln.bam 241941968 BAM S26_L002_R1 submitted_unaligned CPTAC3 61f7977f-8b97-47aa-b0bb-192d3ec71e0b 240422199a8feb2dc4a5680bee449dc1 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "sample": "S26", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01200.DUP_3a5a9d02.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 daec41c7-dc35-4bee-bb66-94e95108d429_mirnaseq_gdc_realn.bam 268769840 BAM harmonized CPTAC3 8feda69f-b67c-4209-b8b8-9d2df3df00ca d37a9dfd293460ee9f9e09c7085d41dd {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01200.DUP_3a5a9d02.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.chimeric.gdc_realn.bam 70328673 BAM chimeric harmonized CPTAC3 57af4e09-abf7-4d40-93dc-49108577f9dd e1211762a0a1130cd82aae4e2e03a074 {"aliquot_tag": "DUP_3a5a9d02", "aliquot_annotation": "Duplicate item: CCRCC Tumor heterogeneity study aliquot", "gdc_sample_type": "Primary Tumor", "state": "released"} @@ -28647,8 +28649,8 @@ C3N-01818.WXS.N C3N-01818 GBM WXS blood_normal CPT0168320002 CPT0168320002.Whole C3N-01818.WXS.N.hg38 C3N-01818 GBM WXS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wxs_gdc_realn.bam 48343240872 BAM harmonized CPTAC3 f233f5da-c7e9-45e8-9c93-bd18b618d4b9 24627a93091899749976428980e36982 {"aliquot_tag": "ALQ_e8664c8c", "gdc_sample_type": "Blood Derived Normal", "state": "released"} C3N-01818.WXS.T C3N-01818 GBM WXS tumor CPT0168270006 CPT0168270006.WholeExome.RP-1303.bam 31671952321 BAM submitted_aligned CPTAC3 f14f1716-e463-4ca3-99ec-e3f2bef9c83f c6023b74eefda700bb08b3426a254c7e {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01818.WXS.T.hg38 C3N-01818 GBM WXS tumor CPT0168270006 f9340864-be80-405e-a3a3-e0b123762976_wxs_gdc_realn.bam 42399077248 BAM harmonized CPTAC3 4da3c9fd-7357-4d0f-8d0c-10c9e67f06fc 1418d6dc5ebae3cb6f766ad5ea26e1a9 {"aliquot_tag": "ALQ_ecb7d440", "gdc_sample_type": "Primary Tumor", "state": "released"} -C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM submitted_aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} -C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM submitted_aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 {"aliquot_tag": "DUP_dd07c2ca", "aliquot_annotation": "Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-01823.MethArray.Green.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 509ee701-0c21-43df-91ae-639f9ac26949 83f25435b7efbfe27f65bc68ce1add51 {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} C3N-01823.MethArray.Green.T C3N-01823 LUAD Methylation_Array tumor CPT0097580009 202234380099_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9d223e8-ecf4-4224-ada9-b997b22d90cd eafe63ef2855149f2a321b787bcec04a {"aliquot_tag": "ALQ_db4e18be", "gdc_sample_type": "Primary Tumor", "state": "released"} C3N-01823.MethArray.Red.A C3N-01823 LUAD Methylation_Array tissue_normal CPT0097600009 203027390113_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1d79c083-5d16-4660-8b42-091f086f9305 a0a890e789eed03f20b940d6e9ac679c {"aliquot_tag": "ALQ_6daa21d1", "gdc_sample_type": "Solid Tissue Normal", "state": "released"} @@ -37642,7 +37644,9 @@ C3N-03788.RNA-Seq.S1_L006_R1.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_ C3N-03788.RNA-Seq.S1_L006_R2.T C3N-03788 GBM RNA-Seq tumor CPT0457770008 220603_UNC32-K00270_0322_BHNKFLBBXY_AACGTTCC-GGAGTACT_S1_L006_R2_001.fastq.gz 3808720166 FASTQ S1_L006_R2 submitted_unaligned CPTAC3 8ea7fb5a-7ab8-4ce4-bf91-abeb62546d76 29397817e7be40c6146805e5c326309c {"aliquot_tag": "ALQ_69925ab1", "sample": "S1", "lane": "L006", "read": "R2", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03788.RNA-Seq.transcriptome.T.hg38 C3N-03788 GBM RNA-Seq tumor CPT0457770008 11998f08-1056-4823-8d79-c145fdf911c9.rna_seq.transcriptome.gdc_realn.bam 7571693638 BAM transcriptome harmonized CPTAC3 48973af3-bff5-47d4-932a-af8466b1a338 f6e0095a589476561d2c936afecbc28e {"aliquot_tag": "ALQ_69925ab1", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-03788.WGS.N C3N-03788 GBM WGS blood_normal CPT0457870001 CPT0457870001.WholeGenome.RP-2158.bam 62556087199 BAM submitted_aligned CPTAC3 29306a95-3819-46f2-8462-a99e2addd672 5c283d67b8d7157c2d0e37de16aca6c1 {"aliquot_tag": "ALQ_e11850c0", "gdc_sample_type": "Blood Derived Normal", "state": "submitted"} +C3N-03788.WGS.N.hg38 C3N-03788 GBM WGS blood_normal CPT0457870001 6b7aebd8-b57b-4532-b65d-586e24b04040_wgs_gdc_realn.bam 183914747518 BAM harmonized CPTAC3 95cd212c-7310-4040-8f11-a7421fcf517a df39e513b40473609247d99a2cf19c2c {"aliquot_tag": "ALQ_e11850c0", "gdc_sample_type": "Blood Derived Normal", "state": "validated"} C3N-03788.WGS.T C3N-03788 GBM WGS tumor CPT0457770011 CPT0457770011.WholeGenome.RP-2158.bam 120084054423 BAM submitted_aligned CPTAC3 112eecb3-e804-41e8-be96-3ad019bc58ec 64ff6971acadb7ec90b0b85f26b13ea4 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "submitted"} +C3N-03788.WGS.T.hg38 C3N-03788 GBM WGS tumor CPT0457770011 e3011e82-87e8-42bf-a3e4-9d495a3a70fa_wgs_gdc_realn.bam 356273644509 BAM harmonized CPTAC3 1464deeb-bdb2-4877-b6a3-cc37685302de ec6f3aa3e751572d22977d399b0ba8b3 {"aliquot_tag": "ALQ_955d354", "gdc_sample_type": "Primary Tumor", "state": "validated"} C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation_Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation_Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 {"aliquot_tag": "ALQ_cc448f5a", "gdc_sample_type": "Primary Tumor", "state": "submitted"} C3N-03789.miRNA-Seq.S27_L002_R1.T C3N-03789 GBM miRNA-Seq tumor CPT0244860009 200403_UNC31-K00269_0274_AHCF7GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 225451718 BAM S27_L002_R1 submitted_unaligned CPTAC3 b660df27-cdb3-4bb7-960c-cd23e8296233 ff52890e8305588e649255f692288db9 {"aliquot_tag": "ALQ_5cfb92cb", "sample": "S27", "lane": "L002", "read": "R1", "gdc_sample_type": "Primary Tumor", "state": "submitted"}