diff --git a/CPTAC3.Catalog.Summary.dat b/CPTAC3.Catalog.Summary.dat index 0e1f55b..2a11422 100644 --- a/CPTAC3.Catalog.Summary.dat +++ b/CPTAC3.Catalog.Summary.dat @@ -380,7 +380,7 @@ C3L-01035 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-01036 PDA WGS.hg19 T N A WXS.hg19 TT N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA C3L-01037 PDA WGS.hg19 T N WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA C3L-01038 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-01039 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-01039 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-01040 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-01042 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-01043 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -1053,7 +1053,7 @@ C3L-02884 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-02885 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-02886 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-02887 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-02888 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-02888 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-02889 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-02890 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-02891 LSCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA @@ -1069,7 +1069,7 @@ C3L-02952 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-02953 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-02954 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3L-02955 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3L-02956 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-02956 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-02957 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3L-02958 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3L-02959 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -1153,7 +1153,7 @@ C3L-03288 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-03308 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03309 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03347 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-03348 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-03348 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-03349 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03350 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-03351 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -1257,14 +1257,14 @@ C3L-03595 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-03596 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03597 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03621 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-03622 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-03622 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-03623 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03624 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT C3L-03625 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03626 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03627 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03628 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3L-03629 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-03629 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-03630 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-03631 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03632 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -1312,7 +1312,7 @@ C3L-03729 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-03730 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03731 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03732 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-03733 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-03733 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-03735 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-03736 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03737 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -1406,7 +1406,7 @@ C3L-04081 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-04082 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-04083 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-04084 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3L-04085 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-04085 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-04086 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04089 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04090 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -1482,7 +1482,7 @@ C3L-04378 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA. C3L-04379 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3L-04380 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04391 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3L-04392 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-04392 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-04401 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04402 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA C3L-04404 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA @@ -1766,7 +1766,7 @@ C3L-05229 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq W C3L-05230 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05231 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05232 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-05239 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-05239 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3L-05240 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05241 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05256 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -2436,7 +2436,7 @@ C3N-01381 PDA WGS.hg19 T N WXS.hg19 TT N RNA.fq TT miRNA.fq C3N-01382 PDA WGS.hg19 T N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-01383 PDA WGS.hg19 T N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-01384 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-01385 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-01385 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-01386 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01387 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01388 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -2634,8 +2634,8 @@ C3N-01894 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-01895 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01896 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01897 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT -C3N-01898 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-01899 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-01898 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray +C3N-01899 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-01900 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-01901 CCRCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-01902 CCRCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT @@ -2914,7 +2914,7 @@ C3N-02590 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq C3N-02591 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT C3N-02592 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02593 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-02594 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-02594 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-02595 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02596 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02597 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -2954,7 +2954,7 @@ C3N-02692 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-02693 HNSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02694 HNSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02695 HNSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3N-02696 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-02696 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-02697 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02698 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02699 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -2982,7 +2982,7 @@ C3N-02730 HNSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq C3N-02751 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02752 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02753 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-02754 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-02754 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-02755 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02757 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-02758 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA @@ -2990,7 +2990,7 @@ C3N-02759 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-02761 CCRCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02763 CCRCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02764 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3N-02765 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-02765 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-02767 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02768 PDA WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-02769 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -3046,7 +3046,7 @@ C3N-02926 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA. C3N-02927 CCRCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02928 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-02929 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3N-02930 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-02930 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-02931 CCRCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02932 CCRCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02933 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3081,7 +3081,7 @@ C3N-02992 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-02993 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-02994 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02995 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-02996 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-02996 PDA WGS.hg19 WXS.hg19 RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-02997 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02998 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-02999 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3339,10 +3339,10 @@ C3N-03788 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-03789 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03790 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03791 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3N-03792 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-03792 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-03793 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03794 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-03796 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-03796 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-03797 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03800 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03802 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray @@ -3425,7 +3425,7 @@ C3N-04121 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04122 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04123 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04124 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3N-04125 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04125 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04126 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-04127 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-04128 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3434,7 +3434,7 @@ C3N-04132 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04133 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04134 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04135 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04138 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04138 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04139 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04140 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04141 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3510,7 +3510,7 @@ C3N-04325 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04330 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04382 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-04383 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04384 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04384 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04385 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04386 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04387 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3520,11 +3520,11 @@ C3N-04441 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04442 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04443 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04444 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04445 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04445 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04446 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04447 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04448 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04449 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04449 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04450 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04451 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04452 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3558,12 +3558,12 @@ C3N-04655 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04656 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04658 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04659 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04660 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04660 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04661 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04662 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04662 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04663 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04664 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04665 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04665 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04666 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04667 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04668 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3578,7 +3578,7 @@ C3N-04676 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04683 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-04684 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04686 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3N-04687 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04687 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-04688 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04689 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04690 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3586,7 +3586,7 @@ C3N-04691 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T C3N-04692 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04693 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-04694 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04695 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04695 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-04696 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04697 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04698 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3613,7 +3613,7 @@ C3N-04910 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04941 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04942 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04943 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04944 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04944 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04945 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04946 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04947 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3621,7 +3621,7 @@ C3N-04948 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04949 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04950 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04981 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04982 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04982 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-04983 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04984 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04985 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3634,7 +3634,7 @@ C3N-04991 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04992 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05037 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05038 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05039 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05039 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-05040 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05061 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05062 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3652,7 +3652,7 @@ C3N-05079 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA. C3N-05080 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-05082 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05083 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05085 TBD WGS.hg19 WXS.hg19 RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05085 TBD WGS.hg19 WXS.hg19 RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-05096 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05097 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05098 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3661,7 +3661,7 @@ C3N-05100 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq C3N-05111 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05112 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05113 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05114 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05114 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-05115 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05117 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05118 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3671,7 +3671,7 @@ C3N-05131 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq W C3N-05132 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05133 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05134 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05135 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05135 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 TTT miRNA.hg38 MethArray C3N-05136 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05137 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05138 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3698,7 +3698,7 @@ C3N-05624 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-05627 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05629 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-05630 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05911 TBD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05911 TBD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 TTT AAA miRNA.hg38 MethArray C3N-05912 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05913 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05914 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA @@ -3714,7 +3714,7 @@ C3N-33333 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-44444 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray PT-NPJ7 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray PT-P44H GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-Q2AG GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +PT-Q2AG GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 MethArray PT-QVJO GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray PT-R55F GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray PT-RN5K GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index cccd197..6e57692 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -4741,8 +4741,11 @@ C3L-01037.WXS.N C3L-01037 PDA WXS blood_normal CPT0167230002 CPT0167230002.Whole C3L-01037.WXS.N.hg38 C3L-01037 PDA WXS blood_normal CPT0167230002 52ceffda-2a7b-4682-a7fe-3adfa2a3c703_wxs_gdc_realn.bam 38308740048 BAM NA d226760d-70d7-48be-a71f-14e4d5b6b65d 02008cfb97a45624a013a7f108af84bd hg38 Blood Derived Normal C3L-01037-31 C3L-01037.WXS.T.hg38.high_cov C3L-01037 PDA WXS tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_wxs_gdc_realn.bam 64811583822 BAM NA e9428ff1-b9b0-4d71-bac4-ad733aa7dab8 63f5435ff5f94ccd72454e2816c46b07 hg38 Primary Tumor C3L-01037-01 .high_cov C3L-01037.WXS.T.high_cov C3L-01037 PDA WXS tumor CPT0170240007 CPT0170240007.WholeExome.RP-1303.bam 46916744201 BAM NA 887b4768-2410-4457-9d7d-a5c5ea3348f1 d56f5ab857cc0437a879896439b68b45 hg19 Primary Tumor C3L-01037-01 .high_cov +C3L-01039.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.chimeric.gdc_realn.bam 207289167 BAM chimeric 847419de-88be-41b6-8471-750fec749537 be08dca09f4da398e5055fbebb74a640 hg38 Primary Tumor C3L-01039-03 +C3L-01039.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.genomic.gdc_realn.bam 9396708284 BAM genomic f93f723e-4b61-4498-a8d7-22c46f370613 609d44dcd2c7f2f2b9650d566b2dd879 hg38 Primary Tumor C3L-01039-03 C3L-01039.RNA-Seq.R1.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R1_001.fastq.gz 3261916364 FASTQ NA 42a2998d-a333-4029-a3bb-140902ba6638 90fa6a68d5808cfb203a1c6e33c3b649 NA Primary Tumor C3L-01039-03 C3L-01039.RNA-Seq.R2.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R2_001.fastq.gz 3658194729 FASTQ NA 98741507-9f87-456c-8803-a2e4472b65e0 fc3204195784878fa93c30866a2d96f5 NA Primary Tumor C3L-01039-03 +C3L-01039.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.transcriptome.gdc_realn.bam 6135509850 BAM transcriptome 08cab5d1-6409-4279-9650-951af51b0f4f 62c1386ad2f4db6cf93888543d5d11d3 hg38 Primary Tumor C3L-01039-03 C3L-01040.MethArray.Green.T C3L-01040 GBM Methylation Array tumor CPT0171580011 203027390028_R06C01_Grn.idat 13676231 IDAT Green 7561727f-2db5-4d54-9e80-3dbec1e10bd6 38257262072b97dc7e7eae8db1206955 NA Primary Tumor C3L-01040-02,C3L-01040-03 C3L-01040.MethArray.Red.T C3L-01040 GBM Methylation Array tumor CPT0171580011 203027390028_R06C01_Red.idat 13676231 IDAT Red ff017231-75df-49ff-a006-59a6d68b665d b6e358cfd565bc881e7c3e9f03e38ad9 NA Primary Tumor C3L-01040-02,C3L-01040-03 C3L-01040.miRNA-Seq.T C3L-01040 GBM miRNA-Seq tumor CPT0171580014 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 276089687 BAM NA 81cef73b-464c-4fda-ba9f-d4300b045a3b 1014fa18be9388a12bcdc0f8b8503cd1 NA Primary Tumor C3L-01040-02,C3L-01040-03 @@ -10974,8 +10977,11 @@ C3L-02857.WXS.T C3L-02857 CCRCC WXS tumor CPT0203410006 CPT0203410006.WholeExome C3L-02857.WXS.T.hg38 C3L-02857 CCRCC WXS tumor CPT0203410006 fffbf591-33c9-45e6-868a-9b7ec881d315_wxs_gdc_realn.bam 41745966797 BAM NA 91d96a04-c7f3-4a2c-bfed-41e8e2b86436 d5fdd96c1542f4c574fc51ebd014e821 hg38 Primary Tumor C3L-02857-01 C3L-02858.miRNA-Seq.T C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTTTCG_S19_L001_R1_001.unaln.bam 270092493 BAM NA ac3ceeed-a6a1-4c9a-b151-1e15a30cb131 593e3d2d59658c716fc536b1e8df0024 NA Primary Tumor C3L-02858-01 C3L-02860.miRNA-Seq.T C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGTACG_S10_L001_R1_001.unaln.bam 279894472 BAM NA a72a43f7-7df8-4d68-a365-91fd5bc909ba 1e5fa80fa870022132797edca109358b NA Primary Tumor C3L-02860-01 +C3L-02888.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 4b4ff8c9-caaf-47d3-984c-eb2d57478a09.rna_seq.chimeric.gdc_realn.bam 337369094 BAM chimeric 3a517d72-986e-4d36-89cf-000792e7810f f3738938e4191f1bc913540f83a492a3 hg38 Primary Tumor C3L-02888-02 +C3L-02888.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 4b4ff8c9-caaf-47d3-984c-eb2d57478a09.rna_seq.genomic.gdc_realn.bam 10606094332 BAM genomic 80e342d2-43e2-4bca-83e0-7fc3a86fb73d 3df9ff2f13f6ffcd4c11b20b8e55d0bb hg38 Primary Tumor C3L-02888-02 C3L-02888.RNA-Seq.R1.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R1_001.fastq.gz 4650540759 FASTQ NA 393f7304-aade-4eca-bc5e-dcb06cb2346b 988ceba63796afefb5afb6d8ea608fff NA Primary Tumor C3L-02888-02 C3L-02888.RNA-Seq.R2.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R2_001.fastq.gz 5329470624 FASTQ NA b9b96461-e577-485d-b368-8f0ed1e4131b e6ce1fb6dab37e603a39e4090e1fd87e NA Primary Tumor C3L-02888-02 +C3L-02888.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 4b4ff8c9-caaf-47d3-984c-eb2d57478a09.rna_seq.transcriptome.gdc_realn.bam 13207848317 BAM transcriptome d86157ed-47cf-436f-8654-013d41ef46a4 56cdbe87c9f65c00939b3fb1e5a91c1e hg38 Primary Tumor C3L-02888-02 C3L-02890.MethArray.Green.T C3L-02890 PDA Methylation Array tumor CPT0166650009 203561620008_R06C01_Grn.idat 13676236 IDAT Green 1b3192eb-a5d8-404c-bbab-1e6a4d708b4a 993e68dbce47c4b85844f30725390bc5 NA Primary Tumor C3L-02890-01,C3L-02890-02 C3L-02890.MethArray.Red.T C3L-02890 PDA Methylation Array tumor CPT0166650009 203561620008_R06C01_Red.idat 13676236 IDAT Red 718996ff-e713-40d7-8bdb-38c9e40a5f34 ca49d1c0b35804c29f65a2015d9e2f4b NA Primary Tumor C3L-02890-01,C3L-02890-02 C3L-02890.miRNA-Seq.T C3L-02890 PDA miRNA-Seq tumor CPT0166650012 190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L005_R1_001.unaln.bam 241719651 BAM NA 07e60f8e-2863-4c0d-b060-366547e9b06a 57d387208282753513576517ded1e8a6 NA Primary Tumor C3L-02890-01,C3L-02890-02 @@ -11222,8 +11228,11 @@ C3L-02955.WXS.N C3L-02955 GBM WXS blood_normal CPT0197750002 CPT0197750002.Whole C3L-02955.WXS.N.hg38 C3L-02955 GBM WXS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wxs_gdc_realn.bam 61179455806 BAM NA 535274f1-2bca-41a0-923b-ec0e1b8c5440 0e17c86ee2da66d5ff616948e525f15e hg38 Blood Derived Normal C3L-02955-31 C3L-02955.WXS.T C3L-02955 GBM WXS tumor CPT0196850009 CPT0196850009.WholeExome.RP-1303.bam 23009684162 BAM NA 478ed93d-e81d-4ee1-af82-d3fa85ce933a 2f2ce4427f8b135b8de6d6efdbdd02a1 hg19 Primary Tumor C3L-02955-01 C3L-02955.WXS.T.hg38 C3L-02955 GBM WXS tumor CPT0196850009 7258c996-c299-4b53-93bf-85df20425431_wxs_gdc_realn.bam 31696351927 BAM NA 278a2b87-c006-4b75-bca9-5cf3954c8412 023501b519ed3cfa26924882cb7b9141 hg38 Primary Tumor C3L-02955-01 +C3L-02956.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 a6ad652a-4a7a-4066-8e60-d964b7ee99a6.rna_seq.chimeric.gdc_realn.bam 150788160 BAM chimeric d3d71616-e413-4764-a8ed-e2153f495278 39b0e157c18e17be87a2625faeea46f7 hg38 Primary Tumor C3L-02956-01 +C3L-02956.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 a6ad652a-4a7a-4066-8e60-d964b7ee99a6.rna_seq.genomic.gdc_realn.bam 8089306615 BAM genomic 73db020f-46ab-48d3-b2d4-9b21655425e8 cfdfd06e1c3198fc930ca5bf508525ef hg38 Primary Tumor C3L-02956-01 C3L-02956.RNA-Seq.R1.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R1_001.fastq.gz 3329611166 FASTQ NA 0a392860-e58e-418e-b55f-a3bf63e70609 5426bfc2763d7522dd934490dfd82823 NA Primary Tumor C3L-02956-01 C3L-02956.RNA-Seq.R2.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R2_001.fastq.gz 3833389566 FASTQ NA 93b3cf8a-9ac7-4c5c-9283-76376d0a9259 2d4b46e2127e177681c5029e17dd3f3a NA Primary Tumor C3L-02956-01 +C3L-02956.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 a6ad652a-4a7a-4066-8e60-d964b7ee99a6.rna_seq.transcriptome.gdc_realn.bam 8776010334 BAM transcriptome 694923b1-94f4-4a87-9dcd-f322bf95f249 7c0a82a9122c3ed6d85f404e13371e08 hg38 Primary Tumor C3L-02956-01 C3L-02957.MethArray.Green.A C3L-02957 LUAD Methylation Array tissue_normal CPT0196900006 203219640133_R05C01_Grn.idat 13676226 IDAT Green 76f06ee5-750f-4105-855e-2dd5ccfe593f 9e920eb73f34265257d851fb99ad4b08 NA Solid Tissue Normal C3L-02957-06 C3L-02957.MethArray.Green.T C3L-02957 LUAD Methylation Array tumor CPT0196880006 203220070154_R04C01_Grn.idat 13676206 IDAT Green 85725044-8fa9-401b-9e87-e925d0cea228 d7f7c9def2449e907e2381107b1d26c1 NA Primary Tumor C3L-02957-02 C3L-02957.MethArray.Red.A C3L-02957 LUAD Methylation Array tissue_normal CPT0196900006 203219640133_R05C01_Red.idat 13676226 IDAT Red 5ee49171-905e-4550-bac5-6ac3d2643fbb 06d7f19fff8f6a8c5a1746d1eb4fc435 NA Solid Tissue Normal C3L-02957-06 @@ -11778,8 +11787,11 @@ C3L-03308.WXS.Nbc C3L-03308 AML WXS buccal_normal CPT0201630002 CPT0201630002.Wh C3L-03308.WXS.Nbc.hg38 C3L-03308 AML WXS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wxs_gdc_realn.bam 33863986000 BAM NA 9ea0ec47-41c9-4b2e-badb-ccfd4979751a 54d599e0a52fac7f3ba86f66a57866be hg38 Buccal Cell Normal C3L-03308-50,C3L-03308-51,C3L-03308-52 C3L-03308.WXS.Tbm C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeExome.RP-1303.bam 23177226677 BAM NA 89398d58-6aff-4b44-aee1-b4a1be711054 8a7eae1f421b9e4cc549887e7d14af57 hg19 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 C3L-03308.WXS.Tbm.hg38 C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wxs_gdc_realn.bam 32380906747 BAM NA 0d6b19e7-cafc-43e4-9401-37a8da579764 6f15826e0d25dcf5b08ceabcd7b20ae3 hg38 Primary Blood Derived Cancer - Bone Marrow C3L-03308-54 +C3L-03348.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 48c79716-77e7-4365-9f81-265bf83ad011.rna_seq.chimeric.gdc_realn.bam 314158961 BAM chimeric 6014ae35-55e2-4c3f-973d-d17a4cea98c3 21f85a829fa1cb4bc58dc16ba2545aaf hg38 Primary Tumor C3L-03348-03 +C3L-03348.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 48c79716-77e7-4365-9f81-265bf83ad011.rna_seq.genomic.gdc_realn.bam 9675219375 BAM genomic 4ece67bd-f47d-4477-9b10-4b71a118ce08 1853730af00f26fc3ad67b484faaa976 hg38 Primary Tumor C3L-03348-03 C3L-03348.RNA-Seq.R1.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R1_001.fastq.gz 4346927555 FASTQ NA cb4f0584-8ef0-4ed0-b10c-9b7e00aab287 27b9d71bb74d9cc28ef112766a28bf50 NA Primary Tumor C3L-03348-03 C3L-03348.RNA-Seq.R2.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R2_001.fastq.gz 4807680903 FASTQ NA 39cef4d2-3d3c-4e64-b7c0-2ee3c22a2606 9defce0f036eacb880d54011a6c6f899 NA Primary Tumor C3L-03348-03 +C3L-03348.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 48c79716-77e7-4365-9f81-265bf83ad011.rna_seq.transcriptome.gdc_realn.bam 10736250550 BAM transcriptome 6a3901de-4475-4068-8abd-87f64529efce 33353056fdd2ffaede17f90c23d858aa hg38 Primary Tumor C3L-03348-03 C3L-03350.MethArray.Green.T C3L-03350 PDA Methylation Array tumor CPT0198310008 203561450030_R06C01_Grn.idat 13676216 IDAT Green a85a8a13-e047-4e86-94c8-3f070d40971b beac862c52e72f57a01d02dc3b9004ff NA Primary Tumor C3L-03350-01,C3L-03350-03 C3L-03350.MethArray.Red.T C3L-03350 PDA Methylation Array tumor CPT0198310008 203561450030_R06C01_Red.idat 13676216 IDAT Red 94a4729b-2548-408c-acfd-e21b6676634f 092da6eaa4d523f244241b553a76d214 NA Primary Tumor C3L-03350-01,C3L-03350-03 C3L-03350.miRNA-Seq.T C3L-03350 PDA miRNA-Seq tumor CPT0198310011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L005_R1_001.unaln.bam 244660424 BAM NA d9497292-ce88-4a2c-ba01-cb532316352c e8c04c64348f5721b579ce52a468d901 NA Primary Tumor C3L-03350-01,C3L-03350-03 @@ -12291,8 +12303,11 @@ C3L-03589.WXS.N C3L-03589 UCEC WXS blood_normal CPT0188770002 CPT0188770002.Whol C3L-03589.WXS.N.hg38 C3L-03589 UCEC WXS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wxs_gdc_realn.bam 32013242171 BAM NA 39e343ca-ccae-406e-b79e-46c1b13d585c c21650abd03dd37690be33dda1050ac8 hg38 Blood Derived Normal C3L-03589-71 C3L-03589.WXS.T C3L-03589 UCEC WXS tumor CPT0188710006 CPT0188710006.WholeExome.RP-1303.bam 27977586785 BAM NA abdfdd89-5f4e-4ef0-8874-c6f2235de180 98cc2eb4542757d259770bfdf0d1e125 hg19 Primary Tumor C3L-03589-03 C3L-03589.WXS.T.hg38 C3L-03589 UCEC WXS tumor CPT0188710006 7683eac6-c2fe-47d2-969f-5d90ef340b6a_wxs_gdc_realn.bam 39643076597 BAM NA c38f1f62-a3fb-4a49-a51b-8ff31ececee1 dab1be6c12660ccb4b3e9c8c18304bbb hg38 Primary Tumor C3L-03589-03 +C3L-03622.RNA-Seq.chimeric.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 6227b161-8d0f-4d43-97f2-04cf5a8a2113.rna_seq.chimeric.gdc_realn.bam 283867474 BAM chimeric 12f97245-6a97-40de-a97f-fb5bdb54f432 13792b32a97d88893d9c31b9437eb115 hg38 Primary Tumor C3L-03622-02 +C3L-03622.RNA-Seq.genomic.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 6227b161-8d0f-4d43-97f2-04cf5a8a2113.rna_seq.genomic.gdc_realn.bam 9154532475 BAM genomic c64296fc-0e46-46c5-85a3-0104d470ec98 10033af4b1f063554b48936aa940b948 hg38 Primary Tumor C3L-03622-02 C3L-03622.RNA-Seq.R1.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R1_001.fastq.gz 3685200138 FASTQ NA 7edc8bc7-80fc-466d-bae6-ea92952dc276 12bf08494f7a147f1af2757ee04e6365 NA Primary Tumor C3L-03622-02 C3L-03622.RNA-Seq.R2.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R2_001.fastq.gz 4305534457 FASTQ NA 71eca917-c9e4-4e30-b6c6-87ab271d4005 0fac15fd527557478eedf1ee97aec220 NA Primary Tumor C3L-03622-02 +C3L-03622.RNA-Seq.transcriptome.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 6227b161-8d0f-4d43-97f2-04cf5a8a2113.rna_seq.transcriptome.gdc_realn.bam 9612606897 BAM transcriptome 64a3e10e-e2ad-447c-9baa-720635d30a30 3aa2c8eafb47f5e2343c040b3b08936d hg38 Primary Tumor C3L-03622-02 C3L-03624.MethArray.Green.T.BULK_VONgrMO C3L-03624 PDA Methylation Array tumor CPT0198600029 203561450054_R06C01_Grn.idat 13676216 IDAT Green d3d57b07-2190-4139-8b13-5d0b898fc315 5ca344f85edf0bb111aa8bb930127282 NA Primary Tumor C3L-03624-02 bulk_DNA BULK_VONgrMO Duplicate item: PDA Pilot - bulk-derived DNA C3L-03624.MethArray.Green.T.CORE_M89OglR.core C3L-03624 PDA Methylation Array tumor CPT0198600023 203561450106_R06C01_Grn.idat 13676216 IDAT Green 99917422-bc29-474e-ac63-c55f951c5f29 5d43b6e4dedee263cb4287afa4e7163e NA Primary Tumor C3L-03624-02 .core core_DNA CORE_M89OglR Duplicate item: PDA Pilot - core-derived DNA C3L-03624.MethArray.Red.T.BULK_VONgrMO C3L-03624 PDA Methylation Array tumor CPT0198600029 203561450054_R06C01_Red.idat 13676216 IDAT Red 1005c423-1b8a-4f80-8aff-73d534839915 1303ff3080de643fe0991f280151552a NA Primary Tumor C3L-03624-02 bulk_DNA BULK_VONgrMO Duplicate item: PDA Pilot - bulk-derived DNA @@ -12332,8 +12347,11 @@ C3L-03628.WXS.N C3L-03628 PDA WXS blood_normal CPT0198740002 CPT0198740002.Whole C3L-03628.WXS.N.hg38 C3L-03628 PDA WXS blood_normal CPT0198740002 eb7b05e5-5bdf-4428-86dc-c3db5026f54d_wxs_gdc_realn.bam 39365199085 BAM NA dd82c39e-22e0-46eb-a844-2fe349b189ca 28322c6619a38f31234cf3ad63f599ef hg38 Blood Derived Normal C3L-03628-31 C3L-03628.WXS.T.hg38.high_cov C3L-03628 PDA WXS tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_wxs_gdc_realn.bam 72532663191 BAM NA d40063dc-8e93-4938-8ebc-29e56169bb36 1e7d22e2b97179eff14dd4aeb25facb8 hg38 Primary Tumor C3L-03628-01,C3L-03628-02 .high_cov C3L-03628.WXS.T.high_cov C3L-03628 PDA WXS tumor CPT0198700008 CPT0198700008.WholeExome.RP-1303.bam 52288761525 BAM NA 6e2d92da-2d9c-4634-b2da-e04534bd2fcc 2ae31f884c27ecd80f58132fda566f32 hg19 Primary Tumor C3L-03628-01,C3L-03628-02 .high_cov +C3L-03629.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.chimeric.gdc_realn.bam 226367994 BAM chimeric 1c16ec0e-9413-4411-ba50-c578e621188c 11a60efb22c6c9b9958f6ecf410e0ee2 hg38 Primary Tumor C3L-03629-02 +C3L-03629.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.genomic.gdc_realn.bam 10332204498 BAM genomic 150d0515-cb89-40d5-81c4-e79360711375 753b2af76f3c15bf430412e572c969a1 hg38 Primary Tumor C3L-03629-02 C3L-03629.RNA-Seq.R1.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R1_001.fastq.gz 3422136785 FASTQ NA 7fecdbc1-0f98-4335-bf75-3036a9d9ab9e 22354d5ee834f218f1f2d5a1560218c7 NA Primary Tumor C3L-03629-02 C3L-03629.RNA-Seq.R2.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R2_001.fastq.gz 3771090019 FASTQ NA 74d67b6a-cbb9-458f-b5b6-c498e4e559fc 86a2a6f11f211ae31e3fc7921761788a NA Primary Tumor C3L-03629-02 +C3L-03629.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.transcriptome.gdc_realn.bam 7661015381 BAM transcriptome f934a826-297d-416d-86e1-630d5e7dcddc 4d03aae6b4dc3ade8c490c407541e8eb hg38 Primary Tumor C3L-03629-02 C3L-03630.MethArray.Green.T C3L-03630 PDA Methylation Array tumor CPT0198910008 203561450008_R06C01_Grn.idat 13676221 IDAT Green d268937b-f28f-4bfe-bab5-dc3fe674d81a f4a71092e2cb3bff1a8d6e7231aaa53f NA Primary Tumor C3L-03630-02,C3L-03630-03 C3L-03630.MethArray.Red.T C3L-03630 PDA Methylation Array tumor CPT0198910008 203561450008_R06C01_Red.idat 13676221 IDAT Red 53dd3494-bb5c-45a2-b6d4-c5cf5938393c f639c9e7e929c680f34b569ddbdd43b1 NA Primary Tumor C3L-03630-02,C3L-03630-03 C3L-03630.miRNA-Seq.T C3L-03630 PDA miRNA-Seq tumor CPT0198910011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L005_R1_001.unaln.bam 201073157 BAM NA 87eb915e-ce48-4726-b06f-df2635e2cd8c fa5d0ebba13efac7701b81ccbf3bcfb6 NA Primary Tumor C3L-03630-02,C3L-03630-03 @@ -12611,8 +12629,11 @@ C3L-03728.WXS.N.hg38 C3L-03728 GBM WXS blood_normal CPT0226080002 97ec897b-c7b9- C3L-03728.WXS.T C3L-03728 GBM WXS tumor CPT0225760006 CPT0225760006.WholeExome.RP-1303.bam 26317526083 BAM NA c2addcd8-750b-4cca-a7dc-2d575e954e2d 5709de1f26454f7bc383710e788c113d hg19 Primary Tumor C3L-03728-01 C3L-03728.WXS.T.hg38 C3L-03728 GBM WXS tumor CPT0225760006 269ffccf-de74-4303-8d2f-0b737598d9f9_wxs_gdc_realn.bam 35731653164 BAM NA ed09a41d-0f97-4e69-9b66-9500b0a7381f 93df15b377b2aac359a84f06f96da6ba hg38 Primary Tumor C3L-03728-01 C3L-03733.miRNA-Seq.T C3L-03733 GBM miRNA-Seq tumor CPT0388870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GATCAG_S30_L007_R1_001.unaln.bam 223566229 BAM NA 10d636a4-81d8-42c4-a6b0-c6a7fd06b140 4f8c18eeb73beece79024f090ea0aa73 NA Primary Tumor C3L-03733-01 +C3L-03733.RNA-Seq.chimeric.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.chimeric.gdc_realn.bam 266652397 BAM chimeric b3daf9ad-b0b9-415c-b8cc-ef408f35bde5 dd075f149f73976e70f86ad4c5ab6115 hg38 Primary Tumor C3L-03733-01 +C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.genomic.gdc_realn.bam 8072691075 BAM genomic a605a275-a926-4536-8d33-362729a6d51d 154fcf360674b4895569c7fdbcfdbc2f hg38 Primary Tumor C3L-03733-01 C3L-03733.RNA-Seq.R1.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ NA d3c8b80a-f15c-47ad-927e-96483a71a4ac 8a7625be123cf1142d9d514d3dd2f0fe NA Primary Tumor C3L-03733-01 C3L-03733.RNA-Seq.R2.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ NA d68a3a3f-d8d9-488f-b581-3eb6bf3c545f 3417e6f248552d41697758862f7c9a80 NA Primary Tumor C3L-03733-01 +C3L-03733.RNA-Seq.transcriptome.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.transcriptome.gdc_realn.bam 8361762021 BAM transcriptome 8d20e81a-8244-4331-9dd7-f3b3dc93823c 2c58936231389fae9a33064d88c4bf7c hg38 Primary Tumor C3L-03733-01 C3L-03733.WGS.N C3L-03733 GBM WGS blood_normal CPT0388900002 CPT0388900002.WholeGenome.RP-2158.bam 25383296813 BAM NA cd628747-fd76-4da6-97cb-6e20282d4b6a f60aa2f2e02306c83488611b2cf877ce hg19 Blood Derived Normal C3L-03733-31 C3L-03733.WGS.T C3L-03733 GBM WGS tumor CPT0388870006 CPT0388870006.WholeGenome.RP-2158.bam 21210221177 BAM NA 085c2ec3-e073-4e33-b105-b7a31acfd571 930a132c5a56fb79f5a2efd0e2be2ff5 hg19 Primary Tumor C3L-03733-01 C3L-03733.WXS.N C3L-03733 GBM WXS blood_normal CPT0388900002 CPT0388900002.WholeExome.RP-1303.bam 25281066656 BAM NA 899e62b6-5d45-429c-b1a8-1de6e24057c5 5cdca3407113895fc108311062353b93 hg19 Blood Derived Normal C3L-03733-31 @@ -13455,8 +13476,11 @@ C3L-04084.WXS.N.hg38 C3L-04084 GBM WXS blood_normal CPT0218020002 2c910118-4ad0- C3L-04084.WXS.T C3L-04084 GBM WXS tumor CPT0217100006 CPT0217100006.WholeExome.RP-1303.bam 28674645437 BAM NA dd388923-0a5f-417f-992b-30d6e0352443 2be82f27621dfe6094cfdffef3fced13 hg19 Primary Tumor C3L-04084-04 C3L-04084.WXS.T.hg38 C3L-04084 GBM WXS tumor CPT0217100006 a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wxs_gdc_realn.bam 39609281734 BAM NA 25e63555-2fda-402c-b370-947e6c99f146 2abdb9511918f745956ec7c62054f74c hg38 Primary Tumor C3L-04084-04 C3L-04085.miRNA-Seq.T C3L-04085 GBM miRNA-Seq tumor CPT0242520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 287761601 BAM NA bc6d5dfb-bb31-45ae-8b0e-2a08360a5cd7 cb6a11627511330be2551dabf94fb84e NA Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 +C3L-04085.RNA-Seq.chimeric.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.chimeric.gdc_realn.bam 604876518 BAM chimeric 1d12d990-5903-40af-ac05-635577cdd34f 3ba9b6e29c6246ddc2dfc8bcbae7c20d hg38 Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 +C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.genomic.gdc_realn.bam 9274069937 BAM genomic 2e1e8d8d-b8a0-4b45-90f5-39bbffe76738 c85eee84e723e878b31c6729f5f99ef7 hg38 Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.RNA-Seq.R1.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ NA 25f5bea4-fef4-4378-9ccb-8a5befebf88a f7da59772143538816e2c5dd6b9d4b60 NA Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.RNA-Seq.R2.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ NA f0486b67-d5ff-4ae5-97ff-218d95b1e496 d94ec5a4807f86bac4a3cf58aea162d1 NA Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 +C3L-04085.RNA-Seq.transcriptome.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.transcriptome.gdc_realn.bam 8723177874 BAM transcriptome b494c7e0-9bb1-4896-973e-ef7039969f2d 2b46c170b86479f8a78d7c7ec1f973a4 hg38 Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.WGS.N C3L-04085 GBM WGS blood_normal CPT0243440002 CPT0243440002.WholeGenome.RP-2158.bam 22966209999 BAM NA 01ee3659-ba85-44ef-b3f6-0af789f0ac5f 92e7683a106258351e6cd8a9dd07ef23 hg19 Blood Derived Normal C3L-04085-31 C3L-04085.WGS.T C3L-04085 GBM WGS tumor CPT0242520007 CPT0242520007.WholeGenome.RP-2158.bam 22101856002 BAM NA fc6a67f7-5b0c-428b-875e-8a1443af63f5 799fdc32c48861a960360077ea6e8a22 hg19 Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.WXS.N C3L-04085 GBM WXS blood_normal CPT0243440002 CPT0243440002.WholeExome.RP-1303.bam 21928962196 BAM NA 1f09d693-58d4-4604-920f-69d7385f0be8 d747d50fe35cbb81a70c1d991424d8d7 hg19 Blood Derived Normal C3L-04085-31 @@ -13891,8 +13915,11 @@ C3L-04391.WXS.N.hg38 C3L-04391 LSCC WXS blood_normal CPT0235180002 7d68aadc-cfad C3L-04391.WXS.T C3L-04391 LSCC WXS tumor CPT0234560006 CPT0234560006.WholeExome.RP-1303.bam 24969656189 BAM NA 0888f3e9-d002-48f2-92f4-f3de93e38468 172e10739e617722a6219f71689d46ad hg19 Primary Tumor C3L-04391-02 C3L-04391.WXS.T.hg38 C3L-04391 LSCC WXS tumor CPT0234560006 a52caf88-af54-482a-adcc-5c303877aa1b_wxs_gdc_realn.bam 34429160845 BAM NA 1bc99f74-4329-4248-ba2d-38dac011326a 3cb9a490d45bc7374c09c7ecc008c405 hg38 Primary Tumor C3L-04391-02 C3L-04392.miRNA-Seq.T C3L-04392 GBM miRNA-Seq tumor CPT0393310009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAGCTT_S38_L007_R1_001.unaln.bam 358392894 BAM NA 5432af42-018a-4faa-8492-77175e136ac0 47bf2742dd7a32550d450c429c968694 NA Primary Tumor C3L-04392-03 +C3L-04392.RNA-Seq.chimeric.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.chimeric.gdc_realn.bam 533290308 BAM chimeric ee94b059-b600-4cfb-b243-925ff1add9c2 5051f0688a34c4a1d32200c273fca218 hg38 Primary Tumor C3L-04392-03 +C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.genomic.gdc_realn.bam 8483865279 BAM genomic 05a0f689-ebd2-4d68-a658-f3a4b54b391c af3569d9101df46fb6666ca453230185 hg38 Primary Tumor C3L-04392-03 C3L-04392.RNA-Seq.R1.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ NA d815c7ac-1edc-4e57-a53b-947849bdb025 7f57961d1f57e808fba6a0a2d9b8869f NA Primary Tumor C3L-04392-03 C3L-04392.RNA-Seq.R2.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ NA 65353cb8-0cb1-4747-a95d-b11ff0bc7361 5cdf19e1b0bae31ef1932a8e1f1e687d NA Primary Tumor C3L-04392-03 +C3L-04392.RNA-Seq.transcriptome.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.transcriptome.gdc_realn.bam 8501340103 BAM transcriptome ef6fcbfe-67bc-46df-83e4-ed1599448f00 544644770eed61ca11e79664103837b6 hg38 Primary Tumor C3L-04392-03 C3L-04392.WGS.N C3L-04392 GBM WGS blood_normal CPT0392370002 CPT0392370002.WholeGenome.RP-2158.bam 24049436111 BAM NA f243bcd7-9195-4d38-817f-618977fb28eb c2775ba6b3e3e724e3ee4db10ef63778 hg19 Blood Derived Normal C3L-04392-31 C3L-04392.WGS.T C3L-04392 GBM WGS tumor CPT0393310006 CPT0393310006.WholeGenome.RP-2158.bam 25106387064 BAM NA 35aee152-5492-4664-8706-ca92247a2a81 f55a8d674bd88870ed7e381417c7214e hg19 Primary Tumor C3L-04392-03 C3L-04392.WXS.N C3L-04392 GBM WXS blood_normal CPT0392370002 CPT0392370002.WholeExome.RP-1303.bam 29321820408 BAM NA 097aa948-f10b-46c4-b757-6cdb889edd9a abb9dd25e41f6240ac63d471f6fbeb75 hg19 Blood Derived Normal C3L-04392-31 @@ -15461,8 +15488,11 @@ C3L-05225.WXS.N.hg38 C3L-05225 LSCC WXS blood_normal CPT0296690002 3b73345c-6a2e C3L-05225.WXS.T C3L-05225 LSCC WXS tumor CPT0296570006 CPT0296570006.WholeExome.RP-1303.bam 19475882881 BAM NA 987e1444-ba3d-41f6-b6c2-ed0e9392416f 20deaa0b8dbf19f272d23fa389b477d3 hg19 Primary Tumor C3L-05225-01 C3L-05225.WXS.T.hg38 C3L-05225 LSCC WXS tumor CPT0296570006 81cdcf02-73f2-42cc-9306-818c9c6869ae_wxs_gdc_realn.bam 26692348336 BAM NA cff5ad7d-816f-4f8f-b919-f96dbac7cbe2 b500bdf342dad6eafce479c71e67f1ab hg38 Primary Tumor C3L-05225-01 C3L-05239.miRNA-Seq.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM NA 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 NA Primary Tumor C3L-05239-05 +C3L-05239.RNA-Seq.chimeric.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.chimeric.gdc_realn.bam 72950232 BAM chimeric 89e775ff-9a60-46c7-9427-004804998290 4ab33daaa94b18ad816b996feced04c2 hg38 Primary Tumor C3L-05239-05 +C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.genomic.gdc_realn.bam 7849393604 BAM genomic 27038062-dcbd-46a1-9d52-714e8b86af6e 3899a0d56726c11ef1b84f51ea93021f hg38 Primary Tumor C3L-05239-05 C3L-05239.RNA-Seq.R1.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ NA 8161f3a1-1b1a-442f-aaf3-faabd976c99a 017652ccbf783557146fac20f6b01bfe NA Primary Tumor C3L-05239-05 C3L-05239.RNA-Seq.R2.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ NA b2cc1d59-536e-4c59-89df-f6808282e91f caab0a5abb6f92364ade534073d9ad61 NA Primary Tumor C3L-05239-05 +C3L-05239.RNA-Seq.transcriptome.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.transcriptome.gdc_realn.bam 8369304175 BAM transcriptome 5d638754-b33f-4154-9c24-7f91b8592b27 25857b4e86dec817eae764884dfdb3a3 hg38 Primary Tumor C3L-05239-05 C3L-05239.WGS.N C3L-05239 GBM WGS blood_normal CPT0346770002 CPT0346770002.WholeGenome.RP-2158.bam 24306484177 BAM NA f50882a9-ba11-46d8-8ae1-b3db9fe73ca6 9e50f542d916427f958a5d28b4fafbd1 hg19 Blood Derived Normal C3L-05239-31 C3L-05239.WGS.T C3L-05239 GBM WGS tumor CPT0346710006 CPT0346710006.WholeGenome.RP-2158.bam 23404612085 BAM NA 5f728e2a-492a-4fd8-b33a-3cfd30bba9cf 0e484ffc3e5d09555523e7ddc81bd1f4 hg19 Primary Tumor C3L-05239-05 C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal CPT0346770002 CPT0346770002.WholeExome.RP-1303.bam 19041494244 BAM NA e8806b58-3c7b-4542-bba9-fb85d3bcd231 6597ef1065aad1aa88005ad879145822 hg19 Blood Derived Normal C3L-05239-31 @@ -22512,8 +22542,11 @@ C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010 CPT0094230010.WholeExome.R C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010 84eb0d82-6640-4db2-a981-44810476cca7_wxs_gdc_realn.bam 46403245903 BAM NA 1c05d345-e7e0-4082-a3b3-f60c51ffe779 154930efd7d8f6074e5614a93485ff6e hg38 Primary Tumor C3N-01383-01,C3N-01383-03 C3N-01383.WXS.T.hg38.high_cov C3N-01383 PDA WXS tumor CPT0094230010_1 75bb8fa6-86ac-434f-afd7-12332afe19f1_wxs_gdc_realn.bam 78814281670 BAM NA 1981d72f-4966-4b2c-9ee7-845c9791f6d9 728c5b3861b1f07552fd9bf872fcf35d hg38 Primary Tumor C3N-01383-03 .high_cov C3N-01383.WXS.T.high_cov C3N-01383 PDA WXS tumor CPT0094230010_1 CPT0094230010_1.WholeExome.RP-1303.bam 57192231159 BAM NA d3f25d43-c678-4a66-9485-47ff3a1b9cf9 391f291d8a0e2700033e3b713eb5704f hg19 Primary Tumor C3N-01383-03 .high_cov +C3N-01385.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.chimeric.gdc_realn.bam 226163921 BAM chimeric 4c42e26b-8905-4733-9ac2-633127a1d109 280da2114180da1e16a119ad28ddd8c5 hg38 Primary Tumor C3N-01385-02 +C3N-01385.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.genomic.gdc_realn.bam 13691636489 BAM genomic 307b4934-d214-4c65-91f8-75cd047bf8d5 bf87040b838d26ab3ca569a9c9072c3b hg38 Primary Tumor C3N-01385-02 C3N-01385.RNA-Seq.R1.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R1_001.fastq.gz 4922822305 FASTQ NA 4799b1ce-1a07-4ab4-a176-22371dbfbba7 e40d4a33f316383866d4af07cfbf7e9a NA Primary Tumor C3N-01385-02 C3N-01385.RNA-Seq.R2.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R2_001.fastq.gz 5749298642 FASTQ NA 6b5fe0a9-edcc-4108-86a3-d2f6c034e8cf 4429ae00d936c07b0072846ab6237749 NA Primary Tumor C3N-01385-02 +C3N-01385.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.transcriptome.gdc_realn.bam 11587883646 BAM transcriptome 5b3c9db5-9a66-43c4-a362-36d64ed8c32b 09a166ddef7142ba6c6774521d548511 hg38 Primary Tumor C3N-01385-02 C3N-01388.MethArray.Green.T.deprecated C3N-01388 PDA Methylation Array tumor CPT0088320009 202178770079_R07C01_Grn.idat 13676241 IDAT Green 40305a71-642d-4f9b-9a57-75afad6e456c f46eb3c1df3fcf5e5a974866592e7470 NA Primary Tumor C3N-01388-03 .deprecated C3N-01388.MethArray.Red.T.deprecated C3N-01388 PDA Methylation Array tumor CPT0088320009 202178770079_R07C01_Red.idat 13676241 IDAT Red 0b33687a-fbe4-41e3-be90-b1a254a60172 dd7300f687d0023060df6bb8123b5863 NA Primary Tumor C3N-01388-03 .deprecated C3N-01388.miRNA-Seq.T C3N-01388 PDA miRNA-Seq tumor CPT0088320006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L008_R1_001.unaln.bam 270159749 BAM NA b245afc2-1540-4b04-8cc3-a4bf672396c7 ed2f88d594cfd15afd7331c994375fc3 NA Primary Tumor C3N-01388-03 @@ -24950,10 +24983,16 @@ C3N-01897.WXS.T.BULK_OVLqnQ.hg38.high_cov C3N-01897 PDA WXS tumor CPT0162300025 C3N-01897.WXS.T.BULK_OVLqnQ.high_cov C3N-01897 PDA WXS tumor CPT0162300025 CPT0162300025.WholeExome.RP-1303.bam 48974407289 BAM NA 5773f62a-fd76-4ab1-b457-a9d41dc937d2 7e0032225587ada183fbb6bb4eaed399 hg19 Primary Tumor C3N-01897-01 .high_cov bulk_DNA BULK_OVLqnQ Duplicate item: PDA Pilot - bulk-derived DNA C3N-01897.WXS.T.CORE_GyzgO3.core.high_cov C3N-01897 PDA WXS tumor CPT0162300019 CPT0162300019.WholeExome.RP-1303.bam 68103574759 BAM NA dec364d2-cc30-4ed1-8fbe-81ecd61f016f 9396ce327577e44dbfa21202ad7b257a hg19 Primary Tumor C3N-01897-01 .core.high_cov core_DNA CORE_GyzgO3 Duplicate item: PDA Pilot - core-derived DNA C3N-01897.WXS.T.CORE_GyzgO3.hg38.core.high_cov C3N-01897 PDA WXS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wxs_gdc_realn.bam 94888641588 BAM NA 9275086f-3c69-403f-9051-2c857279c158 4fd17ea762785c62b06eaac8819e4c97 hg38 Primary Tumor C3N-01897-01 .core.high_cov core_DNA CORE_GyzgO3 Duplicate item: PDA Pilot - core-derived DNA +C3N-01898.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.chimeric.gdc_realn.bam 289173306 BAM chimeric ba4b882d-067b-49c7-a903-a4a3c8f954a9 53c7c36b9c180d02d566bca7f87cb8f5 hg38 Primary Tumor C3N-01898-04 +C3N-01898.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.genomic.gdc_realn.bam 8527956869 BAM genomic 63ea1b1d-2442-4b87-8f18-242f980c060b 31a72a24a78dc69acb8f332e0127b1cc hg38 Primary Tumor C3N-01898-04 C3N-01898.RNA-Seq.R1.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R1_001.fastq.gz 3316609926 FASTQ NA 694277e7-1aff-43fb-8e21-b273a0c01c0c c1e841ac4e503251103bbeebbb84d3a0 NA Primary Tumor C3N-01898-04 C3N-01898.RNA-Seq.R2.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R2_001.fastq.gz 3701937380 FASTQ NA a19de46c-14a1-4ce2-b5d4-a9b165d0de3c ae2f903c68f12ed0b289f0c01dbf17e5 NA Primary Tumor C3N-01898-04 +C3N-01898.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.transcriptome.gdc_realn.bam 8247726459 BAM transcriptome 7a91f975-56f8-463c-84a7-c686129eb136 fde1f4fcb2d5f16c284553214f937153 hg38 Primary Tumor C3N-01898-04 +C3N-01899.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.chimeric.gdc_realn.bam 300284175 BAM chimeric 2acb8183-86e3-4b6c-a794-37f173b13875 252591fafd097b0d74a1d1896ee21ceb hg38 Primary Tumor C3N-01899-02 +C3N-01899.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.genomic.gdc_realn.bam 8747808499 BAM genomic b80e4b7c-62f0-47c2-b20a-8f3fe8d7268d 6aa6d58def9297179f6643eb86ae254f hg38 Primary Tumor C3N-01899-02 C3N-01899.RNA-Seq.R1.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R1_001.fastq.gz 3734049373 FASTQ NA d7b1e5cb-031f-4fbf-b7ed-351cbedff5d0 61c9b289bd2f99bb2c3cf02bf0f7e3f9 NA Primary Tumor C3N-01899-02 C3N-01899.RNA-Seq.R2.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R2_001.fastq.gz 4458738039 FASTQ NA d394d5b2-2762-4c60-b68d-fcfb9ea43bbf 1c2ead47fa98f1cebeb8811d1da804a0 NA Primary Tumor C3N-01899-02 +C3N-01899.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.transcriptome.gdc_realn.bam 9963635485 BAM transcriptome ed8035eb-8d18-4552-bdc5-359a0f882e61 a7bce048ea97b7281011dc49365932fb hg38 Primary Tumor C3N-01899-02 C3N-01900.MethArray.Green.T C3N-01900 PDA Methylation Array tumor CPT0162600008 203561450102_R01C01_Grn.idat 13676236 IDAT Green ec22480d-960c-450f-baec-b3dded6df11e 09b4fb5fe64e9ad2e57a41fe8276cba7 NA Primary Tumor C3N-01900-03 C3N-01900.MethArray.Red.T C3N-01900 PDA Methylation Array tumor CPT0162600008 203561450102_R01C01_Red.idat 13676236 IDAT Red c23e280e-05d6-4622-bf1d-e81bd5d26b1d 1c71e1893f19bd15410a324ed0112c8e NA Primary Tumor C3N-01900-03 C3N-01900.miRNA-Seq.T C3N-01900 PDA miRNA-Seq tumor CPT0162600011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L004_R1_001.unaln.bam 255444431 BAM NA 4052e1de-db18-4cb2-92a5-ba03ae107ca1 d91c572808973e9bcea5336e1e3c5390 NA Primary Tumor C3N-01900-03 @@ -28474,8 +28513,11 @@ C3N-02592.WXS.N C3N-02592 PDA WXS blood_normal CPT0162820002 CPT0162820002.Whole C3N-02592.WXS.N.hg38 C3N-02592 PDA WXS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wxs_gdc_realn.bam 30449199716 BAM NA 0bf1b98c-fa49-4fb7-8b8c-edb0059aa775 38d95e27a81389217f2a9e9cf174cc04 hg38 Blood Derived Normal C3N-02592-31 C3N-02592.WXS.T.hg38.high_cov C3N-02592 PDA WXS tumor CPT0162760006 61953ee5-9be4-4e83-abae-1bc34aa7cbb0_wxs_gdc_realn.bam 70267238794 BAM NA bc04e678-67f7-4638-9a99-885776094996 4e6d54986261a035d06c1ca2af5b8389 hg38 Primary Tumor C3N-02592-01 .high_cov C3N-02592.WXS.T.high_cov C3N-02592 PDA WXS tumor CPT0162760006 CPT0162760006.WholeExome.RP-1303.bam 50433519264 BAM NA a5724f15-059d-4dee-982f-e2425bf50421 4378ccb76ee5934ef0b2e3222ffa7733 hg19 Primary Tumor C3N-02592-01 .high_cov +C3N-02594.RNA-Seq.chimeric.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.chimeric.gdc_realn.bam 198882545 BAM chimeric a21ec9f5-306e-4a5e-b280-887677858abe 2f1050dd659acd6b00cccd35fd185a43 hg38 Primary Tumor C3N-02594-01 +C3N-02594.RNA-Seq.genomic.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.genomic.gdc_realn.bam 12694184597 BAM genomic 648eaf3a-af96-422b-8f8e-4971205a5daa 2017eb0f5a6ceda574de5105cd131fd8 hg38 Primary Tumor C3N-02594-01 C3N-02594.RNA-Seq.R1.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R1_001.fastq.gz 4800841678 FASTQ NA 3df2a0b9-0800-444f-a464-382f1eaca300 c14f2ac59b9e263ddcea552e8d0773cb NA Primary Tumor C3N-02594-01 C3N-02594.RNA-Seq.R2.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R2_001.fastq.gz 5330813125 FASTQ NA 1a53587a-e0d6-41de-971b-1436817632be 642d718dfc6fb7b9b7edbe0f8265a113 NA Primary Tumor C3N-02594-01 +C3N-02594.RNA-Seq.transcriptome.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.transcriptome.gdc_realn.bam 11829699050 BAM transcriptome d035a33c-cab6-4c8e-be11-18e12ee4ff30 c94011e2326d594af33cd54d525b888d hg38 Primary Tumor C3N-02594-01 C3N-02595.MethArray.Green.T C3N-02595 UCEC Methylation Array tumor CPT0181810007 203561450025_R06C01_Grn.idat 13676221 IDAT Green b2e81e85-ffe6-4909-83da-5ba3a3002766 4dc55bfac01ec3808f472e341d0ef6f7 NA Primary Tumor C3N-02595-01 C3N-02595.MethArray.Red.T C3N-02595 UCEC Methylation Array tumor CPT0181810007 203561450025_R06C01_Red.idat 13676221 IDAT Red 967a558a-5b88-4239-aacb-c8b97f73bd44 3bffee10e3f7898b54a5b8330ab39886 NA Primary Tumor C3N-02595-01 C3N-02595.miRNA-Seq.T C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L004_R1_001.unaln.bam 220335067 BAM NA 14c1d43b-68c4-4cdd-a1cb-d244d3fcf31f 098968f349d9af630447c4a50400abf6 NA Primary Tumor C3N-02595-01 @@ -28830,8 +28872,11 @@ C3N-02695.WXS.N C3N-02695 HNSCC WXS blood_normal CPT0245000002 CPT0245000002.Who C3N-02695.WXS.N.hg38 C3N-02695 HNSCC WXS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wxs_gdc_realn.bam 33321790265 BAM NA 254a5b1d-3581-4940-a0a6-1f9d0feb4cc6 7eef1e4345ef339c1915948d7b22bb4f hg38 Blood Derived Normal C3N-02695-31 C3N-02695.WXS.T.hg38.high_cov C3N-02695 HNSCC WXS tumor CPT0244940010 ed4abe3e-4046-4eb6-9760-036fd53f3af5_wxs_gdc_realn.bam 65755098091 BAM NA 652a39ee-ec5d-4f2d-9344-ba1f77d6ae74 bbd99ea38188af28a1671bc2073cb4e6 hg38 Primary Tumor C3N-02695-01,C3N-02695-02 .high_cov C3N-02695.WXS.T.high_cov C3N-02695 HNSCC WXS tumor CPT0244940010 CPT0244940010.WholeExome.RP-1303.bam 48153539053 BAM NA 2d58c04b-135a-46f5-8e07-78cd8c22e4df 7743fb59f788c3dc1d6293581c25268e hg19 Primary Tumor C3N-02695-01,C3N-02695-02 .high_cov +C3N-02696.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 919a79c7-d6c1-4fca-a00c-55b29a3eee7e.rna_seq.chimeric.gdc_realn.bam 527730577 BAM chimeric b0e07c5e-a0e9-46ef-9dbb-dbb1188c1067 bfa4f0496fca2145c15d429d82d642d6 hg38 Primary Tumor C3N-02696-02 +C3N-02696.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 919a79c7-d6c1-4fca-a00c-55b29a3eee7e.rna_seq.genomic.gdc_realn.bam 12805894120 BAM genomic da4f629c-78c4-4f0d-8ff9-3f67959e3aba 2ae5ebf4c55dd977899b7ced87475177 hg38 Primary Tumor C3N-02696-02 C3N-02696.RNA-Seq.R1.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R1_001.fastq.gz 5395654595 FASTQ NA d21f8288-6844-4693-9f81-781a52b7c925 19b83578d3544646e37a0408704a5974 NA Primary Tumor C3N-02696-02 C3N-02696.RNA-Seq.R2.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R2_001.fastq.gz 6089753546 FASTQ NA 6657cbe8-77b7-4d68-a44a-be781736d0a8 50ae117fc3ad64a517528d924a5287d3 NA Primary Tumor C3N-02696-02 +C3N-02696.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 919a79c7-d6c1-4fca-a00c-55b29a3eee7e.rna_seq.transcriptome.gdc_realn.bam 12644023039 BAM transcriptome d6a0e908-a428-492e-a7c7-ef500c3aef1a abf66addce965ad5be3099a3ef2fe44e hg38 Primary Tumor C3N-02696-02 C3N-02697.MethArray.Green.T C3N-02697 PDA Methylation Array tumor CPT0187780007 203561620153_R02C01_Grn.idat 13676211 IDAT Green 4814ffc2-1abf-44ca-96a1-10fcb0852a1a 6be61a0ee3cfbd0c2805600bfa5d2ff3 NA Primary Tumor C3N-02697-01 C3N-02697.MethArray.Red.T C3N-02697 PDA Methylation Array tumor CPT0187780007 203561620153_R02C01_Red.idat 13676211 IDAT Red 12bfe7b1-a658-47c6-98f3-625f27ad343d cfdea2962c4bce127a72aa5f76aaa566 NA Primary Tumor C3N-02697-01 C3N-02697.miRNA-Seq.T C3N-02697 PDA miRNA-Seq tumor CPT0187780010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L004_R1_001.unaln.bam 155578609 BAM NA e70a32ad-5c49-4800-8705-82ed3489cc87 5192a8a730599bcce381c97ea0098e31 NA Primary Tumor C3N-02697-01 @@ -29185,8 +29230,11 @@ C3N-02730.WXS.N C3N-02730 HNSCC WXS blood_normal CPT0207930002 CPT0207930002.Who C3N-02730.WXS.N.hg38 C3N-02730 HNSCC WXS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wxs_gdc_realn.bam 57911338150 BAM NA 100e34c1-170c-4dbd-ad63-de812aa9378a 0da7c8abf72b6c66541fe31f241fc67c hg38 Blood Derived Normal C3N-02730-71 C3N-02730.WXS.T C3N-02730 HNSCC WXS tumor CPT0207870007 CPT0207870007.WholeExome.RP-1303.bam 23614581238 BAM NA 5767071e-3ec2-4107-ac66-a48505dcaeff 31fa7ce20515ffc1471e59cfcaa0057c hg19 Primary Tumor C3N-02730-01,C3N-02730-02 C3N-02730.WXS.T.hg38 C3N-02730 HNSCC WXS tumor CPT0207870007 ac6a9fd3-ca87-4867-94ab-03056f12936a_wxs_gdc_realn.bam 32180334608 BAM NA fb95b973-712c-4c79-ac6e-670018f48c16 e07b8af40a787dcb3cc099ff16358677 hg38 Primary Tumor C3N-02730-01,C3N-02730-02 +C3N-02754.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 73d8b0ea-db74-4c3e-87bb-7c0f0bd713d1.rna_seq.chimeric.gdc_realn.bam 261018696 BAM chimeric c97c63fa-0001-4046-b601-6b91f18af089 5f1e5285c7e1691828db64a462d46d9b hg38 Primary Tumor C3N-02754-01 +C3N-02754.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 73d8b0ea-db74-4c3e-87bb-7c0f0bd713d1.rna_seq.genomic.gdc_realn.bam 11301610832 BAM genomic ffa9587f-0d4e-4feb-afd6-88ab8955b8ce 32594a64fc605fb9e624bf754fbc39ae hg38 Primary Tumor C3N-02754-01 C3N-02754.RNA-Seq.R1.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R1_001.fastq.gz 3957470951 FASTQ NA 03aaf392-5fdd-4d5e-ad97-60c83afddd7f 905a737a0d4d2fb79fdc648c0bc26d46 NA Primary Tumor C3N-02754-01 C3N-02754.RNA-Seq.R2.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R2_001.fastq.gz 4464592514 FASTQ NA 821f4055-a8c6-4d89-8d28-0ef2b9a4f43d 74dfd9a890230ab233863336a92962c5 NA Primary Tumor C3N-02754-01 +C3N-02754.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 73d8b0ea-db74-4c3e-87bb-7c0f0bd713d1.rna_seq.transcriptome.gdc_realn.bam 9405451914 BAM transcriptome 0dbc9141-59e9-4db1-8985-6bf07a271043 6142bda166c54efa46017595c0d4b326 hg38 Primary Tumor C3N-02754-01 C3N-02757.MethArray.Green.A C3N-02757 LUAD Methylation Array tissue_normal CPT0183960006 203028200100_R06C01_Grn.idat 13676221 IDAT Green 39a494fe-695f-4cd3-a5cd-4df3cc50625b 3dada41ddcdf117c4f4ea0171e8b0120 NA Solid Tissue Normal C3N-02757-03 C3N-02757.MethArray.Green.T C3N-02757 LUAD Methylation Array tumor CPT0183940007 203219650177_R08C01_Grn.idat 13676221 IDAT Green 09af74c8-f13f-440e-89be-7f3cbabc3bfd ee81d572b394fc9276e2fe315b0b5931 NA Primary Tumor C3N-02757-01,C3N-02757-02 C3N-02757.MethArray.Red.A C3N-02757 LUAD Methylation Array tissue_normal CPT0183960006 203028200100_R06C01_Red.idat 13676221 IDAT Red ab7a09e7-d597-4400-ba2b-362b3303afcb b905e0b88466ee7b945612c3aeeabac0 NA Solid Tissue Normal C3N-02757-03 @@ -29305,8 +29353,11 @@ C3N-02764.WXS.N C3N-02764 LUAD WXS blood_normal CPT0184400002 CPT0184400002.Whol C3N-02764.WXS.N.hg38 C3N-02764 LUAD WXS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wxs_gdc_realn.bam 30085370723 BAM NA 1d9880d8-f0e9-4c28-ad1e-4b0c121db2bd 0028aaac7d03e158a55f23d246bbe187 hg38 Blood Derived Normal C3N-02764-71 C3N-02764.WXS.T C3N-02764 LUAD WXS tumor CPT0184350010 CPT0184350010.WholeExome.RP-1303.bam 21853775270 BAM NA 52e6c6d0-af75-452e-9698-8e594d4ac393 d7b3a8f6efe273f410a72995244e811e hg19 Primary Tumor C3N-02764-02,C3N-02764-03 C3N-02764.WXS.T.hg38 C3N-02764 LUAD WXS tumor CPT0184350010 eaea7605-ec9f-4634-979f-8b8346388609_wxs_gdc_realn.bam 29818447906 BAM NA f091ceb9-d929-4311-a99e-2d44ff3b90fd ef0d91d72ae453dfae75c441bbe45ce2 hg38 Primary Tumor C3N-02764-02,C3N-02764-03 +C3N-02765.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 c4214363-c57a-4e9d-8dfe-25360a58a333.rna_seq.chimeric.gdc_realn.bam 212009093 BAM chimeric 4f4350c2-b9bf-4456-a754-3f99734a9fb5 ae90d98152b71052d1f84c5e077ce542 hg38 Primary Tumor C3N-02765-02 +C3N-02765.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 c4214363-c57a-4e9d-8dfe-25360a58a333.rna_seq.genomic.gdc_realn.bam 8006351480 BAM genomic 22ec8346-a8c8-4802-9e0d-0d94f679bc5c 3588d6e909ed969aab0db433fbbc7722 hg38 Primary Tumor C3N-02765-02 C3N-02765.RNA-Seq.R1.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R1_001.fastq.gz 3476702923 FASTQ NA 6ed9b2ec-4ae8-40e3-a76c-a358dc9199c2 2596aa9862d456523691404159005811 NA Primary Tumor C3N-02765-02 C3N-02765.RNA-Seq.R2.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R2_001.fastq.gz 3883224355 FASTQ NA ec78d64b-29ef-457b-a8ef-e1159a06d851 208816663ed0a0d09f47972a77e21144 NA Primary Tumor C3N-02765-02 +C3N-02765.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 c4214363-c57a-4e9d-8dfe-25360a58a333.rna_seq.transcriptome.gdc_realn.bam 8879750105 BAM transcriptome 94e62b8e-5676-4f8e-8fc4-bc6ee1a2fbb1 c402ca91ee6747ac481d06435299b171 hg38 Primary Tumor C3N-02765-02 C3N-02768.MethArray.Green.A C3N-02768 PDA Methylation Array tissue_normal CPT0207990007 203561450106_R07C01_Grn.idat 13676216 IDAT Green 49258024-95b7-4330-a311-befb587a75c7 a6bc4e8856db96200598f29b8c3a695a NA Solid Tissue Normal C3N-02768-03 C3N-02768.MethArray.Green.T C3N-02768 PDA Methylation Array tumor CPT0207980008 203561450027_R01C01_Grn.idat 13676221 IDAT Green c7fb07b5-b1f8-4217-ad32-97e5e3787788 ec02ce59cdb9f077de9e219fd90f445b NA Primary Tumor C3N-02768-01,C3N-02768-02 C3N-02768.MethArray.Red.A C3N-02768 PDA Methylation Array tissue_normal CPT0207990007 203561450106_R07C01_Red.idat 13676216 IDAT Red 795efa34-5e8b-4459-8eca-bf7a61714855 a0ce30ecb5fc6d1d31914f0228d90fd2 NA Solid Tissue Normal C3N-02768-03 @@ -29818,8 +29869,11 @@ C3N-02929.WXS.N C3N-02929 LUAD WXS blood_normal CPT0184800002 CPT0184800002.Whol C3N-02929.WXS.N.hg38 C3N-02929 LUAD WXS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wxs_gdc_realn.bam 32190584639 BAM NA 864a3d57-5ac4-4c39-9e16-6720f7985633 a3600f5f8ec2bb38fb5fe319b5279719 hg38 Blood Derived Normal C3N-02929-31 C3N-02929.WXS.T C3N-02929 LUAD WXS tumor CPT0184740007 CPT0184740007.WholeExome.RP-1303.bam 18398967738 BAM NA 2a247459-970c-47fa-90a5-ae276f4f866a 51dc85176b266b75909efbc690216008 hg19 Primary Tumor C3N-02929-01,C3N-02929-02 C3N-02929.WXS.T.hg38 C3N-02929 LUAD WXS tumor CPT0184740007 94f45d68-628c-4d05-a253-85d4a19284e6_wxs_gdc_realn.bam 25768139029 BAM NA 39b71d68-828c-4a9c-a69e-ea091172401e e210fdd93dec879ae72190601fe05f92 hg38 Primary Tumor C3N-02929-01,C3N-02929-02 +C3N-02930.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 5c4a623e-49e5-40d3-9bfd-fef7cefd62ff.rna_seq.chimeric.gdc_realn.bam 244664501 BAM chimeric 19f3ec7a-c048-4376-a8d3-6b6811cd1d77 64621a06dcf90563b96b19fe88680cc4 hg38 Primary Tumor C3N-02930-01 +C3N-02930.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 5c4a623e-49e5-40d3-9bfd-fef7cefd62ff.rna_seq.genomic.gdc_realn.bam 12917232154 BAM genomic 87917c12-ed61-47b9-9b1c-8a49ef331085 ee69b9d3fe8246031bf4a1e98b01eaea hg38 Primary Tumor C3N-02930-01 C3N-02930.RNA-Seq.R1.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R1_001.fastq.gz 5164758172 FASTQ NA 6d20ad09-33cb-4eb3-bd90-a089cdac81f1 f742a976cf1c846ddd3c86d992d57247 NA Primary Tumor C3N-02930-01 C3N-02930.RNA-Seq.R2.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R2_001.fastq.gz 5580827454 FASTQ NA 606995fe-dd65-4648-bffa-23b2b9b37677 45d5f319c2b08d68bc599a927adfbde4 NA Primary Tumor C3N-02930-01 +C3N-02930.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 5c4a623e-49e5-40d3-9bfd-fef7cefd62ff.rna_seq.transcriptome.gdc_realn.bam 12824442131 BAM transcriptome ac28de93-34d3-45b1-8fb4-2180696cd1d9 06c3ac8bcafe9b85856a5fd8d48c732a hg38 Primary Tumor C3N-02930-01 C3N-02939.MethArray.Green.A C3N-02939 PDA Methylation Array tissue_normal CPT0208500007 203561620159_R07C01_Grn.idat 13676216 IDAT Green ecbf50fb-5c39-43e7-9f03-49129e62f019 635f52bf7e9e3a6f2a4f7caf84863cb3 NA Solid Tissue Normal C3N-02939-03 C3N-02939.MethArray.Green.T C3N-02939 PDA Methylation Array tumor CPT0208480008 203561450008_R01C01_Grn.idat 13676236 IDAT Green b16c21f2-afe6-4136-bf8d-19daee2e44fb 18ea732623ba16b582eaf932a8987b39 NA Primary Tumor C3N-02939-01,C3N-02939-02 C3N-02939.MethArray.Red.A C3N-02939 PDA Methylation Array tissue_normal CPT0208500007 203561620159_R07C01_Red.idat 13676216 IDAT Red b997ac95-9ad1-44d2-a8fa-08339c85018a 54d80fdf69f2ae5d341651a171e5f568 NA Solid Tissue Normal C3N-02939-03 @@ -30104,8 +30158,11 @@ C3N-02994.WXS.N C3N-02994 UCEC WXS blood_normal CPT0248020002 CPT0248020002.Whol C3N-02994.WXS.N.hg38 C3N-02994 UCEC WXS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wxs_gdc_realn.bam 31825877339 BAM NA 5461a238-4778-4bea-b005-ccd62f2a1459 4573a5b60490b1902652d76902467854 hg38 Blood Derived Normal C3N-02994-31 C3N-02994.WXS.T C3N-02994 UCEC WXS tumor CPT0248000006 CPT0248000006.WholeExome.RP-1303.bam 25292492968 BAM NA 3f76a382-98a6-47a7-9af7-6e011526ac0b 5681cada21afba089136ae230e932f38 hg19 Primary Tumor C3N-02994-01 C3N-02994.WXS.T.hg38 C3N-02994 UCEC WXS tumor CPT0248000006 6e080613-cb5b-47b4-a1cc-8fb789dd31da_wxs_gdc_realn.bam 35356118056 BAM NA ad9b2102-5fc0-4641-9c45-a00f6ea48f71 200fcf4ee5e25b476e0efe8a880351c0 hg38 Primary Tumor C3N-02994-01 +C3N-02996.RNA-Seq.chimeric.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 da94b236-5b10-4ec3-8505-62b90a163765.rna_seq.chimeric.gdc_realn.bam 396281832 BAM chimeric 4836d1e2-1cb5-4191-8f2a-0b5ce507dac6 9113f9cf8c9c544a34ca34d9931ddb46 hg38 Primary Tumor C3N-02996-02 +C3N-02996.RNA-Seq.genomic.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 da94b236-5b10-4ec3-8505-62b90a163765.rna_seq.genomic.gdc_realn.bam 15020742907 BAM genomic 074d5d45-df1e-45a0-b63c-ef6d8f681edd 56dc96f48dd6d169c288698e9c0cb279 hg38 Primary Tumor C3N-02996-02 C3N-02996.RNA-Seq.R1.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R1_001.fastq.gz 5528271075 FASTQ NA 7dd43710-d433-4d6d-a13f-00d1b502e41c d0a3efef5b9ccfad8a7aa58d6972fca5 NA Primary Tumor C3N-02996-02 C3N-02996.RNA-Seq.R2.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R2_001.fastq.gz 6280611223 FASTQ NA 0f5dcdca-0bd9-4440-8799-ed1e20b15054 055b437704d97a7ad3c6d2872457c419 NA Primary Tumor C3N-02996-02 +C3N-02996.RNA-Seq.transcriptome.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 da94b236-5b10-4ec3-8505-62b90a163765.rna_seq.transcriptome.gdc_realn.bam 11673930465 BAM transcriptome d610ee9a-6f5e-4868-bc25-49c3eb8ef5e4 e2be02d94767854c55c95b9d3a06bf8e hg38 Primary Tumor C3N-02996-02 C3N-02997.MethArray.Green.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Grn.idat 13676221 IDAT Green 04eb4f3f-1ac9-49b7-beac-ebc4364957c2 e22f79cd5400d6dac6f0c00be930cb3b NA Primary Tumor C3N-02997-01 .core core_DNA CORE_M8JZn2A Duplicate item: PDA Pilot - core-derived DNA C3N-02997.MethArray.Red.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Red.idat 13676221 IDAT Red 4e98b347-eed9-4724-8824-d32228a344f2 58520673375a163f28fdf8461d115f8f NA Primary Tumor C3N-02997-01 .core core_DNA CORE_M8JZn2A Duplicate item: PDA Pilot - core-derived DNA C3N-02997.miRNA-Seq.T C3N-02997 PDA miRNA-Seq tumor CPT0187880020 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM NA 5fb3c51f-52b9-41eb-b307-2369ec7c2914 55bd82edcadd64481ceda6ba757420a6 NA Primary Tumor C3N-02997-01 @@ -32543,15 +32600,21 @@ C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal CPT0248220002 2b68f934-9910- C3N-03791.WXS.T C3N-03791 GBM WXS tumor CPT0248160007 CPT0248160007.WholeExome.RP-1303.bam 20778146670 BAM NA 8db33fa4-0c4d-4d3a-bb9e-843f5d15f771 4e975d1938dcb9509fb5549017504b16 hg19 Primary Tumor C3N-03791-02,C3N-03791-03,C3N-03791-04 C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor CPT0248160007 a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM NA 93a0f29b-98ed-46e0-8f8b-03e4b9e363db 4e299fb0c0ffda2f64f8d43588fb878b hg38 Primary Tumor C3N-03791-02,C3N-03791-03,C3N-03791-04 C3N-03792.miRNA-Seq.T C3N-03792 GBM miRNA-Seq tumor CPT0292720009 201209_UNC32-K00270_0265_AHJ55WBBXY_TGACCA_S39_L007_R1_001.unaln.bam 244313348 BAM NA 3a95afa8-0cee-4b25-ae66-30901cbe1a34 8c8174ab15872e79256ee95566f44dd3 NA Primary Tumor C3N-03792-01 +C3N-03792.RNA-Seq.chimeric.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.chimeric.gdc_realn.bam 779780101 BAM chimeric 804b49ff-7c77-4347-8fef-43c8419ac760 29e8af6e7f3ecd1aadddadeb2d03b6b0 hg38 Primary Tumor C3N-03792-01 +C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.genomic.gdc_realn.bam 8629686101 BAM genomic d47c78f3-9fc1-498d-8274-b1e5a5bfeb8e d554cff37279480164c79b7787ab7c11 hg38 Primary Tumor C3N-03792-01 C3N-03792.RNA-Seq.R1.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ NA dc36ac00-dcf4-4714-9a22-e1b19e708b23 61a607b7d255f541e9c5b6f656a0be25 NA Primary Tumor C3N-03792-01 C3N-03792.RNA-Seq.R2.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ NA a7b201e1-89f6-4622-b6d8-a6271f6ab253 a0f10daed3f37e74ae2c5b7b15f29aee NA Primary Tumor C3N-03792-01 +C3N-03792.RNA-Seq.transcriptome.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.transcriptome.gdc_realn.bam 8242890032 BAM transcriptome 7abbdcb9-2516-4d8b-8446-ee0b4eedf9bd e5c514ab9dd429a96f7ba61e39c966c4 hg38 Primary Tumor C3N-03792-01 C3N-03792.WGS.N C3N-03792 GBM WGS blood_normal CPT0292740002 CPT0292740002.WholeGenome.RP-2158.bam 26554543598 BAM NA 9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4 89b222f52c79b6526d36d48ec8b6417f hg19 Blood Derived Normal C3N-03792-31 C3N-03792.WGS.T C3N-03792 GBM WGS tumor CPT0292720006 CPT0292720006.WholeGenome.RP-2158.bam 24306496119 BAM NA 53615a7a-6378-4b4f-804c-266c02f512f1 7aee45e623770016561c477b8774c8c3 hg19 Primary Tumor C3N-03792-01 C3N-03792.WXS.N C3N-03792 GBM WXS blood_normal CPT0292740002 CPT0292740002.WholeExome.RP-1303.bam 22254955383 BAM NA 8e2c02df-13d4-4874-9846-dcaad8847f04 cb8a03e9845b788b41fea8d6d1a13584 hg19 Blood Derived Normal C3N-03792-31 C3N-03792.WXS.T C3N-03792 GBM WXS tumor CPT0292720006 CPT0292720006.WholeExome.RP-1303.bam 25530290850 BAM NA abcd035f-5b1a-4bad-8a77-53f065088d4b 176ee3a16da362a8f7c128c9b3ae0494 hg19 Primary Tumor C3N-03792-01 C3N-03796.miRNA-Seq.T C3N-03796 GBM miRNA-Seq tumor CPT0285160009 201209_UNC32-K00270_0265_AHJ55WBBXY_TTAGGC_S40_L007_R1_001.unaln.bam 218247021 BAM NA c8ea651a-1acd-4d2d-9eeb-ba9b6b431dba da3281ca424a165f206878cc53ad5d31 NA Primary Tumor C3N-03796-01 +C3N-03796.RNA-Seq.chimeric.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.chimeric.gdc_realn.bam 860034440 BAM chimeric 25c9ee46-95ac-45c6-81f7-25bab3caa383 deb484fbbc9e534444c9f5445fe4e43f hg38 Primary Tumor C3N-03796-01 +C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.genomic.gdc_realn.bam 12050085530 BAM genomic e935d295-97b5-4d35-95af-4e173ffba7fb e3b1de8be9235b285234cfbc17156685 hg38 Primary Tumor C3N-03796-01 C3N-03796.RNA-Seq.R1.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ NA b454290d-cc02-4dba-9054-63f52ec8be2c da3b180947ae187d9f4913ac73b86a7e NA Primary Tumor C3N-03796-01 C3N-03796.RNA-Seq.R2.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ NA a8e13d55-81ac-4ea7-bdf8-4113326e7051 43fc642d3589af3fbc6fcefddf6b6ff3 NA Primary Tumor C3N-03796-01 +C3N-03796.RNA-Seq.transcriptome.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.transcriptome.gdc_realn.bam 11542142003 BAM transcriptome d9c92020-5474-49a3-b52c-f69dd3c5d7e3 0235172e31a30e7684fa882a29428260 hg38 Primary Tumor C3N-03796-01 C3N-03796.WGS.N C3N-03796 GBM WGS blood_normal CPT0285170002 CPT0285170002.WholeGenome.RP-2158.bam 26251928465 BAM NA 0886d2a8-bb29-46eb-98f3-46981d11faf8 e4159fbe70eac8dd22a81cc854a476b9 hg19 Blood Derived Normal C3N-03796-31 C3N-03796.WGS.T C3N-03796 GBM WGS tumor CPT0285160006 CPT0285160006.WholeGenome.RP-2158.bam 19793089386 BAM NA 79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a 446a1f2dfb79766993216a4de9d98a8a hg19 Primary Tumor C3N-03796-01 C3N-03796.WXS.N C3N-03796 GBM WXS blood_normal CPT0285170002 CPT0285170002.WholeExome.RP-1303.bam 21275282524 BAM NA 98c74117-697c-4f57-a461-30992c6f2d94 bd6742acc427ba0e41e07f371ca81cf6 hg19 Blood Derived Normal C3N-03796-31 @@ -33448,10 +33511,16 @@ C3N-04124.WXS.T C3N-04124 LSCC WXS tumor CPT0237970010 CPT0237970010.WholeExome. C3N-04124.WXS.T.hg38 C3N-04124 LSCC WXS tumor CPT0237970010 0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wxs_gdc_realn.bam 41431277364 BAM NA 80431699-b13f-4a48-bf2f-a30e17a2db53 59df658dc2387c073faf4cac2102c022 hg38 Primary Tumor C3N-04124-01,C3N-04124-02 C3N-04125.miRNA-Seq.A C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 201209_UNC32-K00270_0265_AHJ55WBBXY_CACCGG_S7_L007_R1_001.unaln.bam 235786181 BAM NA be8395f3-aa6b-4335-8fe3-8c714754796e c664bf44dab3c25a462fda24334fb153 NA Solid Tissue Normal C3N-04125-03 C3N-04125.miRNA-Seq.T C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTTCC_S25_L007_R1_001.unaln.bam 346270654 BAM NA cf729db9-03ae-4db8-a5c9-a9468f1fb0bd 69d9dac7d93933b53155578f2eaf0949 NA Primary Tumor C3N-04125-01,C3N-04125-02 +C3N-04125.RNA-Seq.chimeric.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 8af919ed-8f2e-41b9-9f60-27306d1b6a2f.rna_seq.chimeric.gdc_realn.bam 242803720 BAM chimeric a2e9d4c8-3cd4-4304-9cf1-36e6dc194a49 1a8bcf337772843946ad96535d2eb965 hg38 Solid Tissue Normal C3N-04125-03 +C3N-04125.RNA-Seq.chimeric.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 ae47cd36-85a9-485a-8d2e-e3667997d9fe.rna_seq.chimeric.gdc_realn.bam 271683582 BAM chimeric 332c1b44-90a3-4f82-bf39-5fd1305c0523 5ad12880136314b81dceaa6d8db7e727 hg38 Primary Tumor C3N-04125-01,C3N-04125-02 +C3N-04125.RNA-Seq.genomic.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 8af919ed-8f2e-41b9-9f60-27306d1b6a2f.rna_seq.genomic.gdc_realn.bam 6241771700 BAM genomic f541cf0b-f423-40c8-8d6d-77aff25e6c58 287759436a6df1f2d77df15399487104 hg38 Solid Tissue Normal C3N-04125-03 +C3N-04125.RNA-Seq.genomic.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 ae47cd36-85a9-485a-8d2e-e3667997d9fe.rna_seq.genomic.gdc_realn.bam 7567662699 BAM genomic 213254fc-5103-4912-8285-a63327e6c434 26512dabd2b4ca590ac2c95afa0d7a65 hg38 Primary Tumor C3N-04125-01,C3N-04125-02 C3N-04125.RNA-Seq.R1.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 3093237294 FASTQ NA 702ac9ca-7e6e-48ee-a162-13536b0378b6 8c682323deee4e1105e34700b9686249 NA Solid Tissue Normal C3N-04125-03 C3N-04125.RNA-Seq.R1.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ NA 4f5333d2-f5e8-4238-93cc-a43a1d94750e 65ad4f909f5752d94e987520e4809bea NA Primary Tumor C3N-04125-01,C3N-04125-02 C3N-04125.RNA-Seq.R2.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ NA 2fdfef3a-5922-4158-81fc-d9c462eb95e6 2a98d09075e8e73f0a532c0456946567 NA Solid Tissue Normal C3N-04125-03 C3N-04125.RNA-Seq.R2.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ NA e72caf0c-fb26-4d24-b284-a15ed7df1ed0 231c9af82aeb330b50ede11dfa74e3ca NA Primary Tumor C3N-04125-01,C3N-04125-02 +C3N-04125.RNA-Seq.transcriptome.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 8af919ed-8f2e-41b9-9f60-27306d1b6a2f.rna_seq.transcriptome.gdc_realn.bam 5927931378 BAM transcriptome 6cb73237-44e1-4d73-b4ae-a9e7ce0e505d c070f78fe65a1abb68b2accc364beb7f hg38 Solid Tissue Normal C3N-04125-03 +C3N-04125.RNA-Seq.transcriptome.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 ae47cd36-85a9-485a-8d2e-e3667997d9fe.rna_seq.transcriptome.gdc_realn.bam 12201017582 BAM transcriptome 61fe2b70-a720-426a-8fa5-29a2266fd619 903fe3ea5e6bc267002c4c7ee26474c1 hg38 Primary Tumor C3N-04125-01,C3N-04125-02 C3N-04125.WGS.N C3N-04125 LSCC WGS blood_normal CPT0330890002 CPT0330890002.WholeGenome.RP-2158.bam 23494158499 BAM NA 9090021d-c5a0-4767-bfbb-cbe66143f9a5 45f2e2d633cd65ea929e79119aeff56b hg19 Blood Derived Normal C3N-04125-31 C3N-04125.WGS.T C3N-04125 LSCC WGS tumor CPT0330800007 CPT0330800007.WholeGenome.RP-2158.bam 22713160615 BAM NA 7c9b9f19-1419-4c85-99ce-14da8c77a074 54121c197ba837f0a22c892f6c324dc5 hg19 Primary Tumor C3N-04125-01,C3N-04125-02 C3N-04125.WXS.A C3N-04125 LSCC WXS tissue_normal CPT0330820006 CPT0330820006.WholeExome.RP-1303.bam 19769989073 BAM NA 0acce9d3-f89c-4f80-ba9c-d7c92085faa4 0fc317a02e810dd1f178ca20ab0d43d9 hg19 Solid Tissue Normal C3N-04125-03 @@ -33504,10 +33573,16 @@ C3N-04127.WXS.T C3N-04127 LSCC WXS tumor CPT0238110010 CPT0238110010.WholeExome. C3N-04127.WXS.T.hg38 C3N-04127 LSCC WXS tumor CPT0238110010 c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wxs_gdc_realn.bam 26103182783 BAM NA e83f0336-0a89-4545-8479-d1a1dc01d99d 1d7fc59be3cfcfe4c76f93b51202d72c hg38 Primary Tumor C3N-04127-01,C3N-04127-02 C3N-04138.miRNA-Seq.A C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 201209_UNC32-K00270_0265_AHJ55WBBXY_CACGAT_S8_L006_R1_001.unaln.bam 335240834 BAM NA 8351eea0-1ee3-4047-b0da-6d7acbcad059 504f99927ceb546eb9d386d1bd163899 NA Solid Tissue Normal C3N-04138-03 C3N-04138.miRNA-Seq.T C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGTCA_S26_L007_R1_001.unaln.bam 265870736 BAM NA c395220d-eea6-4cf2-ac5e-247384b3e3aa e3ec0c5d350fe3bda4f994ffae358aa7 NA Primary Tumor C3N-04138-01,C3N-04138-02 +C3N-04138.RNA-Seq.chimeric.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 61a023d2-6580-4d1c-a81b-caa916cc9e58.rna_seq.chimeric.gdc_realn.bam 129316320 BAM chimeric e637ab16-2eaf-48b8-b816-a413fe0350b1 9dd4bd37dc248dd16e6f63504d7d18ef hg38 Solid Tissue Normal C3N-04138-03 +C3N-04138.RNA-Seq.chimeric.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 121ac9e0-95d7-432a-a6c5-5685a17fcc61.rna_seq.chimeric.gdc_realn.bam 267447119 BAM chimeric 932a29f6-12dc-48b1-8ac4-e34e250e6824 02ab667d861a3c5be4a94e531b04045e hg38 Primary Tumor C3N-04138-01,C3N-04138-02 +C3N-04138.RNA-Seq.genomic.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 61a023d2-6580-4d1c-a81b-caa916cc9e58.rna_seq.genomic.gdc_realn.bam 5777184391 BAM genomic 121859ca-335a-4a5c-a5fa-efd928baed24 3fbb13898b75bf0ad9b4fe7afe3ff8ba hg38 Solid Tissue Normal C3N-04138-03 +C3N-04138.RNA-Seq.genomic.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 121ac9e0-95d7-432a-a6c5-5685a17fcc61.rna_seq.genomic.gdc_realn.bam 8051045416 BAM genomic 31089825-221a-432f-8dee-1f60057dfaf6 28b5b4c6dc0523c1e104db2e5ad63b6e hg38 Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.RNA-Seq.R1.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R1_001.fastq.gz 2765503985 FASTQ NA 3e115e28-d175-4c14-ae40-3ccba22fab84 4c71f58330c7f6a52202857c7e0dc5be NA Solid Tissue Normal C3N-04138-03 C3N-04138.RNA-Seq.R1.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R1_001.fastq.gz 4031983308 FASTQ NA 3fc427a9-70d7-4182-a316-f528f080ccd8 ad91378fc02c95b5ab020ae3ca55e853 NA Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.RNA-Seq.R2.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R2_001.fastq.gz 2970136492 FASTQ NA 3b79257c-871d-4e0e-99e7-3024bc78d0e1 cf1c9299608146bd271bcbd02438864f NA Solid Tissue Normal C3N-04138-03 C3N-04138.RNA-Seq.R2.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R2_001.fastq.gz 4378549451 FASTQ NA 12eebe5b-3249-49a2-9394-4cb8c0151e21 57abdf95bfe917a4a985a0ae9e3f2131 NA Primary Tumor C3N-04138-01,C3N-04138-02 +C3N-04138.RNA-Seq.transcriptome.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 61a023d2-6580-4d1c-a81b-caa916cc9e58.rna_seq.transcriptome.gdc_realn.bam 5500332465 BAM transcriptome c017aba5-af7a-443d-8744-a9d136ae18db 9558453af0cb76d921f87c9b4c826628 hg38 Solid Tissue Normal C3N-04138-03 +C3N-04138.RNA-Seq.transcriptome.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 121ac9e0-95d7-432a-a6c5-5685a17fcc61.rna_seq.transcriptome.gdc_realn.bam 10946588776 BAM transcriptome 2401327f-e9ec-4627-8245-4b2d8ace0ab1 76c05f6e93ea635cbfe0ae414874c916 hg38 Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.WGS.N C3N-04138 LSCC WGS blood_normal CPT0331090002 CPT0331090002.WholeGenome.RP-2158.bam 21805976070 BAM NA dbc67567-3103-4284-80aa-b3f6bf3b0a65 811d1c1d9ef54ed3d57705133760d7ba hg19 Blood Derived Normal C3N-04138-31 C3N-04138.WGS.T C3N-04138 LSCC WGS tumor CPT0331000007 CPT0331000007.WholeGenome.RP-2158.bam 27914789343 BAM NA ef545b12-556c-4747-9567-1d471b7315f1 67d2d120b6842abc306d1d23010af99e hg19 Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.WholeExome.RP-1303.bam 28694395073 BAM NA 452ddcbf-da03-4208-8679-d7bc2f7a670f d04c9ffed3251467fe810e74c1d6c1e5 hg19 Blood Derived Normal C3N-04138-31 @@ -34012,10 +34087,16 @@ C3N-04382.WXS.T C3N-04382 LUAD WXS tumor CPT0240670006 CPT0240670006.WholeExome. C3N-04382.WXS.T.hg38 C3N-04382 LUAD WXS tumor CPT0240670006 ac407b00-f068-483f-b21e-9b5cada5daf4_wxs_gdc_realn.bam 30412646037 BAM NA daedaa8c-9345-4c69-89ac-1149fb350c8d 271eb566b9d3b292c77753a0a50d3bea hg38 Primary Tumor C3N-04382-02 C3N-04384.miRNA-Seq.A C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 201209_UNC32-K00270_0265_AHJ55WBBXY_CACTCA_S9_L006_R1_001.unaln.bam 312564513 BAM NA 03050bb5-8c8d-4d79-bcd9-e24049b495e8 acb8055863641048b3208226a2cbb43d NA Solid Tissue Normal C3N-04384-03 C3N-04384.miRNA-Seq.T C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 201209_UNC32-K00270_0265_AHJ55WBBXY_CCGTCC_S28_L007_R1_001.unaln.bam 270836115 BAM NA 5238c193-62a3-4b0a-9a58-8ea6ac5426a3 b485351d70d7e25ffcfb8fa2dcf5cfe5 NA Primary Tumor C3N-04384-01,C3N-04384-02 +C3N-04384.RNA-Seq.chimeric.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 39e1fc23-aca7-41ea-aae6-acb63b8f63f8.rna_seq.chimeric.gdc_realn.bam 142203260 BAM chimeric e0b88c91-a6d3-416b-a8b4-ac8d05278dd3 5c6c73c6303f8b6f0caad8a186c74ac4 hg38 Solid Tissue Normal C3N-04384-03 +C3N-04384.RNA-Seq.chimeric.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 8a596c1f-8e63-4414-a759-9b23228af451.rna_seq.chimeric.gdc_realn.bam 88692849 BAM chimeric 07a3eebf-8e29-477b-974a-7c46a79d8a64 02deae2d01917273ca1a59d18db74732 hg38 Primary Tumor C3N-04384-01,C3N-04384-02 +C3N-04384.RNA-Seq.genomic.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 39e1fc23-aca7-41ea-aae6-acb63b8f63f8.rna_seq.genomic.gdc_realn.bam 8046310678 BAM genomic a7eae7e8-da77-44d9-a8fe-cffaa7567842 d3012158dbff119194bb50349d14dbe2 hg38 Solid Tissue Normal C3N-04384-03 +C3N-04384.RNA-Seq.genomic.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 8a596c1f-8e63-4414-a759-9b23228af451.rna_seq.genomic.gdc_realn.bam 6228735243 BAM genomic c408e420-a390-4a46-a93c-a6d5d7a2a388 0c98265937ce84836de20c334eb5ca78 hg38 Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04384.RNA-Seq.R1.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R1_001.fastq.gz 4089256863 FASTQ NA b2be76d3-2780-4b37-ac3d-00b8275570a3 eada057439b909e6f2b92bf272dbd2b9 NA Solid Tissue Normal C3N-04384-03 C3N-04384.RNA-Seq.R1.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R1_001.fastq.gz 3161150739 FASTQ NA 2efb8b86-7963-494b-8cf8-070601581e4c 86a5337cd914c1c3d1d949e9668515f4 NA Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04384.RNA-Seq.R2.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R2_001.fastq.gz 4544440132 FASTQ NA 54e12111-0171-43cc-bc0a-2258d1d9baa8 b35dc57faa81321f6b37ed33a7f0166c NA Solid Tissue Normal C3N-04384-03 C3N-04384.RNA-Seq.R2.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R2_001.fastq.gz 3461343173 FASTQ NA e5cb1010-199f-44cf-b523-6fcade44dda5 2b05c5641b920de75ee424bfd51dfe22 NA Primary Tumor C3N-04384-01,C3N-04384-02 +C3N-04384.RNA-Seq.transcriptome.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 39e1fc23-aca7-41ea-aae6-acb63b8f63f8.rna_seq.transcriptome.gdc_realn.bam 8830465777 BAM transcriptome 5b8388fd-6981-4628-b05f-e189e6e7a95c f971afdb4039d704306a56532d4e86de hg38 Solid Tissue Normal C3N-04384-03 +C3N-04384.RNA-Seq.transcriptome.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 8a596c1f-8e63-4414-a759-9b23228af451.rna_seq.transcriptome.gdc_realn.bam 9540848532 BAM transcriptome 928bb7a3-9e8c-4775-9abf-1ed5b279d516 9fcb0933e6a16ff1e5d26c6ed876792e hg38 Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04384.WGS.N C3N-04384 LSCC WGS blood_normal CPT0332110002 CPT0332110002.WholeGenome.RP-2158.bam 26808051879 BAM NA f2d7d0be-9e8e-4b4b-a101-c7ad831863e8 5ac075b829135c6c5deef4f472bd5370 hg19 Blood Derived Normal C3N-04384-31 C3N-04384.WGS.T C3N-04384 LSCC WGS tumor CPT0331100007 CPT0331100007.WholeGenome.RP-2158.bam 24242977076 BAM NA d41e33d2-4f07-4464-af9e-85e6a9dfb964 1691ca01b9754b7e55fa40bc21f538b1 hg19 Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04384.WXS.A C3N-04384 LSCC WXS tissue_normal CPT0331120006 CPT0331120006.WholeExome.RP-1303.bam 22577166982 BAM NA 03269cbf-925c-400f-b4b9-0d456b569c63 88559a576d770747f2b69140d3bbfc15 hg19 Solid Tissue Normal C3N-04384-03 @@ -34023,10 +34104,16 @@ C3N-04384.WXS.N C3N-04384 LSCC WXS blood_normal CPT0332110002 CPT0332110002.Whol C3N-04384.WXS.T C3N-04384 LSCC WXS tumor CPT0331100007 CPT0331100007.WholeExome.RP-1303.bam 35107427907 BAM NA 99125eac-a48f-481c-8448-5dfe181de91e 2f0665ee17c9d7908c3f4fd2cbab4ba1 hg19 Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04445.miRNA-Seq.A C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 201209_UNC32-K00270_0265_AHJ55WBBXY_GACGAC_S12_L006_R1_001.unaln.bam 312384369 BAM NA 30035f59-cff3-4d34-b8e8-30a025a83390 bf73105d0dad34361199d7a119e81272 NA Solid Tissue Normal C3N-04445-03 C3N-04445.miRNA-Seq.T C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTCCGC_S34_L007_R1_001.unaln.bam 282240822 BAM NA 0fcbaf7f-cc5f-4ef4-9883-5dc7580149d3 2c575a96049594f54772d16d5b322652 NA Primary Tumor C3N-04445-01,C3N-04445-02 +C3N-04445.RNA-Seq.chimeric.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 67fb25c2-85e6-4487-a678-b7aaf9249979.rna_seq.chimeric.gdc_realn.bam 187889936 BAM chimeric 23e14b4a-f4e1-4057-9602-7838ea07144b b18495c44623fc520ab815c6e2471a43 hg38 Solid Tissue Normal C3N-04445-03 +C3N-04445.RNA-Seq.chimeric.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 6a817e30-484d-487d-b3b1-733e2b52c86a.rna_seq.chimeric.gdc_realn.bam 466425652 BAM chimeric a30637d8-82f4-4a9a-a0b0-d1ea5abd6ca0 2ddc8debfd91633acc55da84398860ef hg38 Primary Tumor C3N-04445-01,C3N-04445-02 +C3N-04445.RNA-Seq.genomic.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 67fb25c2-85e6-4487-a678-b7aaf9249979.rna_seq.genomic.gdc_realn.bam 6922769709 BAM genomic 217b560a-10ec-48c8-8b8f-c815f7e811c2 7a91ab47fb6ca5b5c2a3d547ce37a916 hg38 Solid Tissue Normal C3N-04445-03 +C3N-04445.RNA-Seq.genomic.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 6a817e30-484d-487d-b3b1-733e2b52c86a.rna_seq.genomic.gdc_realn.bam 8639991171 BAM genomic 205d3557-7f00-4e29-9271-bb08a0a7822b ed613b60d2232ebecb713d4771face8e hg38 Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04445.RNA-Seq.R1.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R1_001.fastq.gz 3367376011 FASTQ NA 799ebf27-76fc-441b-a909-acdd6ac3b457 6d2e0eaac75bfa4fd6b207a795196551 NA Solid Tissue Normal C3N-04445-03 C3N-04445.RNA-Seq.R1.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R1_001.fastq.gz 4184341827 FASTQ NA 765a6172-1c0f-4bad-b7a8-da971e31402d c34c1bb187a1f89d0f3f0e7426004123 NA Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04445.RNA-Seq.R2.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R2_001.fastq.gz 3560512926 FASTQ NA 2dd3b8ff-9556-4d0f-9a0d-32232c124842 bb36286628aa267a9bfa458c9bf2189a NA Solid Tissue Normal C3N-04445-03 C3N-04445.RNA-Seq.R2.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R2_001.fastq.gz 4696197419 FASTQ NA 843e3841-e979-4135-b0dc-1b7f97be3091 4118d1a7d47f3e932f2e8e35afb34524 NA Primary Tumor C3N-04445-01,C3N-04445-02 +C3N-04445.RNA-Seq.transcriptome.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 67fb25c2-85e6-4487-a678-b7aaf9249979.rna_seq.transcriptome.gdc_realn.bam 8574046841 BAM transcriptome 3833b441-a331-424f-abfc-081f16ab1315 794134c5a6a5695040e05ad63a74c4af hg38 Solid Tissue Normal C3N-04445-03 +C3N-04445.RNA-Seq.transcriptome.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 6a817e30-484d-487d-b3b1-733e2b52c86a.rna_seq.transcriptome.gdc_realn.bam 9272749074 BAM transcriptome 8eaf41e0-993b-4a01-9c85-e89a17353582 9b2c2df90efef241e23aa716f05142ba hg38 Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04445.WGS.N C3N-04445 LSCC WGS blood_normal CPT0332610002 CPT0332610002.WholeGenome.RP-2158.bam 25594571712 BAM NA 90cc388f-ca4b-4602-a62c-b307b6360204 a37a6c7948ce33d42067a3c5e8c0d883 hg19 Blood Derived Normal C3N-04445-31 C3N-04445.WGS.T C3N-04445 LSCC WGS tumor CPT0332520007 CPT0332520007.WholeGenome.RP-2158.bam 24290785613 BAM NA be2e7d9f-666e-440a-a149-803b96dddea3 8e8b53714a0be8143ce55baf1c8589af hg19 Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04445.WXS.A C3N-04445 LSCC WXS tissue_normal CPT0332540006 CPT0332540006.WholeExome.RP-1303.bam 24171857056 BAM NA a1158d75-1498-4464-a73d-2a70122effce 2ab357d0e2caa3ddeb9411059796be00 hg19 Solid Tissue Normal C3N-04445-03 @@ -34034,10 +34121,16 @@ C3N-04445.WXS.N C3N-04445 LSCC WXS blood_normal CPT0332610002 CPT0332610002.Whol C3N-04445.WXS.T C3N-04445 LSCC WXS tumor CPT0332520007 CPT0332520007.WholeExome.RP-1303.bam 23009029138 BAM NA 0fcec14e-e542-4457-a293-c1362302aef5 bd0a42d6b1fd1615e10ce189f411e855 hg19 Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04449.miRNA-Seq.A C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAATCG_S15_L006_R1_001.unaln.bam 269694284 BAM NA c60afc88-17dd-435a-bdd5-8ba29a39d31d 3c4f86006ee55496fb02135a91994736 NA Solid Tissue Normal C3N-04449-03 C3N-04449.miRNA-Seq.T C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGAAA_S35_L007_R1_001.unaln.bam 268242791 BAM NA 1fe4b221-de07-4a90-b9ec-d752c14c05c5 89c6febd3e39cd1539e2bb92b22975df NA Primary Tumor C3N-04449-01,C3N-04449-02 +C3N-04449.RNA-Seq.chimeric.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 1701e619-ffd7-4bc5-afc9-b38b56b81217.rna_seq.chimeric.gdc_realn.bam 253702565 BAM chimeric 42f1fb11-eca9-443e-a812-5fd26ed395a9 6d00330430b6da0a3e6fbfef06b73bd6 hg38 Solid Tissue Normal C3N-04449-03 +C3N-04449.RNA-Seq.chimeric.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 9f6ca44a-f71e-4f0c-811d-3b0f91679597.rna_seq.chimeric.gdc_realn.bam 449335824 BAM chimeric 18e9e32f-97c6-41c3-8ac2-8448b2c5c7df 8d3478d30e33bb520967f26b2af9434e hg38 Primary Tumor C3N-04449-01,C3N-04449-02 +C3N-04449.RNA-Seq.genomic.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 1701e619-ffd7-4bc5-afc9-b38b56b81217.rna_seq.genomic.gdc_realn.bam 9539190205 BAM genomic 02f87e0e-a651-48e8-a0de-c498e20488ad 2fdd503214df8ba6df81c11e79761586 hg38 Solid Tissue Normal C3N-04449-03 +C3N-04449.RNA-Seq.genomic.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 9f6ca44a-f71e-4f0c-811d-3b0f91679597.rna_seq.genomic.gdc_realn.bam 7695826216 BAM genomic d1ee9dd4-421e-4d1d-95fa-9bb66931526c 3b1d81d5d6b5b6872620edfdc1b7d5d3 hg38 Primary Tumor C3N-04449-01,C3N-04449-02 C3N-04449.RNA-Seq.R1.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R1_001.fastq.gz 4691535789 FASTQ NA a9eddd7c-e293-40f3-9bdc-ffe657565d83 5baa4bf04d9b48579ff426c04b58273b NA Solid Tissue Normal C3N-04449-03 C3N-04449.RNA-Seq.R1.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R1_001.fastq.gz 3838291981 FASTQ NA c10721f5-e95f-40de-8b5d-908d955cead2 4fb04572c6568299728933bdf9eea9fd NA Primary Tumor C3N-04449-01,C3N-04449-02 C3N-04449.RNA-Seq.R2.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R2_001.fastq.gz 4910314542 FASTQ NA b04a1909-634a-4fce-8ed4-9224e26ccbda f4da99cbea5205f9f854f342319c4487 NA Solid Tissue Normal C3N-04449-03 C3N-04449.RNA-Seq.R2.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R2_001.fastq.gz 4245083460 FASTQ NA 1c1d820c-2e0a-449d-8d17-d6c10f2f732b 41be9a98fed6d4fdb7f44a3fed019329 NA Primary Tumor C3N-04449-01,C3N-04449-02 +C3N-04449.RNA-Seq.transcriptome.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 1701e619-ffd7-4bc5-afc9-b38b56b81217.rna_seq.transcriptome.gdc_realn.bam 11220089271 BAM transcriptome 2dc2733a-8366-44b5-8614-f01555f9d3e8 a7c0100b01cbf7822560c4527d9a6cfd hg38 Solid Tissue Normal C3N-04449-03 +C3N-04449.RNA-Seq.transcriptome.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 9f6ca44a-f71e-4f0c-811d-3b0f91679597.rna_seq.transcriptome.gdc_realn.bam 10179198963 BAM transcriptome afebf724-f81c-4462-8ca4-b1c2d642d7f6 605f949bd35dac293f95041d5acabbbe hg38 Primary Tumor C3N-04449-01,C3N-04449-02 C3N-04449.WGS.N C3N-04449 LSCC WGS blood_normal CPT0332810002 CPT0332810002.WholeGenome.RP-2158.bam 30070111755 BAM NA ce8a6ac8-7c3f-454e-848e-326805f4d3ee ecdba8c3304b730fea4e2c8f4f5a659c hg19 Blood Derived Normal C3N-04449-31 C3N-04449.WGS.T C3N-04449 LSCC WGS tumor CPT0332720007 CPT0332720007.WholeGenome.RP-2158.bam 25102344713 BAM NA f8ac2ef3-76ea-4c5b-9a94-6cb3fed3911d ade87a169eb9b5d4b732d42a70ff284e hg19 Primary Tumor C3N-04449-01,C3N-04449-02 C3N-04449.WXS.A C3N-04449 LSCC WXS tissue_normal CPT0332740006 CPT0332740006.WholeExome.RP-1303.bam 36413072593 BAM NA 37217e58-6f6e-41b0-bf22-e64d15a5dda7 bdb5ceb6cce98eedd9396e01e757c241 hg19 Solid Tissue Normal C3N-04449-03 @@ -34129,20 +34222,32 @@ C3N-04611.WXS.T C3N-04611 HNSCC WXS tumor CPT0261520006 CPT0261520006.WholeExome C3N-04611.WXS.T.hg38 C3N-04611 HNSCC WXS tumor CPT0261520006 6d4a2a29-c227-4878-8bea-90a054f4950b_wxs_gdc_realn.bam 32948781341 BAM NA 35f0b6cb-aa7f-4451-a0e3-7066a248c27e 0752a30202fe2b025af17e24eb9c71c3 hg38 Primary Tumor C3N-04611-01 C3N-04660.miRNA-Seq.A C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 201209_UNC32-K00270_0265_AHJ55WBBXY_TACAGC_S16_L006_R1_001.unaln.bam 260476728 BAM NA 88b5f70b-367a-4f1c-a4f1-b93d124a7a53 ba4f96f8dee941dcd49495a6cfda59d3 NA Solid Tissue Normal C3N-04660-03 C3N-04660.miRNA-Seq.T C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGGCC_S36_L007_R1_001.unaln.bam 218098122 BAM NA de4eaf61-8ff7-41a2-b6fb-3e3979ab2f01 68d56134bd3c76894af21938c8635115 NA Primary Tumor C3N-04660-01,C3N-04660-02 +C3N-04660.RNA-Seq.chimeric.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 0dd4cba1-de4e-4c31-9563-bced7adbb067.rna_seq.chimeric.gdc_realn.bam 394347740 BAM chimeric 1765e2a4-fcce-4904-a7b7-6118ea824ee1 80bd625fdadea396db84d3668295b83a hg38 Solid Tissue Normal C3N-04660-03 +C3N-04660.RNA-Seq.chimeric.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 c7eb7e1b-a086-49d9-9299-ed720b572417.rna_seq.chimeric.gdc_realn.bam 416708427 BAM chimeric 78e580af-a9bb-4b85-b517-fc0da9ea706a 9af8dae1e4787e05222ff9d9f0e17cb3 hg38 Primary Tumor C3N-04660-01,C3N-04660-02 +C3N-04660.RNA-Seq.genomic.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 0dd4cba1-de4e-4c31-9563-bced7adbb067.rna_seq.genomic.gdc_realn.bam 7709239435 BAM genomic d5e365c8-e71a-4545-aa2a-6042fee8b358 8f00e0051e5d400537d5bae5120ece63 hg38 Solid Tissue Normal C3N-04660-03 +C3N-04660.RNA-Seq.genomic.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 c7eb7e1b-a086-49d9-9299-ed720b572417.rna_seq.genomic.gdc_realn.bam 7116938071 BAM genomic 1a45da6a-f975-486d-8193-24de519d59ee 7b44d4f88563ae3efd3fcd4795215303 hg38 Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04660.RNA-Seq.R1.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R1_001.fastq.gz 3909228727 FASTQ NA f2c7e58e-88ab-4532-a94c-c6df1b052c8e 3b209090e61165ca225e4d898ded19d6 NA Solid Tissue Normal C3N-04660-03 C3N-04660.RNA-Seq.R1.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R1_001.fastq.gz 3491128050 FASTQ NA f040cd6f-bca4-4219-90ce-79bb548ff258 95c536a656e0f8bc39014ff12a0ab182 NA Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04660.RNA-Seq.R2.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R2_001.fastq.gz 4232579809 FASTQ NA d1ebe51b-7462-45de-af90-e037d6289775 df00fdd9d9a6ca33f8f1dfd90aa9aac9 NA Solid Tissue Normal C3N-04660-03 C3N-04660.RNA-Seq.R2.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R2_001.fastq.gz 3876810533 FASTQ NA 1ffd9fe7-3bef-45ce-a22d-76d05d3429a6 d29a67badd82392e680792d342f91748 NA Primary Tumor C3N-04660-01,C3N-04660-02 +C3N-04660.RNA-Seq.transcriptome.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 0dd4cba1-de4e-4c31-9563-bced7adbb067.rna_seq.transcriptome.gdc_realn.bam 8219293811 BAM transcriptome b43fe8a2-b8a0-4eca-af9b-8f9ce636d99f 221b7ede69b194ea0ba01b99c0ab439e hg38 Solid Tissue Normal C3N-04660-03 +C3N-04660.RNA-Seq.transcriptome.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 c7eb7e1b-a086-49d9-9299-ed720b572417.rna_seq.transcriptome.gdc_realn.bam 9400241872 BAM transcriptome e41f3b4c-bad0-446d-999f-f6fe21b0a0e9 4636d23b928ecd5aa3975e2556f80c4c hg38 Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04660.WGS.N C3N-04660 LSCC WGS blood_normal CPT0333210002 CPT0333210002.WholeGenome.RP-2158.bam 23692882633 BAM NA 702de41c-f45c-4111-bad1-03264dd01574 e0dce14acb2ece32b622500e04cfd275 hg19 Blood Derived Normal C3N-04660-31 C3N-04660.WGS.T C3N-04660 LSCC WGS tumor CPT0333120007 CPT0333120007.WholeGenome.RP-2158.bam 24834974591 BAM NA a8ef9313-a212-407a-a2a4-ef6d38afbda3 fda47cdece3bca876455334e8a35083e hg19 Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04660.WXS.N C3N-04660 LSCC WXS blood_normal CPT0333210002 CPT0333210002.WholeExome.RP-1303.bam 25664685884 BAM NA d3ec620f-eb84-4885-98fc-935460498cff af4e1c223334c6497109b934e3fc6bf3 hg19 Blood Derived Normal C3N-04660-31 C3N-04660.WXS.T C3N-04660 LSCC WXS tumor CPT0333120007 CPT0333120007.WholeExome.RP-1303.bam 38570652273 BAM NA e5fb9fac-cb74-46c0-b33f-c532c79635d0 944587b3b5e90a10f1777583d075c726 hg19 Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04662.miRNA-Seq.A C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TATAAT_S17_L006_R1_001.unaln.bam 347846414 BAM NA 8bc072f2-b507-4b35-8c52-1d329d6cac8b a570b39431a5e2cd7e688b02796d9aa3 NA Solid Tissue Normal C3N-04662-03 C3N-04662.miRNA-Seq.T C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTTTCG_S37_L007_R1_001.unaln.bam 280025904 BAM NA 4ba3830c-642a-46f5-bdac-b0bca79f15f7 72fa1578a807859c05eff650aea233ec NA Primary Tumor C3N-04662-01,C3N-04662-02 +C3N-04662.RNA-Seq.chimeric.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 a86b88db-00db-4033-8636-e09f8dd14629.rna_seq.chimeric.gdc_realn.bam 194251372 BAM chimeric 89ad3910-6025-4dac-8812-daacde39ab8d f16fbd050d497ab3168372dd8280f649 hg38 Solid Tissue Normal C3N-04662-03 +C3N-04662.RNA-Seq.chimeric.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 9a720904-1ea0-45ea-ac22-92e8a89b9932.rna_seq.chimeric.gdc_realn.bam 375697393 BAM chimeric 9d6db7ad-5db6-47a1-b78d-60898ce31136 e989560b09542b5883ba6d1fa6690016 hg38 Primary Tumor C3N-04662-01,C3N-04662-02 +C3N-04662.RNA-Seq.genomic.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 a86b88db-00db-4033-8636-e09f8dd14629.rna_seq.genomic.gdc_realn.bam 6365746832 BAM genomic 185b1986-72d6-4841-b0fc-3f86d6e1aef3 33e1221e474aa9b10a4ee8e2e4f2f3c8 hg38 Solid Tissue Normal C3N-04662-03 +C3N-04662.RNA-Seq.genomic.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 9a720904-1ea0-45ea-ac22-92e8a89b9932.rna_seq.genomic.gdc_realn.bam 8167623697 BAM genomic 98793a44-38e6-48fb-a4ba-5d2b713584a6 3ca884e7bc5d661e9d968c5af3b2b1f1 hg38 Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04662.RNA-Seq.R1.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R1_001.fastq.gz 2954081817 FASTQ NA 9d3d2907-4b0b-420d-bbaa-33de825bd2d8 4a84e8d1cdea12f929bcfe60d3354e1c NA Solid Tissue Normal C3N-04662-03 C3N-04662.RNA-Seq.R1.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4078146955 FASTQ NA b0910594-ba39-4b73-9c92-87889032b3df 9f0a777b86beabfc81b55a2b5b15f100 NA Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04662.RNA-Seq.R2.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R2_001.fastq.gz 3225243949 FASTQ NA cf2fb946-7a89-4be7-bcf1-3dbefd88c208 37822a8be538071c3dc8c4047ae26f6f NA Solid Tissue Normal C3N-04662-03 C3N-04662.RNA-Seq.R2.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4470105933 FASTQ NA 18d596f5-5d39-4ae3-9538-45967468203f 0c32737f44323b86dceffff3efbdbf54 NA Primary Tumor C3N-04662-01,C3N-04662-02 +C3N-04662.RNA-Seq.transcriptome.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 a86b88db-00db-4033-8636-e09f8dd14629.rna_seq.transcriptome.gdc_realn.bam 7586054866 BAM transcriptome 20062646-c1b6-475c-bd2c-b1661c4cf77c 0346a18661fe8c800a9f45ea07b71aed hg38 Solid Tissue Normal C3N-04662-03 +C3N-04662.RNA-Seq.transcriptome.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 9a720904-1ea0-45ea-ac22-92e8a89b9932.rna_seq.transcriptome.gdc_realn.bam 10163355494 BAM transcriptome b4141715-63d4-4633-ac3d-8f216058096b 02634f7cc19be1a863cb8cf010f2cd72 hg38 Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04662.WGS.N C3N-04662 LSCC WGS blood_normal CPT0333410002 CPT0333410002.WholeGenome.RP-2158.bam 26911219456 BAM NA 54e8f619-de40-4efc-95bb-9de7a2f02084 311500a9c6cb2c7bc448d0603c361e47 hg19 Blood Derived Normal C3N-04662-31 C3N-04662.WGS.T C3N-04662 LSCC WGS tumor CPT0333320007 CPT0333320007.WholeGenome.RP-2158.bam 26925350380 BAM NA 7293efa6-b4c4-4660-a400-79126a9f9892 f3cd1fe56e4224dc173f2d364e5b373f hg19 Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04662.WXS.A C3N-04662 LSCC WXS tissue_normal CPT0333340006 CPT0333340006.WholeExome.RP-1303.bam 20135077034 BAM NA 64f68efa-1415-4a46-8409-7317be80478f 59b80255abd1ab699b9318b370323755 hg19 Solid Tissue Normal C3N-04662-03 @@ -34150,10 +34255,16 @@ C3N-04662.WXS.N C3N-04662 LSCC WXS blood_normal CPT0333410002 CPT0333410002.Whol C3N-04662.WXS.T C3N-04662 LSCC WXS tumor CPT0333320007 CPT0333320007.WholeExome.RP-1303.bam 21841404950 BAM NA eeeb20d0-fdb0-41bc-81e1-578860b3547d e1d78889e876ac79d28ba47f70b4582a hg19 Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04665.miRNA-Seq.A C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 201209_UNC32-K00270_0265_AHJ55WBBXY_TCATTC_S18_L007_R1_001.unaln.bam 212886104 BAM NA e5b33b26-0938-42cb-bca4-48a6dd9cdbf0 6d27bd2519fe34b6d1e2ba6f1b4cdb60 NA Solid Tissue Normal C3N-04665-03 C3N-04665.miRNA-Seq.T C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 201209_UNC32-K00270_0265_AHJ55WBBXY_CGTACG_S11_L006_R1_001.unaln.bam 304496074 BAM NA 1980e0cd-8f60-43b9-9018-4307eefd41c5 ee69005ce83b9c76bbe077059577adb4 NA Primary Tumor C3N-04665-01,C3N-04665-02 +C3N-04665.RNA-Seq.chimeric.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 208c3c05-e8bc-49e0-8261-1c525c2d8a7e.rna_seq.chimeric.gdc_realn.bam 255939600 BAM chimeric b40b6852-96c2-4a05-969b-183f8a99553a 65dbdabe3e23bf53c362e92caa49439e hg38 Solid Tissue Normal C3N-04665-03 +C3N-04665.RNA-Seq.chimeric.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 3f07253a-86e5-4704-9d43-c4cf4dcb2d33.rna_seq.chimeric.gdc_realn.bam 296962535 BAM chimeric 51e0e95a-6894-4e70-a472-372761295b39 03731605b359bd25eec666859ed1998b hg38 Primary Tumor C3N-04665-01,C3N-04665-02 +C3N-04665.RNA-Seq.genomic.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 208c3c05-e8bc-49e0-8261-1c525c2d8a7e.rna_seq.genomic.gdc_realn.bam 7658898534 BAM genomic 7972fa5a-5222-4125-b762-ba2ca884780e 0af498865ce8eac3b3cff00d99ea148f hg38 Solid Tissue Normal C3N-04665-03 +C3N-04665.RNA-Seq.genomic.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 3f07253a-86e5-4704-9d43-c4cf4dcb2d33.rna_seq.genomic.gdc_realn.bam 6600247607 BAM genomic c41d1405-93d2-404c-8993-7d844e2961a8 98b1e12a89ae64d730d1b1140fb1d932 hg38 Primary Tumor C3N-04665-01,C3N-04665-02 C3N-04665.RNA-Seq.R1.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R1_001.fastq.gz 3747629000 FASTQ NA 1db3ad6b-515d-4fc3-ab1b-ae3fabdcc438 dc197baca7f1b32f20d197ce286022f1 NA Solid Tissue Normal C3N-04665-03 C3N-04665.RNA-Seq.R1.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 3282015159 FASTQ NA 81481aff-e1d8-45ab-8755-17a61ff5915c 1cf9728e014a5efe458e0094a9e0325f NA Primary Tumor C3N-04665-01,C3N-04665-02 C3N-04665.RNA-Seq.R2.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R2_001.fastq.gz 4142893674 FASTQ NA f2a6a325-7b60-442e-8b7c-397a990da879 1ab9dc07bb33783a726d1db8ba9f8450 NA Solid Tissue Normal C3N-04665-03 C3N-04665.RNA-Seq.R2.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3724470408 FASTQ NA a2b99b44-8278-422c-addc-0cbab637d56d 28a78fa66492a53a138f310ef7a03685 NA Primary Tumor C3N-04665-01,C3N-04665-02 +C3N-04665.RNA-Seq.transcriptome.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 208c3c05-e8bc-49e0-8261-1c525c2d8a7e.rna_seq.transcriptome.gdc_realn.bam 8991822357 BAM transcriptome 759759a3-89e2-4d77-b249-02e912276054 b82bb1b54790e6a861a42fafa61efd28 hg38 Solid Tissue Normal C3N-04665-03 +C3N-04665.RNA-Seq.transcriptome.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 3f07253a-86e5-4704-9d43-c4cf4dcb2d33.rna_seq.transcriptome.gdc_realn.bam 8805607983 BAM transcriptome 4e3bd350-0059-4848-9efd-fd7210198dfb 16d4447af510a54ea0cbc6fe16401d07 hg38 Primary Tumor C3N-04665-01,C3N-04665-02 C3N-04665.WGS.N C3N-04665 LSCC WGS blood_normal CPT0333610002 CPT0333610002.WholeGenome.RP-2158.bam 25078124633 BAM NA 7820c333-a662-4225-82e4-4b2e5df506bc 6b07674da95dc32561c228bb6cc0f8f8 hg19 Blood Derived Normal C3N-04665-31 C3N-04665.WGS.T C3N-04665 LSCC WGS tumor CPT0333520007 CPT0333520007.WholeGenome.RP-2158.bam 25184916025 BAM NA 4792ea11-97a4-4ec9-a4eb-4d9ff70d9070 b00ce85e4028eee427dd042e1cf1378c hg19 Primary Tumor C3N-04665-01,C3N-04665-02 C3N-04665.WXS.A C3N-04665 LSCC WXS tissue_normal CPT0333540006 CPT0333540006.WholeExome.RP-1303.bam 26094518596 BAM NA 3159bf0c-cd3d-47e3-847d-350b790751e0 9a5ce87dfbc7a7950249f0fb9c874475 hg19 Solid Tissue Normal C3N-04665-03 @@ -34211,8 +34322,11 @@ C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal CPT0293620002 04d7ff8e-1924- C3N-04686.WXS.T C3N-04686 GBM WXS tumor CPT0293570006 CPT0293570006.WholeExome.RP-1303.bam 21163461417 BAM NA 4d9a0556-b68f-4487-ada6-7909db5d3e88 e8df2a60a50726cd0d820deadffe7504 hg19 Primary Tumor C3N-04686-04 C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor CPT0293570006 c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM NA 349a677b-4595-415c-b4ba-774a966c92c7 72aa2a7252b4732a09b0289d0e32a04e hg38 Primary Tumor C3N-04686-04 C3N-04687.miRNA-Seq.T C3N-04687 GBM miRNA-Seq tumor CPT0293640009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACAGTG_S22_L007_R1_001.unaln.bam 208503100 BAM NA 2cf5871c-e227-4a62-a47f-4f7b400d3b9f 2f4d1d2017eb4ebd438b63f8b0ee945d NA Primary Tumor C3N-04687-02 +C3N-04687.RNA-Seq.chimeric.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.chimeric.gdc_realn.bam 616236730 BAM chimeric 44cc36ce-5251-410a-9032-7f28ff2c604d 6a89dabf7060d16f434ebbf5382e4625 hg38 Primary Tumor C3N-04687-02 +C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.genomic.gdc_realn.bam 11863165641 BAM genomic 16e82122-8071-438c-9845-599931d9b669 6a686e0926d3b74a408000e19dbf6a85 hg38 Primary Tumor C3N-04687-02 C3N-04687.RNA-Seq.R1.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ NA 5813883a-bd76-4717-b554-85107c414177 42954edf1fc37e2a6a1190c29ca3837d NA Primary Tumor C3N-04687-02 C3N-04687.RNA-Seq.R2.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ NA 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 77cd363131876e03e6634aa1c5909f27 NA Primary Tumor C3N-04687-02 +C3N-04687.RNA-Seq.transcriptome.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.transcriptome.gdc_realn.bam 11190342929 BAM transcriptome 97637600-9261-41d1-8efc-0b8c611b5007 32782c735dc89d2747d27ee5e7fd6c66 hg38 Primary Tumor C3N-04687-02 C3N-04687.WGS.N C3N-04687 GBM WGS blood_normal CPT0293690002 CPT0293690002.WholeGenome.RP-2158.bam 27529329254 BAM NA 5168a4c1-d7bf-4315-9416-7ca03219f455 676212b8c52b9fca93a8b6f6abd90b97 hg19 Blood Derived Normal C3N-04687-31 C3N-04687.WGS.T C3N-04687 GBM WGS tumor CPT0293640006 CPT0293640006.WholeGenome.RP-2158.bam 24215834475 BAM NA 78c0a239-fa60-437f-9f48-deed8e1bdf75 329a9eaead33c085c72a82db6584a92a hg19 Primary Tumor C3N-04687-02 C3N-04687.WXS.N C3N-04687 GBM WXS blood_normal CPT0293690002 CPT0293690002.WholeExome.RP-1303.bam 25262694720 BAM NA 201962bb-0a08-42ae-bbeb-70d26f8f2168 a0c1563bf195301a45abb81d022b7c02 hg19 Blood Derived Normal C3N-04687-31 @@ -34252,8 +34366,11 @@ C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal CPT0293830004 b996ab8e-ae14- C3N-04693.WXS.T C3N-04693 GBM WXS tumor CPT0293800006 CPT0293800006.WholeExome.RP-1303.bam 48569729300 BAM NA 3791b6fc-e492-439c-bf45-0095fcd1a11f 948fa883cd45db3a29f88947fd354182 hg19 Primary Tumor C3N-04693-01 C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor CPT0293800006 27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM NA e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e f6f4cfcc6be0b8fdc2073a9c6ce23d7a hg38 Primary Tumor C3N-04693-01 C3N-04695.miRNA-Seq.T C3N-04695 GBM miRNA-Seq tumor CPT0293870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GCCAAT_S31_L007_R1_001.unaln.bam 254636701 BAM NA 116a4933-a918-4b62-be94-f8dd406d55e0 2bad041d5acecccb2f27be5e41b4b947 NA Primary Tumor C3N-04695-03 +C3N-04695.RNA-Seq.chimeric.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.chimeric.gdc_realn.bam 545842225 BAM chimeric fa1e26d1-7a63-4b3f-a17a-e1947f9a6966 be9543401e2a9f315037fd2946dd4832 hg38 Primary Tumor C3N-04695-03 +C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.genomic.gdc_realn.bam 9685136847 BAM genomic c892103c-2215-46fb-8cb8-469ddcc483ca 79e29f7802cc9c44ce1120f7c803c38f hg38 Primary Tumor C3N-04695-03 C3N-04695.RNA-Seq.R1.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ NA 192aec81-2351-4e27-88b7-36549fbf6d8d 72a7715debc655f045322ddaa760a31c NA Primary Tumor C3N-04695-03 C3N-04695.RNA-Seq.R2.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ NA 37a18500-3aa6-42ad-99ed-e1c041194c48 147f923d871392c37cbf9babe53dbf9f NA Primary Tumor C3N-04695-03 +C3N-04695.RNA-Seq.transcriptome.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.transcriptome.gdc_realn.bam 9780473207 BAM transcriptome 318149c7-6793-47c7-bc75-37ddc5ced76a 43328fa82df72d192004ece483f909f3 hg38 Primary Tumor C3N-04695-03 C3N-04695.WGS.N C3N-04695 GBM WGS blood_normal CPT0293890002 CPT0293890002.WholeGenome.RP-2158.bam 22732109080 BAM NA 6adf632a-fedb-456f-aad9-67b5c4cd8a7a 829513d0bef0cdc6e691e191e7eccb84 hg19 Blood Derived Normal C3N-04695-31 C3N-04695.WGS.T C3N-04695 GBM WGS tumor CPT0293870006 CPT0293870006.WholeGenome.RP-2158.bam 27471116027 BAM NA 6dd2b329-91e9-4246-ba46-b15996db89b0 0b1fcd14a9a7e467ea2bc27ff06adda0 hg19 Primary Tumor C3N-04695-03 C3N-04695.WXS.N C3N-04695 GBM WXS blood_normal CPT0293890002 CPT0293890002.WholeExome.RP-1303.bam 23131222441 BAM NA af079cca-f58b-42c0-94d4-28e5d16b9a3e a390bf9e8a30b10b5640a39f9f0f1fa3 hg19 Blood Derived Normal C3N-04695-31 @@ -34305,10 +34422,16 @@ C3N-04713.WXS.T C3N-04713 LSCC WXS tumor CPT0313120006 CPT0313120006.WholeExome. C3N-04713.WXS.T.hg38 C3N-04713 LSCC WXS tumor CPT0313120006 12d287b2-1cfd-443b-8d67-6b536b763eb1_wxs_gdc_realn.bam 26695712376 BAM NA 59eb1c45-19a9-4fc2-a7f7-b7849e636b98 6b5d3b775fba6faec274b850763c1a29 hg38 Primary Tumor C3N-04713-06 C3N-04944.miRNA-Seq.A C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 201209_UNC32-K00270_0265_AHJ55WBBXY_CAACTA_S6_L006_R1_001.unaln.bam 267496423 BAM NA d4767b7c-b3ae-42da-a8c3-9ed5c8bef1f4 99ab9a7993f5880d468033cf65176d22 NA Solid Tissue Normal C3N-04944-03 C3N-04944.miRNA-Seq.T C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 201209_UNC32-K00270_0265_AHJ55WBBXY_GAGTGG_S13_L006_R1_001.unaln.bam 288371914 BAM NA 634bdeb0-031c-47e5-b8be-213580b45fe2 6fa4fdfb2ba4fb937bdfc01475878621 NA Primary Tumor C3N-04944-01 +C3N-04944.RNA-Seq.chimeric.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 67f56a65-fc7f-4a65-8423-207471b7254b.rna_seq.chimeric.gdc_realn.bam 330301814 BAM chimeric c35e8365-c5e6-4999-b645-076ae75c4f0c b9e8c16346296d9e0b71d87361fed88b hg38 Solid Tissue Normal C3N-04944-03 +C3N-04944.RNA-Seq.chimeric.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 46c88849-3ba7-4857-8369-fe6bf3bedccd.rna_seq.chimeric.gdc_realn.bam 186732670 BAM chimeric b293a60d-728e-49f6-9df3-e968dadf4855 fe0e5537a74016a24f223f58903b52dc hg38 Primary Tumor C3N-04944-01 +C3N-04944.RNA-Seq.genomic.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 67f56a65-fc7f-4a65-8423-207471b7254b.rna_seq.genomic.gdc_realn.bam 7910913635 BAM genomic 662e7773-57fb-496f-a81b-ae55d1b07181 75bed4527aff8dc28077e4d06d426c0b hg38 Solid Tissue Normal C3N-04944-03 +C3N-04944.RNA-Seq.genomic.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 46c88849-3ba7-4857-8369-fe6bf3bedccd.rna_seq.genomic.gdc_realn.bam 7613532927 BAM genomic f1705b6b-dc27-41d2-9589-7e738fe9172b 44b4c74e43913fd8e03d2d594c5b37b5 hg38 Primary Tumor C3N-04944-01 C3N-04944.RNA-Seq.R1.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3962578034 FASTQ NA c9343469-52cf-4565-80db-90ebdeaa13b4 d6dfa4afa1d3f1d39beedc64d9f9c26f NA Solid Tissue Normal C3N-04944-03 C3N-04944.RNA-Seq.R1.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 4003847490 FASTQ NA ebd08a10-5fbf-4821-8d0e-c4e5579df561 ab5d738f8ab8887cd8d4d8a9a89ae465 NA Primary Tumor C3N-04944-01 C3N-04944.RNA-Seq.R2.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 4355974170 FASTQ NA 2e0be108-dd9a-4c54-818c-00de20ce1c66 99954d8bbbff51ddd79111623f26078b NA Solid Tissue Normal C3N-04944-03 C3N-04944.RNA-Seq.R2.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 4301679556 FASTQ NA 827f415a-03aa-471c-91a4-82c5a6cf0e1d 83c50218676650d521be00e4ea3e5f4f NA Primary Tumor C3N-04944-01 +C3N-04944.RNA-Seq.transcriptome.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 67f56a65-fc7f-4a65-8423-207471b7254b.rna_seq.transcriptome.gdc_realn.bam 8392092405 BAM transcriptome 43724f64-0163-4e2a-805f-ff1c5d81c255 8a653996b7062e3f8c559ca5afbd26d2 hg38 Solid Tissue Normal C3N-04944-03 +C3N-04944.RNA-Seq.transcriptome.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 46c88849-3ba7-4857-8369-fe6bf3bedccd.rna_seq.transcriptome.gdc_realn.bam 10793606761 BAM transcriptome 686e56ce-d0f0-4dad-a0a8-1c969ecfcf6c 2d11ae61a863a41c080046d34802bd95 hg38 Primary Tumor C3N-04944-01 C3N-04944.WGS.N C3N-04944 LSCC WGS blood_normal CPT0334010002 CPT0334010002.WholeGenome.RP-2158.bam 24693379292 BAM NA 38226f1f-13be-4604-b711-f7a39e5e11c8 8d82d28cc92d6df87c8ef6ed679cd9e2 hg19 Blood Derived Normal C3N-04944-31 C3N-04944.WGS.T C3N-04944 LSCC WGS tumor CPT0333920006 CPT0333920006.WholeGenome.RP-2158.bam 22296538949 BAM NA fe21c720-f9ff-4562-9481-e327cacccfc5 a7a26d400473ad8051ca557dcb35619e hg19 Primary Tumor C3N-04944-01 C3N-04944.WXS.A C3N-04944 LSCC WXS tissue_normal CPT0333940006 CPT0333940006.WholeExome.RP-1303.bam 16720005498 BAM NA 0ac7b74b-6144-41ac-bd12-4936b3e669e6 4592799b5a75d11a0dc9ae63275e3ca7 hg19 Solid Tissue Normal C3N-04944-03 @@ -34316,18 +34439,27 @@ C3N-04944.WXS.N C3N-04944 LSCC WXS blood_normal CPT0334010002 CPT0334010002.Whol C3N-04944.WXS.T C3N-04944 LSCC WXS tumor CPT0333920006 CPT0333920006.WholeExome.RP-1303.bam 21515038676 BAM NA 7ea24cb4-0ca1-4c6f-b9d8-35b212c27403 d75db7068d5daf69b00ee98059ecd0f1 hg19 Primary Tumor C3N-04944-01 C3N-04982.miRNA-Seq.A C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TCCCGA_S19_L006_R1_001.unaln.bam 221058155 BAM NA 9ac35ebb-9785-42a7-b085-df1d19f2a8dc 13e0f5f55741c3fa26fb007a88eaf395 NA Solid Tissue Normal C3N-04982-03 C3N-04982.miRNA-Seq.T C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 201209_UNC32-K00270_0265_AHJ55WBBXY_GGTAGC_S14_L006_R1_001.unaln.bam 307441852 BAM NA 9b16e7a3-ef9f-4349-a9bc-30a4ac66a3a3 7ef9eab7e7f7731a3c2dca49bd911e22 NA Primary Tumor C3N-04982-01 +C3N-04982.RNA-Seq.chimeric.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 43659df3-0686-4caf-8bc1-8f5b116e5b1b.rna_seq.chimeric.gdc_realn.bam 386695884 BAM chimeric 8165d30d-0267-4a93-8985-14681e911abf ecf893017a14a9fbef5e19686a3c72c9 hg38 Solid Tissue Normal C3N-04982-03 +C3N-04982.RNA-Seq.chimeric.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 c16e6151-c879-4357-801c-9de63fb9b4e9.rna_seq.chimeric.gdc_realn.bam 143138338 BAM chimeric 9d66823f-72de-40c9-920d-1882ce852bbd e17f01d5cc29dc963a291688546d5784 hg38 Primary Tumor C3N-04982-01 +C3N-04982.RNA-Seq.genomic.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 43659df3-0686-4caf-8bc1-8f5b116e5b1b.rna_seq.genomic.gdc_realn.bam 9573773385 BAM genomic 1651a4c6-ac35-4fbb-b815-82872fa31d0e f25b51f00435ed263aac91a10bb9d311 hg38 Solid Tissue Normal C3N-04982-03 +C3N-04982.RNA-Seq.genomic.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 c16e6151-c879-4357-801c-9de63fb9b4e9.rna_seq.genomic.gdc_realn.bam 5890418564 BAM genomic 645ffda0-0230-43e1-908e-6d4f83fc6991 5194b2c2db7efbb9d34ffb1a3d7500c6 hg38 Primary Tumor C3N-04982-01 C3N-04982.RNA-Seq.R1.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4757949761 FASTQ NA 60b48130-b657-492c-9839-2a8236f5b752 cd413147711efc8cc25a401e3a71504e NA Solid Tissue Normal C3N-04982-03 C3N-04982.RNA-Seq.R1.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ NA 8ca5fa21-48e5-4126-a630-8d5d067831e7 14da63ac1a7f18357d25a1410aaf7d12 NA Primary Tumor C3N-04982-01 C3N-04982.RNA-Seq.R2.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ NA 9b338fa6-70b4-4384-a81e-302d3d66da03 d2d9b88d8064446462e8166df0fe62b3 NA Solid Tissue Normal C3N-04982-03 C3N-04982.RNA-Seq.R2.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ NA 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 7a3a4e2ea80c5e2f48867a477d8853bc NA Primary Tumor C3N-04982-01 +C3N-04982.RNA-Seq.transcriptome.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 43659df3-0686-4caf-8bc1-8f5b116e5b1b.rna_seq.transcriptome.gdc_realn.bam 10222250322 BAM transcriptome 0e1863be-29ec-41c6-a621-3c3f6249a340 5c19578e8b894f10938f3bb75dd49052 hg38 Solid Tissue Normal C3N-04982-03 +C3N-04982.RNA-Seq.transcriptome.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 c16e6151-c879-4357-801c-9de63fb9b4e9.rna_seq.transcriptome.gdc_realn.bam 8083905836 BAM transcriptome 54717ef9-72e4-42e9-bc23-bcb4f049a3d9 c641f60bbde0abaf5e7291d3996d50a9 hg38 Primary Tumor C3N-04982-01 C3N-04982.WGS.N C3N-04982 LSCC WGS blood_normal CPT0334410002 CPT0334410002.WholeGenome.RP-2158.bam 24182065112 BAM NA 08fa0a40-cbfe-42d6-8b88-e17c4b75d461 f077b3b5231e04b08d449bb798b37058 hg19 Blood Derived Normal C3N-04982-31 C3N-04982.WGS.T C3N-04982 LSCC WGS tumor CPT0334320006 CPT0334320006.WholeGenome.RP-2158.bam 26185475216 BAM NA b2cc65c4-7c17-43c9-9c61-0f46e6ca171f 2ddf4706a64c57df05eb7c9348ab1050 hg19 Primary Tumor C3N-04982-01 C3N-04982.WXS.A C3N-04982 LSCC WXS tissue_normal CPT0334340006 CPT0334340006.WholeExome.RP-1303.bam 17565628043 BAM NA 3f295d98-dc74-4237-a236-fc4dd6a1c619 8ff98287c0cde79b87f5e63eb3f84bc4 hg19 Solid Tissue Normal C3N-04982-03 C3N-04982.WXS.N C3N-04982 LSCC WXS blood_normal CPT0334410002 CPT0334410002.WholeExome.RP-1303.bam 26479139402 BAM NA 260542e7-bae2-4251-91b2-ad3af9b63445 9c9f2a764c30d838fb5162dc5fd84574 hg19 Blood Derived Normal C3N-04982-31 C3N-04982.WXS.T C3N-04982 LSCC WXS tumor CPT0334320006 CPT0334320006.WholeExome.RP-1303.bam 24071158645 BAM NA 003dbe5b-ccdd-41d0-a4f6-d4aa0749cdc6 25ac1dc10d62ab1f27c5c2f7e31b8080 hg19 Primary Tumor C3N-04982-01 C3N-05039.miRNA-Seq.T C3N-05039 GBM miRNA-Seq tumor CPT0375550010 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 339916115 BAM NA 216cd2e0-5dd6-45e7-a80b-229e2904b2b5 5e90186684cd07c0f67c25f6e35794a7 NA Primary Tumor C3N-05039-01,C3N-05039-02 +C3N-05039.RNA-Seq.chimeric.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.chimeric.gdc_realn.bam 318750367 BAM chimeric 4845134d-a149-45ca-a832-069806bfebf5 6c81162c193947918f5854c6701ecbf5 hg38 Primary Tumor C3N-05039-01,C3N-05039-02 +C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.genomic.gdc_realn.bam 8258799612 BAM genomic d89fee5c-6a24-4d3d-9c62-6f144847b5b4 f14e4949ebe9dca908fdaa67b8307173 hg38 Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.RNA-Seq.R1.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ NA 6ab25656-a131-45dd-8109-b25ff504557b 217e7c4eb1e1aec3d0823ff9fadd0323 NA Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.RNA-Seq.R2.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ NA 65389fb7-97ce-4735-bc64-6092b9173a2a 21cc7ed3109046088483706b8b9ac3d7 NA Primary Tumor C3N-05039-01,C3N-05039-02 +C3N-05039.RNA-Seq.transcriptome.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.transcriptome.gdc_realn.bam 10911307777 BAM transcriptome 2d9649a1-7f4a-41d4-9b83-f42cab6928cb 0b8d6102aa23bf9e3fb98940d2332a02 hg38 Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.WGS.N C3N-05039 GBM WGS blood_normal CPT0375610002 CPT0375610002.WholeGenome.RP-2158.bam 23424241762 BAM NA a018a950-4966-4f64-a4ef-d417ddf5ca0a c74d72c2dccb0f5d16bb3476728303bd hg19 Blood Derived Normal C3N-05039-31 C3N-05039.WGS.T C3N-05039 GBM WGS tumor CPT0375550007 CPT0375550007.WholeGenome.RP-2158.bam 27433556193 BAM NA 4428d05f-66c0-4500-b0d6-b31bf646ba74 855321130f5c1c0df497900fae841dd0 hg19 Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.WXS.N C3N-05039 GBM WXS blood_normal CPT0375610002 CPT0375610002.WholeExome.RP-1303.bam 29288445996 BAM NA 887088a7-de8b-43bc-af96-5ffb1dd72a0d c0e15167765168d0425947c5bd894f42 hg19 Blood Derived Normal C3N-05039-31 @@ -34396,10 +34528,16 @@ C3N-05080.WXS.T C3N-05080 LSCC WXS tumor CPT0321640006 CPT0321640006.WholeExome. C3N-05080.WXS.T.hg38 C3N-05080 LSCC WXS tumor CPT0321640006 9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wxs_gdc_realn.bam 43743988820 BAM NA 5573115d-3932-40c3-aa09-674bf155232d ad98f2b4d26bafe4b7b28b8d46dcee5d hg38 Primary Tumor C3N-05080-07 C3N-05085.miRNA-Seq.A C3N-05085 TBD miRNA-Seq tissue_normal CPT0313370006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAAAAG_S5_L006_R1_001.unaln.bam 194905287 BAM NA 6e8c9e6e-fbe0-458d-aac2-0f5a07287d11 965920a6e72e7bb2e9f5466cf823ae6e NA Solid Tissue Normal C3N-05085-10 C3N-05085.miRNA-Seq.T C3N-05085 TBD miRNA-Seq tumor CPT0384250009 201209_UNC32-K00270_0265_AHJ55WBBXY_CTTGTA_S29_L007_R1_001.unaln.bam 265183032 BAM NA caca83ea-6ccb-4748-9a67-8f571a34199b 5ae07305fea0b299591e28fbbf8072c9 NA Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.chimeric.gdc_realn.bam 438394741 BAM chimeric 8b525d74-78f5-437a-8756-e279fc79ff86 c0cac62f2834bc8cf462f411c2e8d007 hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 TBD RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.chimeric.gdc_realn.bam 479205123 BAM chimeric 913acfba-a2ab-4c66-9d2a-527f3aea5b8a ac35bc33d8b449545eb2b9bfdb2bafa9 hg38 Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.genomic.gdc_realn.bam 8029161656 BAM genomic 801e758c-a4d0-46eb-80ad-66955ab24c0b c78fb0775e5825e5972e2676e60bc58b hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 TBD RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.genomic.gdc_realn.bam 8657791455 BAM genomic cca77182-8040-47df-8a12-0067398f6c1b 5cfa13675d5f2f3068ef2a9e167e1079 hg38 Primary Tumor C3N-05085-08 C3N-05085.RNA-Seq.R1.A C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ NA 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c NA Solid Tissue Normal C3N-05085-10 C3N-05085.RNA-Seq.R1.T C3N-05085 TBD RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ NA dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 NA Primary Tumor C3N-05085-08 C3N-05085.RNA-Seq.R2.A C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ NA 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 NA Solid Tissue Normal C3N-05085-10 C3N-05085.RNA-Seq.R2.T C3N-05085 TBD RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ NA 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 NA Primary Tumor C3N-05085-08 +C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 TBD RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.transcriptome.gdc_realn.bam 8180973134 BAM transcriptome ca83d9a4-37ee-4132-99f6-c6e532ff0e34 495a6140112aa9c6531a3ad052c98223 hg38 Solid Tissue Normal C3N-05085-10 +C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 TBD RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.transcriptome.gdc_realn.bam 11130397782 BAM transcriptome b4f27b74-7c86-4722-9e74-4f46cf656602 1a75e24e752836fc261eadf4be245242 hg38 Primary Tumor C3N-05085-08 C3N-05100.MethArray.Green.T C3N-05100 LSCC Methylation Array tumor CPT0321680006 204372030023_R06C01_Grn.idat 13677895 IDAT Green 42ea3db3-7878-4d91-b7df-10969ada1006 30a9c32459d689e4e3daf2fc43b3e232 NA Primary Tumor C3N-05100-07 C3N-05100.MethArray.Red.T C3N-05100 LSCC Methylation Array tumor CPT0321680006 204372030023_R06C01_Red.idat 13677895 IDAT Red a42733c2-680c-48ae-9dc9-05063e929cb7 f7361203d4e0e9e65e189cfa3b49a2d1 NA Primary Tumor C3N-05100-07 C3N-05100.miRNA-Seq.T C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L008_R1_001.unaln.bam 205266159 BAM NA 089f3849-cf1f-43fa-ac2a-5f52e90983be 0473fd72d896d6cf03b9da1e588a24c9 NA Primary Tumor C3N-05100-07 @@ -34418,15 +34556,21 @@ C3N-05100.WXS.N.hg38 C3N-05100 LSCC WXS blood_normal CPT0321700002 39264da6-4d0b C3N-05100.WXS.T C3N-05100 LSCC WXS tumor CPT0321680006 CPT0321680006.WholeExome.RP-1303.bam 19296245113 BAM NA 5be5ff5d-0747-4e96-af04-8826353653d4 ff4ee76a5bd934ed907e29bc5ed8e1c9 hg19 Primary Tumor C3N-05100-07 C3N-05100.WXS.T.hg38 C3N-05100 LSCC WXS tumor CPT0321680006 5ef62f88-5293-4a68-a523-50eacbd2dc9b_wxs_gdc_realn.bam 26509937987 BAM NA 675f7e6d-bbea-44d5-9d78-5c14892feab7 84b0fcb3b2d9fbf89429d603221757b5 hg38 Primary Tumor C3N-05100-07 C3N-05114.miRNA-Seq.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM NA b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 NA Primary Tumor C3N-05114-01,C3N-05114-02 +C3N-05114.RNA-Seq.chimeric.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.chimeric.gdc_realn.bam 382193505 BAM chimeric daeb987f-ea05-401c-a93f-a60e9d3905d7 4bd92111c1215c9d2d93e239b08c65dc hg38 Primary Tumor C3N-05114-01,C3N-05114-02 +C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.genomic.gdc_realn.bam 7575656426 BAM genomic 57c00592-8859-417e-8ce8-cfda50845047 7b22bb6eb4936057643358633775082f hg38 Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.RNA-Seq.R1.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ NA 0a01510e-f773-49bb-b942-ed13ac1e72a2 7ccb79cf4feb43cb7a11de2c17862a64 NA Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.RNA-Seq.R2.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ NA 23d53980-2023-4c74-bb48-ff2282011226 6809a81e2988793b41f3ec0b1f4cf963 NA Primary Tumor C3N-05114-01,C3N-05114-02 +C3N-05114.RNA-Seq.transcriptome.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.transcriptome.gdc_realn.bam 10033628893 BAM transcriptome cd738c27-65f4-4d5c-b358-c4068d7f2188 aa67f3c940c8a0fc2991f14191675c39 hg38 Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.WGS.N C3N-05114 GBM WGS blood_normal CPT0375900002 CPT0375900002.WholeGenome.RP-2158.bam 23591039617 BAM NA 38162097-8649-4ff4-b8c4-c53b803608a5 ffaa27d9cfbcf74be380a13bcf015b81 hg19 Blood Derived Normal C3N-05114-31 C3N-05114.WGS.T C3N-05114 GBM WGS tumor CPT0375840007 CPT0375840007.WholeGenome.RP-2158.bam 29844175746 BAM NA 0d57def0-92d4-4b0f-8e0b-a73387c3674b 38179ed8709560da2a7c0f0b1d4e1139 hg19 Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.WXS.N C3N-05114 GBM WXS blood_normal CPT0375900002 CPT0375900002.WholeExome.RP-1303.bam 25448556617 BAM NA d2b66007-8e18-4443-b239-99447327d37c f336660243d5a75ff6ca9659c6400561 hg19 Blood Derived Normal C3N-05114-31 C3N-05114.WXS.T C3N-05114 GBM WXS tumor CPT0375840007 CPT0375840007.WholeExome.RP-1303.bam 20791720954 BAM NA aeeef8e6-c57b-4416-ba7a-930e5a820a20 df769d0aea8660c90786828fe21f1b79 hg19 Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05135.miRNA-Seq.T C3N-05135 GBM miRNA-Seq tumor CPT0376380009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATTCCT_S4_L007_R1_001.unaln.bam 212589586 BAM NA 42853fb5-69b7-4547-8a07-662ee45a6ff1 9ec463c4505a174611276ec332863211 NA Primary Tumor C3N-05135-01 +C3N-05135.RNA-Seq.chimeric.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.chimeric.gdc_realn.bam 646749898 BAM chimeric 504e657a-358e-471e-a720-d896872a9bb5 88e160d44c45cd384232b17bdba21802 hg38 Primary Tumor C3N-05135-01 +C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.genomic.gdc_realn.bam 7831052761 BAM genomic 8bc2cff2-bad5-4f1a-a690-a15cd20bbb98 e42b41068d90849e0f71cd14a4f4b3f3 hg38 Primary Tumor C3N-05135-01 C3N-05135.RNA-Seq.R1.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ NA f923cf94-4f61-4f33-8cab-5328f7853280 d2d92fa1c53cb23b60d1b41b5d4dbed5 NA Primary Tumor C3N-05135-01 C3N-05135.RNA-Seq.R2.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ NA bba10325-9b48-47e2-8983-b3687f010e06 3466d03aec58e9bb0ce0a17601332f9a NA Primary Tumor C3N-05135-01 +C3N-05135.RNA-Seq.transcriptome.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.transcriptome.gdc_realn.bam 7167337730 BAM transcriptome 1db5d39d-c945-4f5f-b990-95300e074e42 ee33d1c2c44fe6d0ddc4f048681a1cd1 hg38 Primary Tumor C3N-05135-01 C3N-05135.WGS.N C3N-05135 GBM WGS blood_normal CPT0376440002 CPT0376440002.WholeGenome.RP-2158.bam 23324063857 BAM NA 645e182c-a2ad-4329-8e06-7b7798b1b827 9e38921d6dae8efa715300066372cefb hg19 Blood Derived Normal C3N-05135-31 C3N-05135.WGS.T C3N-05135 GBM WGS tumor CPT0376380005 CPT0376380005.WholeGenome.RP-2158.bam 26465673099 BAM NA bcb1ec0a-99ac-4ca9-961a-4b5ab271f384 4c2676dd4e90a86bdfd2aba23a19a69a hg19 Primary Tumor C3N-05135-01 C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal CPT0376440002 CPT0376440002.WholeExome.RP-1303.bam 25191303128 BAM NA 1d01b9a3-f8de-43d8-9f28-277c29919db9 97b524051c0866f89b6af69556479a43 hg19 Blood Derived Normal C3N-05135-31 @@ -34461,10 +34605,16 @@ C3N-05629.WXS.T C3N-05629 LSCC WXS tumor CPT0321760006 CPT0321760006.WholeExome. C3N-05629.WXS.T.hg38 C3N-05629 LSCC WXS tumor CPT0321760006 392cdd57-f49f-436c-88b4-556f2a60586a_wxs_gdc_realn.bam 57779377757 BAM NA 602b4fc0-be3b-43af-9651-9b78edf6e935 05000c4b3736dfabdd08d13359258c36 hg38 Primary Tumor C3N-05629-01 C3N-05911.miRNA-Seq.A C3N-05911 TBD miRNA-Seq tissue_normal CPT0321870009 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGATC_S27_L007_R1_001.unaln.bam 209412885 BAM NA e7ac4a78-57e6-4220-a4d7-102c432fb9cb c1dfa639e8c7cd83e82fe3740bcc92d3 NA Solid Tissue Normal C3N-05911-09 C3N-05911.miRNA-Seq.T C3N-05911 TBD miRNA-Seq tumor CPT0384280009 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTCAA_S24_L007_R1_001.unaln.bam 335161236 BAM NA 50689b11-63be-4b1b-aa4e-0bc0c1cbb938 44d4de901708dbca725a4c31f0c14135 NA Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.chimeric.gdc_realn.bam 430945174 BAM chimeric fd457577-d86b-43ab-81ba-8a8bfe6bf28c 55e695332cec1440bf2e6e4d8473dbd2 hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 TBD RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.chimeric.gdc_realn.bam 348072812 BAM chimeric ef9e948e-b96e-4c7f-a527-3aedab670897 898c44bc83b274658910780a9ac42dbb hg38 Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.genomic.gdc_realn.bam 10513969798 BAM genomic 3e31edf8-9755-470f-9baa-d47207876dca 6cb75c3ddacdf33d87d0f64d897003ff hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 TBD RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.genomic.gdc_realn.bam 6768653975 BAM genomic 71263301-3c68-4ba8-b9a4-916e685587ce 739a37a3712dcc62665680df39b43bed hg38 Primary Tumor C3N-05911-02 C3N-05911.RNA-Seq.R1.A C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ NA a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c NA Solid Tissue Normal C3N-05911-09 C3N-05911.RNA-Seq.R1.T C3N-05911 TBD RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ NA 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 NA Primary Tumor C3N-05911-02 C3N-05911.RNA-Seq.R2.A C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ NA 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 NA Solid Tissue Normal C3N-05911-09 C3N-05911.RNA-Seq.R2.T C3N-05911 TBD RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ NA 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d NA Primary Tumor C3N-05911-02 +C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.transcriptome.gdc_realn.bam 12383098108 BAM transcriptome 2697aa4c-c744-425f-bcf2-726c5ecbac48 3372397ca905a1f828a956eff9333174 hg38 Solid Tissue Normal C3N-05911-09 +C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 TBD RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.transcriptome.gdc_realn.bam 10776331017 BAM transcriptome d83b7d15-a641-48c2-aa9c-f1d5c270befd 4aff046bcd49e6d61adb39a976f033ab hg38 Primary Tumor C3N-05911-02 C3N-05911.WGS.N C3N-05911 TBD WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM NA 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 hg19 Blood Derived Normal C3N-05911-31 C3N-05911.WGS.T C3N-05911 TBD WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM NA 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 hg19 Primary Tumor C3N-05911-02 C3N-05911.WXS.A C3N-05911 TBD WXS tissue_normal CPT0321870006 CPT0321870006.WholeExome.RP-1303.bam 21699064525 BAM NA d32c097e-ef8a-4061-ac06-da419499d068 e2712f3dda8a311665c7793a3a95eb0f hg19 Solid Tissue Normal C3N-05911-09 @@ -34586,5 +34736,8 @@ C3N-05929.WXS.N C3N-05929 LSCC WXS blood_normal CPT0322570002 CPT0322570002.Whol C3N-05929.WXS.N.hg38 C3N-05929 LSCC WXS blood_normal CPT0322570002 e3bf416b-3d08-4d1b-bec4-808e55c7788c_wxs_gdc_realn.bam 29330029854 BAM NA df539074-52ef-4708-8e48-fef807654ea1 cf6102d7bb3013e59f8158bed10d1847 hg38 Blood Derived Normal C3N-05929-31 C3N-05929.WXS.T C3N-05929 LSCC WXS tumor CPT0322530006 CPT0322530006.WholeExome.RP-1303.bam 23508324471 BAM NA 14a99afc-f095-46d1-9d1b-b1af3451575c c902f4e82f4031a8e4f0ef90971e7610 hg19 Primary Tumor C3N-05929-03 C3N-05929.WXS.T.hg38 C3N-05929 LSCC WXS tumor CPT0322530006 23fa88f9-9293-406b-bc21-2928ff12bc8b_wxs_gdc_realn.bam 32069115005 BAM NA 7f31c9ed-2dd8-4bb3-a9bc-e3872219f915 88398555bd2d8e927ea2c6aa2484f2ae hg38 Primary Tumor C3N-05929-03 +PT-Q2AG.RNA-Seq.chimeric.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.chimeric.gdc_realn.bam 520151066 BAM chimeric bafd4b94-94e6-4e1f-8b6e-05330da3362c 9a13707828ab03751b781c2946e9f019 hg38 Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU +PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.genomic.gdc_realn.bam 13360810828 BAM genomic 4393dcd0-75c6-42e6-8db6-3d8321d724bd c41c144ea11705e4e393473a5a9f3003 hg38 Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU PT-Q2AG.RNA-Seq.R1.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ NA 624298d8-62b5-48e2-8dbb-114aa81b99b3 daa12bbc628c67bbe970376515961d18 NA Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU PT-Q2AG.RNA-Seq.R2.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ NA 0fce5ae6-0a02-4802-8167-dd6405540e55 ad0d73b84334fddc373c6386f45998d8 NA Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU +PT-Q2AG.RNA-Seq.transcriptome.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.transcriptome.gdc_realn.bam 21046952385 BAM transcriptome a3231b5e-b6ed-464b-bff1-4d370cb8cc9e 8e3a0ad7a991e352c1d9a98d27303c9b hg38 Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU