From 3e51ca8c1069dc763471428ce40468a9a90d392c Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Thu, 28 Jul 2022 19:40:51 -0500 Subject: [PATCH] Removing 312 RNA-Seq datafiles (2657.63Gb) * Work dir: /diskmnt/Projects/cptac_scratch/CPTAC3.workflow/export/20220728.RNA-SEq/E_remove_data --- BamMap/katmai.BamMap.dat | 312 --------------------------------------- 1 file changed, 312 deletions(-) diff --git a/BamMap/katmai.BamMap.dat b/BamMap/katmai.BamMap.dat index af76d91..ca607f3 100644 --- a/BamMap/katmai.BamMap.dat +++ b/BamMap/katmai.BamMap.dat @@ -210,10 +210,6 @@ C3L-00017.miRNA-Seq.A C3L-00017 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00017.miRNA-Seq.A.hg38 C3L-00017 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/79b378f0-968f-4d13-abe6-647051c980b7/25542831-ec73-47ac-bf88-7ff8da45c341_mirnaseq_gdc_realn.bam 281278348 BAM hg38 79b378f0-968f-4d13-abe6-647051c980b7 katmai C3L-00017.miRNA-Seq.T C3L-00017 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/047b497c-8c8a-400f-9ccb-bba22c7a1c2f/181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L002_R1_001.unaln.bam 314125962 BAM NA 047b497c-8c8a-400f-9ccb-bba22c7a1c2f katmai C3L-00017.miRNA-Seq.T.hg38 C3L-00017 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bcdb1f0b-bbe9-4606-a0f6-29a116719508/2ef609a6-cc14-4705-b02a-fb080fb25796_mirnaseq_gdc_realn.bam 342883849 BAM hg38 bcdb1f0b-bbe9-4606-a0f6-29a116719508 katmai -C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9fbbc31e-053a-4d23-8a67-2fdff79e1141/d82ec42c-7c4f-4e59-ba88-1c883b9c6732.rna_seq.genomic.gdc_realn.bam 9981542710 BAM hg38 9fbbc31e-053a-4d23-8a67-2fdff79e1141 katmai -C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9fbbc31e-053a-4d23-8a67-2fdff79e1141/d82ec42c-7c4f-4e59-ba88-1c883b9c6732.rna_seq.genomic.gdc_realn.bam 9981542710 BAM hg38 9fbbc31e-053a-4d23-8a67-2fdff79e1141 katmai -C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/435f1318-6e70-4a62-9321-b0ca736e9d14/d51783ce-12f6-46ca-86f1-10d85611cf17.rna_seq.genomic.gdc_realn.bam 7421030916 BAM hg38 435f1318-6e70-4a62-9321-b0ca736e9d14 katmai -C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/435f1318-6e70-4a62-9321-b0ca736e9d14/d51783ce-12f6-46ca-86f1-10d85611cf17.rna_seq.genomic.gdc_realn.bam 7421030916 BAM hg38 435f1318-6e70-4a62-9321-b0ca736e9d14 katmai C3L-00019.MethArray.Green.T C3L-00019 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c89451be-e74a-4f9f-987c-af3cbc03346d/202176300039_R07C01_Grn.idat 13676224 IDAT NA c89451be-e74a-4f9f-987c-af3cbc03346d katmai C3L-00019.MethArray.Red.T C3L-00019 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/84cab415-df9e-4327-8131-5e23e7f56605/202176300039_R07C01_Red.idat 13676224 IDAT NA 84cab415-df9e-4327-8131-5e23e7f56605 katmai C3L-00019.miRNA-Seq.T C3L-00019 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/44f1bd93-573b-47d3-bb99-0520b569a493/181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L004_R1_001.unaln.bam 264088211 BAM NA 44f1bd93-573b-47d3-bb99-0520b569a493 katmai @@ -338,10 +334,6 @@ C3L-00102.miRNA-Seq.A C3L-00102 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00102.miRNA-Seq.A.hg38 C3L-00102 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/a2f01a29-55b8-4538-9137-7c639b5c252e/c054f27d-d76c-433d-86bf-45d781be2046_mirnaseq_gdc_realn.bam 250907245 BAM hg38 a2f01a29-55b8-4538-9137-7c639b5c252e katmai C3L-00102.miRNA-Seq.T C3L-00102 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0a559dbf-a8cc-4b1e-94c3-b340c09dd5f3/181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L002_R1_001.unaln.bam 271601291 BAM NA 0a559dbf-a8cc-4b1e-94c3-b340c09dd5f3 katmai C3L-00102.miRNA-Seq.T.hg38 C3L-00102 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e4d8f63b-7b60-4052-9eec-cc2ae227c9a5/bc3b9beb-00c2-4c0e-b2f4-1046e4e3b1dd_mirnaseq_gdc_realn.bam 301265231 BAM hg38 e4d8f63b-7b60-4052-9eec-cc2ae227c9a5 katmai -C3L-00102.RNA-Seq.genomic.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/af3b88e2-6420-4143-8609-eb4ddc1b02f4/57493d7e-611e-4b88-9009-711dd1ad3ab6.rna_seq.genomic.gdc_realn.bam 8955500863 BAM hg38 af3b88e2-6420-4143-8609-eb4ddc1b02f4 katmai -C3L-00102.RNA-Seq.genomic.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/af3b88e2-6420-4143-8609-eb4ddc1b02f4/57493d7e-611e-4b88-9009-711dd1ad3ab6.rna_seq.genomic.gdc_realn.bam 8955500863 BAM hg38 af3b88e2-6420-4143-8609-eb4ddc1b02f4 katmai -C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7466fd10-0f9a-467a-bf50-043383661537/f76fa529-e080-43d5-a417-52c26e32349e.rna_seq.genomic.gdc_realn.bam 7909040825 BAM hg38 7466fd10-0f9a-467a-bf50-043383661537 katmai -C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7466fd10-0f9a-467a-bf50-043383661537/f76fa529-e080-43d5-a417-52c26e32349e.rna_seq.genomic.gdc_realn.bam 7909040825 BAM hg38 7466fd10-0f9a-467a-bf50-043383661537 katmai C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6/202184990069_R01C01_Grn.idat 13676226 IDAT NA e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6 katmai C3L-00103.MethArray.Green.T.HET_oymKX C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c8b1652b-e7b5-48ae-bdd2-930be43ddaf9/204372030070_R01C01_Grn.idat 13677900 IDAT NA c8b1652b-e7b5-48ae-bdd2-930be43ddaf9 katmai C3L-00103.MethArray.Green.T.HET_oyo53 C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1c3e5948-a555-47cc-821c-6ba3f483cda1/204367490030_R02C01_Grn.idat 13677885 IDAT NA 1c3e5948-a555-47cc-821c-6ba3f483cda1 katmai @@ -423,8 +415,6 @@ C3L-00189.MethArray.Green.T C3L-00189 PDA Methylation Array tumor /diskmnt/Proje C3L-00189.MethArray.Red.T C3L-00189 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/60a29b8f-f794-4e40-9ca4-620fbbbb3fc5/202184990063_R04C01_Red.idat 13676226 IDAT NA 60a29b8f-f794-4e40-9ca4-620fbbbb3fc5 katmai C3L-00189.miRNA-Seq.T C3L-00189 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7e8d49fc-bf8d-457a-8510-f0dc6d9218a6/181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L001_R1_001.unaln.bam 264208048 BAM NA 7e8d49fc-bf8d-457a-8510-f0dc6d9218a6 katmai C3L-00189.miRNA-Seq.T.hg38 C3L-00189 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/96d11e31-189a-41cb-b974-fe1bb58e8abf/abf4b7e1-0639-49f1-afcb-a7bbaba06766_mirnaseq_gdc_realn.bam 290752183 BAM hg38 96d11e31-189a-41cb-b974-fe1bb58e8abf katmai -C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d612777d-91df-49a9-819a-162647f7ae15/5fd31346-f54b-43b5-9968-2e463f87f4f7.rna_seq.genomic.gdc_realn.bam 8640547254 BAM hg38 d612777d-91df-49a9-819a-162647f7ae15 katmai -C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d612777d-91df-49a9-819a-162647f7ae15/5fd31346-f54b-43b5-9968-2e463f87f4f7.rna_seq.genomic.gdc_realn.bam 8640547254 BAM hg38 d612777d-91df-49a9-819a-162647f7ae15 katmai C3L-00263.MethArray.Green.A C3L-00263 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/04c477b4-5881-46ea-8cf2-84f95174ae3e/203027390091_R01C01_Grn.idat 13676230 IDAT NA 04c477b4-5881-46ea-8cf2-84f95174ae3e katmai C3L-00263.MethArray.Green.T C3L-00263 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a30fa96e-8720-4738-87e7-34afc186242f/202163530120_R08C01_Grn.idat 13676216 IDAT NA a30fa96e-8720-4738-87e7-34afc186242f katmai C3L-00263.MethArray.Red.A C3L-00263 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4e57b96b-e36b-40b0-89cd-84da3ef3e546/203027390091_R01C01_Red.idat 13676230 IDAT NA 4e57b96b-e36b-40b0-89cd-84da3ef3e546 katmai @@ -448,8 +438,6 @@ C3L-00277.MethArray.Red.A C3L-00277 PDA Methylation Array tissue_normal /diskmnt C3L-00277.MethArray.Red.T C3L-00277 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fb93588e-6fde-4ea9-a728-30f3b72d0673/202178770111_R06C01_Red.idat 13676231 IDAT NA fb93588e-6fde-4ea9-a728-30f3b72d0673 katmai C3L-00277.miRNA-Seq.T C3L-00277 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/316afba4-7e72-4cc3-bd61-a97f446cf36f/181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 235999101 BAM NA 316afba4-7e72-4cc3-bd61-a97f446cf36f katmai C3L-00277.miRNA-Seq.T.hg38 C3L-00277 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/71b322f7-3927-4b7c-9562-c716c03dbb01/fcaf45f4-732b-403f-8aec-6bc44e26e703_mirnaseq_gdc_realn.bam 265445646 BAM hg38 71b322f7-3927-4b7c-9562-c716c03dbb01 katmai -C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5044465f-6d5a-4f30-b024-c0dbb7144ad1/a4f3c3ff-60d1-4ca3-897f-785dcf1d25d0.rna_seq.genomic.gdc_realn.bam 8056180233 BAM hg38 5044465f-6d5a-4f30-b024-c0dbb7144ad1 katmai -C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5044465f-6d5a-4f30-b024-c0dbb7144ad1/a4f3c3ff-60d1-4ca3-897f-785dcf1d25d0.rna_seq.genomic.gdc_realn.bam 8056180233 BAM hg38 5044465f-6d5a-4f30-b024-c0dbb7144ad1 katmai C3L-00278.MethArray.Green.T C3L-00278 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/57007e75-15da-49dd-9621-1c6bdbf7d23c/202184990052_R08C01_Grn.idat 13676226 IDAT NA 57007e75-15da-49dd-9621-1c6bdbf7d23c katmai C3L-00278.MethArray.Red.T C3L-00278 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a4c4b6f-3046-4e45-a658-b2ea12e92ed2/202184990052_R08C01_Red.idat 13676226 IDAT NA 8a4c4b6f-3046-4e45-a658-b2ea12e92ed2 katmai C3L-00278.miRNA-Seq.T C3L-00278 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fc74dee6-efdf-4b55-bfb2-969e447ea5fa/181012_UNC32-K00270_0124_AH223CBBXY_GGCTAC_S32_L002_R1_001.unaln.bam 254899906 BAM NA fc74dee6-efdf-4b55-bfb2-969e447ea5fa katmai @@ -531,16 +519,10 @@ C3L-00395.miRNA-Seq.A C3L-00395 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00395.miRNA-Seq.A.hg38 C3L-00395 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/572d478f-cfbf-499d-9a22-a6731d54706c/ba9dcc2f-fdb1-476c-858c-b4b7c2efc1a3_mirnaseq_gdc_realn.bam 169090918 BAM hg38 572d478f-cfbf-499d-9a22-a6731d54706c katmai C3L-00395.miRNA-Seq.T C3L-00395 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c1f2cfc7-c79b-4e50-8a90-73c80e85d1cd/181012_UNC32-K00270_0124_AH223CBBXY_ATCACG_S22_L004_R1_001.unaln.bam 256935267 BAM NA c1f2cfc7-c79b-4e50-8a90-73c80e85d1cd katmai C3L-00395.miRNA-Seq.T.hg38 C3L-00395 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/efe7344b-c458-4e01-895c-98dae9b97004/94654452-5c3a-461c-b21d-5fd3a9507db5_mirnaseq_gdc_realn.bam 292282611 BAM hg38 efe7344b-c458-4e01-895c-98dae9b97004 katmai -C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/68478b4b-f188-4bde-91b7-5f65df9f3551/3b4f8139-2d72-4ff7-910a-cfd233b67c6b.rna_seq.genomic.gdc_realn.bam 9146584176 BAM hg38 68478b4b-f188-4bde-91b7-5f65df9f3551 katmai -C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/68478b4b-f188-4bde-91b7-5f65df9f3551/3b4f8139-2d72-4ff7-910a-cfd233b67c6b.rna_seq.genomic.gdc_realn.bam 9146584176 BAM hg38 68478b4b-f188-4bde-91b7-5f65df9f3551 katmai -C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4d4e9a22-c614-40da-b130-c230a07eb8eb/ad6bd250-1110-46cb-addb-a5066749fe24.rna_seq.genomic.gdc_realn.bam 9060089388 BAM hg38 4d4e9a22-c614-40da-b130-c230a07eb8eb katmai -C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4d4e9a22-c614-40da-b130-c230a07eb8eb/ad6bd250-1110-46cb-addb-a5066749fe24.rna_seq.genomic.gdc_realn.bam 9060089388 BAM hg38 4d4e9a22-c614-40da-b130-c230a07eb8eb katmai C3L-00401.MethArray.Green.T C3L-00401 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6105a4b4-a111-49cd-bdb2-dff96ff0bb54/202176290046_R01C01_Grn.idat 13676215 IDAT NA 6105a4b4-a111-49cd-bdb2-dff96ff0bb54 katmai C3L-00401.MethArray.Red.T C3L-00401 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bae536dc-320c-44fb-ae20-8b51aedd0800/202176290046_R01C01_Red.idat 13676215 IDAT NA bae536dc-320c-44fb-ae20-8b51aedd0800 katmai C3L-00401.miRNA-Seq.T C3L-00401 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b4717929-7e6d-4b4b-acc5-868415eb743c/181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L004_R1_001.unaln.bam 251182047 BAM NA b4717929-7e6d-4b4b-acc5-868415eb743c katmai C3L-00401.miRNA-Seq.T.hg38 C3L-00401 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/87a834d0-99fe-4e42-8068-87c172a69968/1f5cd054-cbfa-431d-b707-c5b85c43b3ba_mirnaseq_gdc_realn.bam 276651158 BAM hg38 87a834d0-99fe-4e42-8068-87c172a69968 katmai -C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4d93b645-a43e-4287-a9f4-a8b32dc4f81c/0ead3020-d6fb-40ff-8aef-6ee893a64cb4.rna_seq.genomic.gdc_realn.bam 6658360190 BAM hg38 4d93b645-a43e-4287-a9f4-a8b32dc4f81c katmai -C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4d93b645-a43e-4287-a9f4-a8b32dc4f81c/0ead3020-d6fb-40ff-8aef-6ee893a64cb4.rna_seq.genomic.gdc_realn.bam 6658360190 BAM hg38 4d93b645-a43e-4287-a9f4-a8b32dc4f81c katmai C3L-00412.MethArray.Green.A C3L-00412 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/255ff5f9-0e34-49c5-993f-60f52be885f5/203028200093_R04C01_Grn.idat 13676226 IDAT NA 255ff5f9-0e34-49c5-993f-60f52be885f5 katmai C3L-00412.MethArray.Green.T C3L-00412 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d34439f5-6796-4054-b19a-0179ad4c74a1/202176290087_R01C01_Grn.idat 13676216 IDAT NA d34439f5-6796-4054-b19a-0179ad4c74a1 katmai C3L-00412.MethArray.Red.A C3L-00412 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f6726fe0-f7ae-4aa6-8b7d-7d70a54128f6/203028200093_R04C01_Red.idat 13676226 IDAT NA f6726fe0-f7ae-4aa6-8b7d-7d70a54128f6 katmai @@ -810,10 +792,6 @@ C3L-00589.miRNA-Seq.A C3L-00589 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00589.miRNA-Seq.A.hg38 C3L-00589 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/0bcfbfc8-5d7e-4a85-8615-acd85710f533/34aca5db-215b-4947-a043-6b063cb678ed_mirnaseq_gdc_realn.bam 216535930 BAM hg38 0bcfbfc8-5d7e-4a85-8615-acd85710f533 katmai C3L-00589.miRNA-Seq.T C3L-00589 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ee7ef5aa-5078-4618-a6eb-368d49a14bb2/180924_UNC31-K00269_0154_AHWTMLBBXX_ACTGAT_S6_L003_R1_001.unaln.bam 306383475 BAM NA ee7ef5aa-5078-4618-a6eb-368d49a14bb2 katmai C3L-00589.miRNA-Seq.T.hg38 C3L-00589 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bda3f741-1069-4724-beeb-0157e95cea10/65ddf445-e8d9-4c52-8e5c-67db9f898552_mirnaseq_gdc_realn.bam 338589852 BAM hg38 bda3f741-1069-4724-beeb-0157e95cea10 katmai -C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c5eabcb4-275c-410d-9879-6eb5869c36c1/790603ca-17bb-4395-ba5e-94900617a06c.rna_seq.genomic.gdc_realn.bam 11075697519 BAM hg38 c5eabcb4-275c-410d-9879-6eb5869c36c1 katmai -C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c5eabcb4-275c-410d-9879-6eb5869c36c1/790603ca-17bb-4395-ba5e-94900617a06c.rna_seq.genomic.gdc_realn.bam 11075697519 BAM hg38 c5eabcb4-275c-410d-9879-6eb5869c36c1 katmai -C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/74da0ec0-3512-4cc3-baf2-82a7d1060ded/aeba96cf-8652-4fb7-828a-ab10e1b2ec0b.rna_seq.genomic.gdc_realn.bam 7967964091 BAM hg38 74da0ec0-3512-4cc3-baf2-82a7d1060ded katmai -C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/74da0ec0-3512-4cc3-baf2-82a7d1060ded/aeba96cf-8652-4fb7-828a-ab10e1b2ec0b.rna_seq.genomic.gdc_realn.bam 7967964091 BAM hg38 74da0ec0-3512-4cc3-baf2-82a7d1060ded katmai C3L-00591.MethArray.Green.T C3L-00591 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4dbc8ea7-8b62-4393-b255-3fe460cf3561/202176300111_R07C01_Grn.idat 13676226 IDAT NA 4dbc8ea7-8b62-4393-b255-3fe460cf3561 katmai C3L-00591.MethArray.Red.T C3L-00591 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2698ecd0-c6d3-4a19-a249-0f1548b022e2/202176300111_R07C01_Red.idat 13676226 IDAT NA 2698ecd0-c6d3-4a19-a249-0f1548b022e2 katmai C3L-00591.miRNA-Seq.T C3L-00591 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dd35b7f0-3f19-4b02-95d7-ff095cc593f1/181113_UNC31-K00269_0164_AH23NNBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 307995687 BAM NA dd35b7f0-3f19-4b02-95d7-ff095cc593f1 katmai @@ -823,14 +801,10 @@ C3L-00598.MethArray.Green.T.DEEP_vQZPEM C3L-00598 PDA Methylation Array tumor /d C3L-00598.MethArray.Red.T.DEEP_vQZPEM C3L-00598 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3fc12e75-d229-44ce-ad2f-4a7677130b7c/202176290087_R07C01_Red.idat 13676216 IDAT NA 3fc12e75-d229-44ce-ad2f-4a7677130b7c katmai C3L-00598.miRNA-Seq.T C3L-00598 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e1b0bfa6-bd6c-4ef5-bb84-efe879bd137a/181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L004_R1_001.unaln.bam 218737465 BAM NA e1b0bfa6-bd6c-4ef5-bb84-efe879bd137a katmai C3L-00598.miRNA-Seq.T.hg38 C3L-00598 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/aa0de3bf-a63e-47fa-a199-f7aedd595e78/dd5f8bd8-28d2-4fa0-bb1c-a1ceb26dfd16_mirnaseq_gdc_realn.bam 241100929 BAM hg38 aa0de3bf-a63e-47fa-a199-f7aedd595e78 katmai -C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4c7716fd-1c10-4de1-a7b1-a764133a52e0/44dc96bd-d59e-4b31-8897-552d8ae9fd91.rna_seq.genomic.gdc_realn.bam 8755804690 BAM hg38 4c7716fd-1c10-4de1-a7b1-a764133a52e0 katmai -C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4c7716fd-1c10-4de1-a7b1-a764133a52e0/44dc96bd-d59e-4b31-8897-552d8ae9fd91.rna_seq.genomic.gdc_realn.bam 8755804690 BAM hg38 4c7716fd-1c10-4de1-a7b1-a764133a52e0 katmai C3L-00599.MethArray.Green.T C3L-00599 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aeea580a-33d4-405a-9bd9-def98a86b0eb/202176290087_R04C01_Grn.idat 13676216 IDAT NA aeea580a-33d4-405a-9bd9-def98a86b0eb katmai C3L-00599.MethArray.Red.T C3L-00599 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/baae18ce-4098-49e6-8389-17caca30b575/202176290087_R04C01_Red.idat 13676216 IDAT NA baae18ce-4098-49e6-8389-17caca30b575 katmai C3L-00599.miRNA-Seq.T C3L-00599 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20a1ef7f-a834-47cc-ae3d-169c44b255b9/181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L006_R1_001.unaln.bam 271321177 BAM NA 20a1ef7f-a834-47cc-ae3d-169c44b255b9 katmai C3L-00599.miRNA-Seq.T.hg38 C3L-00599 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1db9c07f-db5c-4576-9343-e1b51aeafe00/ed4847ac-5fc9-4b1d-81bb-b798ce90451a_mirnaseq_gdc_realn.bam 298462902 BAM hg38 1db9c07f-db5c-4576-9343-e1b51aeafe00 katmai -C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a0725004-09c9-496c-a566-93ce12170d58/6232b21a-09e6-47ff-b083-e5db46d06e09.rna_seq.genomic.gdc_realn.bam 9799130490 BAM hg38 a0725004-09c9-496c-a566-93ce12170d58 katmai -C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a0725004-09c9-496c-a566-93ce12170d58/6232b21a-09e6-47ff-b083-e5db46d06e09.rna_seq.genomic.gdc_realn.bam 9799130490 BAM hg38 a0725004-09c9-496c-a566-93ce12170d58 katmai C3L-00601.MethArray.Green.T C3L-00601 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/99ad091d-778b-4a83-9d04-ba38d826fcfc/202176290105_R06C01_Grn.idat 13676216 IDAT NA 99ad091d-778b-4a83-9d04-ba38d826fcfc katmai C3L-00601.MethArray.Red.T C3L-00601 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f58c4978-d966-4e3e-8dc3-9a72f12e09e0/202176290105_R06C01_Red.idat 13676216 IDAT NA f58c4978-d966-4e3e-8dc3-9a72f12e09e0 katmai C3L-00601.miRNA-Seq.A C3L-00601 UCEC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ce0603d7-3f18-473f-9fae-f9c8101b261b/181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L006_R1_001.unaln.bam 247075747 BAM NA ce0603d7-3f18-473f-9fae-f9c8101b261b katmai @@ -906,18 +880,12 @@ C3L-00622.miRNA-Seq.A C3L-00622 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00622.miRNA-Seq.A.hg38 C3L-00622 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/fbb2c2db-3c3b-4ff0-b0d6-7809b313ae0c/80de0482-2005-4cde-a090-787942b243e0_mirnaseq_gdc_realn.bam 209187470 BAM hg38 fbb2c2db-3c3b-4ff0-b0d6-7809b313ae0c katmai C3L-00622.miRNA-Seq.T C3L-00622 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/35721dfb-f66c-4b1d-aa0d-62db5655d72d/181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L006_R1_001.unaln.bam 252390847 BAM NA 35721dfb-f66c-4b1d-aa0d-62db5655d72d katmai C3L-00622.miRNA-Seq.T.hg38 C3L-00622 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fcad9da4-4fdc-49f4-9f0c-569f0fedd487/1ec94e74-c048-41b0-9e1f-e40597ed3469_mirnaseq_gdc_realn.bam 282150491 BAM hg38 fcad9da4-4fdc-49f4-9f0c-569f0fedd487 katmai -C3L-00622.RNA-Seq.genomic.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9be0c237-d074-4d2b-895f-80daef14a6b7/c9e621ed-ed0b-4392-bc07-581253c66156.rna_seq.genomic.gdc_realn.bam 8439978864 BAM hg38 9be0c237-d074-4d2b-895f-80daef14a6b7 katmai -C3L-00622.RNA-Seq.genomic.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9be0c237-d074-4d2b-895f-80daef14a6b7/c9e621ed-ed0b-4392-bc07-581253c66156.rna_seq.genomic.gdc_realn.bam 8439978864 BAM hg38 9be0c237-d074-4d2b-895f-80daef14a6b7 katmai -C3L-00622.RNA-Seq.genomic.T.hg38 C3L-00622 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7ee29760-a36e-44c6-bbbf-25450da72715/17198d79-94ff-4c52-afbb-d510fe314c15.rna_seq.genomic.gdc_realn.bam 9984650010 BAM hg38 7ee29760-a36e-44c6-bbbf-25450da72715 katmai -C3L-00622.RNA-Seq.genomic.T.hg38 C3L-00622 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7ee29760-a36e-44c6-bbbf-25450da72715/17198d79-94ff-4c52-afbb-d510fe314c15.rna_seq.genomic.gdc_realn.bam 9984650010 BAM hg38 7ee29760-a36e-44c6-bbbf-25450da72715 katmai C3L-00625.MethArray.Green.A C3L-00625 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4d313f52-532c-4fde-abde-fd0837de0979/203561620054_R08C01_Grn.idat 13676231 IDAT NA 4d313f52-532c-4fde-abde-fd0837de0979 katmai C3L-00625.MethArray.Green.T C3L-00625 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cbc049f4-85fe-4b23-a38a-d0adee0fb3f5/202178770008_R08C01_Grn.idat 13676231 IDAT NA cbc049f4-85fe-4b23-a38a-d0adee0fb3f5 katmai C3L-00625.MethArray.Red.A C3L-00625 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ffd83c2b-979b-472a-987e-999f15cbae9c/203561620054_R08C01_Red.idat 13676231 IDAT NA ffd83c2b-979b-472a-987e-999f15cbae9c katmai C3L-00625.MethArray.Red.T C3L-00625 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bc8a8b7d-6f73-444a-8b90-086aba79b386/202178770008_R08C01_Red.idat 13676231 IDAT NA bc8a8b7d-6f73-444a-8b90-086aba79b386 katmai C3L-00625.miRNA-Seq.T C3L-00625 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/81385cdc-dacc-4e70-825f-be2e84d1e46f/181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L001_R1_001.unaln.bam 261216042 BAM NA 81385cdc-dacc-4e70-825f-be2e84d1e46f katmai C3L-00625.miRNA-Seq.T.hg38 C3L-00625 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ea0a3383-e4b2-4cfa-b2e3-ba930473d1b3/cefb842d-0eee-4a00-8ccb-541a4655d842_mirnaseq_gdc_realn.bam 287470974 BAM hg38 ea0a3383-e4b2-4cfa-b2e3-ba930473d1b3 katmai -C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/af3e8a0e-23fd-4729-9944-58264ef43564/8a2ebd5f-0857-43f9-b057-293deaf18bc0.rna_seq.genomic.gdc_realn.bam 9260242858 BAM hg38 af3e8a0e-23fd-4729-9944-58264ef43564 katmai -C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/af3e8a0e-23fd-4729-9944-58264ef43564/8a2ebd5f-0857-43f9-b057-293deaf18bc0.rna_seq.genomic.gdc_realn.bam 9260242858 BAM hg38 af3e8a0e-23fd-4729-9944-58264ef43564 katmai C3L-00629.MethArray.Green.T C3L-00629 CM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0892796a-fc76-4af3-a325-6ac1c72ca01f/202184990008_R07C01_Grn.idat 13676216 IDAT NA 0892796a-fc76-4af3-a325-6ac1c72ca01f katmai C3L-00629.MethArray.Red.T C3L-00629 CM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8b4324ba-25a1-4025-a0f0-76495502d34a/202184990008_R07C01_Red.idat 13676216 IDAT NA 8b4324ba-25a1-4025-a0f0-76495502d34a katmai C3L-00629.miRNA-Seq.T.ARNA_vlMrQ0 C3L-00629 CM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/054f201f-a539-4fb2-8d75-1dfb11483969/181113_UNC31-K00269_0164_AH23NNBBXY_GTCCGC_S42_L004_R1_001.unaln.bam 110355841 BAM NA 054f201f-a539-4fb2-8d75-1dfb11483969 katmai @@ -935,10 +903,6 @@ C3L-00640.miRNA-Seq.A C3L-00640 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00640.miRNA-Seq.A.hg38 C3L-00640 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/03230024-88e7-4539-849f-3a2abeb8810f/9778b551-538d-49de-873d-3480ff36d93c_mirnaseq_gdc_realn.bam 256166602 BAM hg38 03230024-88e7-4539-849f-3a2abeb8810f katmai C3L-00640.miRNA-Seq.T C3L-00640 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/48c801c5-36b7-4856-b0c0-18b130aa0e0d/181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L001_R1_001.unaln.bam 194343137 BAM NA 48c801c5-36b7-4856-b0c0-18b130aa0e0d katmai C3L-00640.miRNA-Seq.T.hg38 C3L-00640 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/47d0e081-f2e3-4f35-9c81-1516fe07dd8f/8e057a91-a53b-4e85-bdf9-3a8bd834f4b5_mirnaseq_gdc_realn.bam 216877342 BAM hg38 47d0e081-f2e3-4f35-9c81-1516fe07dd8f katmai -C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dfa23859-8a3e-4f14-8018-d0269863c4e0/832ef78d-7629-46e0-862e-5d2e250ceb5e.rna_seq.genomic.gdc_realn.bam 8484009157 BAM hg38 dfa23859-8a3e-4f14-8018-d0269863c4e0 katmai -C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dfa23859-8a3e-4f14-8018-d0269863c4e0/832ef78d-7629-46e0-862e-5d2e250ceb5e.rna_seq.genomic.gdc_realn.bam 8484009157 BAM hg38 dfa23859-8a3e-4f14-8018-d0269863c4e0 katmai -C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/510bcf2a-44f5-4821-b885-db740a37594b/4164e0e9-8038-40a0-b5a9-61f9617e9135.rna_seq.genomic.gdc_realn.bam 6469999487 BAM hg38 510bcf2a-44f5-4821-b885-db740a37594b katmai -C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/510bcf2a-44f5-4821-b885-db740a37594b/4164e0e9-8038-40a0-b5a9-61f9617e9135.rna_seq.genomic.gdc_realn.bam 6469999487 BAM hg38 510bcf2a-44f5-4821-b885-db740a37594b katmai C3L-00671.MethArray.Green.T C3L-00671 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b67d9857-cd51-4422-8429-f35c8288ae83/202163550072_R04C01_Grn.idat 13676236 IDAT NA b67d9857-cd51-4422-8429-f35c8288ae83 katmai C3L-00671.MethArray.Red.T C3L-00671 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a3d5fa26-98a5-4a98-8966-b9daa6571a75/202163550072_R04C01_Red.idat 13676236 IDAT NA a3d5fa26-98a5-4a98-8966-b9daa6571a75 katmai C3L-00671.miRNA-Seq.T C3L-00671 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/399e1b57-9879-44e6-a54c-0a5a762908d3/181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L001_R1_001.unaln.bam 212390119 BAM NA 399e1b57-9879-44e6-a54c-0a5a762908d3 katmai @@ -1064,24 +1028,16 @@ C3L-00819.miRNA-Seq.A C3L-00819 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00819.miRNA-Seq.A.hg38 C3L-00819 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/780854af-cb5b-4a9d-9266-5aa19b9092e4/2bc43f48-0905-4772-8196-4c44362af840_mirnaseq_gdc_realn.bam 292007947 BAM hg38 780854af-cb5b-4a9d-9266-5aa19b9092e4 katmai C3L-00819.miRNA-Seq.T C3L-00819 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fca7cf7d-9e91-47b6-aee9-286bb135a755/181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L001_R1_001.unaln.bam 255318469 BAM NA fca7cf7d-9e91-47b6-aee9-286bb135a755 katmai C3L-00819.miRNA-Seq.T.hg38 C3L-00819 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/482a084e-1b7c-454d-a2f1-3d750ca9b21e/83b73a69-429c-4bcd-a1a3-b10278a2bbaa_mirnaseq_gdc_realn.bam 287605283 BAM hg38 482a084e-1b7c-454d-a2f1-3d750ca9b21e katmai -C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/113be54e-a6c2-41e4-8272-7009d3e80613/08e34e38-aac1-43b4-b243-9d30c58226b7.rna_seq.genomic.gdc_realn.bam 8364861683 BAM hg38 113be54e-a6c2-41e4-8272-7009d3e80613 katmai -C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/113be54e-a6c2-41e4-8272-7009d3e80613/08e34e38-aac1-43b4-b243-9d30c58226b7.rna_seq.genomic.gdc_realn.bam 8364861683 BAM hg38 113be54e-a6c2-41e4-8272-7009d3e80613 katmai -C3L-00819.RNA-Seq.genomic.T.hg38 C3L-00819 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a36bcdab-0680-4731-9cb6-fe009c8cf495/45752650-9ad1-4b90-8368-6fc7a9069fd0.rna_seq.genomic.gdc_realn.bam 8580423446 BAM hg38 a36bcdab-0680-4731-9cb6-fe009c8cf495 katmai -C3L-00819.RNA-Seq.genomic.T.hg38 C3L-00819 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a36bcdab-0680-4731-9cb6-fe009c8cf495/45752650-9ad1-4b90-8368-6fc7a9069fd0.rna_seq.genomic.gdc_realn.bam 8580423446 BAM hg38 a36bcdab-0680-4731-9cb6-fe009c8cf495 katmai C3L-00881.MethArray.Green.A C3L-00881 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7a1b614e-f590-4bb9-a70d-14b4962cc0e7/203561450054_R08C01_Grn.idat 13676216 IDAT NA 7a1b614e-f590-4bb9-a70d-14b4962cc0e7 katmai C3L-00881.MethArray.Green.T C3L-00881 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2b71b0bb-1f7d-47ff-a331-192a2675bd30/202178770008_R07C01_Grn.idat 13676231 IDAT NA 2b71b0bb-1f7d-47ff-a331-192a2675bd30 katmai C3L-00881.MethArray.Red.A C3L-00881 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/af81c781-bc2d-43ac-8935-b641b66caf26/203561450054_R08C01_Red.idat 13676216 IDAT NA af81c781-bc2d-43ac-8935-b641b66caf26 katmai C3L-00881.MethArray.Red.T C3L-00881 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b9f60daa-d40a-43ee-a8eb-4062e4ca4625/202178770008_R07C01_Red.idat 13676231 IDAT NA b9f60daa-d40a-43ee-a8eb-4062e4ca4625 katmai C3L-00881.miRNA-Seq.T C3L-00881 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cf7231b4-66b9-4278-bef8-03bf63def1cf/180924_UNC31-K00269_0154_AHWTMLBBXX_CTAGCT_S34_L002_R1_001.unaln.bam 310191925 BAM NA cf7231b4-66b9-4278-bef8-03bf63def1cf katmai C3L-00881.miRNA-Seq.T.hg38 C3L-00881 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1202a48e-468d-471f-9c95-99318507407d/226b9c1a-2f7b-49c7-92ff-c7d7b485d135_mirnaseq_gdc_realn.bam 342136754 BAM hg38 1202a48e-468d-471f-9c95-99318507407d katmai -C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0c23fdd3-6509-4531-95e2-39c059846f3d/2edf89b1-1c0e-4596-a033-d6e04d20f66d.rna_seq.genomic.gdc_realn.bam 8444203147 BAM hg38 0c23fdd3-6509-4531-95e2-39c059846f3d katmai -C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0c23fdd3-6509-4531-95e2-39c059846f3d/2edf89b1-1c0e-4596-a033-d6e04d20f66d.rna_seq.genomic.gdc_realn.bam 8444203147 BAM hg38 0c23fdd3-6509-4531-95e2-39c059846f3d katmai C3L-00885.MethArray.Green.T C3L-00885 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7b5a4cfe-3875-45d7-8632-9b3391cd9389/202184900104_R04C01_Grn.idat 13676256 IDAT NA 7b5a4cfe-3875-45d7-8632-9b3391cd9389 katmai C3L-00885.MethArray.Red.T C3L-00885 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/83349bd6-5a59-493c-9048-e593015ebb15/202184900104_R04C01_Red.idat 13676256 IDAT NA 83349bd6-5a59-493c-9048-e593015ebb15 katmai C3L-00885.miRNA-Seq.T C3L-00885 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/abc2d05b-8c01-49be-bbf0-711c6318eb61/181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L001_R1_001.unaln.bam 246438084 BAM NA abc2d05b-8c01-49be-bbf0-711c6318eb61 katmai C3L-00885.miRNA-Seq.T.hg38 C3L-00885 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6f3b209e-f4d2-4801-8c96-73266c57397a/dbb49abe-c651-419b-8df2-19bc9609c21c_mirnaseq_gdc_realn.bam 270064748 BAM hg38 6f3b209e-f4d2-4801-8c96-73266c57397a katmai -C3L-00885.RNA-Seq.genomic.T.hg38 C3L-00885 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/08b35111-c037-489c-b050-baaffa2f6615/68efa763-2fbd-4846-87e7-05554062c147.rna_seq.genomic.gdc_realn.bam 8447436791 BAM hg38 08b35111-c037-489c-b050-baaffa2f6615 katmai -C3L-00885.RNA-Seq.genomic.T.hg38 C3L-00885 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/08b35111-c037-489c-b050-baaffa2f6615/68efa763-2fbd-4846-87e7-05554062c147.rna_seq.genomic.gdc_realn.bam 8447436791 BAM hg38 08b35111-c037-489c-b050-baaffa2f6615 katmai C3L-00893.MethArray.Green.A C3L-00893 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b44d61f3-1864-486b-ae1c-967b537b6cec/203027390113_R08C01_Grn.idat 13676246 IDAT NA b44d61f3-1864-486b-ae1c-967b537b6cec katmai C3L-00893.MethArray.Green.T C3L-00893 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c2383c0b-9458-44ab-ae9e-a2e0d6bbd425/202184990069_R03C01_Grn.idat 13676226 IDAT NA c2383c0b-9458-44ab-ae9e-a2e0d6bbd425 katmai C3L-00893.MethArray.Red.A C3L-00893 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e2d50619-fbf6-4966-b505-d40adca18ffb/203027390113_R08C01_Red.idat 13676246 IDAT NA e2d50619-fbf6-4966-b505-d40adca18ffb katmai @@ -1190,8 +1146,6 @@ C3L-00928.MethArray.Red.A C3L-00928 PDA Methylation Array tissue_normal /diskmnt C3L-00928.MethArray.Red.T C3L-00928 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/24bb6c8b-f717-4a66-8388-5d6f6fd9fa08/202176300001_R04C01_Red.idat 13676216 IDAT NA 24bb6c8b-f717-4a66-8388-5d6f6fd9fa08 katmai C3L-00928.miRNA-Seq.T C3L-00928 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3713d65b-aa72-4e81-bc17-dcba312e3b9a/180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L003_R1_001.unaln.bam 326389033 BAM NA 3713d65b-aa72-4e81-bc17-dcba312e3b9a katmai C3L-00928.miRNA-Seq.T.hg38 C3L-00928 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/cf12de48-ec42-4d2c-8329-301b9c760e06/edc64397-dd53-46a9-a3db-b0fc2853e9df_mirnaseq_gdc_realn.bam 362867737 BAM hg38 cf12de48-ec42-4d2c-8329-301b9c760e06 katmai -C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6def6e24-e2a4-4a18-b1ad-c5a0c921f759/392ffa78-ab52-4eeb-964c-d1a2d06d3490.rna_seq.genomic.gdc_realn.bam 6475494604 BAM hg38 6def6e24-e2a4-4a18-b1ad-c5a0c921f759 katmai -C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6def6e24-e2a4-4a18-b1ad-c5a0c921f759/392ffa78-ab52-4eeb-964c-d1a2d06d3490.rna_seq.genomic.gdc_realn.bam 6475494604 BAM hg38 6def6e24-e2a4-4a18-b1ad-c5a0c921f759 katmai C3L-00930.MethArray.Green.T C3L-00930 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a3a7ec3-25b4-480b-970d-529427b63e1f/202184990063_R03C01_Grn.idat 13676226 IDAT NA 8a3a7ec3-25b4-480b-970d-529427b63e1f katmai C3L-00930.MethArray.Red.T C3L-00930 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ad319c63-a1c7-43a7-aa92-9cbde29778aa/202184990063_R03C01_Red.idat 13676226 IDAT NA ad319c63-a1c7-43a7-aa92-9cbde29778aa katmai C3L-00930.miRNA-Seq.T C3L-00930 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1a4f3541-4a60-4df1-9541-051e2928fa9e/190828_UNC32-K00270_0200_BH7GVJBBXY_ATGAGC_S148_L007_R1_001.unaln.bam 264742907 BAM NA 1a4f3541-4a60-4df1-9541-051e2928fa9e katmai @@ -1390,14 +1344,10 @@ C3L-01031.MethArray.Red.A C3L-01031 PDA Methylation Array tissue_normal /diskmnt C3L-01031.MethArray.Red.T C3L-01031 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d4d319d9-911c-4a15-b818-b3bf2133a66e/203220070082_R03C01_Red.idat 13676216 IDAT NA d4d319d9-911c-4a15-b818-b3bf2133a66e katmai C3L-01031.miRNA-Seq.T C3L-01031 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1aa17a45-f236-4e1a-8aac-2cc50045a892/181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 227915261 BAM NA 1aa17a45-f236-4e1a-8aac-2cc50045a892 katmai C3L-01031.miRNA-Seq.T.hg38 C3L-01031 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/df290789-88d2-40c9-8cd2-7b45e1503108/721c9c8a-a3bd-45c3-a48f-4deca349a523_mirnaseq_gdc_realn.bam 249699282 BAM hg38 df290789-88d2-40c9-8cd2-7b45e1503108 katmai -C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2b094258-d3a0-4c63-a962-7379922fbcd7/1522e63c-029f-4847-a261-6ddb648c79aa.rna_seq.genomic.gdc_realn.bam 8724107568 BAM hg38 2b094258-d3a0-4c63-a962-7379922fbcd7 katmai -C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2b094258-d3a0-4c63-a962-7379922fbcd7/1522e63c-029f-4847-a261-6ddb648c79aa.rna_seq.genomic.gdc_realn.bam 8724107568 BAM hg38 2b094258-d3a0-4c63-a962-7379922fbcd7 katmai C3L-01032.MethArray.Green.T.BULK_PNN8DJn C3L-01032 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5352929d-5535-4b00-b982-878411b63c06/203561620054_R06C01_Grn.idat 13676231 IDAT NA 5352929d-5535-4b00-b982-878411b63c06 katmai C3L-01032.MethArray.Red.T.BULK_PNN8DJn C3L-01032 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7b6f794c-f6e3-4b16-ab8e-00ba973c4b65/203561620054_R06C01_Red.idat 13676231 IDAT NA 7b6f794c-f6e3-4b16-ab8e-00ba973c4b65 katmai C3L-01032.miRNA-Seq.T C3L-01032 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/97f69125-efcc-4e5a-9416-5510fff2fd5a/190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L002_R1_001.unaln.bam 202131610 BAM NA 97f69125-efcc-4e5a-9416-5510fff2fd5a katmai C3L-01032.miRNA-Seq.T.hg38 C3L-01032 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/532ec148-d2c3-42df-8d24-b9a4a378fb83/89b8448a-02ed-45c9-9838-b41e58a9dfbe_mirnaseq_gdc_realn.bam 223690190 BAM hg38 532ec148-d2c3-42df-8d24-b9a4a378fb83 katmai -C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/b0c75e59-e3ae-4f50-ab57-508ff8470d25/196e93f1-0a02-45f5-838a-2d60eb18695c.rna_seq.genomic.gdc_realn.bam 17035648553 BAM hg38 b0c75e59-e3ae-4f50-ab57-508ff8470d25 katmai -C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b0c75e59-e3ae-4f50-ab57-508ff8470d25/196e93f1-0a02-45f5-838a-2d60eb18695c.rna_seq.genomic.gdc_realn.bam 17035648553 BAM hg38 b0c75e59-e3ae-4f50-ab57-508ff8470d25 katmai C3L-01033.MethArray.Green.T C3L-01033 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c3c45cb5-bf4b-400f-8066-8bef2305bc3d/203219670117_R04C01_Grn.idat 13676226 IDAT NA c3c45cb5-bf4b-400f-8066-8bef2305bc3d katmai C3L-01033.MethArray.Red.T C3L-01033 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/72ccf6d5-df17-4ed4-8b87-b4f8111d1b10/203219670117_R04C01_Red.idat 13676226 IDAT NA 72ccf6d5-df17-4ed4-8b87-b4f8111d1b10 katmai C3L-01033.miRNA-Seq.T C3L-01033 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ae1f5daf-b9de-413f-a7ab-b43744eb7076/190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L004_R1_001.unaln.bam 180494762 BAM NA ae1f5daf-b9de-413f-a7ab-b43744eb7076 katmai @@ -1411,15 +1361,12 @@ C3L-01036.MethArray.Red.A C3L-01036 PDA Methylation Array tissue_normal /diskmnt C3L-01036.MethArray.Red.T C3L-01036 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c5e62c41-8e1c-462a-a468-cf131d7d055a/203027390073_R07C01_Red.idat 13676226 IDAT NA c5e62c41-8e1c-462a-a468-cf131d7d055a katmai C3L-01036.miRNA-Seq.T C3L-01036 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d4849fc1-7178-44c7-91bc-50b9e876468b/181119_UNC31-K00269_0165_AH27WCBBXY_CACCGG_S6_L001_R1_001.unaln.bam 221932435 BAM NA d4849fc1-7178-44c7-91bc-50b9e876468b katmai C3L-01036.miRNA-Seq.T.hg38 C3L-01036 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1e2e2400-a414-438a-abba-2694928fe06e/61c7f248-2692-4cef-82c8-bdbeaf1b2c98_mirnaseq_gdc_realn.bam 241469725 BAM hg38 1e2e2400-a414-438a-abba-2694928fe06e katmai -C3L-01036.RNA-Seq.genomic.T.hg38 C3L-01036 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e2ba9b0f-fad4-4ef3-8cb1-75f2824234ef/7cfba2e8-63e8-41c9-ae4b-f8a4b3dce4d7.rna_seq.genomic.gdc_realn.bam 11485385380 BAM hg38 e2ba9b0f-fad4-4ef3-8cb1-75f2824234ef katmai -C3L-01036.RNA-Seq.genomic.T.hg38 C3L-01036 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e2ba9b0f-fad4-4ef3-8cb1-75f2824234ef/7cfba2e8-63e8-41c9-ae4b-f8a4b3dce4d7.rna_seq.genomic.gdc_realn.bam 11485385380 BAM hg38 e2ba9b0f-fad4-4ef3-8cb1-75f2824234ef katmai C3L-01037.MethArray.Green.A C3L-01037 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4b187400-f6c5-4bdc-b7d7-763e508d4070/203561620049_R08C01_Grn.idat 13676231 IDAT NA 4b187400-f6c5-4bdc-b7d7-763e508d4070 katmai C3L-01037.MethArray.Green.T C3L-01037 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5ba58da8-a5b9-42db-8d9f-ef94d763900c/203561620077_R07C01_Grn.idat 13676221 IDAT NA 5ba58da8-a5b9-42db-8d9f-ef94d763900c katmai C3L-01037.MethArray.Red.A C3L-01037 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3989e7d6-537c-4762-94e9-9d52e63bded8/203561620049_R08C01_Red.idat 13676231 IDAT NA 3989e7d6-537c-4762-94e9-9d52e63bded8 katmai C3L-01037.MethArray.Red.T C3L-01037 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3f6096b2-5a99-4120-9a01-ee58d95b7c32/203561620077_R07C01_Red.idat 13676221 IDAT NA 3f6096b2-5a99-4120-9a01-ee58d95b7c32 katmai C3L-01037.miRNA-Seq.T C3L-01037 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/27d6e65b-dc4f-42d8-a9ee-10e248c9fddd/190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L006_R1_001.unaln.bam 177920787 BAM NA 27d6e65b-dc4f-42d8-a9ee-10e248c9fddd katmai C3L-01037.miRNA-Seq.T.hg38 C3L-01037 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/97d6d853-4ca0-496e-819c-c3a632002b70/94cf66d7-3b58-430d-a806-a583536c2c03_mirnaseq_gdc_realn.bam 202211778 BAM hg38 97d6d853-4ca0-496e-819c-c3a632002b70 katmai -C3L-01037.RNA-Seq.genomic.T.hg38 C3L-01037 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a0604c6c-b27a-4390-a849-5a28be995a3d/4a58c017-68e2-4e67-8066-136572a36e8f.rna_seq.genomic.gdc_realn.bam 11189950204 BAM hg38 a0604c6c-b27a-4390-a849-5a28be995a3d katmai C3L-01039.RNA-Seq.genomic.T.BIOTEXT_XDDAO9V.hg38 C3L-01039 PDA RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f93f723e-4b61-4498-a8d7-22c46f370613/b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.genomic.gdc_realn.bam 9396708284 BAM hg38 f93f723e-4b61-4498-a8d7-22c46f370613 katmai C3L-01040.MethArray.Green.T C3L-01040 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7561727f-2db5-4d54-9e80-3dbec1e10bd6/203027390028_R06C01_Grn.idat 13676231 IDAT NA 7561727f-2db5-4d54-9e80-3dbec1e10bd6 katmai C3L-01040.MethArray.Red.T C3L-01040 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ff017231-75df-49ff-a006-59a6d68b665d/203027390028_R06C01_Red.idat 13676231 IDAT NA ff017231-75df-49ff-a006-59a6d68b665d katmai @@ -1465,32 +1412,24 @@ C3L-01051.MethArray.Red.A C3L-01051 PDA Methylation Array tissue_normal /diskmnt C3L-01051.MethArray.Red.T C3L-01051 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ae553b2b-bec3-4beb-b56b-1b85dbb12a5f/203028200104_R03C01_Red.idat 13676238 IDAT NA ae553b2b-bec3-4beb-b56b-1b85dbb12a5f katmai C3L-01051.miRNA-Seq.T C3L-01051 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e2e76107-273e-44c7-ad07-f4a2912ccbd2/181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L004_R1_001.unaln.bam 237231392 BAM NA e2e76107-273e-44c7-ad07-f4a2912ccbd2 katmai C3L-01051.miRNA-Seq.T.hg38 C3L-01051 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6bcd9512-1f8c-4c94-baa2-0fe0b7d6bf3b/d2c5b88f-3965-46b5-af3f-e3bfbb3a22f0_mirnaseq_gdc_realn.bam 264400126 BAM hg38 6bcd9512-1f8c-4c94-baa2-0fe0b7d6bf3b katmai -C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ee4aa03a-9b77-4f3c-8d67-8170d314c7a7/9eb27fe9-4d8e-4403-a0d0-a4f088e67ec7.rna_seq.genomic.gdc_realn.bam 9010787385 BAM hg38 ee4aa03a-9b77-4f3c-8d67-8170d314c7a7 katmai -C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ee4aa03a-9b77-4f3c-8d67-8170d314c7a7/9eb27fe9-4d8e-4403-a0d0-a4f088e67ec7.rna_seq.genomic.gdc_realn.bam 9010787385 BAM hg38 ee4aa03a-9b77-4f3c-8d67-8170d314c7a7 katmai C3L-01052.MethArray.Green.A C3L-01052 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/98b16edc-bf2a-4a3b-8d1c-ab7da728fbb1/203561450099_R08C01_Grn.idat 13676216 IDAT NA 98b16edc-bf2a-4a3b-8d1c-ab7da728fbb1 katmai C3L-01052.MethArray.Green.T C3L-01052 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/539c98b6-fe9e-48ef-bf2e-f52b02051cce/203028200101_R08C01_Grn.idat 13676241 IDAT NA 539c98b6-fe9e-48ef-bf2e-f52b02051cce katmai C3L-01052.MethArray.Red.A C3L-01052 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3f7a731e-1375-4f50-9454-c6355312daf7/203561450099_R08C01_Red.idat 13676216 IDAT NA 3f7a731e-1375-4f50-9454-c6355312daf7 katmai C3L-01052.MethArray.Red.T C3L-01052 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d3499a96-7f33-48dc-9837-36ce8cac375a/203028200101_R08C01_Red.idat 13676241 IDAT NA d3499a96-7f33-48dc-9837-36ce8cac375a katmai C3L-01052.miRNA-Seq.T C3L-01052 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dabaad35-3eb7-4bc7-b044-6527769c7727/181119_UNC31-K00269_0165_AH27WCBBXY_CACGAT_S7_L001_R1_001.unaln.bam 263435489 BAM NA dabaad35-3eb7-4bc7-b044-6527769c7727 katmai C3L-01052.miRNA-Seq.T.hg38 C3L-01052 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/54b65e26-16ba-4eec-86c0-3be0b363b559/e30bdd9b-fb52-4072-9d55-f7ec866497c6_mirnaseq_gdc_realn.bam 291425399 BAM hg38 54b65e26-16ba-4eec-86c0-3be0b363b559 katmai -C3L-01052.RNA-Seq.genomic.T.hg38 C3L-01052 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0bad2882-b1f0-406b-a046-e62f31594824/eefa86f4-691e-4df9-b4f0-ed3f33fa7e76.rna_seq.genomic.gdc_realn.bam 9048812215 BAM hg38 0bad2882-b1f0-406b-a046-e62f31594824 katmai -C3L-01052.RNA-Seq.genomic.T.hg38 C3L-01052 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0bad2882-b1f0-406b-a046-e62f31594824/eefa86f4-691e-4df9-b4f0-ed3f33fa7e76.rna_seq.genomic.gdc_realn.bam 9048812215 BAM hg38 0bad2882-b1f0-406b-a046-e62f31594824 katmai C3L-01053.MethArray.Green.A C3L-01053 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a611fa61-956f-4c58-a490-90f80272d028/203273630048_R08C01_Grn.idat 13676231 IDAT NA a611fa61-956f-4c58-a490-90f80272d028 katmai C3L-01053.MethArray.Green.T C3L-01053 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2385b9a1-10a1-486f-9127-3ce11be22986/203219720211_R08C01_Grn.idat 13676246 IDAT NA 2385b9a1-10a1-486f-9127-3ce11be22986 katmai C3L-01053.MethArray.Red.A C3L-01053 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9a225351-469e-40f5-afd4-ac8c61011074/203273630048_R08C01_Red.idat 13676231 IDAT NA 9a225351-469e-40f5-afd4-ac8c61011074 katmai C3L-01053.MethArray.Red.T C3L-01053 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f382c2a8-6a9d-4fdd-a77e-7833bc0b93a8/203219720211_R08C01_Red.idat 13676246 IDAT NA f382c2a8-6a9d-4fdd-a77e-7833bc0b93a8 katmai C3L-01053.miRNA-Seq.T C3L-01053 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/17493bc9-781b-4e63-9401-8f5ebf85fa5b/181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L004_R1_001.unaln.bam 247830813 BAM NA 17493bc9-781b-4e63-9401-8f5ebf85fa5b katmai C3L-01053.miRNA-Seq.T.hg38 C3L-01053 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/da7d969a-78ad-4fec-a296-248fe46a2f73/85694142-7852-4d41-aaa5-615c4ad67ae8_mirnaseq_gdc_realn.bam 282270192 BAM hg38 da7d969a-78ad-4fec-a296-248fe46a2f73 katmai -C3L-01053.RNA-Seq.genomic.T.hg38 C3L-01053 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ef008794-6bb2-49bc-8164-1ba14bd8fa60/0f0c0a97-560a-42af-852c-f80a46995e4d.rna_seq.genomic.gdc_realn.bam 9468897373 BAM hg38 ef008794-6bb2-49bc-8164-1ba14bd8fa60 katmai -C3L-01053.RNA-Seq.genomic.T.hg38 C3L-01053 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ef008794-6bb2-49bc-8164-1ba14bd8fa60/0f0c0a97-560a-42af-852c-f80a46995e4d.rna_seq.genomic.gdc_realn.bam 9468897373 BAM hg38 ef008794-6bb2-49bc-8164-1ba14bd8fa60 katmai C3L-01054.MethArray.Green.A C3L-01054 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/63b73522-ec47-4bff-9a73-ddd22812f0d7/203561620016_R08C01_Grn.idat 13676221 IDAT NA 63b73522-ec47-4bff-9a73-ddd22812f0d7 katmai C3L-01054.MethArray.Green.T C3L-01054 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/daf415ed-645b-405d-b0ad-43d1369977d7/203219670066_R01C01_Grn.idat 13676226 IDAT NA daf415ed-645b-405d-b0ad-43d1369977d7 katmai C3L-01054.MethArray.Red.A C3L-01054 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a4c64f26-a06e-4c3a-88f6-7671daa275e4/203561620016_R08C01_Red.idat 13676221 IDAT NA a4c64f26-a06e-4c3a-88f6-7671daa275e4 katmai C3L-01054.MethArray.Red.T C3L-01054 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/14446b2c-fdb7-4e5b-aa76-75d2ad61a290/203219670066_R01C01_Red.idat 13676226 IDAT NA 14446b2c-fdb7-4e5b-aa76-75d2ad61a290 katmai C3L-01054.miRNA-Seq.T C3L-01054 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/709f007c-0e3c-4eb2-8f05-076f621cf56b/181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L004_R1_001.unaln.bam 186836891 BAM NA 709f007c-0e3c-4eb2-8f05-076f621cf56b katmai C3L-01054.miRNA-Seq.T.hg38 C3L-01054 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/30a3b9f9-0b6c-49c3-abd6-47ea295a56d7/a08a48e3-77f1-41b7-b958-73a210dce709_mirnaseq_gdc_realn.bam 209682332 BAM hg38 30a3b9f9-0b6c-49c3-abd6-47ea295a56d7 katmai -C3L-01054.RNA-Seq.genomic.T.hg38 C3L-01054 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a0476954-aa58-4f46-aa25-b9de112eff27/3e8e5f59-f0b8-483e-a277-1169dce30b45.rna_seq.genomic.gdc_realn.bam 9725466270 BAM hg38 a0476954-aa58-4f46-aa25-b9de112eff27 katmai -C3L-01054.RNA-Seq.genomic.T.hg38 C3L-01054 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a0476954-aa58-4f46-aa25-b9de112eff27/3e8e5f59-f0b8-483e-a277-1169dce30b45.rna_seq.genomic.gdc_realn.bam 9725466270 BAM hg38 a0476954-aa58-4f46-aa25-b9de112eff27 katmai C3L-01061.MethArray.Green.T C3L-01061 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0a61b7ca-f718-449c-ac47-cb9d701168f9/203219640068_R05C01_Grn.idat 13676216 IDAT NA 0a61b7ca-f718-449c-ac47-cb9d701168f9 katmai C3L-01061.MethArray.Red.T C3L-01061 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/927ff2a1-01cd-45b5-98d4-ac80bcb07417/203219640068_R05C01_Red.idat 13676216 IDAT NA 927ff2a1-01cd-45b5-98d4-ac80bcb07417 katmai C3L-01061.miRNA-Seq.T C3L-01061 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fde4a079-68f5-432d-affc-1e280fe18aad/190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L008_R1_001.unaln.bam 334003471 BAM NA fde4a079-68f5-432d-affc-1e280fe18aad katmai @@ -1522,7 +1461,6 @@ C3L-01124.MethArray.Green.A C3L-01124 PDA Methylation Array tissue_normal /diskm C3L-01124.MethArray.Red.A C3L-01124 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/76f868e2-7e25-43da-9780-966481f95482/203561450054_R07C01_Red.idat 13676216 IDAT NA 76f868e2-7e25-43da-9780-966481f95482 katmai C3L-01124.miRNA-Seq.T C3L-01124 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/083f9e15-2e46-464c-a823-e0ee4801319b/190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L004_R1_001.unaln.bam 237728064 BAM NA 083f9e15-2e46-464c-a823-e0ee4801319b katmai C3L-01124.miRNA-Seq.T.hg38 C3L-01124 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6dec9110-8399-4520-b914-92abe16c6c99/9e9a91c6-6afb-41e2-856a-b8da7f41b36d_mirnaseq_gdc_realn.bam 268526312 BAM hg38 6dec9110-8399-4520-b914-92abe16c6c99 katmai -C3L-01124.RNA-Seq.genomic.T.hg38 C3L-01124 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3e5cc06e-3ef6-48fb-b6b7-a29560540898/1c558233-c17d-4ec8-9273-d988391b7aac.rna_seq.genomic.gdc_realn.bam 7759999178 BAM hg38 3e5cc06e-3ef6-48fb-b6b7-a29560540898 katmai C3L-01138.MethArray.Green.A C3L-01138 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/29fd5fa6-e314-4ba7-9b96-5cb5a014b13a/203273200080_R03C01_Grn.idat 13676206 IDAT NA 29fd5fa6-e314-4ba7-9b96-5cb5a014b13a katmai C3L-01138.MethArray.Green.T C3L-01138 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/49e300f2-6285-49fe-847f-cabc805965e4/203271750047_R01C01_Grn.idat 13676206 IDAT NA 49e300f2-6285-49fe-847f-cabc805965e4 katmai C3L-01138.MethArray.Red.A C3L-01138 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1ff5feaf-8ee4-4dbf-b454-f4c0b5a48eac/203273200080_R03C01_Red.idat 13676206 IDAT NA 1ff5feaf-8ee4-4dbf-b454-f4c0b5a48eac katmai @@ -1572,16 +1510,12 @@ C3L-01158.MethArray.Red.T.BULK_PNN43nl C3L-01158 PDA Methylation Array tumor /di C3L-01158.MethArray.Red.T.CORE_J66534l.core C3L-01158 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5c99572-c417-4d5f-b190-6be9d47555fb/203561450030_R03C01_Red.idat 13676216 IDAT NA f5c99572-c417-4d5f-b190-6be9d47555fb katmai C3L-01158.miRNA-Seq.T C3L-01158 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/31e8c10f-13ab-47a2-9e10-ed7187e28df0/190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L002_R1_001.unaln.bam 167468804 BAM NA 31e8c10f-13ab-47a2-9e10-ed7187e28df0 katmai C3L-01158.miRNA-Seq.T.hg38 C3L-01158 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9ab97b2e-880d-4227-87d9-68f84972e2bf/390f11e4-d8d0-41ba-8e37-b4ceceb124f4_mirnaseq_gdc_realn.bam 187473717 BAM hg38 9ab97b2e-880d-4227-87d9-68f84972e2bf katmai -C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/d7890766-18d3-427d-a2c8-2277f4ea91ed/8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.genomic.gdc_realn.bam 12188572936 BAM hg38 d7890766-18d3-427d-a2c8-2277f4ea91ed katmai -C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d7890766-18d3-427d-a2c8-2277f4ea91ed/8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.genomic.gdc_realn.bam 12188572936 BAM hg38 d7890766-18d3-427d-a2c8-2277f4ea91ed katmai C3L-01160.MethArray.Green.T.BULK_NkkyJMp C3L-01160 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1951c2f6-4401-471c-803e-6fd787e360cf/203561450073_R08C01_Grn.idat 13676221 IDAT NA 1951c2f6-4401-471c-803e-6fd787e360cf katmai C3L-01160.MethArray.Green.T.CORE_ERRmwz0.core C3L-01160 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7f160d98-c8ee-45b8-882f-9c3dd3af128d/203561450020_R02C01_Grn.idat 13676221 IDAT NA 7f160d98-c8ee-45b8-882f-9c3dd3af128d katmai C3L-01160.MethArray.Red.T.BULK_NkkyJMp C3L-01160 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0435ae8c-b09a-4e10-b693-36024236cc65/203561450073_R08C01_Red.idat 13676221 IDAT NA 0435ae8c-b09a-4e10-b693-36024236cc65 katmai C3L-01160.MethArray.Red.T.CORE_ERRmwz0.core C3L-01160 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20da77de-bb22-4592-b9d5-8d6703d68dc9/203561450020_R02C01_Red.idat 13676221 IDAT NA 20da77de-bb22-4592-b9d5-8d6703d68dc9 katmai C3L-01160.miRNA-Seq.T C3L-01160 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e3473974-ec7c-4133-b635-1ca02d4721c9/190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L002_R1_001.unaln.bam 221634763 BAM NA e3473974-ec7c-4133-b635-1ca02d4721c9 katmai C3L-01160.miRNA-Seq.T.hg38 C3L-01160 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/313d4c80-9294-44eb-b9a3-a782d4529e2b/fad624ff-e1cb-4c9f-a5fd-4c771225127d_mirnaseq_gdc_realn.bam 241614413 BAM hg38 313d4c80-9294-44eb-b9a3-a782d4529e2b katmai -C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/76ec29c6-fbcf-48a7-96ae-0d3adee6f52c/45ee9cab-619e-404f-8d91-32fa6a0f2e60.rna_seq.genomic.gdc_realn.bam 13460468845 BAM hg38 76ec29c6-fbcf-48a7-96ae-0d3adee6f52c katmai -C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/76ec29c6-fbcf-48a7-96ae-0d3adee6f52c/45ee9cab-619e-404f-8d91-32fa6a0f2e60.rna_seq.genomic.gdc_realn.bam 13460468845 BAM hg38 76ec29c6-fbcf-48a7-96ae-0d3adee6f52c katmai C3L-01182.RNA-Seq.R1.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/3364d291-2534-49ae-b9e4-536ea85d6c47/211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R1_001.fastq.gz 2683736462 FASTQ NA 3364d291-2534-49ae-b9e4-536ea85d6c47 katmai C3L-01182.RNA-Seq.R2.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/22838a11-4def-4406-a04d-b9cfdfee17d2/211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R2_001.fastq.gz 2896718250 FASTQ NA 22838a11-4def-4406-a04d-b9cfdfee17d2 katmai C3L-01187.MethArray.Green.Tbm C3L-01187 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/c2e662b9-310e-4962-aa84-1ec287040472/205555390128_R04C01_Grn.idat 13677955 IDAT NA c2e662b9-310e-4962-aa84-1ec287040472 katmai @@ -1827,10 +1761,6 @@ C3L-01328.miRNA-Seq.A C3L-01328 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-01328.miRNA-Seq.A.hg38 C3L-01328 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/4611d35f-f9ff-4025-9c32-cc4ae1596b21/bb421dec-3cf1-49b2-8ac4-478dd4812a1a_mirnaseq_gdc_realn.bam 305343322 BAM hg38 4611d35f-f9ff-4025-9c32-cc4ae1596b21 katmai C3L-01328.miRNA-Seq.T C3L-01328 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/464ff502-358d-43ec-99d7-a53966b0bf23/181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L006_R1_001.unaln.bam 204572258 BAM NA 464ff502-358d-43ec-99d7-a53966b0bf23 katmai C3L-01328.miRNA-Seq.T.hg38 C3L-01328 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/776ade15-0a7d-47ad-a266-abe67d006f65/0dd6d435-ec09-4873-890a-8c250eee5961_mirnaseq_gdc_realn.bam 224339939 BAM hg38 776ade15-0a7d-47ad-a266-abe67d006f65 katmai -C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/77b18d72-f08c-47ec-a786-d7a2ecb5c1b6/f1274a56-b5b2-4316-999f-5de0211fcf37.rna_seq.genomic.gdc_realn.bam 11353910760 BAM hg38 77b18d72-f08c-47ec-a786-d7a2ecb5c1b6 katmai -C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/77b18d72-f08c-47ec-a786-d7a2ecb5c1b6/f1274a56-b5b2-4316-999f-5de0211fcf37.rna_seq.genomic.gdc_realn.bam 11353910760 BAM hg38 77b18d72-f08c-47ec-a786-d7a2ecb5c1b6 katmai -C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3da74dc6-380b-4de0-8f9e-221a3cf79a4a/51a03355-1437-48f7-ac14-2c09f83cd89c.rna_seq.genomic.gdc_realn.bam 9451583241 BAM hg38 3da74dc6-380b-4de0-8f9e-221a3cf79a4a katmai -C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3da74dc6-380b-4de0-8f9e-221a3cf79a4a/51a03355-1437-48f7-ac14-2c09f83cd89c.rna_seq.genomic.gdc_realn.bam 9451583241 BAM hg38 3da74dc6-380b-4de0-8f9e-221a3cf79a4a katmai C3L-01330.MethArray.Green.A C3L-01330 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/eb12575f-a8a8-4c8c-a40d-f2e7331419f3/203027390105_R03C01_Grn.idat 13676226 IDAT NA eb12575f-a8a8-4c8c-a40d-f2e7331419f3 katmai C3L-01330.MethArray.Green.T C3L-01330 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0e25f43d-c19f-418d-bba3-f7bafbc9680f/202184900105_R08C01_Grn.idat 13676216 IDAT NA 0e25f43d-c19f-418d-bba3-f7bafbc9680f katmai C3L-01330.MethArray.Red.A C3L-01330 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/951f8d11-0a97-4f3d-9d4a-8f3a501f5eb3/203027390105_R03C01_Red.idat 13676226 IDAT NA 951f8d11-0a97-4f3d-9d4a-8f3a501f5eb3 katmai @@ -1861,10 +1791,6 @@ C3L-01453.miRNA-Seq.A C3L-01453 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-01453.miRNA-Seq.A.hg38 C3L-01453 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/5765fa1e-1ca3-4ef1-bfb1-d5f9fd22d598/bea7c68d-6582-42af-a2cc-8943e5c8f07b_mirnaseq_gdc_realn.bam 257514526 BAM hg38 5765fa1e-1ca3-4ef1-bfb1-d5f9fd22d598 katmai C3L-01453.miRNA-Seq.T C3L-01453 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/32a4c03f-0e98-441e-ab8e-95f0f410cdd7/181119_UNC31-K00269_0165_AH27WCBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 268638469 BAM NA 32a4c03f-0e98-441e-ab8e-95f0f410cdd7 katmai C3L-01453.miRNA-Seq.T.hg38 C3L-01453 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d9493524-f5e8-4750-9ee4-66e091be72e9/f7551238-09df-4fe1-a946-b8b981e2a833_mirnaseq_gdc_realn.bam 292556040 BAM hg38 d9493524-f5e8-4750-9ee4-66e091be72e9 katmai -C3L-01453.RNA-Seq.genomic.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/60d2f5c3-cace-4e07-96ed-504c20592200/51fc578f-5582-47bd-8652-1841fe392ebd.rna_seq.genomic.gdc_realn.bam 10070683229 BAM hg38 60d2f5c3-cace-4e07-96ed-504c20592200 katmai -C3L-01453.RNA-Seq.genomic.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/60d2f5c3-cace-4e07-96ed-504c20592200/51fc578f-5582-47bd-8652-1841fe392ebd.rna_seq.genomic.gdc_realn.bam 10070683229 BAM hg38 60d2f5c3-cace-4e07-96ed-504c20592200 katmai -C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c297eb07-04bd-4093-8dc5-0328f04c3073/60f7695e-1f45-4701-a9fa-8090d8c05234.rna_seq.genomic.gdc_realn.bam 8165927092 BAM hg38 c297eb07-04bd-4093-8dc5-0328f04c3073 katmai -C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c297eb07-04bd-4093-8dc5-0328f04c3073/60f7695e-1f45-4701-a9fa-8090d8c05234.rna_seq.genomic.gdc_realn.bam 8165927092 BAM hg38 c297eb07-04bd-4093-8dc5-0328f04c3073 katmai C3L-01455.MethArray.Green.A C3L-01455 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0c6af48c-d42d-421d-9464-f9042040a6a4/203220070157_R01C01_Grn.idat 13676216 IDAT NA 0c6af48c-d42d-421d-9464-f9042040a6a4 katmai C3L-01455.MethArray.Green.T C3L-01455 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f27a0620-189e-492e-9f4b-ed13f2a24a01/202234380069_R08C01_Grn.idat 13676246 IDAT NA f27a0620-189e-492e-9f4b-ed13f2a24a01 katmai C3L-01455.MethArray.Red.A C3L-01455 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3aa6a606-e750-4bba-855c-e9e5a1888690/203220070157_R01C01_Red.idat 13676216 IDAT NA 3aa6a606-e750-4bba-855c-e9e5a1888690 katmai @@ -1966,8 +1892,6 @@ C3L-01598.MethArray.Red.A C3L-01598 PDA Methylation Array tissue_normal /diskmnt C3L-01598.MethArray.Red.T.DEEP_rlvk0k C3L-01598 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/287d8fca-94a2-46f4-acac-8cbb4939ba11/202234370091_R04C01_Red.idat 13676231 IDAT NA 287d8fca-94a2-46f4-acac-8cbb4939ba11 katmai C3L-01598.miRNA-Seq.T C3L-01598 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ccae5475-86c2-4a4a-9ba5-6d471b414810/180828_UNC32-K00270_0112_AHWTLNBBXX_ACTTGA_S16_L006_R1_001.unaln.bam 230053299 BAM NA ccae5475-86c2-4a4a-9ba5-6d471b414810 katmai C3L-01598.miRNA-Seq.T.hg38 C3L-01598 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a0f984c1-b0eb-4061-b328-97194a630664/96fdce6d-82ff-4882-bd92-2156325ae4eb_mirnaseq_gdc_realn.bam 259370167 BAM hg38 a0f984c1-b0eb-4061-b328-97194a630664 katmai -C3L-01598.RNA-Seq.genomic.T.hg38 C3L-01598 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2ef13c16-b905-4b2c-951a-c39cecde06ca/76820715-bd07-43e6-8563-c8878332d448.rna_seq.genomic.gdc_realn.bam 9943024108 BAM hg38 2ef13c16-b905-4b2c-951a-c39cecde06ca katmai -C3L-01598.RNA-Seq.genomic.T.hg38 C3L-01598 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2ef13c16-b905-4b2c-951a-c39cecde06ca/76820715-bd07-43e6-8563-c8878332d448.rna_seq.genomic.gdc_realn.bam 9943024108 BAM hg38 2ef13c16-b905-4b2c-951a-c39cecde06ca katmai C3L-01599.MethArray.Green.T C3L-01599 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7fa67a9f-76f0-414e-a58b-ce8624051be7/202184900148_R03C01_Grn.idat 13676246 IDAT NA 7fa67a9f-76f0-414e-a58b-ce8624051be7 katmai C3L-01599.MethArray.Red.T C3L-01599 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/54f67752-b6c5-4243-ba79-e3bb1462c888/202184900148_R03C01_Red.idat 13676246 IDAT NA 54f67752-b6c5-4243-ba79-e3bb1462c888 katmai C3L-01599.miRNA-Seq.T C3L-01599 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/604485c8-d180-41f4-bff9-3e554b4888e0/181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L008_R1_001.unaln.bam 190013701 BAM NA 604485c8-d180-41f4-bff9-3e554b4888e0 katmai @@ -2045,10 +1969,6 @@ C3L-01637.miRNA-Seq.A C3L-01637 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-01637.miRNA-Seq.A.hg38 C3L-01637 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/027f406d-df5b-4241-9b5f-daf329925572/783bd6ee-102c-4778-bb1e-b2af80b71dc5_mirnaseq_gdc_realn.bam 239574490 BAM hg38 027f406d-df5b-4241-9b5f-daf329925572 katmai C3L-01637.miRNA-Seq.T C3L-01637 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5dde1548-8e04-4445-ad93-f60ef3bb2fbb/180724_UNC32-K00270_0106_BHWK3MBBXX_GGCTAC_S34_L008_R1_001.unaln.bam 297668846 BAM NA 5dde1548-8e04-4445-ad93-f60ef3bb2fbb katmai C3L-01637.miRNA-Seq.T.hg38 C3L-01637 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f51c8113-8dc0-4b9e-983d-094063c6faaa/c3e06381-19cc-40d8-9d04-09863dd38aac_mirnaseq_gdc_realn.bam 316856389 BAM hg38 f51c8113-8dc0-4b9e-983d-094063c6faaa katmai -C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b56dabaf-3f50-48d0-96e4-4d2dc7442a6b/30760d36-8126-4909-83e0-f04817c7e568.rna_seq.genomic.gdc_realn.bam 9873676588 BAM hg38 b56dabaf-3f50-48d0-96e4-4d2dc7442a6b katmai -C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b56dabaf-3f50-48d0-96e4-4d2dc7442a6b/30760d36-8126-4909-83e0-f04817c7e568.rna_seq.genomic.gdc_realn.bam 9873676588 BAM hg38 b56dabaf-3f50-48d0-96e4-4d2dc7442a6b katmai -C3L-01637.RNA-Seq.genomic.T.hg38 C3L-01637 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/122451c6-5592-4c1f-87fa-446007cfb7a4/04d431b5-1cec-4667-a79b-483a4e983c3b.rna_seq.genomic.gdc_realn.bam 8925114047 BAM hg38 122451c6-5592-4c1f-87fa-446007cfb7a4 katmai -C3L-01637.RNA-Seq.genomic.T.hg38 C3L-01637 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/122451c6-5592-4c1f-87fa-446007cfb7a4/04d431b5-1cec-4667-a79b-483a4e983c3b.rna_seq.genomic.gdc_realn.bam 8925114047 BAM hg38 122451c6-5592-4c1f-87fa-446007cfb7a4 katmai C3L-01639.MethArray.Green.T C3L-01639 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/80a05653-270a-4d9b-b0a7-4c4f2580fd71/202234380054_R04C01_Grn.idat 13676231 IDAT NA 80a05653-270a-4d9b-b0a7-4c4f2580fd71 katmai C3L-01639.MethArray.Red.T C3L-01639 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/538fbf9d-3d45-4297-b2b1-91cdbb47d7a0/202234380054_R04C01_Red.idat 13676231 IDAT NA 538fbf9d-3d45-4297-b2b1-91cdbb47d7a0 katmai C3L-01639.miRNA-Seq.A C3L-01639 UCEC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/368d2166-92bc-48be-860d-f935236a4ccb/181113_UNC31-K00269_0164_AH23NNBBXY_TCCCGA_S22_L005_R1_001.unaln.bam 265418180 BAM NA 368d2166-92bc-48be-860d-f935236a4ccb katmai @@ -2062,8 +1982,6 @@ C3L-01662.MethArray.Green.T C3L-01662 PDA Methylation Array tumor /diskmnt/Proje C3L-01662.MethArray.Red.T C3L-01662 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5f4946e1-9fc2-4fc0-8fb6-97f13358cd07/202234380099_R08C01_Red.idat 13676231 IDAT NA 5f4946e1-9fc2-4fc0-8fb6-97f13358cd07 katmai C3L-01662.miRNA-Seq.T C3L-01662 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/065c8287-8f6b-4f41-be00-a8adc12ef45a/180724_UNC32-K00270_0106_BHWK3MBBXX_CGGAAT_S13_L007_R1_001.unaln.bam 296493159 BAM NA 065c8287-8f6b-4f41-be00-a8adc12ef45a katmai C3L-01662.miRNA-Seq.T.hg38 C3L-01662 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4b5f4348-a236-40b0-896e-46d76c9f3364/e7b35aee-bee6-4beb-98ff-70f9b107c7dd_mirnaseq_gdc_realn.bam 320023181 BAM hg38 4b5f4348-a236-40b0-896e-46d76c9f3364 katmai -C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/76544f8a-da30-425d-96d9-dc84292c58a1/f6f916cf-5d2d-4908-b294-4ac79b803e7c.rna_seq.genomic.gdc_realn.bam 9830709164 BAM hg38 76544f8a-da30-425d-96d9-dc84292c58a1 katmai -C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/76544f8a-da30-425d-96d9-dc84292c58a1/f6f916cf-5d2d-4908-b294-4ac79b803e7c.rna_seq.genomic.gdc_realn.bam 9830709164 BAM hg38 76544f8a-da30-425d-96d9-dc84292c58a1 katmai C3L-01663.MethArray.Green.A C3L-01663 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/43779177-009b-4b30-bc32-d708f0e8e81b/203219670117_R02C01_Grn.idat 13676226 IDAT NA 43779177-009b-4b30-bc32-d708f0e8e81b katmai C3L-01663.MethArray.Green.T C3L-01663 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8b0ec21a-0810-46b3-874b-c2d2639661b3/202234370095_R07C01_Grn.idat 13676246 IDAT NA 8b0ec21a-0810-46b3-874b-c2d2639661b3 katmai C3L-01663.MethArray.Red.A C3L-01663 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0bd65a19-f8cf-4d41-abad-a95c7c0ee18a/203219670117_R02C01_Red.idat 13676226 IDAT NA 0bd65a19-f8cf-4d41-abad-a95c7c0ee18a katmai @@ -2123,8 +2041,6 @@ C3L-01687.MethArray.Green.T.DEEP_v6mW8g C3L-01687 PDA Methylation Array tumor /d C3L-01687.MethArray.Red.T.DEEP_v6mW8g C3L-01687 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0cf7d962-68c5-4e53-98af-8e1c93ac7b31/202234370091_R07C01_Red.idat 13676231 IDAT NA 0cf7d962-68c5-4e53-98af-8e1c93ac7b31 katmai C3L-01687.miRNA-Seq.T C3L-01687 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5f576970-48a9-4e50-ae00-b0cb6ef0ed7a/180828_UNC32-K00270_0112_AHWTLNBBXX_ATGTCA_S7_L006_R1_001.unaln.bam 275072884 BAM NA 5f576970-48a9-4e50-ae00-b0cb6ef0ed7a katmai C3L-01687.miRNA-Seq.T.hg38 C3L-01687 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8795eac6-d7ec-4d20-8ad2-363ff7f85087/4f465a6a-7726-486b-9a47-0d9ba0f7054c_mirnaseq_gdc_realn.bam 306088175 BAM hg38 8795eac6-d7ec-4d20-8ad2-363ff7f85087 katmai -C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b10de4bc-a760-48bf-a588-a074dfcac49a/5a1e238f-94df-4910-a2e9-76618dfbe4cd.rna_seq.genomic.gdc_realn.bam 8773991854 BAM hg38 b10de4bc-a760-48bf-a588-a074dfcac49a katmai -C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b10de4bc-a760-48bf-a588-a074dfcac49a/5a1e238f-94df-4910-a2e9-76618dfbe4cd.rna_seq.genomic.gdc_realn.bam 8773991854 BAM hg38 b10de4bc-a760-48bf-a588-a074dfcac49a katmai C3L-01689.MethArray.Green.A C3L-01689 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8d6337ec-3e04-4302-9a12-46473942c8d4/203561450025_R08C01_Grn.idat 13676221 IDAT NA 8d6337ec-3e04-4302-9a12-46473942c8d4 katmai C3L-01689.MethArray.Green.T.DEEP_v6DZXg C3L-01689 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d5168e96-b2d1-4ddf-80ff-07e54c04c511/202234380062_R07C01_Grn.idat 13676231 IDAT NA d5168e96-b2d1-4ddf-80ff-07e54c04c511 katmai C3L-01689.MethArray.Red.A C3L-01689 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6628ff3f-ced2-44ba-98f1-b97790950cd4/203561450025_R08C01_Red.idat 13676221 IDAT NA 6628ff3f-ced2-44ba-98f1-b97790950cd4 katmai @@ -2133,10 +2049,6 @@ C3L-01689.miRNA-Seq.A C3L-01689 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-01689.miRNA-Seq.A.hg38 C3L-01689 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/cd0d1fb0-f328-4498-97d0-6c20795379ba/6020a21d-600e-483b-81f8-cfee57009e80_mirnaseq_gdc_realn.bam 227635769 BAM hg38 cd0d1fb0-f328-4498-97d0-6c20795379ba katmai C3L-01689.miRNA-Seq.T C3L-01689 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a60cbfb-3cfe-4d46-a90e-e13bf0c6dae5/180828_UNC32-K00270_0112_AHWTLNBBXX_CCGTCC_S8_L006_R1_001.unaln.bam 267704212 BAM NA 8a60cbfb-3cfe-4d46-a90e-e13bf0c6dae5 katmai C3L-01689.miRNA-Seq.T.hg38 C3L-01689 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/60a8ea10-52e3-46af-a979-5b312f6752c8/293a311e-ac24-4afa-a7ad-d5e0b261bd70_mirnaseq_gdc_realn.bam 296343268 BAM hg38 60a8ea10-52e3-46af-a979-5b312f6752c8 katmai -C3L-01689.RNA-Seq.genomic.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/db3d5524-f3ed-406a-ab37-55e5b518339e/b85ed619-c7b4-4d0f-9aed-8af298d5836f.rna_seq.genomic.gdc_realn.bam 12240536150 BAM hg38 db3d5524-f3ed-406a-ab37-55e5b518339e katmai -C3L-01689.RNA-Seq.genomic.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/db3d5524-f3ed-406a-ab37-55e5b518339e/b85ed619-c7b4-4d0f-9aed-8af298d5836f.rna_seq.genomic.gdc_realn.bam 12240536150 BAM hg38 db3d5524-f3ed-406a-ab37-55e5b518339e katmai -C3L-01689.RNA-Seq.genomic.T.hg38 C3L-01689 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/20e771da-dcce-406a-9a70-713830fe6656/8202a451-384b-486f-97e4-eb105ef74cf0.rna_seq.genomic.gdc_realn.bam 9679393458 BAM hg38 20e771da-dcce-406a-9a70-713830fe6656 katmai -C3L-01689.RNA-Seq.genomic.T.hg38 C3L-01689 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20e771da-dcce-406a-9a70-713830fe6656/8202a451-384b-486f-97e4-eb105ef74cf0.rna_seq.genomic.gdc_realn.bam 9679393458 BAM hg38 20e771da-dcce-406a-9a70-713830fe6656 katmai C3L-01694.RNA-Seq.R1.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/c23e84a2-04e9-43f2-985b-066d931b4eb6/211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R1_001.fastq.gz 3641677214 FASTQ NA c23e84a2-04e9-43f2-985b-066d931b4eb6 katmai C3L-01694.RNA-Seq.R2.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/9495c32c-577f-4f2d-b673-9a76a4830300/211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R2_001.fastq.gz 3955993600 FASTQ NA 9495c32c-577f-4f2d-b673-9a76a4830300 katmai C3L-01696.MethArray.Green.Tbm C3L-01696 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/090922bd-5325-4c89-9a7c-3b5fac7b9ca9/203561620054_R05C01_Grn.idat 13676231 IDAT NA 090922bd-5325-4c89-9a7c-3b5fac7b9ca9 katmai @@ -2155,8 +2067,6 @@ C3L-01702.MethArray.Green.T.DEEP_v6Rm7r C3L-01702 PDA Methylation Array tumor /d C3L-01702.MethArray.Red.T.DEEP_v6Rm7r C3L-01702 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bd493cff-cbf2-48e4-865b-07287c6dab44/202234380050_R06C01_Red.idat 13676231 IDAT NA bd493cff-cbf2-48e4-865b-07287c6dab44 katmai C3L-01702.miRNA-Seq.T C3L-01702 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f074102a-9da6-4f33-b66e-f8649ab346ce/180828_UNC32-K00270_0112_AHWTLNBBXX_GTAGAG_S9_L006_R1_001.unaln.bam 284932613 BAM NA f074102a-9da6-4f33-b66e-f8649ab346ce katmai C3L-01702.miRNA-Seq.T.hg38 C3L-01702 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/77c2bae3-6a6c-455f-8c9e-f26b0b8a8ab5/1353f095-3b61-4410-a77f-43f4b366bc82_mirnaseq_gdc_realn.bam 311898874 BAM hg38 77c2bae3-6a6c-455f-8c9e-f26b0b8a8ab5 katmai -C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a949882f-65c2-40e4-a9c9-33c0baa11e44/90f3f026-abd6-4464-87dc-0daa7ef1ac4e.rna_seq.genomic.gdc_realn.bam 9541160140 BAM hg38 a949882f-65c2-40e4-a9c9-33c0baa11e44 katmai -C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a949882f-65c2-40e4-a9c9-33c0baa11e44/90f3f026-abd6-4464-87dc-0daa7ef1ac4e.rna_seq.genomic.gdc_realn.bam 9541160140 BAM hg38 a949882f-65c2-40e4-a9c9-33c0baa11e44 katmai C3L-01703.MethArray.Green.A C3L-01703 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f38ae311-48b0-44a7-8169-9884a6658642/203561450023_R01C01_Grn.idat 13676221 IDAT NA f38ae311-48b0-44a7-8169-9884a6658642 katmai C3L-01703.MethArray.Green.T.DEEP_v6Lv9r C3L-01703 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/714472e8-9bfe-4fe9-bed3-21e1a5715cbe/202234380064_R06C01_Grn.idat 13676231 IDAT NA 714472e8-9bfe-4fe9-bed3-21e1a5715cbe katmai C3L-01703.MethArray.Red.A C3L-01703 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3fd23c44-da6f-47f4-a499-0d8cdd15fc99/203561450023_R01C01_Red.idat 13676221 IDAT NA 3fd23c44-da6f-47f4-a499-0d8cdd15fc99 katmai @@ -2165,10 +2075,6 @@ C3L-01703.miRNA-Seq.A C3L-01703 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-01703.miRNA-Seq.A.hg38 C3L-01703 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/2b4d7f10-2222-45c1-bf14-8064c2518c0a/87a356a4-beb8-4f93-baee-d84614c8416a_mirnaseq_gdc_realn.bam 275503606 BAM hg38 2b4d7f10-2222-45c1-bf14-8064c2518c0a katmai C3L-01703.miRNA-Seq.T C3L-01703 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b41bc34e-54fa-4cd5-8441-cf3b3e435207/180828_UNC32-K00270_0112_AHWTLNBBXX_GTCCGC_S10_L006_R1_001.unaln.bam 252951231 BAM NA b41bc34e-54fa-4cd5-8441-cf3b3e435207 katmai C3L-01703.miRNA-Seq.T.hg38 C3L-01703 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7d697178-c538-4198-8df0-5a10262a5ca6/759c4173-56fc-4b7f-b390-9e1e3bef9bac_mirnaseq_gdc_realn.bam 284109858 BAM hg38 7d697178-c538-4198-8df0-5a10262a5ca6 katmai -C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/80246b5c-c745-4f2b-96a2-e66642c874c7/f0ab02e2-2e03-4249-8dd8-146fa65bb451.rna_seq.genomic.gdc_realn.bam 8063219263 BAM hg38 80246b5c-c745-4f2b-96a2-e66642c874c7 katmai -C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/80246b5c-c745-4f2b-96a2-e66642c874c7/f0ab02e2-2e03-4249-8dd8-146fa65bb451.rna_seq.genomic.gdc_realn.bam 8063219263 BAM hg38 80246b5c-c745-4f2b-96a2-e66642c874c7 katmai -C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/30af76b3-c2d0-467e-9f88-8285cf0c27cc/ca654cfd-9a89-4b6d-8737-191e6a0ce6cf.rna_seq.genomic.gdc_realn.bam 9165693676 BAM hg38 30af76b3-c2d0-467e-9f88-8285cf0c27cc katmai -C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/30af76b3-c2d0-467e-9f88-8285cf0c27cc/ca654cfd-9a89-4b6d-8737-191e6a0ce6cf.rna_seq.genomic.gdc_realn.bam 9165693676 BAM hg38 30af76b3-c2d0-467e-9f88-8285cf0c27cc katmai C3L-01729.MethArray.Green.T C3L-01729 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/df1d7fed-defc-4b3e-9fb5-f36758a13276/203219650157_R01C01_Grn.idat 13676221 IDAT NA df1d7fed-defc-4b3e-9fb5-f36758a13276 katmai C3L-01729.MethArray.Red.T C3L-01729 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/57da63e9-15ac-44bd-aa02-6698acc66fc2/203219650157_R01C01_Red.idat 13676221 IDAT NA 57da63e9-15ac-44bd-aa02-6698acc66fc2 katmai C3L-01729.miRNA-Seq.T C3L-01729 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/08841f34-39ae-453f-8da5-4081186260ba/181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 287627244 BAM NA 08841f34-39ae-453f-8da5-4081186260ba katmai @@ -2407,8 +2313,6 @@ C3L-01971.MethArray.Green.T C3L-01971 PDA Methylation Array tumor /diskmnt/Proje C3L-01971.MethArray.Red.T C3L-01971 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2c972e44-074c-45ce-ab4a-398d46f5d0b8/202234380061_R03C01_Red.idat 13676231 IDAT NA 2c972e44-074c-45ce-ab4a-398d46f5d0b8 katmai C3L-01971.miRNA-Seq.T C3L-01971 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8662e5d7-4605-42bf-8640-e6ff9b241480/181119_UNC31-K00269_0165_AH27WCBBXY_CCGTCC_S40_L003_R1_001.unaln.bam 247259075 BAM NA 8662e5d7-4605-42bf-8640-e6ff9b241480 katmai C3L-01971.miRNA-Seq.T.hg38 C3L-01971 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5469e56a-4901-444d-a077-ea11a415faaf/6196237e-70c1-4ac0-9ff4-b38520c8a854_mirnaseq_gdc_realn.bam 268553445 BAM hg38 5469e56a-4901-444d-a077-ea11a415faaf katmai -C3L-01971.RNA-Seq.genomic.T.hg38 C3L-01971 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/52197bf3-60ad-4ed5-b79f-aea18252f225/fc81ee9a-1c71-4cc9-8397-71db50e90529.rna_seq.genomic.gdc_realn.bam 8683521711 BAM hg38 52197bf3-60ad-4ed5-b79f-aea18252f225 katmai -C3L-01971.RNA-Seq.genomic.T.hg38 C3L-01971 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/52197bf3-60ad-4ed5-b79f-aea18252f225/fc81ee9a-1c71-4cc9-8397-71db50e90529.rna_seq.genomic.gdc_realn.bam 8683521711 BAM hg38 52197bf3-60ad-4ed5-b79f-aea18252f225 katmai C3L-01976.MethArray.Green.T C3L-01976 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/df60cad6-f204-4ac5-943b-1994d8573676/202234380058_R07C01_Grn.idat 13676231 IDAT NA df60cad6-f204-4ac5-943b-1994d8573676 katmai C3L-01976.MethArray.Red.T C3L-01976 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1d636947-9e6c-4cc4-bb1e-1ce2b9e2735f/202234380058_R07C01_Red.idat 13676231 IDAT NA 1d636947-9e6c-4cc4-bb1e-1ce2b9e2735f katmai C3L-01976.miRNA-Seq.A C3L-01976 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/28b103a1-4559-494a-a9ad-660fb967da61/181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 280822664 BAM NA 28b103a1-4559-494a-a9ad-660fb967da61 katmai @@ -2432,8 +2336,6 @@ C3L-02109.MethArray.Green.T C3L-02109 PDA Methylation Array tumor /diskmnt/Proje C3L-02109.MethArray.Red.T C3L-02109 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bd0493ee-c227-4a7a-996c-786526f7918d/203028200014_R07C01_Red.idat 13676226 IDAT NA bd0493ee-c227-4a7a-996c-786526f7918d katmai C3L-02109.miRNA-Seq.T C3L-02109 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/714a8d2c-00e4-41f2-b7ab-97e83963f5e4/181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L004_R1_001.unaln.bam 220206075 BAM NA 714a8d2c-00e4-41f2-b7ab-97e83963f5e4 katmai C3L-02109.miRNA-Seq.T.hg38 C3L-02109 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e54bcfa0-9eb7-4075-9fc4-ea86be5a1b72/36fd5dcf-c8e1-4a17-88fd-d0f54b250cf9_mirnaseq_gdc_realn.bam 247619653 BAM hg38 e54bcfa0-9eb7-4075-9fc4-ea86be5a1b72 katmai -C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a/5ba4631a-55a0-4e2e-a28c-10c1c30aeabf.rna_seq.genomic.gdc_realn.bam 7203899740 BAM hg38 1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a katmai -C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a/5ba4631a-55a0-4e2e-a28c-10c1c30aeabf.rna_seq.genomic.gdc_realn.bam 7203899740 BAM hg38 1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a katmai C3L-02112.MethArray.Green.A C3L-02112 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/90aad1ed-9609-463c-a103-cf01b5a256c1/203561620064_R08C01_Grn.idat 13676211 IDAT NA 90aad1ed-9609-463c-a103-cf01b5a256c1 katmai C3L-02112.MethArray.Green.T C3L-02112 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6f5f39d4-1e79-4a60-9afb-e85866b9f328/203028200023_R08C01_Grn.idat 13676229 IDAT NA 6f5f39d4-1e79-4a60-9afb-e85866b9f328 katmai C3L-02112.MethArray.Red.A C3L-02112 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/01568ef5-bb13-49e9-a85a-af3ff2b739de/203561620064_R08C01_Red.idat 13676211 IDAT NA 01568ef5-bb13-49e9-a85a-af3ff2b739de katmai @@ -2442,32 +2344,22 @@ C3L-02112.miRNA-Seq.A C3L-02112 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-02112.miRNA-Seq.A.hg38 C3L-02112 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/744524ab-3e96-4b9c-943f-0176c138696f/6020dd97-e5da-4d02-87f5-bee7f09de2db_mirnaseq_gdc_realn.bam 215799276 BAM hg38 744524ab-3e96-4b9c-943f-0176c138696f katmai C3L-02112.miRNA-Seq.T C3L-02112 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aecfbf98-4320-4605-a744-971c2b5e44a0/181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 209343639 BAM NA aecfbf98-4320-4605-a744-971c2b5e44a0 katmai C3L-02112.miRNA-Seq.T.hg38 C3L-02112 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/dc021f94-7b2d-47af-a1d2-3c288f548229/811ef88c-9863-4dc9-8e02-4f229ef9f96f_mirnaseq_gdc_realn.bam 235270543 BAM hg38 dc021f94-7b2d-47af-a1d2-3c288f548229 katmai -C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/79252f6d-aa9f-4374-abaa-2569940b15ab/52b3b187-4790-4e67-b91d-e0f32244dad5.rna_seq.genomic.gdc_realn.bam 9541545332 BAM hg38 79252f6d-aa9f-4374-abaa-2569940b15ab katmai -C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/79252f6d-aa9f-4374-abaa-2569940b15ab/52b3b187-4790-4e67-b91d-e0f32244dad5.rna_seq.genomic.gdc_realn.bam 9541545332 BAM hg38 79252f6d-aa9f-4374-abaa-2569940b15ab katmai -C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2d468da7-ec23-4b65-837c-54e131ae1660/2cbf9ecc-ed0c-41e0-b556-4bb8b9392ca6.rna_seq.genomic.gdc_realn.bam 9666997311 BAM hg38 2d468da7-ec23-4b65-837c-54e131ae1660 katmai -C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2d468da7-ec23-4b65-837c-54e131ae1660/2cbf9ecc-ed0c-41e0-b556-4bb8b9392ca6.rna_seq.genomic.gdc_realn.bam 9666997311 BAM hg38 2d468da7-ec23-4b65-837c-54e131ae1660 katmai C3L-02115.MethArray.Green.A C3L-02115 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/975bef82-84b3-4b03-a0ab-dfdb94fbc972/203561620159_R08C01_Grn.idat 13676216 IDAT NA 975bef82-84b3-4b03-a0ab-dfdb94fbc972 katmai C3L-02115.MethArray.Green.T C3L-02115 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/27f383a2-96b4-46b4-bef9-4716d1bc22d7/203027390081_R02C01_Grn.idat 13676226 IDAT NA 27f383a2-96b4-46b4-bef9-4716d1bc22d7 katmai C3L-02115.MethArray.Red.A C3L-02115 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1d53a6a7-c3c1-416e-89a7-96507183a3f0/203561620159_R08C01_Red.idat 13676216 IDAT NA 1d53a6a7-c3c1-416e-89a7-96507183a3f0 katmai C3L-02115.MethArray.Red.T C3L-02115 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/327f444d-e70a-4aaa-9e88-412cbf93eb32/203027390081_R02C01_Red.idat 13676226 IDAT NA 327f444d-e70a-4aaa-9e88-412cbf93eb32 katmai C3L-02115.miRNA-Seq.T C3L-02115 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5c2de421-27da-4b6f-b5f1-e9d6591a75f5/181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 251095764 BAM NA 5c2de421-27da-4b6f-b5f1-e9d6591a75f5 katmai C3L-02115.miRNA-Seq.T.hg38 C3L-02115 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8bc99a91-dc76-4f7f-bbbd-78b3e40b0fbf/9036480e-0b70-4225-9958-2cd4b8047daa_mirnaseq_gdc_realn.bam 277355365 BAM hg38 8bc99a91-dc76-4f7f-bbbd-78b3e40b0fbf katmai -C3L-02115.RNA-Seq.genomic.T.hg38 C3L-02115 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3421c949-55f9-4734-8322-ff8e21aad603/e2e681e2-655c-4ba5-9532-f290c421fa38.rna_seq.genomic.gdc_realn.bam 10901901666 BAM hg38 3421c949-55f9-4734-8322-ff8e21aad603 katmai -C3L-02115.RNA-Seq.genomic.T.hg38 C3L-02115 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3421c949-55f9-4734-8322-ff8e21aad603/e2e681e2-655c-4ba5-9532-f290c421fa38.rna_seq.genomic.gdc_realn.bam 10901901666 BAM hg38 3421c949-55f9-4734-8322-ff8e21aad603 katmai C3L-02116.MethArray.Green.A C3L-02116 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8c63ed6e-49a1-4e16-a086-c5f1cee491b6/203561620087_R08C01_Grn.idat 13676226 IDAT NA 8c63ed6e-49a1-4e16-a086-c5f1cee491b6 katmai C3L-02116.MethArray.Green.T C3L-02116 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/722b5f66-7681-494d-af76-3ba8cf9200b6/203028200101_R02C01_Grn.idat 13676226 IDAT NA 722b5f66-7681-494d-af76-3ba8cf9200b6 katmai C3L-02116.MethArray.Red.A C3L-02116 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/07127304-36e8-4a99-8acb-9c93248df496/203561620087_R08C01_Red.idat 13676226 IDAT NA 07127304-36e8-4a99-8acb-9c93248df496 katmai C3L-02116.MethArray.Red.T C3L-02116 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9a44a46c-7353-4639-957f-1cd0a1cb6ec7/203028200101_R02C01_Red.idat 13676226 IDAT NA 9a44a46c-7353-4639-957f-1cd0a1cb6ec7 katmai C3L-02116.miRNA-Seq.T C3L-02116 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fe76ebe1-37c2-48f7-acc5-14005a284cec/181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L004_R1_001.unaln.bam 262528202 BAM NA fe76ebe1-37c2-48f7-acc5-14005a284cec katmai C3L-02116.miRNA-Seq.T.hg38 C3L-02116 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fd170de7-b55a-4655-a6dc-3917a689be41/5fffd144-574e-454e-abe3-b73e2514c048_mirnaseq_gdc_realn.bam 289437655 BAM hg38 fd170de7-b55a-4655-a6dc-3917a689be41 katmai -C3L-02116.RNA-Seq.genomic.T.hg38 C3L-02116 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c6014153-d89e-4ec6-8ee9-f557fc7876b1/c187993f-0c59-4d13-af02-2c21327dde04.rna_seq.genomic.gdc_realn.bam 10052090807 BAM hg38 c6014153-d89e-4ec6-8ee9-f557fc7876b1 katmai -C3L-02116.RNA-Seq.genomic.T.hg38 C3L-02116 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c6014153-d89e-4ec6-8ee9-f557fc7876b1/c187993f-0c59-4d13-af02-2c21327dde04.rna_seq.genomic.gdc_realn.bam 10052090807 BAM hg38 c6014153-d89e-4ec6-8ee9-f557fc7876b1 katmai C3L-02118.MethArray.Green.T C3L-02118 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/69ba3ede-139e-4cee-83d8-44786be7ad93/203028200048_R02C01_Grn.idat 13676232 IDAT NA 69ba3ede-139e-4cee-83d8-44786be7ad93 katmai C3L-02118.MethArray.Red.T C3L-02118 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b6b2a99e-6936-4b38-9e29-57072598e880/203028200048_R02C01_Red.idat 13676232 IDAT NA b6b2a99e-6936-4b38-9e29-57072598e880 katmai C3L-02118.miRNA-Seq.T C3L-02118 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/68eb480b-6427-48c7-844a-3bf76e003342/181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 297335988 BAM NA 68eb480b-6427-48c7-844a-3bf76e003342 katmai C3L-02118.miRNA-Seq.T.hg38 C3L-02118 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d4aeb1e3-a3b3-4098-9fe2-e2dbe311aa5c/50b67588-62f4-42e0-a9b4-fcd672ad7466_mirnaseq_gdc_realn.bam 329588832 BAM hg38 d4aeb1e3-a3b3-4098-9fe2-e2dbe311aa5c katmai -C3L-02118.RNA-Seq.genomic.T.hg38 C3L-02118 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d7bc7aea-b86c-4bf6-a50e-4b88afb3c1f6/c386093b-8dd6-46b4-bcc4-c4a2b6fef2a6.rna_seq.genomic.gdc_realn.bam 8341607987 BAM hg38 d7bc7aea-b86c-4bf6-a50e-4b88afb3c1f6 katmai -C3L-02118.RNA-Seq.genomic.T.hg38 C3L-02118 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d7bc7aea-b86c-4bf6-a50e-4b88afb3c1f6/c386093b-8dd6-46b4-bcc4-c4a2b6fef2a6.rna_seq.genomic.gdc_realn.bam 8341607987 BAM hg38 d7bc7aea-b86c-4bf6-a50e-4b88afb3c1f6 katmai C3L-02119.MethArray.Green.T C3L-02119 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cdeea995-aad5-4591-bc96-a8f04168e77d/203281980233_R06C01_Grn.idat 13676211 IDAT NA cdeea995-aad5-4591-bc96-a8f04168e77d katmai C3L-02119.MethArray.Red.T C3L-02119 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/417ee91e-518b-4a81-846e-218a5a731ab6/203281980233_R06C01_Red.idat 13676211 IDAT NA 417ee91e-518b-4a81-846e-218a5a731ab6 katmai C3L-02119.miRNA-Seq.T C3L-02119 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4a9f0068-655c-4132-bf94-b492eaa66d96/190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L002_R1_001.unaln.bam 303658243 BAM NA 4a9f0068-655c-4132-bf94-b492eaa66d96 katmai @@ -2802,10 +2694,6 @@ C3L-02463.miRNA-Seq.A C3L-02463 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-02463.miRNA-Seq.A.hg38 C3L-02463 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/ca078290-c4f9-4c87-8a2e-8cf8ff53a4d7/6f2a11df-d210-4ee3-ad1a-41fcfd2b7026_mirnaseq_gdc_realn.bam 232042347 BAM hg38 ca078290-c4f9-4c87-8a2e-8cf8ff53a4d7 katmai C3L-02463.miRNA-Seq.T C3L-02463 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/58c8e5b7-d3db-4cd8-bd93-3acf148819c6/181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L004_R1_001.unaln.bam 216046436 BAM NA 58c8e5b7-d3db-4cd8-bd93-3acf148819c6 katmai C3L-02463.miRNA-Seq.T.hg38 C3L-02463 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/78994590-056a-4db8-abd0-f4fab5c66ebb/85c7be35-1b7e-404e-bc53-859b13d3fef8_mirnaseq_gdc_realn.bam 240026012 BAM hg38 78994590-056a-4db8-abd0-f4fab5c66ebb katmai -C3L-02463.RNA-Seq.genomic.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/da1776d9-da9f-4cfb-b2a3-84473e0882a2/1d5e7f9f-d92e-4a53-84aa-6c8a4bc6ddf8.rna_seq.genomic.gdc_realn.bam 9126237650 BAM hg38 da1776d9-da9f-4cfb-b2a3-84473e0882a2 katmai -C3L-02463.RNA-Seq.genomic.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/da1776d9-da9f-4cfb-b2a3-84473e0882a2/1d5e7f9f-d92e-4a53-84aa-6c8a4bc6ddf8.rna_seq.genomic.gdc_realn.bam 9126237650 BAM hg38 da1776d9-da9f-4cfb-b2a3-84473e0882a2 katmai -C3L-02463.RNA-Seq.genomic.T.hg38 C3L-02463 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/15b6e5e0-2a1f-49ca-93d6-e293c227afa5/27135ab8-fdb6-4556-bb44-8229b5c2e7e4.rna_seq.genomic.gdc_realn.bam 9940310080 BAM hg38 15b6e5e0-2a1f-49ca-93d6-e293c227afa5 katmai -C3L-02463.RNA-Seq.genomic.T.hg38 C3L-02463 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/15b6e5e0-2a1f-49ca-93d6-e293c227afa5/27135ab8-fdb6-4556-bb44-8229b5c2e7e4.rna_seq.genomic.gdc_realn.bam 9940310080 BAM hg38 15b6e5e0-2a1f-49ca-93d6-e293c227afa5 katmai C3L-02465.MethArray.Green.T C3L-02465 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bcbb1bcf-488b-4edf-a72b-c44f84bce074/203219670117_R01C01_Grn.idat 13676226 IDAT NA bcbb1bcf-488b-4edf-a72b-c44f84bce074 katmai C3L-02465.MethArray.Red.T C3L-02465 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e9c698f6-6da3-43ab-976e-6f3ae017bc5f/203219670117_R01C01_Red.idat 13676226 IDAT NA e9c698f6-6da3-43ab-976e-6f3ae017bc5f katmai C3L-02465.miRNA-Seq.T C3L-02465 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aae13628-4093-4c01-938f-661e8741e983/181119_UNC31-K00269_0165_AH27WCBBXY_CCGTCC_S40_L005_R1_001.unaln.bam 214530372 BAM NA aae13628-4093-4c01-938f-661e8741e983 katmai @@ -2947,7 +2835,6 @@ C3L-02604.MethArray.Green.T C3L-02604 PDA Methylation Array tumor /diskmnt/Proje C3L-02604.MethArray.Red.T C3L-02604 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d9e43f16-f2c2-48a1-b60c-fa4253b603b5/203561620132_R07C01_Red.idat 13676211 IDAT NA d9e43f16-f2c2-48a1-b60c-fa4253b603b5 katmai C3L-02604.miRNA-Seq.T C3L-02604 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/afd5c6e0-5e04-4b70-8908-65d8f9988e5b/190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L006_R1_001.unaln.bam 233539113 BAM NA afd5c6e0-5e04-4b70-8908-65d8f9988e5b katmai C3L-02604.miRNA-Seq.T.hg38 C3L-02604 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bdb0fe01-f85d-4058-ab12-f9887b03cd07/a0be44dd-7f14-43bc-ba05-806b82bece49_mirnaseq_gdc_realn.bam 261460697 BAM hg38 bdb0fe01-f85d-4058-ab12-f9887b03cd07 katmai -C3L-02604.RNA-Seq.genomic.T.hg38 C3L-02604 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fefa2761-a6f1-481c-af1c-3f20d0e21e62/c61d4a08-de5c-4135-99d6-a3edee8a2876.rna_seq.genomic.gdc_realn.bam 11646820668 BAM hg38 fefa2761-a6f1-481c-af1c-3f20d0e21e62 katmai C3L-02606.MethArray.Green.A C3L-02606 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/964966e1-a38a-4e98-8492-2617fcc34f20/203561620012_R08C01_Grn.idat 13676211 IDAT NA 964966e1-a38a-4e98-8492-2617fcc34f20 katmai C3L-02606.MethArray.Green.T C3L-02606 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/faeb084f-cdf6-43b6-8ef7-d19aa7b604d4/203028200093_R02C01_Grn.idat 13676226 IDAT NA faeb084f-cdf6-43b6-8ef7-d19aa7b604d4 katmai C3L-02606.MethArray.Red.A C3L-02606 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0ee407d7-0ea9-420c-8833-8284131738b4/203561620012_R08C01_Red.idat 13676211 IDAT NA 0ee407d7-0ea9-420c-8833-8284131738b4 katmai @@ -2956,10 +2843,6 @@ C3L-02606.miRNA-Seq.A C3L-02606 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-02606.miRNA-Seq.A.hg38 C3L-02606 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/59ef9aff-c557-4ea3-8bfc-c99936de562d/192b8f8d-71df-4d64-be78-a4b754ac9624_mirnaseq_gdc_realn.bam 203648206 BAM hg38 59ef9aff-c557-4ea3-8bfc-c99936de562d katmai C3L-02606.miRNA-Seq.T C3L-02606 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0744bebc-4c4d-4fa3-b67e-134c100d4823/181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 312675867 BAM NA 0744bebc-4c4d-4fa3-b67e-134c100d4823 katmai C3L-02606.miRNA-Seq.T.hg38 C3L-02606 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/31d01e5a-fd6f-4b93-9ac2-ecc3ea954853/c9c6b80f-1112-4e47-9865-d0745d771ef5_mirnaseq_gdc_realn.bam 342715829 BAM hg38 31d01e5a-fd6f-4b93-9ac2-ecc3ea954853 katmai -C3L-02606.RNA-Seq.genomic.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/07b60422-e713-4150-a516-2fbbca568387/c80b7ac2-8981-4008-8744-2de4119b8422.rna_seq.genomic.gdc_realn.bam 10958080421 BAM hg38 07b60422-e713-4150-a516-2fbbca568387 katmai -C3L-02606.RNA-Seq.genomic.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/07b60422-e713-4150-a516-2fbbca568387/c80b7ac2-8981-4008-8744-2de4119b8422.rna_seq.genomic.gdc_realn.bam 10958080421 BAM hg38 07b60422-e713-4150-a516-2fbbca568387 katmai -C3L-02606.RNA-Seq.genomic.T.hg38 C3L-02606 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9c2220a3-19a4-4060-8a8e-32639ff3cdb0/7423e2ed-edd8-4257-946a-0595ab8c3c67.rna_seq.genomic.gdc_realn.bam 7775431293 BAM hg38 9c2220a3-19a4-4060-8a8e-32639ff3cdb0 katmai -C3L-02606.RNA-Seq.genomic.T.hg38 C3L-02606 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9c2220a3-19a4-4060-8a8e-32639ff3cdb0/7423e2ed-edd8-4257-946a-0595ab8c3c67.rna_seq.genomic.gdc_realn.bam 7775431293 BAM hg38 9c2220a3-19a4-4060-8a8e-32639ff3cdb0 katmai C3L-02610.MethArray.Green.A C3L-02610 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/68ecffe3-cf1b-4b5a-a8f5-06bda3996c74/203561450068_R08C01_Grn.idat 13676211 IDAT NA 68ecffe3-cf1b-4b5a-a8f5-06bda3996c74 katmai C3L-02610.MethArray.Green.T C3L-02610 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a53642d2-b232-4d2a-abc7-859cd92dd32d/203028200104_R02C01_Grn.idat 13676238 IDAT NA a53642d2-b232-4d2a-abc7-859cd92dd32d katmai C3L-02610.MethArray.Red.A C3L-02610 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/008abcfc-4a31-4090-b342-78914e27b985/203561450068_R08C01_Red.idat 13676211 IDAT NA 008abcfc-4a31-4090-b342-78914e27b985 katmai @@ -2968,10 +2851,6 @@ C3L-02610.miRNA-Seq.A C3L-02610 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-02610.miRNA-Seq.A.hg38 C3L-02610 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/f634cd95-3a0e-4a80-8c34-183229a10668/79304fdd-90e8-4ca3-a8be-8e0678db0863_mirnaseq_gdc_realn.bam 189847727 BAM hg38 f634cd95-3a0e-4a80-8c34-183229a10668 katmai C3L-02610.miRNA-Seq.T C3L-02610 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/54d22624-96fc-4244-b572-c59ca63a47a6/181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 262196368 BAM NA 54d22624-96fc-4244-b572-c59ca63a47a6 katmai C3L-02610.miRNA-Seq.T.hg38 C3L-02610 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/385c13cf-963b-4c2d-a662-0f3e9ca243ca/77484bbd-aa98-4334-a708-c65f0033c11d_mirnaseq_gdc_realn.bam 292226022 BAM hg38 385c13cf-963b-4c2d-a662-0f3e9ca243ca katmai -C3L-02610.RNA-Seq.genomic.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9f488921-8d98-45ad-9c96-60d10db6e329/cb4cd471-5f27-474f-9e59-9ac5801c8343.rna_seq.genomic.gdc_realn.bam 10956819016 BAM hg38 9f488921-8d98-45ad-9c96-60d10db6e329 katmai -C3L-02610.RNA-Seq.genomic.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9f488921-8d98-45ad-9c96-60d10db6e329/cb4cd471-5f27-474f-9e59-9ac5801c8343.rna_seq.genomic.gdc_realn.bam 10956819016 BAM hg38 9f488921-8d98-45ad-9c96-60d10db6e329 katmai -C3L-02610.RNA-Seq.genomic.T.hg38 C3L-02610 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/db4ba2b8-b080-439b-b25e-b1f8d9fa5af1/8735e390-6bad-421d-aec6-567ea3a69665.rna_seq.genomic.gdc_realn.bam 7448587976 BAM hg38 db4ba2b8-b080-439b-b25e-b1f8d9fa5af1 katmai -C3L-02610.RNA-Seq.genomic.T.hg38 C3L-02610 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/db4ba2b8-b080-439b-b25e-b1f8d9fa5af1/8735e390-6bad-421d-aec6-567ea3a69665.rna_seq.genomic.gdc_realn.bam 7448587976 BAM hg38 db4ba2b8-b080-439b-b25e-b1f8d9fa5af1 katmai C3L-02613.MethArray.Green.A C3L-02613 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/228b4f8a-b417-496a-abac-2361c6c44171/203561450084_R08C01_Grn.idat 13676216 IDAT NA 228b4f8a-b417-496a-abac-2361c6c44171 katmai C3L-02613.MethArray.Green.T C3L-02613 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4862c146-9e92-4c77-a214-5a389a681686/203027390078_R03C01_Grn.idat 13676226 IDAT NA 4862c146-9e92-4c77-a214-5a389a681686 katmai C3L-02613.MethArray.Red.A C3L-02613 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d76a8b09-c68f-422c-a651-2e3538511583/203561450084_R08C01_Red.idat 13676216 IDAT NA d76a8b09-c68f-422c-a651-2e3538511583 katmai @@ -2980,10 +2859,6 @@ C3L-02613.miRNA-Seq.A C3L-02613 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-02613.miRNA-Seq.A.hg38 C3L-02613 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/58f6a181-29dd-4520-b1d1-f8991b5d5d4a/a77b73a5-927a-4f15-b6b7-5e443236873d_mirnaseq_gdc_realn.bam 199590653 BAM hg38 58f6a181-29dd-4520-b1d1-f8991b5d5d4a katmai C3L-02613.miRNA-Seq.T C3L-02613 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4719334a-8d99-4da5-ab31-e40a8d4b64e6/181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 206711433 BAM NA 4719334a-8d99-4da5-ab31-e40a8d4b64e6 katmai C3L-02613.miRNA-Seq.T.hg38 C3L-02613 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e672995e-8358-406d-abfc-ad4fa3a94430/f436c597-6ce0-4729-9d79-6acec46961ea_mirnaseq_gdc_realn.bam 229044470 BAM hg38 e672995e-8358-406d-abfc-ad4fa3a94430 katmai -C3L-02613.RNA-Seq.genomic.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6aea3e7b-d83c-4b3e-aabd-0b769e45e91b/34f88826-9e4a-4c4b-b811-e080afff9adb.rna_seq.genomic.gdc_realn.bam 7295694729 BAM hg38 6aea3e7b-d83c-4b3e-aabd-0b769e45e91b katmai -C3L-02613.RNA-Seq.genomic.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6aea3e7b-d83c-4b3e-aabd-0b769e45e91b/34f88826-9e4a-4c4b-b811-e080afff9adb.rna_seq.genomic.gdc_realn.bam 7295694729 BAM hg38 6aea3e7b-d83c-4b3e-aabd-0b769e45e91b katmai -C3L-02613.RNA-Seq.genomic.T.hg38 C3L-02613 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/82a352a9-f58d-4123-adb7-0111cbb84d16/e25ffce8-aab9-4cf5-8f67-0743bcaf285d.rna_seq.genomic.gdc_realn.bam 8127216519 BAM hg38 82a352a9-f58d-4123-adb7-0111cbb84d16 katmai -C3L-02613.RNA-Seq.genomic.T.hg38 C3L-02613 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/82a352a9-f58d-4123-adb7-0111cbb84d16/e25ffce8-aab9-4cf5-8f67-0743bcaf285d.rna_seq.genomic.gdc_realn.bam 8127216519 BAM hg38 82a352a9-f58d-4123-adb7-0111cbb84d16 katmai C3L-02616.MethArray.Green.A C3L-02616 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f8a09345-9367-4afc-a614-35a6cbaa56db/203219650136_R04C01_Grn.idat 13676236 IDAT NA f8a09345-9367-4afc-a614-35a6cbaa56db katmai C3L-02616.MethArray.Green.T C3L-02616 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/65abfd21-97b4-4c01-9503-00df09c9eedc/203219720211_R04C01_Grn.idat 13676245 IDAT NA 65abfd21-97b4-4c01-9503-00df09c9eedc katmai C3L-02616.MethArray.Red.A C3L-02616 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1d3e1816-32a3-46ea-8960-dc69b204aa48/203219650136_R04C01_Red.idat 13676236 IDAT NA 1d3e1816-32a3-46ea-8960-dc69b204aa48 katmai @@ -3141,7 +3016,6 @@ C3L-02701.MethArray.Green.T C3L-02701 PDA Methylation Array tumor /diskmnt/Proje C3L-02701.MethArray.Red.T C3L-02701 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e8d10bc9-ab17-4f08-adb4-21d548f2a41d/203561450041_R06C01_Red.idat 13676216 IDAT NA e8d10bc9-ab17-4f08-adb4-21d548f2a41d katmai C3L-02701.miRNA-Seq.T C3L-02701 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/df6d47e2-755b-4f99-94c8-8683551f6450/190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L004_R1_001.unaln.bam 280665592 BAM NA df6d47e2-755b-4f99-94c8-8683551f6450 katmai C3L-02701.miRNA-Seq.T.hg38 C3L-02701 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/38e08549-c188-4e0c-9a65-badeaf009a46/036f56d3-7235-4027-96ca-c0d58460c6c5_mirnaseq_gdc_realn.bam 317852009 BAM hg38 38e08549-c188-4e0c-9a65-badeaf009a46 katmai -C3L-02701.RNA-Seq.genomic.T.hg38 C3L-02701 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0b0f648b-fa8d-489c-8895-a0634f2ab29a/29ddf312-1255-43fb-b15e-86014e387d71.rna_seq.genomic.gdc_realn.bam 8681219436 BAM hg38 0b0f648b-fa8d-489c-8895-a0634f2ab29a katmai C3L-02704.MethArray.Green.T C3L-02704 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a6bb4aa5-859a-4e6f-8b8b-a9d67d5eef10/203219650136_R05C01_Grn.idat 13676236 IDAT NA a6bb4aa5-859a-4e6f-8b8b-a9d67d5eef10 katmai C3L-02704.MethArray.Red.T C3L-02704 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f23bdbf7-7064-43d1-a2fa-45afa7f10484/203219650136_R05C01_Red.idat 13676236 IDAT NA f23bdbf7-7064-43d1-a2fa-45afa7f10484 katmai C3L-02704.miRNA-Seq.T C3L-02704 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7fd57ea2-72de-43d6-89ec-c291b4fffee0/181219_UNC31-K00269_0173_BHYGJJBBXX_CATGGC_S33_L004_R1_001.unaln.bam 211477747 BAM NA 7fd57ea2-72de-43d6-89ec-c291b4fffee0 katmai @@ -3195,8 +3069,6 @@ C3L-02809.miRNA-Seq.A C3L-02809 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-02809.miRNA-Seq.A.hg38 C3L-02809 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/7365e5f0-a2af-4ad1-8e7a-08d074761d0a/ef83cc65-3e3f-4092-a4fe-592f1a8c9948_mirnaseq_gdc_realn.bam 250523542 BAM hg38 7365e5f0-a2af-4ad1-8e7a-08d074761d0a katmai C3L-02809.miRNA-Seq.T C3L-02809 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d266c728-5f2d-4f88-93fc-275f604ffa61/190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L006_R1_001.unaln.bam 166126529 BAM NA d266c728-5f2d-4f88-93fc-275f604ffa61 katmai C3L-02809.miRNA-Seq.T.hg38 C3L-02809 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/768835f8-4785-405e-843f-cfa56106cb4b/1aa3fda7-744d-443b-8907-e653ee5056e0_mirnaseq_gdc_realn.bam 188227635 BAM hg38 768835f8-4785-405e-843f-cfa56106cb4b katmai -C3L-02809.RNA-Seq.genomic.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/31c682c3-c87d-4301-bfd6-ddc3694e8af4/49be3808-7c4e-4923-8b49-500d9330adc6.rna_seq.genomic.gdc_realn.bam 7019029355 BAM hg38 31c682c3-c87d-4301-bfd6-ddc3694e8af4 katmai -C3L-02809.RNA-Seq.genomic.T.hg38 C3L-02809 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f2902704-9903-4b04-a0f0-4d78c8d28624/bbc34342-a620-4d54-bbd8-19dddcc49f7e.rna_seq.genomic.gdc_realn.bam 9129776120 BAM hg38 f2902704-9903-4b04-a0f0-4d78c8d28624 katmai C3L-02834.MethArray.Green.A C3L-02834 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/35c716c2-7551-4097-a2d4-24168cd74249/203219670147_R05C01_Grn.idat 13676236 IDAT NA 35c716c2-7551-4097-a2d4-24168cd74249 katmai C3L-02834.MethArray.Green.T C3L-02834 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/83996f3d-b9b9-46de-97cd-da50e3bb884f/203219670150_R05C01_Grn.idat 13676230 IDAT NA 83996f3d-b9b9-46de-97cd-da50e3bb884f katmai C3L-02834.MethArray.Red.A C3L-02834 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d5372327-ccd9-4e83-8207-7e6913659f9a/203219670147_R05C01_Red.idat 13676236 IDAT NA d5372327-ccd9-4e83-8207-7e6913659f9a katmai @@ -3242,7 +3114,6 @@ C3L-02890.MethArray.Green.T C3L-02890 PDA Methylation Array tumor /diskmnt/Proje C3L-02890.MethArray.Red.T C3L-02890 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/718996ff-e713-40d7-8bdb-38c9e40a5f34/203561620008_R06C01_Red.idat 13676236 IDAT NA 718996ff-e713-40d7-8bdb-38c9e40a5f34 katmai C3L-02890.miRNA-Seq.T C3L-02890 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/07e60f8e-2863-4c0d-b060-366547e9b06a/190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L005_R1_001.unaln.bam 241719651 BAM NA 07e60f8e-2863-4c0d-b060-366547e9b06a katmai C3L-02890.miRNA-Seq.T.hg38 C3L-02890 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/680dc196-6446-4352-ac94-6f80f2eb2d70/aa4b1d34-d650-4d6d-beb1-29960c9bde17_mirnaseq_gdc_realn.bam 272577730 BAM hg38 680dc196-6446-4352-ac94-6f80f2eb2d70 katmai -C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4f7a16a8-5f47-440b-9c14-cd93c403ea68/2027f021-88f5-487d-8df3-c91c4b203e2f.rna_seq.genomic.gdc_realn.bam 8744825521 BAM hg38 4f7a16a8-5f47-440b-9c14-cd93c403ea68 katmai C3L-02891.MethArray.Green.A C3L-02891 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c5ba1306-03ef-4bf8-b7f6-1316cca10f39/203219640102_R05C01_Grn.idat 13676221 IDAT NA c5ba1306-03ef-4bf8-b7f6-1316cca10f39 katmai C3L-02891.MethArray.Green.T C3L-02891 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/df92a3ba-f783-41b7-9e18-205081cdbfbc/203219670180_R05C01_Grn.idat 13676242 IDAT NA df92a3ba-f783-41b7-9e18-205081cdbfbc katmai C3L-02891.MethArray.Red.A C3L-02891 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3c6c9a69-90d8-43a6-8b32-33016e9cf967/203219640102_R05C01_Red.idat 13676221 IDAT NA 3c6c9a69-90d8-43a6-8b32-33016e9cf967 katmai @@ -3262,15 +3133,12 @@ C3L-02894.MethArray.Red.T C3L-02894 UCEC Methylation Array tumor /diskmnt/Projec C3L-02894.miRNA-Seq.T C3L-02894 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fe3131b9-7f71-479d-8ca7-eb9c9a3d205e/190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L004_R1_001.unaln.bam 150901424 BAM NA fe3131b9-7f71-479d-8ca7-eb9c9a3d205e katmai C3L-02897.miRNA-Seq.T C3L-02897 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/57e90727-1ce1-4d1d-8844-1d48d3c4d33e/190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L006_R1_001.unaln.bam 173523011 BAM NA 57e90727-1ce1-4d1d-8844-1d48d3c4d33e katmai C3L-02897.miRNA-Seq.T.hg38 C3L-02897 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/53a4d217-2569-47e1-87a7-6caafcccba63/4b763714-284e-4291-8a50-ac1a9f7de21b_mirnaseq_gdc_realn.bam 196554601 BAM hg38 53a4d217-2569-47e1-87a7-6caafcccba63 katmai -C3L-02897.RNA-Seq.genomic.T.hg38 C3L-02897 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4768ebaf-1353-40b4-80b9-042031e2fdd2/9dba7e2c-3e24-4dfe-9945-95abfc684fd6.rna_seq.genomic.gdc_realn.bam 10232861477 BAM hg38 4768ebaf-1353-40b4-80b9-042031e2fdd2 katmai C3L-02899.MethArray.Green.A C3L-02899 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4e88667b-d205-4eaf-a717-bde6d09d151b/203561450046_R07C01_Grn.idat 13676211 IDAT NA 4e88667b-d205-4eaf-a717-bde6d09d151b katmai C3L-02899.MethArray.Red.A C3L-02899 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c1d76bc8-d0c8-45b1-8384-ee605dfccabd/203561450046_R07C01_Red.idat 13676211 IDAT NA c1d76bc8-d0c8-45b1-8384-ee605dfccabd katmai C3L-02899.miRNA-Seq.A C3L-02899 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b88dc1b1-eddc-4c55-9aff-d5c094bf3950/190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L002_R1_001.unaln.bam 295752248 BAM NA b88dc1b1-eddc-4c55-9aff-d5c094bf3950 katmai C3L-02899.miRNA-Seq.A.hg38 C3L-02899 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/298bce26-73c6-4f22-87c2-31a6af566cc1/7775143e-2d32-4967-9eb0-81229b088238_mirnaseq_gdc_realn.bam 333995918 BAM hg38 298bce26-73c6-4f22-87c2-31a6af566cc1 katmai C3L-02899.miRNA-Seq.T C3L-02899 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7a16fc15-4e40-4571-ac1c-10c16020a475/190712_UNC32-K00270_0192_BH7HL3BBXY_ATTCCT_S3_L006_R1_001.unaln.bam 183927635 BAM NA 7a16fc15-4e40-4571-ac1c-10c16020a475 katmai C3L-02899.miRNA-Seq.T.hg38 C3L-02899 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/aada5e60-54eb-4ba7-989e-e1d7f58a740e/538b1edf-ed98-408e-a04a-325816db905d_mirnaseq_gdc_realn.bam 210166735 BAM hg38 aada5e60-54eb-4ba7-989e-e1d7f58a740e katmai -C3L-02899.RNA-Seq.genomic.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c1208185-f3e4-40fa-861d-2895e15b5775/51f0b4b9-c890-4780-a1ac-c10c698e84d2.rna_seq.genomic.gdc_realn.bam 7721118551 BAM hg38 c1208185-f3e4-40fa-861d-2895e15b5775 katmai -C3L-02899.RNA-Seq.genomic.T.hg38 C3L-02899 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/177d3315-d809-4e66-bb65-290947d1a69c/956fcb18-2bdc-45f7-9bcd-f84a8ca62c14.rna_seq.genomic.gdc_realn.bam 11761820590 BAM hg38 177d3315-d809-4e66-bb65-290947d1a69c katmai C3L-02900.MethArray.Green.T C3L-02900 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/217b94af-0969-492a-8ad1-98373c583823/203219650071_R04C01_Grn.idat 13676211 IDAT NA 217b94af-0969-492a-8ad1-98373c583823 katmai C3L-02900.MethArray.Red.T C3L-02900 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/52ad2a04-e59e-446d-a8d5-a468dbbcb0aa/203219650071_R04C01_Red.idat 13676211 IDAT NA 52ad2a04-e59e-446d-a8d5-a468dbbcb0aa katmai C3L-02900.miRNA-Seq.T C3L-02900 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aa55b363-37b3-4110-890a-29dd4cc28072/190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L008_R1_001.unaln.bam 270496443 BAM NA aa55b363-37b3-4110-890a-29dd4cc28072 katmai @@ -3375,18 +3243,14 @@ C3L-03123.miRNA-Seq.A C3L-03123 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-03123.miRNA-Seq.A.hg38 C3L-03123 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/e696e253-3a7f-4b0e-aad7-c19f56a0ee3b/11925c58-8d29-4a1c-aafe-8a676cb3dcdb_mirnaseq_gdc_realn.bam 265172416 BAM hg38 e696e253-3a7f-4b0e-aad7-c19f56a0ee3b katmai C3L-03123.miRNA-Seq.T C3L-03123 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dc11bb99-26f8-4117-8584-a46365377b1b/190712_UNC32-K00270_0192_BH7HL3BBXY_CACTCA_S8_L006_R1_001.unaln.bam 193236232 BAM NA dc11bb99-26f8-4117-8584-a46365377b1b katmai C3L-03123.miRNA-Seq.T.hg38 C3L-03123 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6b590371-378b-43ee-8338-81ec7bd2ffa2/4410d350-40fb-42b8-ad2f-53d72fd5223c_mirnaseq_gdc_realn.bam 219357750 BAM hg38 6b590371-378b-43ee-8338-81ec7bd2ffa2 katmai -C3L-03123.RNA-Seq.genomic.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/09988a88-ee30-49b8-9810-a14b1bb239ba/144b7ad6-096e-4528-a619-a9bb32ce5728.rna_seq.genomic.gdc_realn.bam 8253092852 BAM hg38 09988a88-ee30-49b8-9810-a14b1bb239ba katmai -C3L-03123.RNA-Seq.genomic.T.hg38 C3L-03123 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ee866afa-e0bf-477a-b6a9-9fefffbeeb63/02c76612-160d-421e-9e2c-6a80d3a5c863.rna_seq.genomic.gdc_realn.bam 8264431294 BAM hg38 ee866afa-e0bf-477a-b6a9-9fefffbeeb63 katmai C3L-03126.MethArray.Green.T C3L-03126 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/166572b6-60d4-4b88-a68d-83b9f1381301/203561450103_R06C01_Grn.idat 13676216 IDAT NA 166572b6-60d4-4b88-a68d-83b9f1381301 katmai C3L-03126.MethArray.Red.T C3L-03126 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d55f612f-37ea-43c6-8879-1b01321c0c72/203561450103_R06C01_Red.idat 13676216 IDAT NA d55f612f-37ea-43c6-8879-1b01321c0c72 katmai C3L-03126.miRNA-Seq.T C3L-03126 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/61dfad13-1ec5-433e-8599-9023ad1c02b4/190712_UNC32-K00270_0192_BH7HL3BBXY_ATGTCA_S38_L005_R1_001.unaln.bam 185470771 BAM NA 61dfad13-1ec5-433e-8599-9023ad1c02b4 katmai C3L-03126.miRNA-Seq.T.hg38 C3L-03126 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b189cdf0-8c2c-4b24-b939-40c47334d23a/1b9d03e5-035b-4d95-ac1d-5407d17fe37e_mirnaseq_gdc_realn.bam 212713772 BAM hg38 b189cdf0-8c2c-4b24-b939-40c47334d23a katmai -C3L-03126.RNA-Seq.genomic.T.hg38 C3L-03126 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bd847e02-6b22-4564-afe6-7ab4f4a2bc0a/765b502f-4747-453b-8af4-d4ad64899e6b.rna_seq.genomic.gdc_realn.bam 7775653110 BAM hg38 bd847e02-6b22-4564-afe6-7ab4f4a2bc0a katmai C3L-03129.MethArray.Green.T C3L-03129 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/544307df-a85a-4a5d-9b5a-11bed40bbe98/203561620153_R07C01_Grn.idat 13676211 IDAT NA 544307df-a85a-4a5d-9b5a-11bed40bbe98 katmai C3L-03129.MethArray.Red.T C3L-03129 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/83d7f940-8978-4631-aa7a-12dd269f881a/203561620153_R07C01_Red.idat 13676211 IDAT NA 83d7f940-8978-4631-aa7a-12dd269f881a katmai C3L-03129.miRNA-Seq.T C3L-03129 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f194f8e7-2b19-40c6-8fb6-1e9c966c40c8/190813_UNC32-K00270_0196_AH5MCWBBXY_ACAGTG_S34_L002_R1_001.unaln.bam 144049335 BAM NA f194f8e7-2b19-40c6-8fb6-1e9c966c40c8 katmai C3L-03129.miRNA-Seq.T.hg38 C3L-03129 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3f4290c3-2354-452b-8bd6-f9e958e550b2/c933447f-3db9-4885-b12e-ec01655e92a2_mirnaseq_gdc_realn.bam 165270623 BAM hg38 3f4290c3-2354-452b-8bd6-f9e958e550b2 katmai -C3L-03129.RNA-Seq.genomic.T.hg38 C3L-03129 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/41810ebb-bcde-4884-a85c-ee9ba5cc7ba2/334d2ad5-40e4-4b8d-90eb-b4c37d7f70f2.rna_seq.genomic.gdc_realn.bam 6846881582 BAM hg38 41810ebb-bcde-4884-a85c-ee9ba5cc7ba2 katmai C3L-03143.MethArray.Green.T C3L-03143 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e47e19c7-3371-4894-81a9-1ab31a66e3eb/203273630261_R06C01_Grn.idat 13676231 IDAT NA e47e19c7-3371-4894-81a9-1ab31a66e3eb katmai C3L-03143.MethArray.Red.T C3L-03143 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7c03fb04-3bc5-4a13-b83d-34783acfeb90/203273630261_R06C01_Red.idat 13676231 IDAT NA 7c03fb04-3bc5-4a13-b83d-34783acfeb90 katmai C3L-03143.miRNA-Seq.T C3L-03143 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2c0733e4-8321-4784-8355-1dba5aa89050/190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L004_R1_001.unaln.bam 164396800 BAM NA 2c0733e4-8321-4784-8355-1dba5aa89050 katmai @@ -3445,19 +3309,16 @@ C3L-03350.MethArray.Green.T C3L-03350 PDA Methylation Array tumor /diskmnt/Proje C3L-03350.MethArray.Red.T C3L-03350 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/94a4729b-2548-408c-acfd-e21b6676634f/203561450030_R06C01_Red.idat 13676216 IDAT NA 94a4729b-2548-408c-acfd-e21b6676634f katmai C3L-03350.miRNA-Seq.T C3L-03350 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d9497292-ce88-4a2c-ba01-cb532316352c/190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L005_R1_001.unaln.bam 244660424 BAM NA d9497292-ce88-4a2c-ba01-cb532316352c katmai C3L-03350.miRNA-Seq.T.hg38 C3L-03350 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fad10a93-c712-44fa-8e7d-475ab01ee09d/fc78ccbd-64ea-448f-9389-7e4fe7ef4b6b_mirnaseq_gdc_realn.bam 281234811 BAM hg38 fad10a93-c712-44fa-8e7d-475ab01ee09d katmai -C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2e2d71d8-e5ef-458b-be15-58ab0efbaa8b/dc8a291f-e1da-453e-884e-bfb112058607.rna_seq.genomic.gdc_realn.bam 8277980120 BAM hg38 2e2d71d8-e5ef-458b-be15-58ab0efbaa8b katmai C3L-03356.MethArray.Green.T C3L-03356 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1d564805-865f-4612-8382-55adcbab274a/203561620012_R06C01_Grn.idat 13676211 IDAT NA 1d564805-865f-4612-8382-55adcbab274a katmai C3L-03356.MethArray.Red.T C3L-03356 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e3860c22-14b1-4407-92b3-379ed46c4420/203561620012_R06C01_Red.idat 13676211 IDAT NA e3860c22-14b1-4407-92b3-379ed46c4420 katmai C3L-03356.miRNA-Seq.T C3L-03356 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/217fe8a7-3227-4ac7-83c4-62c5f36f5b7d/190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L006_R1_001.unaln.bam 227806433 BAM NA 217fe8a7-3227-4ac7-83c4-62c5f36f5b7d katmai C3L-03356.miRNA-Seq.T.hg38 C3L-03356 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/755a44a2-1732-41f8-abd3-89159bf4a3c7/846740a0-48f8-4822-bcdc-2b62f28664d2_mirnaseq_gdc_realn.bam 258004433 BAM hg38 755a44a2-1732-41f8-abd3-89159bf4a3c7 katmai -C3L-03356.RNA-Seq.genomic.T.hg38 C3L-03356 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/82bca245-af17-4876-bdde-0cdbf2962495/d959dfaf-76be-4f42-9fe3-c19893e70eb6.rna_seq.genomic.gdc_realn.bam 9815506278 BAM hg38 82bca245-af17-4876-bdde-0cdbf2962495 katmai C3L-03371.MethArray.Green.A C3L-03371 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7a042bdb-d1bf-41ab-8fca-ed336cbb2974/203561620086_R08C01_Grn.idat 13676236 IDAT NA 7a042bdb-d1bf-41ab-8fca-ed336cbb2974 katmai C3L-03371.MethArray.Green.T C3L-03371 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e14cb9cd-570c-4145-ae3f-02f9f0981332/203561450018_R06C01_Grn.idat 13676216 IDAT NA e14cb9cd-570c-4145-ae3f-02f9f0981332 katmai C3L-03371.MethArray.Red.A C3L-03371 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4bb1a5d-7db1-4b58-96fa-6bc7ca72575a/203561620086_R08C01_Red.idat 13676236 IDAT NA e4bb1a5d-7db1-4b58-96fa-6bc7ca72575a katmai C3L-03371.MethArray.Red.T C3L-03371 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/23424878-3656-4d50-8361-b6f88e81942b/203561450018_R06C01_Red.idat 13676216 IDAT NA 23424878-3656-4d50-8361-b6f88e81942b katmai C3L-03371.miRNA-Seq.T C3L-03371 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0e11e966-7771-4ce3-8a9c-80bc3b19c239/190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L004_R1_001.unaln.bam 156803811 BAM NA 0e11e966-7771-4ce3-8a9c-80bc3b19c239 katmai C3L-03371.miRNA-Seq.T.hg38 C3L-03371 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef/dfd78d92-4529-431f-a8a4-7b0c090372ae_mirnaseq_gdc_realn.bam 179976957 BAM hg38 1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef katmai -C3L-03371.RNA-Seq.genomic.T.hg38 C3L-03371 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/79a695d8-da31-4943-b5b9-ba26ffb05ad3/5fb51f39-006d-4385-ac89-597f0e5655bb.rna_seq.genomic.gdc_realn.bam 10244148503 BAM hg38 79a695d8-da31-4943-b5b9-ba26ffb05ad3 katmai C3L-03372.MethArray.Green.T C3L-03372 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/e714040a-6402-4235-8292-63a0077c85c2/204367490151_R06C01_Grn.idat 13677895 IDAT NA e714040a-6402-4235-8292-63a0077c85c2 katmai C3L-03372.MethArray.Red.T C3L-03372 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/17e7d89a-fd06-4bbb-a052-1c0b3e40daa6/204367490151_R06C01_Red.idat 13677895 IDAT NA 17e7d89a-fd06-4bbb-a052-1c0b3e40daa6 katmai C3L-03372.miRNA-Seq.T.hg38 C3L-03372 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e97614e1-f3b1-4cdd-a1b0-a63d474ba783/dc89a039-334e-4161-bf3c-fb08ce3dd668_mirnaseq_gdc_realn.bam 282560822 BAM hg38 e97614e1-f3b1-4cdd-a1b0-a63d474ba783 katmai @@ -3485,7 +3346,6 @@ C3L-03388.MethArray.Red.A C3L-03388 PDA Methylation Array tissue_normal /diskmnt C3L-03388.MethArray.Red.T C3L-03388 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2cf2c340-11e0-4fea-be82-a8d3367717bc/203561620089_R07C01_Red.idat 13676236 IDAT NA 2cf2c340-11e0-4fea-be82-a8d3367717bc katmai C3L-03388.miRNA-Seq.T C3L-03388 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4ab26243-d9aa-4fa9-94ff-ce34e600ad97/190712_UNC32-K00270_0192_BH7HL3BBXY_ATCACG_S24_L005_R1_001.unaln.bam 220226995 BAM NA 4ab26243-d9aa-4fa9-94ff-ce34e600ad97 katmai C3L-03388.miRNA-Seq.T.hg38 C3L-03388 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/39bcaeff-53d9-4fc3-9665-8793556d8eb7/20793ec0-af80-483e-ba5d-57612a270391_mirnaseq_gdc_realn.bam 247721626 BAM hg38 39bcaeff-53d9-4fc3-9665-8793556d8eb7 katmai -C3L-03388.RNA-Seq.genomic.T.hg38 C3L-03388 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/296907e7-a60d-4668-b7ec-13a264939445/2abe9248-23a3-40e8-9d57-de266eaf6b65.rna_seq.genomic.gdc_realn.bam 7971957323 BAM hg38 296907e7-a60d-4668-b7ec-13a264939445 katmai C3L-03390.MethArray.Green.T C3L-03390 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/57c87550-a9e8-43e6-9554-90970b614812/203271750057_R05C01_Grn.idat 13676206 IDAT NA 57c87550-a9e8-43e6-9554-90970b614812 katmai C3L-03390.MethArray.Red.T C3L-03390 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cbb24d59-cd02-49f0-9ab9-a9fad7e5c51d/203271750057_R05C01_Red.idat 13676206 IDAT NA cbb24d59-cd02-49f0-9ab9-a9fad7e5c51d katmai C3L-03390.miRNA-Seq.T C3L-03390 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/62b6f96c-5452-4340-a645-417daf6afc50/190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L006_R1_001.unaln.bam 217915775 BAM NA 62b6f96c-5452-4340-a645-417daf6afc50 katmai @@ -3502,14 +3362,12 @@ C3L-03394.MethArray.Red.A C3L-03394 PDA Methylation Array tissue_normal /diskmnt C3L-03394.MethArray.Red.T C3L-03394 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6c3dc853-93ff-4a37-b870-fc0783473868/203561620080_R06C01_Red.idat 13676226 IDAT NA 6c3dc853-93ff-4a37-b870-fc0783473868 katmai C3L-03394.miRNA-Seq.T C3L-03394 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5bfe37d7-0d13-4e68-a74a-08a325650f4e/190813_UNC32-K00270_0196_AH5MCWBBXY_CGATGT_S31_L004_R1_001.unaln.bam 268911384 BAM NA 5bfe37d7-0d13-4e68-a74a-08a325650f4e katmai C3L-03394.miRNA-Seq.T.hg38 C3L-03394 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/973d2b64-00a5-4d2f-98ce-a95a963dd883/bf997f28-674d-4404-b053-0d3b71365543_mirnaseq_gdc_realn.bam 307368018 BAM hg38 973d2b64-00a5-4d2f-98ce-a95a963dd883 katmai -C3L-03394.RNA-Seq.genomic.T.hg38 C3L-03394 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/40e9b175-a77e-4fd3-92b6-4bbfc626b387/a8b1647b-678d-4205-a897-542e9499dbcc.rna_seq.genomic.gdc_realn.bam 11917773461 BAM hg38 40e9b175-a77e-4fd3-92b6-4bbfc626b387 katmai C3L-03395.MethArray.Green.A C3L-03395 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0b7b6bfa-75ef-4537-84cb-6498f515dfbc/203561620072_R07C01_Grn.idat 13676226 IDAT NA 0b7b6bfa-75ef-4537-84cb-6498f515dfbc katmai C3L-03395.MethArray.Green.T C3L-03395 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9f8bd393-e9a5-4520-aabc-df335320a66b/203561450099_R07C01_Grn.idat 13676216 IDAT NA 9f8bd393-e9a5-4520-aabc-df335320a66b katmai C3L-03395.MethArray.Red.A C3L-03395 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6379c743-5fb9-40d7-852f-fd6aaab39b19/203561620072_R07C01_Red.idat 13676226 IDAT NA 6379c743-5fb9-40d7-852f-fd6aaab39b19 katmai C3L-03395.MethArray.Red.T C3L-03395 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d1d0d0dd-47f4-4841-84dc-8389eef10126/203561450099_R07C01_Red.idat 13676216 IDAT NA d1d0d0dd-47f4-4841-84dc-8389eef10126 katmai C3L-03395.miRNA-Seq.T C3L-03395 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/398799d9-a192-47ae-8f92-39db8d9748fb/190813_UNC32-K00270_0196_AH5MCWBBXY_TACAGC_S26_L003_R1_001.unaln.bam 182692906 BAM NA 398799d9-a192-47ae-8f92-39db8d9748fb katmai C3L-03395.miRNA-Seq.T.hg38 C3L-03395 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/02f37894-31a7-4652-8308-c7adc26a68c7/16746a0b-86d7-4ea3-a1b6-ac0546c9817f_mirnaseq_gdc_realn.bam 206536175 BAM hg38 02f37894-31a7-4652-8308-c7adc26a68c7 katmai -C3L-03395.RNA-Seq.genomic.T.hg38 C3L-03395 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/40b3a281-1def-4109-b53f-956a7554cd28/b987ea61-0dcb-4186-8d57-aca326477e01.rna_seq.genomic.gdc_realn.bam 9599114576 BAM hg38 40b3a281-1def-4109-b53f-956a7554cd28 katmai C3L-03400.MethArray.Green.T C3L-03400 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/45e29e19-34bd-4a33-adb1-37b4963e6922/203281980258_R07C01_Grn.idat 13676206 IDAT NA 45e29e19-34bd-4a33-adb1-37b4963e6922 katmai C3L-03400.MethArray.Red.T C3L-03400 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/110a35b4-5729-4ff8-b5ae-177b037ced52/203281980258_R07C01_Red.idat 13676206 IDAT NA 110a35b4-5729-4ff8-b5ae-177b037ced52 katmai C3L-03400.miRNA-Seq.T C3L-03400 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7f056ee2-4f80-4905-b693-60656e0c003e/190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L006_R1_001.unaln.bam 250092665 BAM NA 7f056ee2-4f80-4905-b693-60656e0c003e katmai @@ -3608,28 +3466,23 @@ C3L-03628.MethArray.Green.T C3L-03628 PDA Methylation Array tumor /diskmnt/Proje C3L-03628.MethArray.Red.T C3L-03628 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/30c5bb4e-e134-4c59-b92d-bb48f7d89e5e/203561450100_R06C01_Red.idat 13676221 IDAT NA 30c5bb4e-e134-4c59-b92d-bb48f7d89e5e katmai C3L-03628.miRNA-Seq.T C3L-03628 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/52dde65c-4875-4d54-b53f-eed554f095ae/190712_UNC32-K00270_0192_BH7HL3BBXY_TTAGGC_S26_L005_R1_001.unaln.bam 216539200 BAM NA 52dde65c-4875-4d54-b53f-eed554f095ae katmai C3L-03628.miRNA-Seq.T.hg38 C3L-03628 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d43af213-0cf9-437d-95f1-db449cb1248f/dc360683-4dda-4c0a-b235-0f9eea5d1112_mirnaseq_gdc_realn.bam 245874286 BAM hg38 d43af213-0cf9-437d-95f1-db449cb1248f katmai -C3L-03628.RNA-Seq.genomic.T.hg38 C3L-03628 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/51b382bf-347e-4a62-a516-6bac4506c45b/a91d4baf-f3ef-4e2b-80fa-8999eacc0626.rna_seq.genomic.gdc_realn.bam 8038948010 BAM hg38 51b382bf-347e-4a62-a516-6bac4506c45b katmai C3L-03629.RNA-Seq.genomic.T.BIOTEXT_W6w65P4.hg38 C3L-03629 PDA RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/150d0515-cb89-40d5-81c4-e79360711375/390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.genomic.gdc_realn.bam 10332204498 BAM hg38 150d0515-cb89-40d5-81c4-e79360711375 katmai C3L-03630.MethArray.Green.T C3L-03630 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d268937b-f28f-4bfe-bab5-dc3fe674d81a/203561450008_R06C01_Grn.idat 13676221 IDAT NA d268937b-f28f-4bfe-bab5-dc3fe674d81a katmai C3L-03630.MethArray.Red.T C3L-03630 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/53dd3494-bb5c-45a2-b6d4-c5cf5938393c/203561450008_R06C01_Red.idat 13676221 IDAT NA 53dd3494-bb5c-45a2-b6d4-c5cf5938393c katmai C3L-03630.miRNA-Seq.T C3L-03630 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/87eb915e-ce48-4726-b06f-df2635e2cd8c/190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L005_R1_001.unaln.bam 201073157 BAM NA 87eb915e-ce48-4726-b06f-df2635e2cd8c katmai C3L-03630.miRNA-Seq.T.hg38 C3L-03630 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/01acce44-2d0b-40d2-b51b-dbfbee6a2411/8beb0d4d-1339-4e89-a6b4-bc35029379d2_mirnaseq_gdc_realn.bam 229419543 BAM hg38 01acce44-2d0b-40d2-b51b-dbfbee6a2411 katmai -C3L-03630.RNA-Seq.genomic.T.hg38 C3L-03630 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d44b24c8-8f15-4616-8d61-7e435e75f760/c9932157-976a-438f-a698-6d10cb5e7d41.rna_seq.genomic.gdc_realn.bam 8588378220 BAM hg38 d44b24c8-8f15-4616-8d61-7e435e75f760 katmai C3L-03632.MethArray.Green.T C3L-03632 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c279f908-efd6-4a7b-8b5c-ab9dd49e2579/203561620050_R06C01_Grn.idat 13676221 IDAT NA c279f908-efd6-4a7b-8b5c-ab9dd49e2579 katmai C3L-03632.MethArray.Red.T C3L-03632 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/079c333e-4755-440f-88b4-5cd483ed3ab3/203561620050_R06C01_Red.idat 13676221 IDAT NA 079c333e-4755-440f-88b4-5cd483ed3ab3 katmai C3L-03632.miRNA-Seq.T C3L-03632 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c541191d-9f26-4513-bc60-21e898ae750c/190828_UNC32-K00270_0200_BH7GVJBBXY_GTCCGC_S167_L007_R1_001.unaln.bam 210746466 BAM NA c541191d-9f26-4513-bc60-21e898ae750c katmai C3L-03632.miRNA-Seq.T.hg38 C3L-03632 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b6e98d86-45c6-48c0-ae10-02568713e6a9/34d10f3a-eb92-4533-b426-992e0f44d99a_mirnaseq_gdc_realn.bam 238164459 BAM hg38 b6e98d86-45c6-48c0-ae10-02568713e6a9 katmai -C3L-03632.RNA-Seq.genomic.T.hg38 C3L-03632 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/60c74408-b37c-4fd6-8517-c3ccce02b5cd/02597d40-4607-4032-ba3f-6fcad1fdf3ba.rna_seq.genomic.gdc_realn.bam 7435215562 BAM hg38 60c74408-b37c-4fd6-8517-c3ccce02b5cd katmai C3L-03635.MethArray.Green.T C3L-03635 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/058dd7b1-7bfd-40de-9fc4-6c8bacd66ef6/203561620162_R07C01_Grn.idat 13676226 IDAT NA 058dd7b1-7bfd-40de-9fc4-6c8bacd66ef6 katmai C3L-03635.MethArray.Red.T C3L-03635 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cf5ffca3-f18c-4e33-897c-876bba315f55/203561620162_R07C01_Red.idat 13676226 IDAT NA cf5ffca3-f18c-4e33-897c-876bba315f55 katmai C3L-03635.miRNA-Seq.T C3L-03635 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/357f25b0-bbc4-46e2-a22c-c58ded55fdf6/190712_UNC32-K00270_0192_BH7HL3BBXY_GTGAAA_S42_L005_R1_001.unaln.bam 287711876 BAM NA 357f25b0-bbc4-46e2-a22c-c58ded55fdf6 katmai C3L-03635.miRNA-Seq.T.hg38 C3L-03635 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4f460bd7-5278-4b57-b395-7658f31cd5db/fab92cad-1800-418a-b6dd-24fc289ddd0b_mirnaseq_gdc_realn.bam 326293982 BAM hg38 4f460bd7-5278-4b57-b395-7658f31cd5db katmai -C3L-03635.RNA-Seq.genomic.T.hg38 C3L-03635 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3679bfb5-536a-4170-be9d-668cab0ae743/0384eeed-29cd-4495-a6f7-a8db14b13030.rna_seq.genomic.gdc_realn.bam 8491744779 BAM hg38 3679bfb5-536a-4170-be9d-668cab0ae743 katmai C3L-03639.MethArray.Green.T C3L-03639 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d2f36363-586e-4b76-9722-3041dd07d137/203561620049_R07C01_Grn.idat 13676231 IDAT NA d2f36363-586e-4b76-9722-3041dd07d137 katmai C3L-03639.MethArray.Red.T C3L-03639 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/06fcc68e-9f75-495b-9d62-884403aa00fc/203561620049_R07C01_Red.idat 13676231 IDAT NA 06fcc68e-9f75-495b-9d62-884403aa00fc katmai C3L-03639.miRNA-Seq.T C3L-03639 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/325f7a6c-da2e-4463-a075-ad5d5673eb66/190828_UNC32-K00270_0200_BH7GVJBBXY_CTCAGA_S165_L008_R1_001.unaln.bam 242890877 BAM NA 325f7a6c-da2e-4463-a075-ad5d5673eb66 katmai C3L-03639.miRNA-Seq.T.hg38 C3L-03639 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5b255f8b-1770-4098-8f51-d0bcbabfa6e7/930b6301-6ef5-440a-ab17-2f9c77eedca5_mirnaseq_gdc_realn.bam 270090382 BAM hg38 5b255f8b-1770-4098-8f51-d0bcbabfa6e7 katmai -C3L-03639.RNA-Seq.genomic.T.hg38 C3L-03639 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e07e1a00-cc74-46da-a1b1-8e73a034a0dd/e9d57849-a506-422b-a500-c237d2e13665.rna_seq.genomic.gdc_realn.bam 10096643305 BAM hg38 e07e1a00-cc74-46da-a1b1-8e73a034a0dd katmai C3L-03642.MethArray.Green.A C3L-03642 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/533f9704-5d66-49a7-bfd9-52754a6796ab/203273630258_R03C01_Grn.idat 13676231 IDAT NA 533f9704-5d66-49a7-bfd9-52754a6796ab katmai C3L-03642.MethArray.Green.T C3L-03642 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f862c7b8-a38e-4646-9333-bf41ce752a56/203561620086_R05C01_Grn.idat 13676236 IDAT NA f862c7b8-a38e-4646-9333-bf41ce752a56 katmai C3L-03642.MethArray.Red.A C3L-03642 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7d108a49-2c59-435c-9f10-a65750793ea7/203273630258_R03C01_Red.idat 13676231 IDAT NA 7d108a49-2c59-435c-9f10-a65750793ea7 katmai @@ -3695,8 +3548,6 @@ C3L-03743.miRNA-Seq.A C3L-03743 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-03743.miRNA-Seq.A.hg38 C3L-03743 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/c7adb2cd-8259-41e4-a532-3050d915da27/21f4763c-7ada-4fe8-9c30-7a16b3aacbb1_mirnaseq_gdc_realn.bam 195968250 BAM hg38 c7adb2cd-8259-41e4-a532-3050d915da27 katmai C3L-03743.miRNA-Seq.T C3L-03743 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/93181071-a523-4122-8886-e8b4dc6a74a3/190712_UNC32-K00270_0192_BH7HL3BBXY_TCATTC_S21_L004_R1_001.unaln.bam 130956878 BAM NA 93181071-a523-4122-8886-e8b4dc6a74a3 katmai C3L-03743.miRNA-Seq.T.hg38 C3L-03743 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8eab6531-d6cc-419a-b7f9-874e9893783b/35c4f7f6-8592-4253-8f98-0e13191d86a5_mirnaseq_gdc_realn.bam 148592559 BAM hg38 8eab6531-d6cc-419a-b7f9-874e9893783b katmai -C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1da42751-ac08-44d3-be4a-079c3cad256d/2917532a-84e2-478f-8002-2cdc0933731a.rna_seq.genomic.gdc_realn.bam 7946127775 BAM hg38 1da42751-ac08-44d3-be4a-079c3cad256d katmai -C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9a76c9ea-2bc2-4934-93c5-317308f8fbf6/a6c74427-1eb0-4d26-ae53-0ba9a33e9734.rna_seq.genomic.gdc_realn.bam 8947757265 BAM hg38 9a76c9ea-2bc2-4934-93c5-317308f8fbf6 katmai C3L-03744.MethArray.Green.T C3L-03744 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7d85f977-59ab-4262-90c3-55d76f360b27/203219650221_R07C01_Grn.idat 13676216 IDAT NA 7d85f977-59ab-4262-90c3-55d76f360b27 katmai C3L-03744.MethArray.Red.T C3L-03744 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/77076017-0be4-4b89-8d08-c21e41596d5e/203219650221_R07C01_Red.idat 13676216 IDAT NA 77076017-0be4-4b89-8d08-c21e41596d5e katmai C3L-03744.miRNA-Seq.T C3L-03744 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b7de4c30-15fa-4077-a781-789517a2befe/190206_UNC31-K00269_0191_AH2WY5BBXY_GTGAAA_S30_L002_R1_001.unaln.bam 226411237 BAM NA b7de4c30-15fa-4077-a781-789517a2befe katmai @@ -3806,8 +3657,6 @@ C3L-04027.miRNA-Seq.A C3L-04027 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-04027.miRNA-Seq.A.hg38 C3L-04027 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/f40f46f7-5cae-4c49-b937-93b8070acc2a/f941fff3-eaeb-4ee8-8d62-3d16975a5a5e_mirnaseq_gdc_realn.bam 287089959 BAM hg38 f40f46f7-5cae-4c49-b937-93b8070acc2a katmai C3L-04027.miRNA-Seq.T C3L-04027 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1de0ed0c-a5f0-4d30-af89-44ad81e6a39c/190712_UNC32-K00270_0192_BH7HL3BBXY_TAGCTT_S33_L005_R1_001.unaln.bam 202327616 BAM NA 1de0ed0c-a5f0-4d30-af89-44ad81e6a39c katmai C3L-04027.miRNA-Seq.T.hg38 C3L-04027 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/38751ca1-10c7-406e-9a12-355dc163b2e1/8fa468ba-6f68-4a3b-8353-6ad7586e5bf0_mirnaseq_gdc_realn.bam 222875950 BAM hg38 38751ca1-10c7-406e-9a12-355dc163b2e1 katmai -C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a729717a-d57e-434d-a30b-abb1e9732b13/44a768a7-1cab-4b18-9307-9d1c136e234b.rna_seq.genomic.gdc_realn.bam 8410259578 BAM hg38 a729717a-d57e-434d-a30b-abb1e9732b13 katmai -C3L-04027.RNA-Seq.genomic.T.hg38 C3L-04027 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/60cd403c-52ad-4267-8c61-c9da8e34a778/c069450d-3add-4eec-a92e-4241409d1a50.rna_seq.genomic.gdc_realn.bam 8799430899 BAM hg38 60cd403c-52ad-4267-8c61-c9da8e34a778 katmai C3L-04031.MethArray.Green.A C3L-04031 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/808ccbaf-2e80-4761-9120-a04ebe13dbd0/203561620040_R04C01_Grn.idat 13676211 IDAT NA 808ccbaf-2e80-4761-9120-a04ebe13dbd0 katmai C3L-04031.MethArray.Green.T C3L-04031 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6a4a7cb4-5e17-429c-b086-6f7f31a25776/203561620077_R04C01_Grn.idat 13676221 IDAT NA 6a4a7cb4-5e17-429c-b086-6f7f31a25776 katmai C3L-04031.MethArray.Red.A C3L-04031 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a3e7711e-f5ad-4407-94a7-54eb8d26eb54/203561620040_R04C01_Red.idat 13676211 IDAT NA a3e7711e-f5ad-4407-94a7-54eb8d26eb54 katmai @@ -3849,8 +3698,6 @@ C3L-04072.miRNA-Seq.A C3L-04072 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-04072.miRNA-Seq.A.hg38 C3L-04072 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/d52840df-ec63-42e3-9d1e-129c22e2d72a/0697a12e-c985-4510-8bc2-7438e4252138_mirnaseq_gdc_realn.bam 188053294 BAM hg38 d52840df-ec63-42e3-9d1e-129c22e2d72a katmai C3L-04072.miRNA-Seq.T C3L-04072 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/459b14b3-c375-4a50-8f7f-43e6bf7a87f7/190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L004_R1_001.unaln.bam 242119996 BAM NA 459b14b3-c375-4a50-8f7f-43e6bf7a87f7 katmai C3L-04072.miRNA-Seq.T.hg38 C3L-04072 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d561aaca-5cd8-404a-892b-538beec472af/aac3a103-654d-4401-b99c-5ca7da7f909e_mirnaseq_gdc_realn.bam 268481879 BAM hg38 d561aaca-5cd8-404a-892b-538beec472af katmai -C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b19262e9-e49a-41bb-b23b-ecdcb74293a0/94fdc446-7e55-4021-9204-139677fecadb.rna_seq.genomic.gdc_realn.bam 10047178019 BAM hg38 b19262e9-e49a-41bb-b23b-ecdcb74293a0 katmai -C3L-04072.RNA-Seq.genomic.T.hg38 C3L-04072 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/703bed27-f995-4a9e-bcf5-39213337b456/87944582-d98e-4afd-a00f-4fd6ff8d5940.rna_seq.genomic.gdc_realn.bam 8484341677 BAM hg38 703bed27-f995-4a9e-bcf5-39213337b456 katmai C3L-04080.MethArray.Green.A C3L-04080 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/39dc82b2-b443-4cda-848c-3dc8cbbfab62/203561450020_R07C01_Grn.idat 13676221 IDAT NA 39dc82b2-b443-4cda-848c-3dc8cbbfab62 katmai C3L-04080.MethArray.Green.T C3L-04080 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ab96bb4a-8fa6-4514-ab1c-b9ed1b4337b8/203273630261_R07C01_Grn.idat 13676231 IDAT NA ab96bb4a-8fa6-4514-ab1c-b9ed1b4337b8 katmai C3L-04080.MethArray.Red.A C3L-04080 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2fca1053-94bd-489b-950b-e8c9fbfd9194/203561450020_R07C01_Red.idat 13676221 IDAT NA 2fca1053-94bd-489b-950b-e8c9fbfd9194 katmai @@ -3859,8 +3706,6 @@ C3L-04080.miRNA-Seq.A C3L-04080 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-04080.miRNA-Seq.A.hg38 C3L-04080 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/83943e09-8a6c-41d3-ac94-0e34972c0d4c/094aadcf-5abf-48d8-aad6-533cd9296b3d_mirnaseq_gdc_realn.bam 255143705 BAM hg38 83943e09-8a6c-41d3-ac94-0e34972c0d4c katmai C3L-04080.miRNA-Seq.T C3L-04080 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b298ddda-8e4d-4a76-922e-d803ce536e37/190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L004_R1_001.unaln.bam 189077676 BAM NA b298ddda-8e4d-4a76-922e-d803ce536e37 katmai C3L-04080.miRNA-Seq.T.hg38 C3L-04080 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/635e172d-18d9-473e-959a-577d893346b6/9ae4c3a9-e9eb-419f-a055-6538f207f462_mirnaseq_gdc_realn.bam 214863179 BAM hg38 635e172d-18d9-473e-959a-577d893346b6 katmai -C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bd453332-8552-45b6-aafa-d47cba09494a/442963e3-458a-42ee-9d73-0123cfe2d024.rna_seq.genomic.gdc_realn.bam 8702571591 BAM hg38 bd453332-8552-45b6-aafa-d47cba09494a katmai -C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1dd7c9c7-d4a6-411f-990a-151757a7e63e/b7db871b-6973-4d62-a905-91c2d7dd330d.rna_seq.genomic.gdc_realn.bam 8854255208 BAM hg38 1dd7c9c7-d4a6-411f-990a-151757a7e63e katmai C3L-04081.MethArray.Green.T C3L-04081 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/14cbae22-de8f-432f-a921-b32f66189665/205555390176_R07C01_Grn.idat 13677955 IDAT NA 14cbae22-de8f-432f-a921-b32f66189665 katmai C3L-04081.MethArray.Red.T C3L-04081 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/44ba9c0b-f969-4a64-93ad-bd193b5365e0/205555390176_R07C01_Red.idat 13677955 IDAT NA 44ba9c0b-f969-4a64-93ad-bd193b5365e0 katmai C3L-04081.miRNA-Seq.T C3L-04081 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ab3f233e-2bb2-484a-92b2-0852ad5a4bf2/210702_UNC32-K00270_0289_AHKJ22BBXY_TAATCG_S34_L005_R1_001.unaln.bam 326214186 BAM NA ab3f233e-2bb2-484a-92b2-0852ad5a4bf2 katmai @@ -3986,7 +3831,6 @@ C3L-04473.MethArray.Green.T C3L-04473 PDA Methylation Array tumor /diskmnt/Proje C3L-04473.MethArray.Red.T C3L-04473 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4c8a14b6-c02a-4eb7-b3d8-a841b28c35df/203561450073_R06C01_Red.idat 13676221 IDAT NA 4c8a14b6-c02a-4eb7-b3d8-a841b28c35df katmai C3L-04473.miRNA-Seq.T C3L-04473 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/049db0b3-c57d-4212-bf6e-958143c523d3/190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L005_R1_001.unaln.bam 188659787 BAM NA 049db0b3-c57d-4212-bf6e-958143c523d3 katmai C3L-04473.miRNA-Seq.T.hg38 C3L-04473 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/42804d2e-1761-4fa6-a0e2-8f66ee8d2625/971bafab-60f2-47d6-b67c-2ccbe8b85d9e_mirnaseq_gdc_realn.bam 214125282 BAM hg38 42804d2e-1761-4fa6-a0e2-8f66ee8d2625 katmai -C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d2d69a8c-7132-4daf-8895-7ceaaaafdbb9/fd2439d2-945b-4f58-911f-839ecc4ae8fb.rna_seq.genomic.gdc_realn.bam 7728076176 BAM hg38 d2d69a8c-7132-4daf-8895-7ceaaaafdbb9 katmai C3L-04475.MethArray.Green.A C3L-04475 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/099fb4cb-e30f-468a-ab0e-ef240f9e0be7/203561450008_R07C01_Grn.idat 13676221 IDAT NA 099fb4cb-e30f-468a-ab0e-ef240f9e0be7 katmai C3L-04475.MethArray.Green.T C3L-04475 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dce8220b-1674-491b-8817-dbc59aaf42f1/203561620072_R06C01_Grn.idat 13676226 IDAT NA dce8220b-1674-491b-8817-dbc59aaf42f1 katmai C3L-04475.MethArray.Red.A C3L-04475 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/39b45b51-6e8f-4fa6-8da8-39d06104678a/203561450008_R07C01_Red.idat 13676221 IDAT NA 39b45b51-6e8f-4fa6-8da8-39d06104678a katmai @@ -3995,15 +3839,12 @@ C3L-04475.miRNA-Seq.A C3L-04475 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3L-04475.miRNA-Seq.A.hg38 C3L-04475 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/7bc262a2-033f-4198-9086-ad454ee34b34/c0c0a07e-f00f-426f-a250-7d13537f358f_mirnaseq_gdc_realn.bam 215481389 BAM hg38 7bc262a2-033f-4198-9086-ad454ee34b34 katmai C3L-04475.miRNA-Seq.T C3L-04475 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c11207da-f434-44b6-9e42-c197e37e13b5/190712_UNC32-K00270_0192_BH7HL3BBXY_GTTTCG_S44_L005_R1_001.unaln.bam 212888643 BAM NA c11207da-f434-44b6-9e42-c197e37e13b5 katmai C3L-04475.miRNA-Seq.T.hg38 C3L-04475 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7781ac53-e536-457e-9955-6d428ee7c487/6a3a5e69-3b24-439e-9603-c0e24c7736ea_mirnaseq_gdc_realn.bam 248005318 BAM hg38 7781ac53-e536-457e-9955-6d428ee7c487 katmai -C3L-04475.RNA-Seq.genomic.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1f4c1fdd-794d-4a45-a3bf-732a541aeb4d/f7f67ce1-3de9-41b6-991b-04ef5fc48a86.rna_seq.genomic.gdc_realn.bam 8392367227 BAM hg38 1f4c1fdd-794d-4a45-a3bf-732a541aeb4d katmai -C3L-04475.RNA-Seq.genomic.T.hg38 C3L-04475 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d3719da0-010c-433b-b0b2-17d023aff099/355b949b-302e-431b-86b8-cae32df1c072.rna_seq.genomic.gdc_realn.bam 7745446698 BAM hg38 d3719da0-010c-433b-b0b2-17d023aff099 katmai C3L-04479.MethArray.Green.A C3L-04479 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2072157f-6806-4dab-a4b3-3e9e92c6c873/203561620050_R07C01_Grn.idat 13676221 IDAT NA 2072157f-6806-4dab-a4b3-3e9e92c6c873 katmai C3L-04479.MethArray.Green.T C3L-04479 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a9e93344-6886-426d-8d56-6d1dab5564b7/203561450023_R07C01_Grn.idat 13676221 IDAT NA a9e93344-6886-426d-8d56-6d1dab5564b7 katmai C3L-04479.MethArray.Red.A C3L-04479 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1f4656e1-0c0d-47ed-8266-6a0f5e464e8f/203561620050_R07C01_Red.idat 13676221 IDAT NA 1f4656e1-0c0d-47ed-8266-6a0f5e464e8f katmai C3L-04479.MethArray.Red.T C3L-04479 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c4626521-377c-4c28-8c95-64ccfd036617/203561450023_R07C01_Red.idat 13676221 IDAT NA c4626521-377c-4c28-8c95-64ccfd036617 katmai C3L-04479.miRNA-Seq.T C3L-04479 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/23b3d8b0-eeb9-4e2a-ace1-02e8c5090ce0/190712_UNC32-K00270_0192_BH7HL3BBXY_CGTACG_S45_L005_R1_001.unaln.bam 196693533 BAM NA 23b3d8b0-eeb9-4e2a-ace1-02e8c5090ce0 katmai C3L-04479.miRNA-Seq.T.hg38 C3L-04479 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4e03b311-b192-4013-b80f-e720d1233358/e93be60f-e553-4512-9f25-63d1439d21d0_mirnaseq_gdc_realn.bam 221334831 BAM hg38 4e03b311-b192-4013-b80f-e720d1233358 katmai -C3L-04479.RNA-Seq.genomic.T.hg38 C3L-04479 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5cc684f1-8730-449e-a775-fea85c86d852/f8bac4e8-c01f-4db4-bab2-e69bac7873b3.rna_seq.genomic.gdc_realn.bam 7687950942 BAM hg38 5cc684f1-8730-449e-a775-fea85c86d852 katmai C3L-04483.MethArray.Green.Tbm C3L-04483 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/560f2532-b83f-479d-bf16-16196872adb8/205589740002_R07C01_Grn.idat 13677955 IDAT NA 560f2532-b83f-479d-bf16-16196872adb8 katmai C3L-04483.MethArray.Red.Tbm C3L-04483 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/a38647e1-3d07-4378-895b-510d07968910/205589740002_R07C01_Red.idat 13677955 IDAT NA a38647e1-3d07-4378-895b-510d07968910 katmai C3L-04483.RNA-Seq.R1.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/1ece23d9-50e4-4840-9368-54b95b44af41/210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 3883362168 FASTQ NA 1ece23d9-50e4-4840-9368-54b95b44af41 katmai @@ -4020,7 +3861,6 @@ C3L-04495.MethArray.Red.A C3L-04495 PDA Methylation Array tissue_normal /diskmnt C3L-04495.MethArray.Red.T C3L-04495 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/933ae9a6-8ef9-49b0-84d8-0259535aec20/203561620040_R07C01_Red.idat 13676211 IDAT NA 933ae9a6-8ef9-49b0-84d8-0259535aec20 katmai C3L-04495.miRNA-Seq.T C3L-04495 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1583ad51-813e-47f1-9fbd-ec4f32f02829/190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L006_R1_001.unaln.bam 216522026 BAM NA 1583ad51-813e-47f1-9fbd-ec4f32f02829 katmai C3L-04495.miRNA-Seq.T.hg38 C3L-04495 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/39357f78-abb8-4e0c-8dcd-9670eed43fc3/033d8cf1-959b-47d5-a607-129079a8c173_mirnaseq_gdc_realn.bam 246360639 BAM hg38 39357f78-abb8-4e0c-8dcd-9670eed43fc3 katmai -C3L-04495.RNA-Seq.genomic.T.hg38 C3L-04495 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0004f9f1-8b1b-4a8d-9814-f43d50895d94/0e947ea6-f7ec-4bb9-a383-d8324cb2db75.rna_seq.genomic.gdc_realn.bam 8341216052 BAM hg38 0004f9f1-8b1b-4a8d-9814-f43d50895d94 katmai C3L-04505.MethArray.Green.Tbm C3L-04505 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4a519a86-b13b-4767-a21c-584ddf88f6de/203561450068_R03C01_Grn.idat 13676211 IDAT NA 4a519a86-b13b-4767-a21c-584ddf88f6de katmai C3L-04505.MethArray.Red.Tbm C3L-04505 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/726f778d-267d-4778-81f5-ce8157a2e3bd/203561450068_R03C01_Red.idat 13676211 IDAT NA 726f778d-267d-4778-81f5-ce8157a2e3bd katmai C3L-04505.miRNA-Seq.Tbm C3L-04505 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fe8147c1-656c-4755-b707-ba73be4934a4/190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L002_R1_001.unaln.bam 208980673 BAM NA fe8147c1-656c-4755-b707-ba73be4934a4 katmai @@ -4121,7 +3961,6 @@ C3L-04848.MethArray.Green.T C3L-04848 PDA Methylation Array tumor /diskmnt/Proje C3L-04848.MethArray.Red.T C3L-04848 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c949fa1f-723b-410f-bef5-469dffaa187e/203561620091_R07C01_Red.idat 13676211 IDAT NA c949fa1f-723b-410f-bef5-469dffaa187e katmai C3L-04848.miRNA-Seq.T C3L-04848 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/43902004-3c77-4930-b075-0b6ba0c2819e/190813_UNC32-K00270_0196_AH5MCWBBXY_TTAGGC_S32_L004_R1_001.unaln.bam 274553753 BAM NA 43902004-3c77-4930-b075-0b6ba0c2819e katmai C3L-04848.miRNA-Seq.T.hg38 C3L-04848 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/aa24d00b-2681-4765-9aee-2efb715b162e/9c67645b-7aa7-4ac9-a27e-de76bd6efc1f_mirnaseq_gdc_realn.bam 309366108 BAM hg38 aa24d00b-2681-4765-9aee-2efb715b162e katmai -C3L-04848.RNA-Seq.genomic.T.hg38 C3L-04848 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8b079630-5543-4d83-8679-5493aed29f31/4ef9bdbd-80aa-4724-90c4-cdd0d5b19951.rna_seq.genomic.gdc_realn.bam 14026277198 BAM hg38 8b079630-5543-4d83-8679-5493aed29f31 katmai C3L-04849.MethArray.Green.T C3L-04849 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/adbe175d-cf8b-4210-8dea-b61473eee470/203271740111_R05C01_Grn.idat 13676206 IDAT NA adbe175d-cf8b-4210-8dea-b61473eee470 katmai C3L-04849.MethArray.Red.T C3L-04849 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/eeb0a369-a062-426d-ba5d-267da4b88ae8/203271740111_R05C01_Red.idat 13676206 IDAT NA eeb0a369-a062-426d-ba5d-267da4b88ae8 katmai C3L-04849.miRNA-Seq.T C3L-04849 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6fb44401-917f-4026-871f-085b5b86fd79/190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L007_R1_001.unaln.bam 166507573 BAM NA 6fb44401-917f-4026-871f-085b5b86fd79 katmai @@ -4130,7 +3969,6 @@ C3L-04853.MethArray.Green.T C3L-04853 PDA Methylation Array tumor /diskmnt/Proje C3L-04853.MethArray.Red.T C3L-04853 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aec562be-400c-4604-b456-1302bee009c4/203561620040_R08C01_Red.idat 13676211 IDAT NA aec562be-400c-4604-b456-1302bee009c4 katmai C3L-04853.miRNA-Seq.T C3L-04853 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c03edc80-eb0e-417f-9c74-af4c2eb4e647/190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L003_R1_001.unaln.bam 268137016 BAM NA c03edc80-eb0e-417f-9c74-af4c2eb4e647 katmai C3L-04853.miRNA-Seq.T.hg38 C3L-04853 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6276085d-68b3-4cb0-b4d4-e79967a5934d/46eab201-0f73-4464-9739-5620e92e5e05_mirnaseq_gdc_realn.bam 301461258 BAM hg38 6276085d-68b3-4cb0-b4d4-e79967a5934d katmai -C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f000225d-5838-4974-a814-06f07b9733e1/9486a946-d6e0-42d9-961e-a1c14d606a4e.rna_seq.genomic.gdc_realn.bam 8944027681 BAM hg38 f000225d-5838-4974-a814-06f07b9733e1 katmai C3L-04971.RNA-Seq.R1.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/d99c1f34-fb81-4eb9-a7cd-6633b8503c48/211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 4148351491 FASTQ NA d99c1f34-fb81-4eb9-a7cd-6633b8503c48 katmai C3L-04971.RNA-Seq.R2.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/b75f533d-4b00-472f-840b-75cd60a4db83/211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 4540860364 FASTQ NA b75f533d-4b00-472f-840b-75cd60a4db83 katmai C3L-04976.RNA-Seq.R1.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2/211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R1_001.fastq.gz 3833175431 FASTQ NA b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2 katmai @@ -4658,10 +4496,6 @@ C3N-00198.MethArray.Green.T.DEEP_oQ5wQY C3N-00198 PDA Methylation Array tumor /d C3N-00198.MethArray.Red.T.DEEP_oQ5wQY C3N-00198 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f291da5d-56c4-4215-a72a-fa85d1315263/202184990066_R06C01_Red.idat 13676216 IDAT NA f291da5d-56c4-4215-a72a-fa85d1315263 katmai C3N-00198.miRNA-Seq.T C3N-00198 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fbe5b2e3-d209-4141-aa37-5475d8221eb1/181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L003_R1_001.unaln.bam 280177556 BAM NA fbe5b2e3-d209-4141-aa37-5475d8221eb1 katmai C3N-00198.miRNA-Seq.T.hg38 C3N-00198 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/84845c5b-6901-488a-a67f-1d260a6506ca/5b4078bd-967e-4815-a12b-63c52731ac79_mirnaseq_gdc_realn.bam 306024194 BAM hg38 84845c5b-6901-488a-a67f-1d260a6506ca katmai -C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cda1a8b4-e862-4116-9835-28fe03d22f45/3cd2b803-ca88-4d1d-92fe-92f8ce26529e.rna_seq.genomic.gdc_realn.bam 10758984097 BAM hg38 cda1a8b4-e862-4116-9835-28fe03d22f45 katmai -C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cda1a8b4-e862-4116-9835-28fe03d22f45/3cd2b803-ca88-4d1d-92fe-92f8ce26529e.rna_seq.genomic.gdc_realn.bam 10758984097 BAM hg38 cda1a8b4-e862-4116-9835-28fe03d22f45 katmai -C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a0e243fb-b269-4354-aedb-f809413ac6c1/2d0f5744-b6b4-4211-a436-24a778a9febe.rna_seq.genomic.gdc_realn.bam 8921865420 BAM hg38 a0e243fb-b269-4354-aedb-f809413ac6c1 katmai -C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a0e243fb-b269-4354-aedb-f809413ac6c1/2d0f5744-b6b4-4211-a436-24a778a9febe.rna_seq.genomic.gdc_realn.bam 8921865420 BAM hg38 a0e243fb-b269-4354-aedb-f809413ac6c1 katmai C3N-00199.MethArray.Green.A C3N-00199 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1b6aea35-4b7b-4b20-9e5c-6c9209e27564/203027390081_R03C01_Grn.idat 13676226 IDAT NA 1b6aea35-4b7b-4b20-9e5c-6c9209e27564 katmai C3N-00199.MethArray.Green.T C3N-00199 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f602b1d1-7193-4817-b1ec-709eab5ab140/202184900105_R06C01_Grn.idat 13676221 IDAT NA f602b1d1-7193-4817-b1ec-709eab5ab140 katmai C3N-00199.MethArray.Red.A C3N-00199 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/59edd2ae-d26c-43d4-93a9-97981aee7fe7/203027390081_R03C01_Red.idat 13676226 IDAT NA 59edd2ae-d26c-43d4-93a9-97981aee7fe7 katmai @@ -4756,8 +4590,6 @@ C3N-00249.MethArray.Red.A C3N-00249 PDA Methylation Array tissue_normal /diskmnt C3N-00249.MethArray.Red.T.DEEP_rmjXr6 C3N-00249 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ea453dcc-542b-46f0-a943-d6673ebcd047/202176300001_R03C01_Red.idat 13676216 IDAT NA ea453dcc-542b-46f0-a943-d6673ebcd047 katmai C3N-00249.miRNA-Seq.T C3N-00249 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ef93cf21-8cc6-41ad-a7d6-ecc4466c3c3f/180924_UNC31-K00269_0154_AHWTMLBBXX_GTCCGC_S13_L001_R1_001.unaln.bam 235376558 BAM NA ef93cf21-8cc6-41ad-a7d6-ecc4466c3c3f katmai C3N-00249.miRNA-Seq.T.hg38 C3N-00249 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c97c42bc-a767-4336-8cf3-466491f10cbb/c39fb7e7-f6f6-4d87-a064-e8aedde885cb_mirnaseq_gdc_realn.bam 257255576 BAM hg38 c97c42bc-a767-4336-8cf3-466491f10cbb katmai -C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d9f735ab-743e-4cdd-8c04-8fea0056e4a0/c0d29ef9-858d-4b65-a27d-d64f5f8a3ba9.rna_seq.genomic.gdc_realn.bam 8810349366 BAM hg38 d9f735ab-743e-4cdd-8c04-8fea0056e4a0 katmai -C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d9f735ab-743e-4cdd-8c04-8fea0056e4a0/c0d29ef9-858d-4b65-a27d-d64f5f8a3ba9.rna_seq.genomic.gdc_realn.bam 8810349366 BAM hg38 d9f735ab-743e-4cdd-8c04-8fea0056e4a0 katmai C3N-00293.MethArray.Green.A C3N-00293 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4dae9a4-8fa6-487d-8d72-cec1fe0f3658/203028200104_R01C01_Grn.idat 13676235 IDAT NA e4dae9a4-8fa6-487d-8d72-cec1fe0f3658 katmai C3N-00293.MethArray.Green.T C3N-00293 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e22b6d78-1420-4bba-8a29-1a84db3bf1b5/202176290105_R01C01_Grn.idat 13676216 IDAT NA e22b6d78-1420-4bba-8a29-1a84db3bf1b5 katmai C3N-00293.MethArray.Red.A C3N-00293 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/afb5238e-f6a7-4671-bea0-9ef07080de1a/203028200104_R01C01_Red.idat 13676235 IDAT NA afb5238e-f6a7-4671-bea0-9ef07080de1a katmai @@ -4790,12 +4622,8 @@ C3N-00302.MethArray.Green.T.DEEP_xGLgAP C3N-00302 PDA Methylation Array tumor /d C3N-00302.MethArray.Red.T.DEEP_xGLgAP C3N-00302 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2d13c5a4-f1de-48a0-abec-d3f45f9649dd/202184900148_R06C01_Red.idat 13676246 IDAT NA 2d13c5a4-f1de-48a0-abec-d3f45f9649dd katmai C3N-00302.miRNA-Seq.T C3N-00302 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0196b828-604c-4241-b9ed-bf98ced75253/181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 260612851 BAM NA 0196b828-604c-4241-b9ed-bf98ced75253 katmai C3N-00302.miRNA-Seq.T.hg38 C3N-00302 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b58c9eb1-8660-4be2-b0b0-47e0013637d1/fa0d00a2-2539-45d5-af97-36f333c01e07_mirnaseq_gdc_realn.bam 280982993 BAM hg38 b58c9eb1-8660-4be2-b0b0-47e0013637d1 katmai -C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b4de6316-529f-4f07-968c-3fa636bc169b/f8ff4011-c015-46af-8cf2-f12393168a35.rna_seq.genomic.gdc_realn.bam 8055683077 BAM hg38 b4de6316-529f-4f07-968c-3fa636bc169b katmai -C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b4de6316-529f-4f07-968c-3fa636bc169b/f8ff4011-c015-46af-8cf2-f12393168a35.rna_seq.genomic.gdc_realn.bam 8055683077 BAM hg38 b4de6316-529f-4f07-968c-3fa636bc169b katmai C3N-00303.miRNA-Seq.T C3N-00303 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a203ea68-a10d-4697-a3bf-28c6dc0104f1/181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L003_R1_001.unaln.bam 308862040 BAM NA a203ea68-a10d-4697-a3bf-28c6dc0104f1 katmai C3N-00303.miRNA-Seq.T.hg38 C3N-00303 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/aa279b7c-6835-4b1b-a08d-86459787669e/bc6eb149-903a-48b2-9b11-530c652c96e7_mirnaseq_gdc_realn.bam 331174161 BAM hg38 aa279b7c-6835-4b1b-a08d-86459787669e katmai -C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/093a9013-b4fb-4ef2-b582-c63bf2163b38/3d9e8585-cba7-4ddb-9fbd-4a39d7c75f78.rna_seq.genomic.gdc_realn.bam 9474343083 BAM hg38 093a9013-b4fb-4ef2-b582-c63bf2163b38 katmai -C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/093a9013-b4fb-4ef2-b582-c63bf2163b38/3d9e8585-cba7-4ddb-9fbd-4a39d7c75f78.rna_seq.genomic.gdc_realn.bam 9474343083 BAM hg38 093a9013-b4fb-4ef2-b582-c63bf2163b38 katmai C3N-00305.MethArray.Green.T C3N-00305 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a335d658-b90f-4647-b6b1-f62df531d227/202178770045_R03C01_Grn.idat 13676241 IDAT NA a335d658-b90f-4647-b6b1-f62df531d227 katmai C3N-00305.MethArray.Red.T C3N-00305 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ddacac18-50ed-4008-99a2-5acd8503a283/202178770045_R03C01_Red.idat 13676241 IDAT NA ddacac18-50ed-4008-99a2-5acd8503a283 katmai C3N-00305.miRNA-Seq.T C3N-00305 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e1261a9a-4b0b-4f7b-a18f-5a180145e190/181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L004_R1_001.unaln.bam 261116012 BAM NA e1261a9a-4b0b-4f7b-a18f-5a180145e190 katmai @@ -5027,10 +4855,6 @@ C3N-00436.miRNA-Seq.A C3N-00436 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00436.miRNA-Seq.A.hg38 C3N-00436 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/0a998255-c134-46c5-abdc-e71f70bf6ac4/bd34ac2d-c96a-4e80-9ace-a25e8f90698e_mirnaseq_gdc_realn.bam 228374870 BAM hg38 0a998255-c134-46c5-abdc-e71f70bf6ac4 katmai C3N-00436.miRNA-Seq.T C3N-00436 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0d3a1cb7-f07e-49ad-84ee-2322dbbb9093/181012_UNC32-K00270_0124_AH223CBBXY_GTGAAA_S47_L007_R1_001.unaln.bam 249432286 BAM NA 0d3a1cb7-f07e-49ad-84ee-2322dbbb9093 katmai C3N-00436.miRNA-Seq.T.hg38 C3N-00436 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/97194916-1b82-4264-b617-be4dc306ec6b/de92920b-8193-431a-b759-5f90ae010084_mirnaseq_gdc_realn.bam 276042541 BAM hg38 97194916-1b82-4264-b617-be4dc306ec6b katmai -C3N-00436.RNA-Seq.genomic.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6869e692-131c-4b13-a354-db0175a87e77/ba3410dd-215a-4969-a0c5-529a809d598b.rna_seq.genomic.gdc_realn.bam 8449573905 BAM hg38 6869e692-131c-4b13-a354-db0175a87e77 katmai -C3N-00436.RNA-Seq.genomic.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6869e692-131c-4b13-a354-db0175a87e77/ba3410dd-215a-4969-a0c5-529a809d598b.rna_seq.genomic.gdc_realn.bam 8449573905 BAM hg38 6869e692-131c-4b13-a354-db0175a87e77 katmai -C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/34f6dcbf-12ee-45a6-b9fe-22e784916d10/ad4ccaed-9382-47a6-8d5b-cab8001bcac2.rna_seq.genomic.gdc_realn.bam 9118647850 BAM hg38 34f6dcbf-12ee-45a6-b9fe-22e784916d10 katmai -C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/34f6dcbf-12ee-45a6-b9fe-22e784916d10/ad4ccaed-9382-47a6-8d5b-cab8001bcac2.rna_seq.genomic.gdc_realn.bam 9118647850 BAM hg38 34f6dcbf-12ee-45a6-b9fe-22e784916d10 katmai C3N-00437.MethArray.Green.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5a97070-fb0b-40a8-a0de-39e8a3c8d34f/202184900110_R01C01_Grn.idat 13676256 IDAT NA f5a97070-fb0b-40a8-a0de-39e8a3c8d34f katmai C3N-00437.MethArray.Green.T.HET_oQJv7j C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d0c6f62-d319-4b8c-8008-4db5e7bdc13b/204367490029_R02C01_Grn.idat 13677885 IDAT NA 0d0c6f62-d319-4b8c-8008-4db5e7bdc13b katmai C3N-00437.MethArray.Green.T.HET_voJ7MV C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0de530fe-e661-4e4f-95b1-6016d13be49d/204367490056_R04C01_Grn.idat 13677895 IDAT NA 0de530fe-e661-4e4f-95b1-6016d13be49d katmai @@ -5121,30 +4945,20 @@ C3N-00511.MethArray.Green.T.DEEP_o03BmA C3N-00511 PDA Methylation Array tumor /d C3N-00511.MethArray.Red.T.DEEP_o03BmA C3N-00511 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fcd2a37b-7f2f-41be-b0b5-d0aebc47f033/202184900110_R05C01_Red.idat 13676256 IDAT NA fcd2a37b-7f2f-41be-b0b5-d0aebc47f033 katmai C3N-00511.miRNA-Seq.T C3N-00511 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4bec376-0b91-45a4-91a0-84922554953b/181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L007_R1_001.unaln.bam 217571620 BAM NA e4bec376-0b91-45a4-91a0-84922554953b katmai C3N-00511.miRNA-Seq.T.hg38 C3N-00511 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/29b35319-424f-4568-93aa-84d9384ff37f/88ca37fc-eb00-4de2-ac83-fc2c4a9149fd_mirnaseq_gdc_realn.bam 241752415 BAM hg38 29b35319-424f-4568-93aa-84d9384ff37f katmai -C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/58fe84ae-8f6a-442e-89d6-c59e3999e413/055f3a0f-d48e-409d-9e1d-90c26cc6bebc.rna_seq.genomic.gdc_realn.bam 8061985822 BAM hg38 58fe84ae-8f6a-442e-89d6-c59e3999e413 katmai -C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/58fe84ae-8f6a-442e-89d6-c59e3999e413/055f3a0f-d48e-409d-9e1d-90c26cc6bebc.rna_seq.genomic.gdc_realn.bam 8061985822 BAM hg38 58fe84ae-8f6a-442e-89d6-c59e3999e413 katmai C3N-00512.MethArray.Green.A C3N-00512 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3d2ebfac-8a81-4ac0-b045-64b9c45575d6/203561450048_R05C01_Grn.idat 13676221 IDAT NA 3d2ebfac-8a81-4ac0-b045-64b9c45575d6 katmai C3N-00512.MethArray.Red.A C3N-00512 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c3ab0448-78f6-47d0-88a5-d5431d63be51/203561450048_R05C01_Red.idat 13676221 IDAT NA c3ab0448-78f6-47d0-88a5-d5431d63be51 katmai C3N-00512.miRNA-Seq.T C3N-00512 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/76da2922-5dec-4e3d-97e0-35648713d4ac/181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L007_R1_001.unaln.bam 240414480 BAM NA 76da2922-5dec-4e3d-97e0-35648713d4ac katmai C3N-00512.miRNA-Seq.T.hg38 C3N-00512 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7f6f91ac-0060-48f8-a242-e0ea953334f6/6ead8a40-477d-49fe-88fa-233ce457e7bc_mirnaseq_gdc_realn.bam 270210259 BAM hg38 7f6f91ac-0060-48f8-a242-e0ea953334f6 katmai -C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5c2a119c-1ef2-4ea0-bd17-acbf1efd5299/4f9384d2-93a3-48db-8484-dcb29e7f1776.rna_seq.genomic.gdc_realn.bam 11127771633 BAM hg38 5c2a119c-1ef2-4ea0-bd17-acbf1efd5299 katmai -C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5c2a119c-1ef2-4ea0-bd17-acbf1efd5299/4f9384d2-93a3-48db-8484-dcb29e7f1776.rna_seq.genomic.gdc_realn.bam 11127771633 BAM hg38 5c2a119c-1ef2-4ea0-bd17-acbf1efd5299 katmai C3N-00513.MethArray.Green.A C3N-00513 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b04069ce-856f-4606-8616-3a92ce4e412c/203561450027_R08C01_Grn.idat 13676221 IDAT NA b04069ce-856f-4606-8616-3a92ce4e412c katmai C3N-00513.MethArray.Red.A C3N-00513 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c607d471-bb39-4852-8245-4407216d614e/203561450027_R08C01_Red.idat 13676221 IDAT NA c607d471-bb39-4852-8245-4407216d614e katmai C3N-00513.miRNA-Seq.T C3N-00513 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/98abf75c-c81c-4d9a-bb3b-7a345c5fb37a/181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L007_R1_001.unaln.bam 260368864 BAM NA 98abf75c-c81c-4d9a-bb3b-7a345c5fb37a katmai C3N-00513.miRNA-Seq.T.hg38 C3N-00513 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7c28263e-f4cc-4b08-8ed6-f95438427b37/743ea3ca-3314-48f3-ad3d-226e6ea5a6c9_mirnaseq_gdc_realn.bam 288697793 BAM hg38 7c28263e-f4cc-4b08-8ed6-f95438427b37 katmai -C3N-00513.RNA-Seq.genomic.T.hg38 C3N-00513 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/571160a2-3dc0-463b-abb7-019e75a85950/e66e5e0b-d168-432f-b7f6-372013e63614.rna_seq.genomic.gdc_realn.bam 7722934540 BAM hg38 571160a2-3dc0-463b-abb7-019e75a85950 katmai -C3N-00513.RNA-Seq.genomic.T.hg38 C3N-00513 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/571160a2-3dc0-463b-abb7-019e75a85950/e66e5e0b-d168-432f-b7f6-372013e63614.rna_seq.genomic.gdc_realn.bam 7722934540 BAM hg38 571160a2-3dc0-463b-abb7-019e75a85950 katmai C3N-00514.MethArray.Green.A C3N-00514 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4fec677d-03c3-4316-a131-ec9669702111/203561620085_R08C01_Grn.idat 13676226 IDAT NA 4fec677d-03c3-4316-a131-ec9669702111 katmai C3N-00514.MethArray.Red.A C3N-00514 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5dfbc9d7-d70b-4d63-88f3-545d89a5d562/203561620085_R08C01_Red.idat 13676226 IDAT NA 5dfbc9d7-d70b-4d63-88f3-545d89a5d562 katmai C3N-00514.miRNA-Seq.T C3N-00514 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/36f44b21-993f-4788-914d-55036b803f16/181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L007_R1_001.unaln.bam 245856655 BAM NA 36f44b21-993f-4788-914d-55036b803f16 katmai C3N-00514.miRNA-Seq.T.hg38 C3N-00514 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7ef851bb-45b5-4252-93e8-490b0d882c93/2de9af35-d95f-4b71-be2d-39a4472bb5e7_mirnaseq_gdc_realn.bam 270692019 BAM hg38 7ef851bb-45b5-4252-93e8-490b0d882c93 katmai -C3N-00514.RNA-Seq.genomic.T.hg38 C3N-00514 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bbd99f92-f36d-4b2e-8008-79cc5dde8d4d/5b5b7e9b-06ca-4364-bafd-64995c4fb40e.rna_seq.genomic.gdc_realn.bam 8486990879 BAM hg38 bbd99f92-f36d-4b2e-8008-79cc5dde8d4d katmai -C3N-00514.RNA-Seq.genomic.T.hg38 C3N-00514 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bbd99f92-f36d-4b2e-8008-79cc5dde8d4d/5b5b7e9b-06ca-4364-bafd-64995c4fb40e.rna_seq.genomic.gdc_realn.bam 8486990879 BAM hg38 bbd99f92-f36d-4b2e-8008-79cc5dde8d4d katmai C3N-00516.miRNA-Seq.T C3N-00516 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f53e9269-bd23-4eb1-9125-f0b9578d753d/181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L007_R1_001.unaln.bam 241523360 BAM NA f53e9269-bd23-4eb1-9125-f0b9578d753d katmai C3N-00516.miRNA-Seq.T.hg38 C3N-00516 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b1ffcf57-3bff-4bca-b875-6de377cafe1a/421d7885-90fc-447d-92f9-5c8278ab5a7d_mirnaseq_gdc_realn.bam 265110152 BAM hg38 b1ffcf57-3bff-4bca-b875-6de377cafe1a katmai -C3N-00516.RNA-Seq.genomic.T.hg38 C3N-00516 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6d391fcc-5cea-450b-89da-a1f4ed2e93db/4f7d5fc0-e06e-479a-866b-7faf42e06a4d.rna_seq.genomic.gdc_realn.bam 8832561300 BAM hg38 6d391fcc-5cea-450b-89da-a1f4ed2e93db katmai -C3N-00516.RNA-Seq.genomic.T.hg38 C3N-00516 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6d391fcc-5cea-450b-89da-a1f4ed2e93db/4f7d5fc0-e06e-479a-866b-7faf42e06a4d.rna_seq.genomic.gdc_realn.bam 8832561300 BAM hg38 6d391fcc-5cea-450b-89da-a1f4ed2e93db katmai C3N-00517.MethArray.Green.A C3N-00517 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f465b113-d977-45f2-8de7-2b2ad2e50f75/203561620043_R08C01_Grn.idat 13676211 IDAT NA f465b113-d977-45f2-8de7-2b2ad2e50f75 katmai C3N-00517.MethArray.Green.T C3N-00517 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f202313a-bbeb-49cc-8fcb-82313c3df5ea/202234360009_R05C01_Grn.idat 13676226 IDAT NA f202313a-bbeb-49cc-8fcb-82313c3df5ea katmai C3N-00517.MethArray.Red.A C3N-00517 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4070fd0c-d73e-4742-97d9-3b350738e75b/203561620043_R08C01_Red.idat 13676211 IDAT NA 4070fd0c-d73e-4742-97d9-3b350738e75b katmai @@ -5152,20 +4966,12 @@ C3N-00517.MethArray.Red.T C3N-00517 PDA Methylation Array tumor /diskmnt/Project C3N-00517.miRNA-Seq.A.hg38 C3N-00517 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/49b359f3-969a-4b87-871f-c58d73ccde82/978d28a0-2466-42ae-96b7-795b459030f2_mirnaseq_gdc_realn.bam 272411297 BAM hg38 49b359f3-969a-4b87-871f-c58d73ccde82 katmai C3N-00517.miRNA-Seq.T C3N-00517 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/402e58b6-cb7d-4bf1-b24a-fe71582d85d2/181113_UNC31-K00269_0164_AH23NNBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 192757219 BAM NA 402e58b6-cb7d-4bf1-b24a-fe71582d85d2 katmai C3N-00517.miRNA-Seq.T.hg38 C3N-00517 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6daedcd3-9ac8-42cb-9adf-fc53291419c0/b16295b7-fcd5-40e0-b34c-612cc7400014_mirnaseq_gdc_realn.bam 216051604 BAM hg38 6daedcd3-9ac8-42cb-9adf-fc53291419c0 katmai -C3N-00517.RNA-Seq.genomic.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a7aa622f-73bf-4d33-a340-5d34122406e4/47cb1ec8-2e37-4238-a50d-4d300441ab19.rna_seq.genomic.gdc_realn.bam 11945121871 BAM hg38 a7aa622f-73bf-4d33-a340-5d34122406e4 katmai -C3N-00517.RNA-Seq.genomic.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a7aa622f-73bf-4d33-a340-5d34122406e4/47cb1ec8-2e37-4238-a50d-4d300441ab19.rna_seq.genomic.gdc_realn.bam 11945121871 BAM hg38 a7aa622f-73bf-4d33-a340-5d34122406e4 katmai -C3N-00517.RNA-Seq.genomic.T.hg38 C3N-00517 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/536de3a6-d909-4ac1-9eec-0891a9b14c61/9b2c20dd-bfbd-44a1-8185-6e8c6e870bf3.rna_seq.genomic.gdc_realn.bam 9159849265 BAM hg38 536de3a6-d909-4ac1-9eec-0891a9b14c61 katmai -C3N-00517.RNA-Seq.genomic.T.hg38 C3N-00517 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/536de3a6-d909-4ac1-9eec-0891a9b14c61/9b2c20dd-bfbd-44a1-8185-6e8c6e870bf3.rna_seq.genomic.gdc_realn.bam 9159849265 BAM hg38 536de3a6-d909-4ac1-9eec-0891a9b14c61 katmai C3N-00518.MethArray.Green.A C3N-00518 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b5319b5a-bf49-49aa-958b-a46a09143b33/203561620089_R08C01_Grn.idat 13676236 IDAT NA b5319b5a-bf49-49aa-958b-a46a09143b33 katmai C3N-00518.MethArray.Red.A C3N-00518 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e6315c56-e1bc-4b9c-8177-aac92aaa80c7/203561620089_R08C01_Red.idat 13676236 IDAT NA e6315c56-e1bc-4b9c-8177-aac92aaa80c7 katmai C3N-00518.miRNA-Seq.A C3N-00518 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4a725658-5042-4215-a1e4-9d1b69817b8f/181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 304258636 BAM NA 4a725658-5042-4215-a1e4-9d1b69817b8f katmai C3N-00518.miRNA-Seq.A.hg38 C3N-00518 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/82c3f8f3-4c46-4f43-bf20-0239eb2b724a/5f424fd1-0570-4ee5-bd7a-fdd8530c1fa8_mirnaseq_gdc_realn.bam 335704654 BAM hg38 82c3f8f3-4c46-4f43-bf20-0239eb2b724a katmai C3N-00518.miRNA-Seq.T C3N-00518 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c321e0e3-d990-4f65-93df-f2d31536e571/181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L007_R1_001.unaln.bam 236317692 BAM NA c321e0e3-d990-4f65-93df-f2d31536e571 katmai C3N-00518.miRNA-Seq.T.hg38 C3N-00518 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e9c8747a-ea36-4cf6-a8a3-c1aa75cf4b40/e3075695-c9a6-45e8-a6dc-29e3b859e058_mirnaseq_gdc_realn.bam 259725187 BAM hg38 e9c8747a-ea36-4cf6-a8a3-c1aa75cf4b40 katmai -C3N-00518.RNA-Seq.genomic.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c0ab9e0b-159b-4930-b08e-2158feef52f6/90d41760-adc7-4726-809a-c57f3222cfb1.rna_seq.genomic.gdc_realn.bam 8443159004 BAM hg38 c0ab9e0b-159b-4930-b08e-2158feef52f6 katmai -C3N-00518.RNA-Seq.genomic.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c0ab9e0b-159b-4930-b08e-2158feef52f6/90d41760-adc7-4726-809a-c57f3222cfb1.rna_seq.genomic.gdc_realn.bam 8443159004 BAM hg38 c0ab9e0b-159b-4930-b08e-2158feef52f6 katmai -C3N-00518.RNA-Seq.genomic.T.hg38 C3N-00518 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/133ed448-8389-4c49-85ba-bfd7624d9ed1/7eec7346-8b89-42b2-ad1b-31ca67b42dc5.rna_seq.genomic.gdc_realn.bam 7287776606 BAM hg38 133ed448-8389-4c49-85ba-bfd7624d9ed1 katmai -C3N-00518.RNA-Seq.genomic.T.hg38 C3N-00518 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/133ed448-8389-4c49-85ba-bfd7624d9ed1/7eec7346-8b89-42b2-ad1b-31ca67b42dc5.rna_seq.genomic.gdc_realn.bam 7287776606 BAM hg38 133ed448-8389-4c49-85ba-bfd7624d9ed1 katmai C3N-00519.MethArray.Green.T C3N-00519 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a5e6b201-3b4b-44f8-a4e2-5e1aac5a1ee0/202184900140_R07C01_Grn.idat 13676262 IDAT NA a5e6b201-3b4b-44f8-a4e2-5e1aac5a1ee0 katmai C3N-00519.MethArray.Red.T C3N-00519 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c3f978f9-8c08-4b0f-82f8-e9323400604d/202184900140_R07C01_Red.idat 13676262 IDAT NA c3f978f9-8c08-4b0f-82f8-e9323400604d katmai C3N-00519.miRNA-Seq.A C3N-00519 HNSCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4586ee57-2e75-408b-85d9-8fc2066e2e21/181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L006_R1_001.unaln.bam 244554770 BAM NA 4586ee57-2e75-408b-85d9-8fc2066e2e21 katmai @@ -5428,7 +5234,6 @@ C3N-00709.MethArray.Green.T C3N-00709 PDA Methylation Array tumor /diskmnt/Proje C3N-00709.MethArray.Red.T C3N-00709 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c1309361-ff17-40df-9d2c-807dc4d1632d/203273630048_R01C01_Red.idat 13676232 IDAT NA c1309361-ff17-40df-9d2c-807dc4d1632d katmai C3N-00709.miRNA-Seq.T C3N-00709 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f6fa144b-bcb9-4962-8ae9-02531a7c3cbb/190712_UNC32-K00270_0192_BH7HL3BBXY_TGACCA_S27_L005_R1_001.unaln.bam 150926385 BAM NA f6fa144b-bcb9-4962-8ae9-02531a7c3cbb katmai C3N-00709.miRNA-Seq.T.hg38 C3N-00709 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/71edf6d8-e671-4c63-9edf-eda188e39b9c/cd9afa58-a602-44f1-8bf9-462a17f8f0fd_mirnaseq_gdc_realn.bam 167139008 BAM hg38 71edf6d8-e671-4c63-9edf-eda188e39b9c katmai -C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/88b83619-2e12-43a4-b078-9aa7dab5c404/8eb73313-d0eb-434a-a08b-3b8c9e4f8bde.rna_seq.genomic.gdc_realn.bam 8852010459 BAM hg38 88b83619-2e12-43a4-b078-9aa7dab5c404 katmai C3N-00715.MethArray.Green.T C3N-00715 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/436287eb-0e22-4ed1-abc8-65eeb727898e/203219670106_R08C01_Grn.idat 13676241 IDAT NA 436287eb-0e22-4ed1-abc8-65eeb727898e katmai C3N-00715.MethArray.Red.T C3N-00715 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d90c900c-8827-4451-80b8-9cb79c9d59ce/203219670106_R08C01_Red.idat 13676241 IDAT NA d90c900c-8827-4451-80b8-9cb79c9d59ce katmai C3N-00715.miRNA-Seq.A C3N-00715 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3783d254-c8b6-4145-87c1-48837dd69a62/190108_UNC31-K00269_0176_AHYGLVBBXX_ACTTGA_S8_L002_R1_001.unaln.bam 197244732 BAM NA 3783d254-c8b6-4145-87c1-48837dd69a62 katmai @@ -5662,18 +5467,12 @@ C3N-00954.miRNA-Seq.A C3N-00954 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00954.miRNA-Seq.A.hg38 C3N-00954 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/d30019a6-032b-4c60-bf16-c701505b424f/1f14966f-789b-4626-892d-0e322b528aba_mirnaseq_gdc_realn.bam 251184535 BAM hg38 d30019a6-032b-4c60-bf16-c701505b424f katmai C3N-00954.miRNA-Seq.T C3N-00954 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2ae8c6c2-a871-4ad3-b04a-e30e8a3ceb17/181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L001_R1_001.unaln.bam 251482663 BAM NA 2ae8c6c2-a871-4ad3-b04a-e30e8a3ceb17 katmai C3N-00954.miRNA-Seq.T.hg38 C3N-00954 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8c9a4a5a-5fbc-4d3c-bd4b-60e5bf7e58ea/dfe002b1-bc33-480a-944f-f93a1be777ee_mirnaseq_gdc_realn.bam 278405547 BAM hg38 8c9a4a5a-5fbc-4d3c-bd4b-60e5bf7e58ea katmai -C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b5d78263-72cb-4914-83d3-97d4c7e59469/dfac800b-7d07-49ab-9a3d-3854b0fb9bdb.rna_seq.genomic.gdc_realn.bam 12068357739 BAM hg38 b5d78263-72cb-4914-83d3-97d4c7e59469 katmai -C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b5d78263-72cb-4914-83d3-97d4c7e59469/dfac800b-7d07-49ab-9a3d-3854b0fb9bdb.rna_seq.genomic.gdc_realn.bam 12068357739 BAM hg38 b5d78263-72cb-4914-83d3-97d4c7e59469 katmai -C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8489cfdf-7e98-4abf-b1f5-19db81214663/df7d3657-77e3-4a99-bb69-3035bf1ccf61.rna_seq.genomic.gdc_realn.bam 7536680276 BAM hg38 8489cfdf-7e98-4abf-b1f5-19db81214663 katmai -C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8489cfdf-7e98-4abf-b1f5-19db81214663/df7d3657-77e3-4a99-bb69-3035bf1ccf61.rna_seq.genomic.gdc_realn.bam 7536680276 BAM hg38 8489cfdf-7e98-4abf-b1f5-19db81214663 katmai C3N-00957.MethArray.Green.A C3N-00957 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a77e3b38-37bd-4c62-8ea1-ceb5923dd152/203561620053_R08C01_Grn.idat 13676211 IDAT NA a77e3b38-37bd-4c62-8ea1-ceb5923dd152 katmai C3N-00957.MethArray.Green.T.DEEP_roKgy2 C3N-00957 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/84bcdede-25a8-450e-9067-29f65d95c4ee/202234360029_R03C01_Grn.idat 13676226 IDAT NA 84bcdede-25a8-450e-9067-29f65d95c4ee katmai C3N-00957.MethArray.Red.A C3N-00957 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5546d99a-5c9e-48c9-abc7-e94e2ce42e59/203561620053_R08C01_Red.idat 13676211 IDAT NA 5546d99a-5c9e-48c9-abc7-e94e2ce42e59 katmai C3N-00957.MethArray.Red.T.DEEP_roKgy2 C3N-00957 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e5a6177f-5cfc-43e5-8f97-31d95493bba0/202234360029_R03C01_Red.idat 13676226 IDAT NA e5a6177f-5cfc-43e5-8f97-31d95493bba0 katmai C3N-00957.miRNA-Seq.T C3N-00957 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/998c8a92-92c9-4656-9368-30f7752bdc7c/180724_UNC32-K00270_0106_BHWK3MBBXX_CAACTA_S5_L007_R1_001.unaln.bam 264781864 BAM NA 998c8a92-92c9-4656-9368-30f7752bdc7c katmai C3N-00957.miRNA-Seq.T.hg38 C3N-00957 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d83bf88a-b4f3-4e27-987c-ad38affb09ad/94568398-b852-4380-b8d2-5be89c73b351_mirnaseq_gdc_realn.bam 285819047 BAM hg38 d83bf88a-b4f3-4e27-987c-ad38affb09ad katmai -C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c141c73c-c1d4-46c5-a233-78213237d952/aac0b238-0c48-4a76-98fb-48af7cf0546d.rna_seq.genomic.gdc_realn.bam 9406169712 BAM hg38 c141c73c-c1d4-46c5-a233-78213237d952 katmai -C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c141c73c-c1d4-46c5-a233-78213237d952/aac0b238-0c48-4a76-98fb-48af7cf0546d.rna_seq.genomic.gdc_realn.bam 9406169712 BAM hg38 c141c73c-c1d4-46c5-a233-78213237d952 katmai C3N-00958.MethArray.Green.A C3N-00958 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/39a373e4-9a76-40f2-a151-b8b89784bf59/205549610123_R06C01_Grn.idat 13677955 IDAT NA 39a373e4-9a76-40f2-a151-b8b89784bf59 katmai C3N-00958.MethArray.Green.T C3N-00958 CCRCC Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/9e8f841c-3f4a-4c6c-84b5-f93f54a4dc2f/205549600088_R01C01_Grn.idat 13677955 IDAT NA 9e8f841c-3f4a-4c6c-84b5-f93f54a4dc2f katmai C3N-00958.MethArray.Red.A C3N-00958 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/765f9529-2b71-4e14-94b2-1e6912ef2128/205549610123_R06C01_Red.idat 13677955 IDAT NA 765f9529-2b71-4e14-94b2-1e6912ef2128 katmai @@ -5720,15 +5519,10 @@ C3N-01011.miRNA-Seq.A C3N-01011 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-01011.miRNA-Seq.A.hg38 C3N-01011 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/79dd313f-12b3-4b81-b6dd-b727522ace6c/36e2381a-dba9-4b24-bb5d-ddbec6e2ec74_mirnaseq_gdc_realn.bam 227916943 BAM hg38 79dd313f-12b3-4b81-b6dd-b727522ace6c katmai C3N-01011.miRNA-Seq.T C3N-01011 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/44614a05-4ddc-40b5-9c0a-0682ed73c910/181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 249392694 BAM NA 44614a05-4ddc-40b5-9c0a-0682ed73c910 katmai C3N-01011.miRNA-Seq.T.hg38 C3N-01011 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/770101a2-bad8-4a22-b5d1-ec0a37b3b6dc/bedc811b-a574-4ac6-9264-9900bf4fea4d_mirnaseq_gdc_realn.bam 275660657 BAM hg38 770101a2-bad8-4a22-b5d1-ec0a37b3b6dc katmai -C3N-01011.RNA-Seq.genomic.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0f0a4d78-285e-497b-a2e7-ab84cd1a7e06/90e93d89-8e99-4771-8591-9a04a8eee23f.rna_seq.genomic.gdc_realn.bam 9591896366 BAM hg38 0f0a4d78-285e-497b-a2e7-ab84cd1a7e06 katmai -C3N-01011.RNA-Seq.genomic.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0f0a4d78-285e-497b-a2e7-ab84cd1a7e06/90e93d89-8e99-4771-8591-9a04a8eee23f.rna_seq.genomic.gdc_realn.bam 9591896366 BAM hg38 0f0a4d78-285e-497b-a2e7-ab84cd1a7e06 katmai -C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a638e718-47eb-43cf-bb59-273366d0e978/edf153b0-3092-411c-b03a-090fe0630576.rna_seq.genomic.gdc_realn.bam 9304809212 BAM hg38 a638e718-47eb-43cf-bb59-273366d0e978 katmai -C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a638e718-47eb-43cf-bb59-273366d0e978/edf153b0-3092-411c-b03a-090fe0630576.rna_seq.genomic.gdc_realn.bam 9304809212 BAM hg38 a638e718-47eb-43cf-bb59-273366d0e978 katmai C3N-01012.MethArray.Green.T C3N-01012 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/842d9fda-2831-46b3-9416-4ed6b476f11a/203561450041_R01C01_Grn.idat 13676218 IDAT NA 842d9fda-2831-46b3-9416-4ed6b476f11a katmai C3N-01012.MethArray.Red.T C3N-01012 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5a2ad8d9-84d6-4d38-8104-d7918b4ec198/203561450041_R01C01_Red.idat 13676218 IDAT NA 5a2ad8d9-84d6-4d38-8104-d7918b4ec198 katmai C3N-01012.miRNA-Seq.T C3N-01012 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a3afdd3f-66fd-4520-9cb2-e6778037e6ed/190712_UNC32-K00270_0192_BH7HL3BBXY_ACTTGA_S31_L005_R1_001.unaln.bam 258753704 BAM NA a3afdd3f-66fd-4520-9cb2-e6778037e6ed katmai C3N-01012.miRNA-Seq.T.hg38 C3N-01012 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ba62fa7d-d00b-446b-b9c4-ab3effd37e53/e14fe70b-915e-44c0-9868-58a2e5e8e3ae_mirnaseq_gdc_realn.bam 290357937 BAM hg38 ba62fa7d-d00b-446b-b9c4-ab3effd37e53 katmai -C3N-01012.RNA-Seq.genomic.T.hg38 C3N-01012 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/24925754-92c3-4a23-8356-cce927f72c7f/9f0a72a1-aaaa-4147-aadd-ee7fbab14513.rna_seq.genomic.gdc_realn.bam 11979143872 BAM hg38 24925754-92c3-4a23-8356-cce927f72c7f katmai C3N-01016.MethArray.Green.A C3N-01016 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9526aa43-7c65-4573-8702-885bdbe8f8b9/203027390105_R04C01_Grn.idat 13676226 IDAT NA 9526aa43-7c65-4573-8702-885bdbe8f8b9 katmai C3N-01016.MethArray.Green.T C3N-01016 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8242bdf2-6bc8-4935-8cbd-ff6a2d5fbc31/202184990066_R07C01_Grn.idat 13676216 IDAT NA 8242bdf2-6bc8-4935-8cbd-ff6a2d5fbc31 katmai C3N-01016.MethArray.Red.A C3N-01016 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/00d1d979-6a24-466b-a676-c73993da3fa3/203027390105_R04C01_Red.idat 13676226 IDAT NA 00d1d979-6a24-466b-a676-c73993da3fa3 katmai @@ -5933,32 +5727,22 @@ C3N-01165.MethArray.Green.T.DEEP_v6g4pX C3N-01165 PDA Methylation Array tumor /d C3N-01165.MethArray.Red.T.DEEP_v6g4pX C3N-01165 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/928411ca-b73b-4962-8cf1-a2ee2bacf803/202234360029_R05C01_Red.idat 13676241 IDAT NA 928411ca-b73b-4962-8cf1-a2ee2bacf803 katmai C3N-01165.miRNA-Seq.T C3N-01165 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a4bb9742-712a-4628-81e6-e173bf2471d3/180828_UNC32-K00270_0112_AHWTLNBBXX_CATGGC_S40_L007_R1_001.unaln.bam 231459983 BAM NA a4bb9742-712a-4628-81e6-e173bf2471d3 katmai C3N-01165.miRNA-Seq.T.hg38 C3N-01165 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/474a0f30-7263-4cb6-9680-de3314ef21f0/fde92faa-7c74-4f79-bac9-6be631daf1e1_mirnaseq_gdc_realn.bam 261501289 BAM hg38 474a0f30-7263-4cb6-9680-de3314ef21f0 katmai -C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/050460ea-6b34-4fcf-8c67-81323fae8e71/242a2ff6-a9c7-4bfb-9316-0214c015c015.rna_seq.genomic.gdc_realn.bam 10077580481 BAM hg38 050460ea-6b34-4fcf-8c67-81323fae8e71 katmai -C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/050460ea-6b34-4fcf-8c67-81323fae8e71/242a2ff6-a9c7-4bfb-9316-0214c015c015.rna_seq.genomic.gdc_realn.bam 10077580481 BAM hg38 050460ea-6b34-4fcf-8c67-81323fae8e71 katmai C3N-01166.MethArray.Green.T.DEEP_v6o9wL C3N-01166 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b0a49f82-f8bf-45f8-859f-9fadc75f33f6/202234380102_R06C01_Grn.idat 13676231 IDAT NA b0a49f82-f8bf-45f8-859f-9fadc75f33f6 katmai C3N-01166.MethArray.Red.T.DEEP_v6o9wL C3N-01166 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/059c3e26-1f5c-4560-bfff-b5d925f18b24/202234380102_R06C01_Red.idat 13676231 IDAT NA 059c3e26-1f5c-4560-bfff-b5d925f18b24 katmai C3N-01166.miRNA-Seq.T C3N-01166 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/06d02bbf-4870-4568-9259-f3532a60c915/180828_UNC32-K00270_0112_AHWTLNBBXX_CATTTT_S41_L007_R1_001.unaln.bam 336784270 BAM NA 06d02bbf-4870-4568-9259-f3532a60c915 katmai C3N-01166.miRNA-Seq.T.hg38 C3N-01166 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6d353ee8-6aa0-4d13-a24b-7837c0038efb/76121067-2dd1-422a-8d73-0d105a85f876_mirnaseq_gdc_realn.bam 377267757 BAM hg38 6d353ee8-6aa0-4d13-a24b-7837c0038efb katmai -C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a1661cc5-1476-4f1c-8079-78de9a18ce4b/68b98d5a-3f6a-473b-9aed-8b1219e416dc.rna_seq.genomic.gdc_realn.bam 10665812889 BAM hg38 a1661cc5-1476-4f1c-8079-78de9a18ce4b katmai -C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a1661cc5-1476-4f1c-8079-78de9a18ce4b/68b98d5a-3f6a-473b-9aed-8b1219e416dc.rna_seq.genomic.gdc_realn.bam 10665812889 BAM hg38 a1661cc5-1476-4f1c-8079-78de9a18ce4b katmai C3N-01167.MethArray.Green.T.DEEP_vv7A3m C3N-01167 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b21e4860-95ff-4ca0-9ec6-6b6c922ff476/202184900110_R04C01_Grn.idat 13676256 IDAT NA b21e4860-95ff-4ca0-9ec6-6b6c922ff476 katmai C3N-01167.MethArray.Red.T.DEEP_vv7A3m C3N-01167 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/04d9045e-ee0e-45ba-b936-893433c0beaa/202184900110_R04C01_Red.idat 13676256 IDAT NA 04d9045e-ee0e-45ba-b936-893433c0beaa katmai C3N-01167.miRNA-Seq.T C3N-01167 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5f8d15c-628d-4195-a6f6-26f09564156f/181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L008_R1_001.unaln.bam 254119241 BAM NA f5f8d15c-628d-4195-a6f6-26f09564156f katmai C3N-01167.miRNA-Seq.T.hg38 C3N-01167 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4cbb6a21-b1d0-4c5c-a31d-2c833a0d586d/41130c6f-2b96-4a59-b925-231a2ff55578_mirnaseq_gdc_realn.bam 279684342 BAM hg38 4cbb6a21-b1d0-4c5c-a31d-2c833a0d586d katmai -C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ca651b7c-5be4-41c7-95f5-95fef7b32cc3/9e8ab4ab-80c8-415a-bd8c-628920e8f55a.rna_seq.genomic.gdc_realn.bam 8551322091 BAM hg38 ca651b7c-5be4-41c7-95f5-95fef7b32cc3 katmai -C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ca651b7c-5be4-41c7-95f5-95fef7b32cc3/9e8ab4ab-80c8-415a-bd8c-628920e8f55a.rna_seq.genomic.gdc_realn.bam 8551322091 BAM hg38 ca651b7c-5be4-41c7-95f5-95fef7b32cc3 katmai C3N-01168.MethArray.Green.T.DEEP_rWRLE4 C3N-01168 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/affc4be9-7fab-49e4-9127-bb093b757b3a/202234370079_R07C01_Grn.idat 13676231 IDAT NA affc4be9-7fab-49e4-9127-bb093b757b3a katmai C3N-01168.MethArray.Red.T.DEEP_rWRLE4 C3N-01168 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c3226a70-61f5-498c-b4dc-cc996fdf50ce/202234370079_R07C01_Red.idat 13676231 IDAT NA c3226a70-61f5-498c-b4dc-cc996fdf50ce katmai C3N-01168.miRNA-Seq.T C3N-01168 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2135e2ed-9156-44ab-9757-e1644237e949/180828_UNC32-K00270_0112_AHWTLNBBXX_CCAACA_S42_L007_R1_001.unaln.bam 238879218 BAM NA 2135e2ed-9156-44ab-9757-e1644237e949 katmai C3N-01168.miRNA-Seq.T.hg38 C3N-01168 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c238c28c-1a51-4f10-9d66-3e7c7e28d9b0/47cbc7a6-d354-483d-a044-5a02bdb74cf4_mirnaseq_gdc_realn.bam 266021926 BAM hg38 c238c28c-1a51-4f10-9d66-3e7c7e28d9b0 katmai -C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4d797a95-bbfa-4798-b594-3819822c2a8b/2153b0c8-f9a0-4c5c-b2be-4674dff93a1a.rna_seq.genomic.gdc_realn.bam 8663426819 BAM hg38 4d797a95-bbfa-4798-b594-3819822c2a8b katmai -C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4d797a95-bbfa-4798-b594-3819822c2a8b/2153b0c8-f9a0-4c5c-b2be-4674dff93a1a.rna_seq.genomic.gdc_realn.bam 8663426819 BAM hg38 4d797a95-bbfa-4798-b594-3819822c2a8b katmai C3N-01169.MethArray.Green.T.DEEP_v6l7gg C3N-01169 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1fa21d3b-2bf0-49e7-99cd-da3e15798d66/202234380024_R07C01_Grn.idat 13676246 IDAT NA 1fa21d3b-2bf0-49e7-99cd-da3e15798d66 katmai C3N-01169.MethArray.Red.T.DEEP_v6l7gg C3N-01169 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cb7c33a9-4017-4e5c-9318-4ec3c91d7a27/202234380024_R07C01_Red.idat 13676246 IDAT NA cb7c33a9-4017-4e5c-9318-4ec3c91d7a27 katmai C3N-01169.miRNA-Seq.T C3N-01169 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/05341272-cc50-4983-9049-6f4f3adab8b3/180828_UNC32-K00270_0112_AHWTLNBBXX_CGGAAT_S43_L007_R1_001.unaln.bam 332715692 BAM NA 05341272-cc50-4983-9049-6f4f3adab8b3 katmai C3N-01169.miRNA-Seq.T.hg38 C3N-01169 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7c3967af-b323-4b32-b260-7d807965857b/69fa27fe-9baa-4599-9490-8c89ec48dcf3_mirnaseq_gdc_realn.bam 371346861 BAM hg38 7c3967af-b323-4b32-b260-7d807965857b katmai -C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/72fd9b3e-ad2e-401c-8a16-de0c6eefc860/23e43a62-39b6-445c-ae96-871d1ed0981f.rna_seq.genomic.gdc_realn.bam 9845556524 BAM hg38 72fd9b3e-ad2e-401c-8a16-de0c6eefc860 katmai -C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/72fd9b3e-ad2e-401c-8a16-de0c6eefc860/23e43a62-39b6-445c-ae96-871d1ed0981f.rna_seq.genomic.gdc_realn.bam 9845556524 BAM hg38 72fd9b3e-ad2e-401c-8a16-de0c6eefc860 katmai C3N-01171.MethArray.Green.T C3N-01171 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0b94642b-47ea-4803-95b0-96218321b289/202234380017_R05C01_Grn.idat 13676231 IDAT NA 0b94642b-47ea-4803-95b0-96218321b289 katmai C3N-01171.MethArray.Red.T C3N-01171 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bd99f0f7-fd36-41ff-b4e2-bf27cff64241/202234380017_R05C01_Red.idat 13676231 IDAT NA bd99f0f7-fd36-41ff-b4e2-bf27cff64241 katmai C3N-01171.miRNA-Seq.T C3N-01171 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a3fd642-db93-40bf-a631-4396681f7316/180828_UNC32-K00270_0112_AHWTLNBBXX_CTAGCT_S44_L007_R1_001.unaln.bam 245716367 BAM NA 8a3fd642-db93-40bf-a631-4396681f7316 katmai @@ -6237,53 +6021,35 @@ C3N-01370.MethArray.Green.T C3N-01370 GBM Methylation Array tumor /diskmnt/Proje C3N-01370.MethArray.Red.T C3N-01370 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3d298857-d0c1-4988-b018-e0a6e93ca776/203027390105_R06C01_Red.idat 13676226 IDAT NA 3d298857-d0c1-4988-b018-e0a6e93ca776 katmai C3N-01375.miRNA-Seq.T C3N-01375 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c731a132-c70d-4c56-a21b-40271cafe848/181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L008_R1_001.unaln.bam 204619641 BAM NA c731a132-c70d-4c56-a21b-40271cafe848 katmai C3N-01375.miRNA-Seq.T.hg38 C3N-01375 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fe30ed2d-bbbe-442e-86b9-277fc2493de7/e438227a-2590-40a3-8920-50bd71840366_mirnaseq_gdc_realn.bam 225484135 BAM hg38 fe30ed2d-bbbe-442e-86b9-277fc2493de7 katmai -C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/08ae1a2f-7690-4442-9540-24453fcbf4da/298b81f7-eb41-43cd-a438-1c9c168ba4e4.rna_seq.genomic.gdc_realn.bam 7815912943 BAM hg38 08ae1a2f-7690-4442-9540-24453fcbf4da katmai -C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/08ae1a2f-7690-4442-9540-24453fcbf4da/298b81f7-eb41-43cd-a438-1c9c168ba4e4.rna_seq.genomic.gdc_realn.bam 7815912943 BAM hg38 08ae1a2f-7690-4442-9540-24453fcbf4da katmai C3N-01378.MethArray.Green.T C3N-01378 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/867c38e1-6ed5-4b29-8fcc-3a8ef4351e84/202178770100_R04C01_Grn.idat 13676231 IDAT NA 867c38e1-6ed5-4b29-8fcc-3a8ef4351e84 katmai C3N-01378.MethArray.Red.T C3N-01378 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7909e64f-a78c-4750-a274-cfb91b95b10c/202178770100_R04C01_Red.idat 13676231 IDAT NA 7909e64f-a78c-4750-a274-cfb91b95b10c katmai C3N-01378.miRNA-Seq.T C3N-01378 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a4bffd09-4a25-475b-af16-2b83241056c4/181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L008_R1_001.unaln.bam 241539795 BAM NA a4bffd09-4a25-475b-af16-2b83241056c4 katmai C3N-01378.miRNA-Seq.T.hg38 C3N-01378 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5f667b93-d98e-4c2c-958a-4c793d0d5556/c637b37f-b474-4c0d-b7cf-91784955aef4_mirnaseq_gdc_realn.bam 264907202 BAM hg38 5f667b93-d98e-4c2c-958a-4c793d0d5556 katmai -C3N-01378.RNA-Seq.genomic.T.hg38 C3N-01378 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/036e1b0b-f54e-4b13-93ff-251475e68bd2/3bc47735-8aad-4008-88ca-d974d4bd89ad.rna_seq.genomic.gdc_realn.bam 8172046299 BAM hg38 036e1b0b-f54e-4b13-93ff-251475e68bd2 katmai -C3N-01378.RNA-Seq.genomic.T.hg38 C3N-01378 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/036e1b0b-f54e-4b13-93ff-251475e68bd2/3bc47735-8aad-4008-88ca-d974d4bd89ad.rna_seq.genomic.gdc_realn.bam 8172046299 BAM hg38 036e1b0b-f54e-4b13-93ff-251475e68bd2 katmai C3N-01379.MethArray.Green.T C3N-01379 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0a3a1ff9-ea3e-44e9-bfc2-60b73fdb2a68/202184990013_R04C01_Grn.idat 13676226 IDAT NA 0a3a1ff9-ea3e-44e9-bfc2-60b73fdb2a68 katmai C3N-01379.MethArray.Red.T C3N-01379 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4d8455da-d08d-4a9c-9386-bf6080a46eea/202184990013_R04C01_Red.idat 13676226 IDAT NA 4d8455da-d08d-4a9c-9386-bf6080a46eea katmai C3N-01379.miRNA-Seq.T C3N-01379 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7e48d40e-543a-4228-a066-3eb83fa37c3d/181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L008_R1_001.unaln.bam 230932176 BAM NA 7e48d40e-543a-4228-a066-3eb83fa37c3d katmai C3N-01379.miRNA-Seq.T.hg38 C3N-01379 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/46065b0b-ce4e-4cb6-a5d1-f71f3890fba0/a859ebd7-9363-4609-b2a0-6e17a350fc52_mirnaseq_gdc_realn.bam 249707600 BAM hg38 46065b0b-ce4e-4cb6-a5d1-f71f3890fba0 katmai -C3N-01379.RNA-Seq.genomic.T.hg38 C3N-01379 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/50910ae4-2203-49dc-82f0-3260756b4c99/05d0e3c4-841a-4401-a187-1eaacbed83c5.rna_seq.genomic.gdc_realn.bam 8723276522 BAM hg38 50910ae4-2203-49dc-82f0-3260756b4c99 katmai -C3N-01379.RNA-Seq.genomic.T.hg38 C3N-01379 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/50910ae4-2203-49dc-82f0-3260756b4c99/05d0e3c4-841a-4401-a187-1eaacbed83c5.rna_seq.genomic.gdc_realn.bam 8723276522 BAM hg38 50910ae4-2203-49dc-82f0-3260756b4c99 katmai C3N-01380.MethArray.Green.T.DEEP_vvplPL C3N-01380 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20df486d-a9c4-4ac8-b840-a1ec9c9a4d3c/202163550007_R04C01_Grn.idat 13676226 IDAT NA 20df486d-a9c4-4ac8-b840-a1ec9c9a4d3c katmai C3N-01380.MethArray.Red.T.DEEP_vvplPL C3N-01380 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6d3b4a7b-949f-487c-97ca-cac7222520d6/202163550007_R04C01_Red.idat 13676226 IDAT NA 6d3b4a7b-949f-487c-97ca-cac7222520d6 katmai C3N-01380.miRNA-Seq.T C3N-01380 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/784334e9-5638-4a8f-9f6c-ba1342bbaec1/181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L008_R1_001.unaln.bam 201245981 BAM NA 784334e9-5638-4a8f-9f6c-ba1342bbaec1 katmai C3N-01380.miRNA-Seq.T.hg38 C3N-01380 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/2754e5af-3557-4d8f-97d4-0d5f94093c48/e24e5775-5795-4f87-b95b-e6ad6284712b_mirnaseq_gdc_realn.bam 223779343 BAM hg38 2754e5af-3557-4d8f-97d4-0d5f94093c48 katmai -C3N-01380.RNA-Seq.genomic.T.hg38 C3N-01380 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/41b9e906-4c71-44b7-908c-b23ff6663a33/66f631d6-56d1-4120-b757-89c567c621c7.rna_seq.genomic.gdc_realn.bam 7916275868 BAM hg38 41b9e906-4c71-44b7-908c-b23ff6663a33 katmai -C3N-01380.RNA-Seq.genomic.T.hg38 C3N-01380 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/41b9e906-4c71-44b7-908c-b23ff6663a33/66f631d6-56d1-4120-b757-89c567c621c7.rna_seq.genomic.gdc_realn.bam 7916275868 BAM hg38 41b9e906-4c71-44b7-908c-b23ff6663a33 katmai C3N-01381.MethArray.Green.T C3N-01381 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8311a8e3-65c5-41d1-8ecd-6d2c81e1091f/202234380024_R08C01_Grn.idat 13676246 IDAT NA 8311a8e3-65c5-41d1-8ecd-6d2c81e1091f katmai C3N-01381.MethArray.Red.T C3N-01381 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e817bc6b-c074-4ebf-9863-53753e4354ee/202234380024_R08C01_Red.idat 13676246 IDAT NA e817bc6b-c074-4ebf-9863-53753e4354ee katmai C3N-01381.miRNA-Seq.T C3N-01381 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d5121478-dea8-48e2-b934-8619aff6ca5c/180828_UNC32-K00270_0112_AHWTLNBBXX_TCGAAG_S29_L007_R1_001.unaln.bam 153502345 BAM NA d5121478-dea8-48e2-b934-8619aff6ca5c katmai C3N-01381.miRNA-Seq.T.hg38 C3N-01381 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/03f407e6-8bf7-4b0e-886c-73e700829e49/35eb68fa-7867-402e-bf76-b40739f5e337_mirnaseq_gdc_realn.bam 172426725 BAM hg38 03f407e6-8bf7-4b0e-886c-73e700829e49 katmai -C3N-01381.RNA-Seq.genomic.T.hg38 C3N-01381 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d7bac974-2115-4aab-aa47-52440a0a0bb0/01d1f449-f865-4a5e-825f-a02f77d97390.rna_seq.genomic.gdc_realn.bam 9498817592 BAM hg38 d7bac974-2115-4aab-aa47-52440a0a0bb0 katmai -C3N-01381.RNA-Seq.genomic.T.hg38 C3N-01381 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d7bac974-2115-4aab-aa47-52440a0a0bb0/01d1f449-f865-4a5e-825f-a02f77d97390.rna_seq.genomic.gdc_realn.bam 9498817592 BAM hg38 d7bac974-2115-4aab-aa47-52440a0a0bb0 katmai C3N-01382.MethArray.Green.T C3N-01382 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fc2bcf3c-5d16-4ff3-9b3a-c515f6a641ab/202234370119_R07C01_Grn.idat 13676231 IDAT NA fc2bcf3c-5d16-4ff3-9b3a-c515f6a641ab katmai C3N-01382.MethArray.Red.T C3N-01382 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cc1564d8-21be-450a-a8ff-1024fb65c789/202234370119_R07C01_Red.idat 13676231 IDAT NA cc1564d8-21be-450a-a8ff-1024fb65c789 katmai C3N-01382.miRNA-Seq.T C3N-01382 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ee2223d0-4d9c-4b73-bb6d-ecf28fac14df/180828_UNC32-K00270_0112_AHWTLNBBXX_TCGGCA_S28_L007_R1_001.unaln.bam 170595078 BAM NA ee2223d0-4d9c-4b73-bb6d-ecf28fac14df katmai C3N-01382.miRNA-Seq.T.hg38 C3N-01382 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9186f778-53ef-4196-ba94-6c75f4fb9615/2175ca8c-4f7a-466f-8adc-6d084f5ad60f_mirnaseq_gdc_realn.bam 192142620 BAM hg38 9186f778-53ef-4196-ba94-6c75f4fb9615 katmai -C3N-01382.RNA-Seq.genomic.T.hg38 C3N-01382 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3c9a3d8b-53da-47c8-9059-d708a04b2881/7423131e-e16c-4446-b69b-e8a8ae82957f.rna_seq.genomic.gdc_realn.bam 8386104537 BAM hg38 3c9a3d8b-53da-47c8-9059-d708a04b2881 katmai -C3N-01382.RNA-Seq.genomic.T.hg38 C3N-01382 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3c9a3d8b-53da-47c8-9059-d708a04b2881/7423131e-e16c-4446-b69b-e8a8ae82957f.rna_seq.genomic.gdc_realn.bam 8386104537 BAM hg38 3c9a3d8b-53da-47c8-9059-d708a04b2881 katmai C3N-01383.MethArray.Green.T C3N-01383 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d3b920f4-066c-4d21-ae77-e6cf6298dbc0/202234380102_R03C01_Grn.idat 13676232 IDAT NA d3b920f4-066c-4d21-ae77-e6cf6298dbc0 katmai C3N-01383.MethArray.Red.T C3N-01383 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d33cc5bc-5134-4dc1-bfa6-66f4289f7493/202234380102_R03C01_Red.idat 13676232 IDAT NA d33cc5bc-5134-4dc1-bfa6-66f4289f7493 katmai C3N-01383.miRNA-Seq.T C3N-01383 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/806ee726-da57-4323-a3a8-44d883b359d3/181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L008_R1_001.unaln.bam 217395673 BAM NA 806ee726-da57-4323-a3a8-44d883b359d3 katmai C3N-01383.miRNA-Seq.T.hg38 C3N-01383 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a309309f-1345-4e05-9bc8-8a221f59cc19/49cf8729-f504-4924-b59c-0dc25a1f8ec5_mirnaseq_gdc_realn.bam 243541612 BAM hg38 a309309f-1345-4e05-9bc8-8a221f59cc19 katmai -C3N-01383.RNA-Seq.genomic.T.hg38 C3N-01383 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/61a5ff54-d0a8-4685-b121-79cf5489f3eb/5074cdf5-cf1a-40bf-a37d-3aaf3d5d4698.rna_seq.genomic.gdc_realn.bam 6907705949 BAM hg38 61a5ff54-d0a8-4685-b121-79cf5489f3eb katmai -C3N-01383.RNA-Seq.genomic.T.hg38 C3N-01383 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/61a5ff54-d0a8-4685-b121-79cf5489f3eb/5074cdf5-cf1a-40bf-a37d-3aaf3d5d4698.rna_seq.genomic.gdc_realn.bam 6907705949 BAM hg38 61a5ff54-d0a8-4685-b121-79cf5489f3eb katmai C3N-01385.RNA-Seq.genomic.T.BIOTEXT_VglkKv.hg38 C3N-01385 PDA RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/307b4934-d214-4c65-91f8-75cd047bf8d5/81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.genomic.gdc_realn.bam 13691636489 BAM hg38 307b4934-d214-4c65-91f8-75cd047bf8d5 katmai C3N-01388.miRNA-Seq.T C3N-01388 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b245afc2-1540-4b04-8cc3-a4bf672396c7/181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L008_R1_001.unaln.bam 270159749 BAM NA b245afc2-1540-4b04-8cc3-a4bf672396c7 katmai C3N-01388.miRNA-Seq.T.hg38 C3N-01388 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4f3c87ca-12d0-4312-9c85-7969e1b70dcd/7ef9601d-289f-47bf-9c03-a85cfd6627a4_mirnaseq_gdc_realn.bam 292719523 BAM hg38 4f3c87ca-12d0-4312-9c85-7969e1b70dcd katmai -C3N-01388.RNA-Seq.genomic.T.hg38 C3N-01388 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/779cb2a8-99ec-4fa1-8600-a9c77e2ac5b7/88bcc0e0-cace-4364-a62b-297596274401.rna_seq.genomic.gdc_realn.bam 7059320826 BAM hg38 779cb2a8-99ec-4fa1-8600-a9c77e2ac5b7 katmai -C3N-01388.RNA-Seq.genomic.T.hg38 C3N-01388 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/779cb2a8-99ec-4fa1-8600-a9c77e2ac5b7/88bcc0e0-cace-4364-a62b-297596274401.rna_seq.genomic.gdc_realn.bam 7059320826 BAM hg38 779cb2a8-99ec-4fa1-8600-a9c77e2ac5b7 katmai C3N-01389.miRNA-Seq.T C3N-01389 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5755c7e4-1466-467c-8778-c315681177c0/181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 259020610 BAM NA 5755c7e4-1466-467c-8778-c315681177c0 katmai C3N-01389.miRNA-Seq.T.hg38 C3N-01389 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4ae0d4b2-08b0-4b35-87cf-1526406925ad/8a343728-fed0-4ff1-9cf4-def00289ac78_mirnaseq_gdc_realn.bam 277678019 BAM hg38 4ae0d4b2-08b0-4b35-87cf-1526406925ad katmai -C3N-01389.RNA-Seq.genomic.T.hg38 C3N-01389 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/39177289-c48b-4559-b517-16b59cd320b0/c84643a0-a977-462f-a50b-6e4ede7f84ae.rna_seq.genomic.gdc_realn.bam 7753427978 BAM hg38 39177289-c48b-4559-b517-16b59cd320b0 katmai -C3N-01389.RNA-Seq.genomic.T.hg38 C3N-01389 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/39177289-c48b-4559-b517-16b59cd320b0/c84643a0-a977-462f-a50b-6e4ede7f84ae.rna_seq.genomic.gdc_realn.bam 7753427978 BAM hg38 39177289-c48b-4559-b517-16b59cd320b0 katmai C3N-01405.MethArray.Green.A C3N-01405 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0cb3abf8-22d4-47a9-b2bb-bf223aac5473/203028200014_R08C01_Grn.idat 13676226 IDAT NA 0cb3abf8-22d4-47a9-b2bb-bf223aac5473 katmai C3N-01405.MethArray.Green.T C3N-01405 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/028711e2-d7bb-406b-81a3-fcdc0af77eb4/202234380062_R02C01_Grn.idat 13676231 IDAT NA 028711e2-d7bb-406b-81a3-fcdc0af77eb4 katmai C3N-01405.MethArray.Red.A C3N-01405 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fc73ff74-0bde-42f9-a829-c18e692e3a17/203028200014_R08C01_Red.idat 13676226 IDAT NA fc73ff74-0bde-42f9-a829-c18e692e3a17 katmai @@ -6393,8 +6159,6 @@ C3N-01502.MethArray.Green.T.DEEP_rp63A6 C3N-01502 PDA Methylation Array tumor /d C3N-01502.MethArray.Red.T.DEEP_rp63A6 C3N-01502 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a8e12dc-7e97-4f17-9755-17c6fe9285b0/202184990052_R06C01_Red.idat 13676226 IDAT NA 8a8e12dc-7e97-4f17-9755-17c6fe9285b0 katmai C3N-01502.miRNA-Seq.T C3N-01502 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3bb977cf-f8b0-4be3-8233-c7774353fe60/181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 224703888 BAM NA 3bb977cf-f8b0-4be3-8233-c7774353fe60 katmai C3N-01502.miRNA-Seq.T.hg38 C3N-01502 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3085592d-cd8d-405e-81ef-b321df20e6eb/a466c026-74d9-46b7-8163-46fabab9b1f9_mirnaseq_gdc_realn.bam 247185270 BAM hg38 3085592d-cd8d-405e-81ef-b321df20e6eb katmai -C3N-01502.RNA-Seq.genomic.T.hg38 C3N-01502 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dc6b5601-1735-45b9-9c9f-d61345a1ae4d/1f4cddf9-8376-4fc1-9320-8770b5b8177a.rna_seq.genomic.gdc_realn.bam 9847826314 BAM hg38 dc6b5601-1735-45b9-9c9f-d61345a1ae4d katmai -C3N-01502.RNA-Seq.genomic.T.hg38 C3N-01502 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dc6b5601-1735-45b9-9c9f-d61345a1ae4d/1f4cddf9-8376-4fc1-9320-8770b5b8177a.rna_seq.genomic.gdc_realn.bam 9847826314 BAM hg38 dc6b5601-1735-45b9-9c9f-d61345a1ae4d katmai C3N-01505.MethArray.Green.T C3N-01505 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9bbe8147-627f-4482-8958-ce67c5278244/202234360009_R04C01_Grn.idat 13676226 IDAT NA 9bbe8147-627f-4482-8958-ce67c5278244 katmai C3N-01505.MethArray.Red.T C3N-01505 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6e105bc1-e17d-4338-8880-bb0712b5c3aa/202234360009_R04C01_Red.idat 13676226 IDAT NA 6e105bc1-e17d-4338-8880-bb0712b5c3aa katmai C3N-01505.miRNA-Seq.T C3N-01505 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/01ac63d2-73e4-4a02-80cf-2c9b24969b03/180724_UNC32-K00270_0106_BHWK3MBBXX_ATTCCT_S3_L007_R1_001.unaln.bam 202941163 BAM NA 01ac63d2-73e4-4a02-80cf-2c9b24969b03 katmai @@ -6611,16 +6375,10 @@ C3N-01657.miRNA-Seq.T C3N-01657 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_do C3N-01657.RNA-Seq.genomic.T.hg38 C3N-01657 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/18973fd6-0be3-4d15-93cc-d062d5fe13fb/ba8da346-e615-4183-a383-a333b13cdbb4.rna_seq.genomic.gdc_realn.bam 8616298627 BAM hg38 18973fd6-0be3-4d15-93cc-d062d5fe13fb katmai C3N-01714.miRNA-Seq.T C3N-01714 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4084f86-ad01-4c93-a3e4-7a8def3e3d51/181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 257655218 BAM NA e4084f86-ad01-4c93-a3e4-7a8def3e3d51 katmai C3N-01714.miRNA-Seq.T.hg38 C3N-01714 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9fb548d8-1c71-412a-a3ec-6f107c666938/03220016-40c4-432e-a999-361c4298ca4d_mirnaseq_gdc_realn.bam 280941647 BAM hg38 9fb548d8-1c71-412a-a3ec-6f107c666938 katmai -C3N-01714.RNA-Seq.genomic.T.hg38 C3N-01714 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4f91e3e4-895b-41a5-8dfb-f932c10251ab/3558e56c-efea-425f-b4b3-6abbdc7fa012.rna_seq.genomic.gdc_realn.bam 11219667929 BAM hg38 4f91e3e4-895b-41a5-8dfb-f932c10251ab katmai -C3N-01714.RNA-Seq.genomic.T.hg38 C3N-01714 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4f91e3e4-895b-41a5-8dfb-f932c10251ab/3558e56c-efea-425f-b4b3-6abbdc7fa012.rna_seq.genomic.gdc_realn.bam 11219667929 BAM hg38 4f91e3e4-895b-41a5-8dfb-f932c10251ab katmai C3N-01715.miRNA-Seq.T C3N-01715 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/176f46d5-c7eb-4a42-8b3f-d85bccff90db/181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 220094750 BAM NA 176f46d5-c7eb-4a42-8b3f-d85bccff90db katmai C3N-01715.miRNA-Seq.T.hg38 C3N-01715 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3ea775c3-4d42-4f46-b295-e226831fd770/fc387d39-f4ce-44f9-a0ac-47007a2395a9_mirnaseq_gdc_realn.bam 240775400 BAM hg38 3ea775c3-4d42-4f46-b295-e226831fd770 katmai -C3N-01715.RNA-Seq.genomic.T.hg38 C3N-01715 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/33f89107-cad5-4c63-a42b-ead458e695e6/b679584c-eb24-4a66-a8d4-c4f972d6dc3e.rna_seq.genomic.gdc_realn.bam 9335030824 BAM hg38 33f89107-cad5-4c63-a42b-ead458e695e6 katmai -C3N-01715.RNA-Seq.genomic.T.hg38 C3N-01715 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/33f89107-cad5-4c63-a42b-ead458e695e6/b679584c-eb24-4a66-a8d4-c4f972d6dc3e.rna_seq.genomic.gdc_realn.bam 9335030824 BAM hg38 33f89107-cad5-4c63-a42b-ead458e695e6 katmai C3N-01716.miRNA-Seq.T C3N-01716 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/84710192-48fa-4293-a887-fef6aa2a07c6/181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L001_R1_001.unaln.bam 209900275 BAM NA 84710192-48fa-4293-a887-fef6aa2a07c6 katmai C3N-01716.miRNA-Seq.T.hg38 C3N-01716 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f5cbf907-7fd4-4856-9a08-db59c6b8398f/56c22a82-29ac-4cb9-8db9-062beaf34848_mirnaseq_gdc_realn.bam 229334850 BAM hg38 f5cbf907-7fd4-4856-9a08-db59c6b8398f katmai -C3N-01716.RNA-Seq.genomic.T.hg38 C3N-01716 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f9d59a2c-b29b-4904-9bc0-1663dace56d7/b4a77af3-84f2-46f4-8981-0dd43a68f3f3.rna_seq.genomic.gdc_realn.bam 9342725099 BAM hg38 f9d59a2c-b29b-4904-9bc0-1663dace56d7 katmai -C3N-01716.RNA-Seq.genomic.T.hg38 C3N-01716 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f9d59a2c-b29b-4904-9bc0-1663dace56d7/b4a77af3-84f2-46f4-8981-0dd43a68f3f3.rna_seq.genomic.gdc_realn.bam 9342725099 BAM hg38 f9d59a2c-b29b-4904-9bc0-1663dace56d7 katmai C3N-01719.MethArray.Green.A C3N-01719 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c087c478-9617-4191-ad12-fde079a19307/203561620054_R01C01_Grn.idat 13676231 IDAT NA c087c478-9617-4191-ad12-fde079a19307 katmai C3N-01719.MethArray.Green.T C3N-01719 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/381e4082-d07e-4eee-a9a6-f0405d653282/203561450068_R01C01_Grn.idat 13676211 IDAT NA 381e4082-d07e-4eee-a9a6-f0405d653282 katmai C3N-01719.MethArray.Red.A C3N-01719 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1affd762-3975-4c4a-bab0-8754e36d9f6e/203561620054_R01C01_Red.idat 13676231 IDAT NA 1affd762-3975-4c4a-bab0-8754e36d9f6e katmai @@ -6629,8 +6387,6 @@ C3N-01719.miRNA-Seq.A C3N-01719 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-01719.miRNA-Seq.A.hg38 C3N-01719 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/b5a5eabc-b9ba-4d63-9a23-41f148d61c7a/eaacb831-eafb-485b-a1ae-1c7acd602af0_mirnaseq_gdc_realn.bam 479096900 BAM hg38 b5a5eabc-b9ba-4d63-9a23-41f148d61c7a katmai C3N-01719.miRNA-Seq.T C3N-01719 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/88c1188a-e039-4870-91c4-42c33c358d64/190712_UNC32-K00270_0192_BH7HL3BBXY_GGTAGC_S47_L005_R1_001.unaln.bam 174581827 BAM NA 88c1188a-e039-4870-91c4-42c33c358d64 katmai C3N-01719.miRNA-Seq.T.hg38 C3N-01719 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0a9da40d-bab3-47ac-bf83-46a8ca1c3496/01886ee8-d131-471f-b2ee-551cdb80e6b3_mirnaseq_gdc_realn.bam 194806076 BAM hg38 0a9da40d-bab3-47ac-bf83-46a8ca1c3496 katmai -C3N-01719.RNA-Seq.genomic.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/24a27f42-9b87-44be-8474-b1cb46dc34c0/a92d6372-bc7e-425a-aeba-ffde0de048ed.rna_seq.genomic.gdc_realn.bam 10523265484 BAM hg38 24a27f42-9b87-44be-8474-b1cb46dc34c0 katmai -C3N-01719.RNA-Seq.genomic.T.hg38 C3N-01719 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8c2cede0-df3a-4661-ae98-c02e3109a6ba/3374ecd4-4607-4d77-946b-436d545cf8ea.rna_seq.genomic.gdc_realn.bam 6924541099 BAM hg38 8c2cede0-df3a-4661-ae98-c02e3109a6ba katmai C3N-01752.MethArray.Green.T C3N-01752 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cee81968-a447-4836-b571-5a2dfd074ea9/203271750083_R01C01_Grn.idat 13676206 IDAT NA cee81968-a447-4836-b571-5a2dfd074ea9 katmai C3N-01752.MethArray.Red.T C3N-01752 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4b3113d6-a977-4791-a941-9701b00d2b76/203271750083_R01C01_Red.idat 13676206 IDAT NA 4b3113d6-a977-4791-a941-9701b00d2b76 katmai C3N-01752.miRNA-Seq.T C3N-01752 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4e14e11b-fcc3-4c79-904a-a5bb603036dd/190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L001_R1_001.unaln.bam 171368662 BAM NA 4e14e11b-fcc3-4c79-904a-a5bb603036dd katmai @@ -6934,15 +6690,12 @@ C3N-01897.MethArray.Red.T.BULK_OVLqnQ C3N-01897 PDA Methylation Array tumor /dis C3N-01897.MethArray.Red.T.CORE_GyzgO3.core C3N-01897 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f46d2bb9-f6c8-4628-aaaa-e49c785f150c/203561450041_R03C01_Red.idat 13676216 IDAT NA f46d2bb9-f6c8-4628-aaaa-e49c785f150c katmai C3N-01897.miRNA-Seq.T C3N-01897 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/647b8a60-ede8-42cb-8ecd-803f74d97945/190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L002_R1_001.unaln.bam 170805407 BAM NA 647b8a60-ede8-42cb-8ecd-803f74d97945 katmai C3N-01897.miRNA-Seq.T.hg38 C3N-01897 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ee1d3e3b-da43-4fb7-b3ad-44c7c946bbb9/1ae4985d-1671-490c-86f9-b699cd136111_mirnaseq_gdc_realn.bam 191030037 BAM hg38 ee1d3e3b-da43-4fb7-b3ad-44c7c946bbb9 katmai -C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/2f89df8c-0e61-443f-864c-3484e1b8dc03/47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.genomic.gdc_realn.bam 12072962303 BAM hg38 2f89df8c-0e61-443f-864c-3484e1b8dc03 katmai -C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2f89df8c-0e61-443f-864c-3484e1b8dc03/47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.genomic.gdc_realn.bam 12072962303 BAM hg38 2f89df8c-0e61-443f-864c-3484e1b8dc03 katmai C3N-01898.RNA-Seq.genomic.T.BIOTEXT_R2jM2L.hg38 C3N-01898 PDA RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/63ea1b1d-2442-4b87-8f18-242f980c060b/741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.genomic.gdc_realn.bam 8527956869 BAM hg38 63ea1b1d-2442-4b87-8f18-242f980c060b katmai C3N-01899.RNA-Seq.genomic.T.BIOTEXT_VgZm7v.hg38 C3N-01899 PDA RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b80e4b7c-62f0-47c2-b20a-8f3fe8d7268d/67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.genomic.gdc_realn.bam 8747808499 BAM hg38 b80e4b7c-62f0-47c2-b20a-8f3fe8d7268d katmai C3N-01900.MethArray.Green.T C3N-01900 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ec22480d-960c-450f-baec-b3dded6df11e/203561450102_R01C01_Grn.idat 13676236 IDAT NA ec22480d-960c-450f-baec-b3dded6df11e katmai C3N-01900.MethArray.Red.T C3N-01900 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c23e280e-05d6-4622-bf1d-e81bd5d26b1d/203561450102_R01C01_Red.idat 13676236 IDAT NA c23e280e-05d6-4622-bf1d-e81bd5d26b1d katmai C3N-01900.miRNA-Seq.T C3N-01900 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4052e1de-db18-4cb2-92a5-ba03ae107ca1/190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L004_R1_001.unaln.bam 255444431 BAM NA 4052e1de-db18-4cb2-92a5-ba03ae107ca1 katmai C3N-01900.miRNA-Seq.T.hg38 C3N-01900 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d1f04ef1-4d47-41d1-be33-2ff045e98292/5b89d8c0-d217-4877-8462-371e7444a63b_mirnaseq_gdc_realn.bam 291362867 BAM hg38 d1f04ef1-4d47-41d1-be33-2ff045e98292 katmai -C3N-01900.RNA-Seq.genomic.T.hg38 C3N-01900 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a5706fa6-a92b-40d2-a2bf-b47844381471/99ac380d-73eb-41cf-ab1c-e0ed4c95eb77.rna_seq.genomic.gdc_realn.bam 8024048436 BAM hg38 a5706fa6-a92b-40d2-a2bf-b47844381471 katmai C3N-01902.MethArray.Green.T C3N-01902 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7f6e8260-a06e-4125-b2bb-bf3890bb1c8f/203219720211_R02C01_Grn.idat 13676246 IDAT NA 7f6e8260-a06e-4125-b2bb-bf3890bb1c8f katmai C3N-01902.MethArray.Red.T C3N-01902 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/714e57fe-1fd9-45ab-b0e6-57e3e022cf85/203219720211_R02C01_Red.idat 13676246 IDAT NA 714e57fe-1fd9-45ab-b0e6-57e3e022cf85 katmai C3N-01902.miRNA-Seq.A C3N-01902 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3ef42265-9682-41cf-8c76-103327d6ecbe/190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L005_R1_001.unaln.bam 250360607 BAM NA 3ef42265-9682-41cf-8c76-103327d6ecbe katmai @@ -6975,7 +6728,6 @@ C3N-01907.MethArray.Green.T C3N-01907 PDA Methylation Array tumor /diskmnt/Proje C3N-01907.MethArray.Red.T C3N-01907 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/82b508fd-6928-4aed-b5b0-f86e56eac933/203561620072_R01C01_Red.idat 13676218 IDAT NA 82b508fd-6928-4aed-b5b0-f86e56eac933 katmai C3N-01907.miRNA-Seq.T C3N-01907 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b0011162-0894-45c9-9a53-33f6f557b00f/190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L006_R1_001.unaln.bam 237720203 BAM NA b0011162-0894-45c9-9a53-33f6f557b00f katmai C3N-01907.miRNA-Seq.T.hg38 C3N-01907 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c050c3a8-20a5-4e1f-a8eb-ce3a41d7ecc4/5c0aa812-0a55-4ed4-8876-bb589be31409_mirnaseq_gdc_realn.bam 264132706 BAM hg38 c050c3a8-20a5-4e1f-a8eb-ce3a41d7ecc4 katmai -C3N-01907.RNA-Seq.genomic.T.hg38 C3N-01907 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4ff2731b-8775-4702-a0f1-2bd20387f033/2aeb5983-8002-40de-a2ed-ff376aa321af.rna_seq.genomic.gdc_realn.bam 11609819000 BAM hg38 4ff2731b-8775-4702-a0f1-2bd20387f033 katmai C3N-01943.MethArray.Green.A C3N-01943 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d85eb652-26a9-4d06-aaba-3d374ae0d577/203273200080_R01C01_Grn.idat 13676206 IDAT NA d85eb652-26a9-4d06-aaba-3d374ae0d577 katmai C3N-01943.MethArray.Green.T C3N-01943 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/95064813-5fc0-4ee2-b10b-7914402e9be2/203271750047_R02C01_Grn.idat 13676206 IDAT NA 95064813-5fc0-4ee2-b10b-7914402e9be2 katmai C3N-01943.MethArray.Red.A C3N-01943 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ca66d930-5ade-49af-9b59-9eae10a8b2cc/203273200080_R01C01_Red.idat 13676206 IDAT NA ca66d930-5ade-49af-9b59-9eae10a8b2cc katmai @@ -7026,18 +6778,12 @@ C3N-01997.MethArray.Green.A C3N-01997 PDA Methylation Array tissue_normal /diskm C3N-01997.MethArray.Red.A C3N-01997 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7f7d432e-9640-44b7-a1ee-8a541ba9a66b/203561450046_R08C01_Red.idat 13676211 IDAT NA 7f7d432e-9640-44b7-a1ee-8a541ba9a66b katmai C3N-01997.miRNA-Seq.T C3N-01997 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5d212e4-e0fd-4096-9fb7-2c96d4b77bf1/181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 161987937 BAM NA f5d212e4-e0fd-4096-9fb7-2c96d4b77bf1 katmai C3N-01997.miRNA-Seq.T.hg38 C3N-01997 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/58b5b8be-c1bd-4f07-84fa-f2b6da9e9f78/405a77a1-3f89-43bc-aa70-9e2279a3f535_mirnaseq_gdc_realn.bam 182314514 BAM hg38 58b5b8be-c1bd-4f07-84fa-f2b6da9e9f78 katmai -C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bbe23784-f8b3-40a1-be68-2595ba6e3bb3/d31bec57-bb27-4dfd-aec6-09c8d855dff1.rna_seq.genomic.gdc_realn.bam 8864184070 BAM hg38 bbe23784-f8b3-40a1-be68-2595ba6e3bb3 katmai -C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bbe23784-f8b3-40a1-be68-2595ba6e3bb3/d31bec57-bb27-4dfd-aec6-09c8d855dff1.rna_seq.genomic.gdc_realn.bam 8864184070 BAM hg38 bbe23784-f8b3-40a1-be68-2595ba6e3bb3 katmai C3N-01998.MethArray.Green.A C3N-01998 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e0971cc8-2322-4d63-a6a5-b64fa1ce6ddf/203561450018_R08C01_Grn.idat 13676216 IDAT NA e0971cc8-2322-4d63-a6a5-b64fa1ce6ddf katmai C3N-01998.MethArray.Red.A C3N-01998 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/547adec6-7c3a-43ec-b991-c31e13e86281/203561450018_R08C01_Red.idat 13676216 IDAT NA 547adec6-7c3a-43ec-b991-c31e13e86281 katmai C3N-01998.miRNA-Seq.A C3N-01998 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b65887d0-4102-4689-835b-d85e0fb2f08d/181108_UNC31-K00269_0162_AH255GBBXY_TATAAT_S20_L001_R1_001.unaln.bam 238427106 BAM NA b65887d0-4102-4689-835b-d85e0fb2f08d katmai C3N-01998.miRNA-Seq.A.hg38 C3N-01998 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/514a113a-e383-47ab-8437-eafe607de9a0/02356a70-ccea-42e5-9607-33e049aa6bcf_mirnaseq_gdc_realn.bam 263247250 BAM hg38 514a113a-e383-47ab-8437-eafe607de9a0 katmai C3N-01998.miRNA-Seq.T C3N-01998 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f50de58f-b9a0-4f61-9970-e0a4c842cc80/181108_UNC31-K00269_0162_AH255GBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 174250403 BAM NA f50de58f-b9a0-4f61-9970-e0a4c842cc80 katmai C3N-01998.miRNA-Seq.T.hg38 C3N-01998 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3422b968-70b9-4f01-8ef4-09a15a01b1a9/b1ba44d4-0c64-46bb-8b32-fd5040ef4f9d_mirnaseq_gdc_realn.bam 192094303 BAM hg38 3422b968-70b9-4f01-8ef4-09a15a01b1a9 katmai -C3N-01998.RNA-Seq.genomic.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3ff7805a-6b83-4e95-965d-102433495934/c176f25f-5df2-4b4f-8dfc-d74bf1f5b516.rna_seq.genomic.gdc_realn.bam 8375751610 BAM hg38 3ff7805a-6b83-4e95-965d-102433495934 katmai -C3N-01998.RNA-Seq.genomic.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3ff7805a-6b83-4e95-965d-102433495934/c176f25f-5df2-4b4f-8dfc-d74bf1f5b516.rna_seq.genomic.gdc_realn.bam 8375751610 BAM hg38 3ff7805a-6b83-4e95-965d-102433495934 katmai -C3N-01998.RNA-Seq.genomic.T.hg38 C3N-01998 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bd7f00bf-4be2-4b6c-bf65-22100fb50486/9378777f-c1ba-4e68-aada-9c5db0958ab8.rna_seq.genomic.gdc_realn.bam 8615494302 BAM hg38 bd7f00bf-4be2-4b6c-bf65-22100fb50486 katmai -C3N-01998.RNA-Seq.genomic.T.hg38 C3N-01998 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bd7f00bf-4be2-4b6c-bf65-22100fb50486/9378777f-c1ba-4e68-aada-9c5db0958ab8.rna_seq.genomic.gdc_realn.bam 8615494302 BAM hg38 bd7f00bf-4be2-4b6c-bf65-22100fb50486 katmai C3N-02000.MethArray.Green.A C3N-02000 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4def344-0cf4-4b3d-856f-b64420c68737/203027390105_R01C01_Grn.idat 13676226 IDAT NA e4def344-0cf4-4b3d-856f-b64420c68737 katmai C3N-02000.MethArray.Green.T C3N-02000 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ea7c884e-09ef-474f-adac-efa23116965a/203028200093_R03C01_Grn.idat 13676226 IDAT NA ea7c884e-09ef-474f-adac-efa23116965a katmai C3N-02000.MethArray.Red.A C3N-02000 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c2c76996-26d0-4bf2-9a51-8e40e070fa14/203027390105_R01C01_Red.idat 13676226 IDAT NA c2c76996-26d0-4bf2-9a51-8e40e070fa14 katmai @@ -7074,8 +6820,6 @@ C3N-02010.miRNA-Seq.A C3N-02010 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-02010.miRNA-Seq.A.hg38 C3N-02010 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/1fc6f794-4faf-4d34-9747-8ae21cf3b2a6/06f55666-c6cf-425e-9c1d-0ed980316a31_mirnaseq_gdc_realn.bam 273768593 BAM hg38 1fc6f794-4faf-4d34-9747-8ae21cf3b2a6 katmai C3N-02010.miRNA-Seq.T C3N-02010 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c542f01c-2759-4665-9940-98e691098f42/190712_UNC32-K00270_0192_BH7HL3BBXY_GATCAG_S32_L005_R1_001.unaln.bam 205258059 BAM NA c542f01c-2759-4665-9940-98e691098f42 katmai C3N-02010.miRNA-Seq.T.hg38 C3N-02010 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b0905aa8-e3b2-4b26-be4a-b79cc66c7143/08b29754-5e87-4a1d-845c-cb3c0d823cea_mirnaseq_gdc_realn.bam 229188098 BAM hg38 b0905aa8-e3b2-4b26-be4a-b79cc66c7143 katmai -C3N-02010.RNA-Seq.genomic.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5c122b48-b685-478a-bbe7-86fdae10feef/9f3000be-394d-4628-8ce2-0d3a569bf2b2.rna_seq.genomic.gdc_realn.bam 7409676949 BAM hg38 5c122b48-b685-478a-bbe7-86fdae10feef katmai -C3N-02010.RNA-Seq.genomic.T.hg38 C3N-02010 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4b1e2ea8-8c2c-453b-bc19-116d83984cc3/04e9f1b7-e17b-487f-85c5-2b4818547da7.rna_seq.genomic.gdc_realn.bam 8945156629 BAM hg38 4b1e2ea8-8c2c-453b-bc19-116d83984cc3 katmai C3N-02012.MethArray.Green.T C3N-02012 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f3094330-0878-4f1a-ac58-04dcab9220e8/203219650042_R03C01_Grn.idat 13676226 IDAT NA f3094330-0878-4f1a-ac58-04dcab9220e8 katmai C3N-02012.MethArray.Red.T C3N-02012 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/53e3174b-3223-4c54-a602-69e393b80e3f/203219650042_R03C01_Red.idat 13676226 IDAT NA 53e3174b-3223-4c54-a602-69e393b80e3f katmai C3N-02012.miRNA-Seq.T C3N-02012 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f5dc29dc-7ef5-424b-873c-79488c443f3f/190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L002_R1_001.unaln.bam 280980785 BAM NA f5dc29dc-7ef5-424b-873c-79488c443f3f katmai @@ -7139,8 +6883,6 @@ C3N-02068.miRNA-Seq.T C3N-02068 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_do C3N-02068.RNA-Seq.genomic.T.hg38 C3N-02068 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/6b2621d6-7024-4d8b-b2e7-64e991ecf26b/8c53ac7b-bcd4-4eaf-b4be-a8848ffa7541.rna_seq.genomic.gdc_realn.bam 8029960799 BAM hg38 6b2621d6-7024-4d8b-b2e7-64e991ecf26b katmai C3N-02069.miRNA-Seq.T C3N-02069 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9f4d5c3f-d5c3-4fd1-a450-1168fd87a70a/181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 296336053 BAM NA 9f4d5c3f-d5c3-4fd1-a450-1168fd87a70a katmai C3N-02069.miRNA-Seq.T.hg38 C3N-02069 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/fae904e6-8eed-439f-a142-c15b6eb478f8/7bfbb1fd-7e13-4907-93df-0211fe3afe4e_mirnaseq_gdc_realn.bam 322942729 BAM hg38 fae904e6-8eed-439f-a142-c15b6eb478f8 katmai -C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a6fca693-451f-4b71-9997-f1e35cdc6d13/87ebcc6c-e46a-44f8-be89-e3362f4308c3.rna_seq.genomic.gdc_realn.bam 10026317862 BAM hg38 a6fca693-451f-4b71-9997-f1e35cdc6d13 katmai -C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a6fca693-451f-4b71-9997-f1e35cdc6d13/87ebcc6c-e46a-44f8-be89-e3362f4308c3.rna_seq.genomic.gdc_realn.bam 10026317862 BAM hg38 a6fca693-451f-4b71-9997-f1e35cdc6d13 katmai C3N-02070.MethArray.Green.T C3N-02070 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a308613e-999c-4f6d-ab54-2d2576335e79/203219650202_R03C01_Grn.idat 13676216 IDAT NA a308613e-999c-4f6d-ab54-2d2576335e79 katmai C3N-02070.MethArray.Red.T C3N-02070 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/da3ef3e9-5521-4397-ad00-28359910995a/203219650202_R03C01_Red.idat 13676216 IDAT NA da3ef3e9-5521-4397-ad00-28359910995a katmai C3N-02070.miRNA-Seq.A C3N-02070 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7503d61e-ea30-4f01-a78a-3c49e736d3f9/190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L002_R1_001.unaln.bam 203409875 BAM NA 7503d61e-ea30-4f01-a78a-3c49e736d3f9 katmai @@ -7557,7 +7299,6 @@ C3N-02295.MethArray.Green.T C3N-02295 PDA Methylation Array tumor /diskmnt/Proje C3N-02295.MethArray.Red.T C3N-02295 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/00db9834-8045-4784-b63d-719f94ac349b/203561450084_R01C01_Red.idat 13676210 IDAT NA 00db9834-8045-4784-b63d-719f94ac349b katmai C3N-02295.miRNA-Seq.T C3N-02295 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b3e360a6-1aef-455d-9f51-ac8bcafbd0b1/190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 250372141 BAM NA b3e360a6-1aef-455d-9f51-ac8bcafbd0b1 katmai C3N-02295.miRNA-Seq.T.hg38 C3N-02295 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/567d9a17-9cb7-4221-9ca8-164533ddb228/7888ceea-bbbc-42f7-8272-fc00d123fe3b_mirnaseq_gdc_realn.bam 286565023 BAM hg38 567d9a17-9cb7-4221-9ca8-164533ddb228 katmai -C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6401b7b9-8871-42bb-ba8b-2bec0a89e359/a1e91af2-8b5d-4fb7-9519-1b17ed5b7d5f.rna_seq.genomic.gdc_realn.bam 9068778845 BAM hg38 6401b7b9-8871-42bb-ba8b-2bec0a89e359 katmai C3N-02296.MethArray.Green.T C3N-02296 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fd97327d-f5dc-4a41-a25d-75c146bab9bf/203561450023_R06C01_Grn.idat 13676221 IDAT NA fd97327d-f5dc-4a41-a25d-75c146bab9bf katmai C3N-02296.MethArray.Red.T C3N-02296 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5a3664a-ca1b-4ca6-befb-1892dafbd17d/203561450023_R06C01_Red.idat 13676221 IDAT NA f5a3664a-ca1b-4ca6-befb-1892dafbd17d katmai C3N-02296.miRNA-Seq.T C3N-02296 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f7144f2c-f7c7-410c-8ae7-e38f46696cc2/190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L001_R1_001.unaln.bam 222233772 BAM NA f7144f2c-f7c7-410c-8ae7-e38f46696cc2 katmai @@ -7783,7 +7524,6 @@ C3N-02573.MethArray.Green.T C3N-02573 PDA Methylation Array tumor /diskmnt/Proje C3N-02573.MethArray.Red.T C3N-02573 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ede867f5-207c-4cca-83a2-f4c4abc2e5b3/203561450025_R01C01_Red.idat 13676221 IDAT NA ede867f5-207c-4cca-83a2-f4c4abc2e5b3 katmai C3N-02573.miRNA-Seq.T C3N-02573 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/449b1224-de4e-4dd0-920d-2b041b7f8826/190712_UNC32-K00270_0192_BH7HL3BBXY_TAATCG_S18_L006_R1_001.unaln.bam 204662076 BAM NA 449b1224-de4e-4dd0-920d-2b041b7f8826 katmai C3N-02573.miRNA-Seq.T.hg38 C3N-02573 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/41668b57-5a93-4573-b30b-8b40777594ad/fc47ff09-3067-4751-925a-c6436aac7dab_mirnaseq_gdc_realn.bam 232658937 BAM hg38 41668b57-5a93-4573-b30b-8b40777594ad katmai -C3N-02573.RNA-Seq.genomic.T.hg38 C3N-02573 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6b33af3a-530e-4cd5-bb9d-020154812791/53286c96-2f8f-40fe-a404-d73607162a70.rna_seq.genomic.gdc_realn.bam 9746350795 BAM hg38 6b33af3a-530e-4cd5-bb9d-020154812791 katmai C3N-02575.MethArray.Green.A C3N-02575 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1934db23-7fb9-40c8-8f4a-96979cb391ee/203219640133_R01C01_Grn.idat 13676226 IDAT NA 1934db23-7fb9-40c8-8f4a-96979cb391ee katmai C3N-02575.MethArray.Green.T C3N-02575 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e8baedda-d9da-4613-960e-524fdc349143/203219640157_R01C01_Grn.idat 13676228 IDAT NA e8baedda-d9da-4613-960e-524fdc349143 katmai C3N-02575.MethArray.Red.A C3N-02575 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a5aefdfb-3f32-47d0-a78d-5f6662a59139/203219640133_R01C01_Red.idat 13676226 IDAT NA a5aefdfb-3f32-47d0-a78d-5f6662a59139 katmai @@ -7801,7 +7541,6 @@ C3N-02579.MethArray.Green.T C3N-02579 PDA Methylation Array tumor /diskmnt/Proje C3N-02579.MethArray.Red.T C3N-02579 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9ad24678-13dc-4881-bbb5-bcf48d20ab98/203561450030_R01C01_Red.idat 13676216 IDAT NA 9ad24678-13dc-4881-bbb5-bcf48d20ab98 katmai C3N-02579.miRNA-Seq.T C3N-02579 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/27c10aae-3492-414c-8950-4d47d0bd06ae/190712_UNC32-K00270_0192_BH7HL3BBXY_CAACTA_S5_L004_R1_001.unaln.bam 232196825 BAM NA 27c10aae-3492-414c-8950-4d47d0bd06ae katmai C3N-02579.miRNA-Seq.T.hg38 C3N-02579 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d7fbe228-f9f7-4d4e-aecf-ad2eac91c0ed/9473b7ab-a305-427e-a3eb-f2b0c420a94e_mirnaseq_gdc_realn.bam 262155140 BAM hg38 d7fbe228-f9f7-4d4e-aecf-ad2eac91c0ed katmai -C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1eb95990-3581-42f0-bbe2-24d423cd2aac/a60e85e1-a21e-4c1c-89f6-507cdc9bdf58.rna_seq.genomic.gdc_realn.bam 11340434997 BAM hg38 1eb95990-3581-42f0-bbe2-24d423cd2aac katmai C3N-02582.MethArray.Green.A C3N-02582 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e66223b9-5ebe-4bf7-9b58-5b38089ce840/203219650217_R08C01_Grn.idat 13676216 IDAT NA e66223b9-5ebe-4bf7-9b58-5b38089ce840 katmai C3N-02582.MethArray.Green.T C3N-02582 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ea7cd40b-1926-42d3-a161-4696a25454da/203219650042_R01C01_Grn.idat 13676229 IDAT NA ea7cd40b-1926-42d3-a161-4696a25454da katmai C3N-02582.MethArray.Red.A C3N-02582 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1367a200-2b5b-4762-9083-5e4991f4d326/203219650217_R08C01_Red.idat 13676216 IDAT NA 1367a200-2b5b-4762-9083-5e4991f4d326 katmai @@ -7816,7 +7555,6 @@ C3N-02585.MethArray.Red.A C3N-02585 PDA Methylation Array tissue_normal /diskmnt C3N-02585.MethArray.Red.T C3N-02585 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/631bd16f-d235-4fb9-b013-4b9b3e6e507a/203561620052_R01C01_Red.idat 13676211 IDAT NA 631bd16f-d235-4fb9-b013-4b9b3e6e507a katmai C3N-02585.miRNA-Seq.T C3N-02585 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/26cea4a4-0920-426c-a199-88970ad1f60b/190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L006_R1_001.unaln.bam 229896015 BAM NA 26cea4a4-0920-426c-a199-88970ad1f60b katmai C3N-02585.miRNA-Seq.T.hg38 C3N-02585 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5e829303-fb20-4579-84f5-c653fba64a6d/29419d59-fd49-4dd7-b953-1f8880cae940_mirnaseq_gdc_realn.bam 260606156 BAM hg38 5e829303-fb20-4579-84f5-c653fba64a6d katmai -C3N-02585.RNA-Seq.genomic.T.hg38 C3N-02585 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3e649cd7-4dbd-437c-a6a7-a5c7bdb647ea/28f742db-1e01-45b3-84c3-795345b89d57.rna_seq.genomic.gdc_realn.bam 10039813746 BAM hg38 3e649cd7-4dbd-437c-a6a7-a5c7bdb647ea katmai C3N-02586.MethArray.Green.A C3N-02586 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/656b474c-d5e5-44c4-95bc-123fc1f9c0df/203219640095_R01C01_Grn.idat 13676216 IDAT NA 656b474c-d5e5-44c4-95bc-123fc1f9c0df katmai C3N-02586.MethArray.Green.T C3N-02586 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1bf5a013-2dfc-4c5a-ae02-a6d492815265/203028200093_R07C01_Grn.idat 13676226 IDAT NA 1bf5a013-2dfc-4c5a-ae02-a6d492815265 katmai C3N-02586.MethArray.Red.A C3N-02586 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/de9d2e0e-b266-4c74-9ac1-0a305d9d25c0/203219640095_R01C01_Red.idat 13676216 IDAT NA de9d2e0e-b266-4c74-9ac1-0a305d9d25c0 katmai @@ -7849,14 +7587,10 @@ C3N-02589.miRNA-Seq.A C3N-02589 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-02589.miRNA-Seq.A.hg38 C3N-02589 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/8c95589e-d62a-4538-8420-183c8043c966/18ba3c36-065d-489b-b67f-19bcf52da9be_mirnaseq_gdc_realn.bam 283384872 BAM hg38 8c95589e-d62a-4538-8420-183c8043c966 katmai C3N-02589.miRNA-Seq.T C3N-02589 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7392f254-dfc8-49b5-8d51-28ad22fce2dc/190712_UNC32-K00270_0192_BH7HL3BBXY_GTAGAG_S40_L005_R1_001.unaln.bam 214692575 BAM NA 7392f254-dfc8-49b5-8d51-28ad22fce2dc katmai C3N-02589.miRNA-Seq.T.hg38 C3N-02589 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f13c3a88-cc3d-4195-9971-48ce3cf10a1e/75988f97-542f-410e-89d4-df85dad63b2d_mirnaseq_gdc_realn.bam 246832781 BAM hg38 f13c3a88-cc3d-4195-9971-48ce3cf10a1e katmai -C3N-02589.RNA-Seq.genomic.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/666f455a-c54e-4275-aad5-ae7d538830d7/9a8dd3f7-5cc5-415b-972c-19c9917444f8.rna_seq.genomic.gdc_realn.bam 10121533442 BAM hg38 666f455a-c54e-4275-aad5-ae7d538830d7 katmai -C3N-02589.RNA-Seq.genomic.T.hg38 C3N-02589 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/23f255ec-8c8e-4498-90e9-b11b6cc6a4f3/ad0e4da4-6e1e-4921-bc03-db1e1ee65461.rna_seq.genomic.gdc_realn.bam 8660824299 BAM hg38 23f255ec-8c8e-4498-90e9-b11b6cc6a4f3 katmai C3N-02590.MethArray.Green.T.CORE_J6NZQw9.core C3N-02590 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e88d2890-28b0-47b5-aaa0-6256ecc28953/203561450054_R03C01_Grn.idat 13676216 IDAT NA e88d2890-28b0-47b5-aaa0-6256ecc28953 katmai C3N-02590.MethArray.Red.T.CORE_J6NZQw9.core C3N-02590 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4280fa37-718d-463a-a423-bf2a0a2e2052/203561450054_R03C01_Red.idat 13676216 IDAT NA 4280fa37-718d-463a-a423-bf2a0a2e2052 katmai C3N-02590.miRNA-Seq.T C3N-02590 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4975d966-ffab-4a24-a2ea-e7f67761bde0/190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L002_R1_001.unaln.bam 225584374 BAM NA 4975d966-ffab-4a24-a2ea-e7f67761bde0 katmai C3N-02590.miRNA-Seq.T.hg38 C3N-02590 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e5ae3251-d1d6-4ca4-929f-f8bf263ab367/67b9fc7b-0477-494e-a59c-e3e905bb245a_mirnaseq_gdc_realn.bam 253829316 BAM hg38 e5ae3251-d1d6-4ca4-929f-f8bf263ab367 katmai -C3N-02590.RNA-Seq.genomic.T.hg38 C3N-02590 PDA RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/49785b65-2d8c-4671-8dc9-c4965231357c/80e3a050-17e6-404a-adec-7674760b03d2.rna_seq.genomic.gdc_realn.bam 12774966356 BAM hg38 49785b65-2d8c-4671-8dc9-c4965231357c katmai -C3N-02590.RNA-Seq.genomic.T.hg38 C3N-02590 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/49785b65-2d8c-4671-8dc9-c4965231357c/80e3a050-17e6-404a-adec-7674760b03d2.rna_seq.genomic.gdc_realn.bam 12774966356 BAM hg38 49785b65-2d8c-4671-8dc9-c4965231357c katmai C3N-02591.MethArray.Green.T.BULK_1xqWz3 C3N-02591 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7b9ccc62-9004-4c66-ae37-6c59f001ddad/203561450046_R01C01_Grn.idat 13676211 IDAT NA 7b9ccc62-9004-4c66-ae37-6c59f001ddad katmai C3N-02591.MethArray.Green.T.CORE_R2nOrL.core C3N-02591 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/89bbbd5e-8f2b-4a2d-99dd-4114715f6756/203561620080_R01C01_Grn.idat 13676226 IDAT NA 89bbbd5e-8f2b-4a2d-99dd-4114715f6756 katmai C3N-02591.MethArray.Red.T.BULK_1xqWz3 C3N-02591 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2ad2b5ba-1ec6-4399-ae61-5ebceca78583/203561450046_R01C01_Red.idat 13676211 IDAT NA 2ad2b5ba-1ec6-4399-ae61-5ebceca78583 katmai @@ -7865,7 +7599,6 @@ C3N-02592.MethArray.Green.T C3N-02592 PDA Methylation Array tumor /diskmnt/Proje C3N-02592.MethArray.Red.T C3N-02592 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5a769678-cc53-47bc-b14c-df7eccd9d3ba/203273630258_R01C01_Red.idat 13676231 IDAT NA 5a769678-cc53-47bc-b14c-df7eccd9d3ba katmai C3N-02592.miRNA-Seq.T C3N-02592 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/030a0ace-f36d-4996-84a7-d9bd06f12293/190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L006_R1_001.unaln.bam 240691968 BAM NA 030a0ace-f36d-4996-84a7-d9bd06f12293 katmai C3N-02592.miRNA-Seq.T.hg38 C3N-02592 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/32f7da4f-457f-439d-a8cf-940c96a30bb7/4670d6ec-b2f7-40d7-ae66-039ad794cc76_mirnaseq_gdc_realn.bam 264587731 BAM hg38 32f7da4f-457f-439d-a8cf-940c96a30bb7 katmai -C3N-02592.RNA-Seq.genomic.T.hg38 C3N-02592 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6b29a4d5-e927-4465-8bab-541fb7709852/0a2067a8-fa1b-402a-aaff-8b28cecee830.rna_seq.genomic.gdc_realn.bam 10566106858 BAM hg38 6b29a4d5-e927-4465-8bab-541fb7709852 katmai C3N-02594.RNA-Seq.genomic.T.BIOTEXT_QW61wB0.hg38 C3N-02594 PDA RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/648eaf3a-af96-422b-8f8e-4971205a5daa/d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.genomic.gdc_realn.bam 12694184597 BAM hg38 648eaf3a-af96-422b-8f8e-4971205a5daa katmai C3N-02595.MethArray.Green.T C3N-02595 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b2e81e85-ffe6-4909-83da-5ba3a3002766/203561450025_R06C01_Grn.idat 13676221 IDAT NA b2e81e85-ffe6-4909-83da-5ba3a3002766 katmai C3N-02595.MethArray.Red.T C3N-02595 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/967a558a-5b88-4239-aacb-c8b97f73bd44/203561450025_R06C01_Red.idat 13676221 IDAT NA 967a558a-5b88-4239-aacb-c8b97f73bd44 katmai @@ -7942,7 +7675,6 @@ C3N-02697.MethArray.Green.T C3N-02697 PDA Methylation Array tumor /diskmnt/Proje C3N-02697.MethArray.Red.T C3N-02697 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/12bfe7b1-a658-47c6-98f3-625f27ad343d/203561620153_R02C01_Red.idat 13676211 IDAT NA 12bfe7b1-a658-47c6-98f3-625f27ad343d katmai C3N-02697.miRNA-Seq.T C3N-02697 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e70a32ad-5c49-4800-8705-82ed3489cc87/190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L004_R1_001.unaln.bam 155578609 BAM NA e70a32ad-5c49-4800-8705-82ed3489cc87 katmai C3N-02697.miRNA-Seq.T.hg38 C3N-02697 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/dd991044-a44e-42d3-b3e1-b7f7aa9acf05/92678b1a-17a6-4e15-88ea-f2ebd3f1a705_mirnaseq_gdc_realn.bam 175218702 BAM hg38 dd991044-a44e-42d3-b3e1-b7f7aa9acf05 katmai -C3N-02697.RNA-Seq.genomic.T.hg38 C3N-02697 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f72aaf6f-5bc5-4863-b29e-b6b0f26ae2c8/c824d73e-8c29-435c-a547-ae8cd35b853b.rna_seq.genomic.gdc_realn.bam 9108640644 BAM hg38 f72aaf6f-5bc5-4863-b29e-b6b0f26ae2c8 katmai C3N-02700.MethArray.Green.T C3N-02700 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7378fbc8-e1ab-44b7-83ba-993598d67df5/203219650047_R01C01_Grn.idat 13676206 IDAT NA 7378fbc8-e1ab-44b7-83ba-993598d67df5 katmai C3N-02700.MethArray.Red.T C3N-02700 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4519e8e1-bc1b-4b71-848e-c7afe06593dd/203219650047_R01C01_Red.idat 13676206 IDAT NA 4519e8e1-bc1b-4b71-848e-c7afe06593dd katmai C3N-02700.miRNA-Seq.T C3N-02700 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9bea4471-5f0c-4ef5-b9a6-901d9b978cd2/190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L001_R1_001.unaln.bam 243249333 BAM NA 9bea4471-5f0c-4ef5-b9a6-901d9b978cd2 katmai @@ -8069,8 +7801,6 @@ C3N-02768.miRNA-Seq.A C3N-02768 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-02768.miRNA-Seq.A.hg38 C3N-02768 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/c481af8e-4d88-46df-92e8-c87a1c20cb01/3dafe0ca-6f6f-42c3-b9c1-ff9f1fde677f_mirnaseq_gdc_realn.bam 457957758 BAM hg38 c481af8e-4d88-46df-92e8-c87a1c20cb01 katmai C3N-02768.miRNA-Seq.T C3N-02768 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/19e39f9c-0520-4db9-9f62-bec8f7dd3e29/190712_UNC32-K00270_0192_BH7HL3BBXY_CACTCA_S8_L004_R1_001.unaln.bam 171567831 BAM NA 19e39f9c-0520-4db9-9f62-bec8f7dd3e29 katmai C3N-02768.miRNA-Seq.T.hg38 C3N-02768 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c369335b-8591-4181-9f67-b5a6951dc60d/79a919a6-53da-41e0-8030-b4945f1a8143_mirnaseq_gdc_realn.bam 195297723 BAM hg38 c369335b-8591-4181-9f67-b5a6951dc60d katmai -C3N-02768.RNA-Seq.genomic.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/34d73f70-ac8d-431f-9e1b-bb46e453876e/18c9dbc8-786e-4eb9-8078-57b216961468.rna_seq.genomic.gdc_realn.bam 10140818325 BAM hg38 34d73f70-ac8d-431f-9e1b-bb46e453876e katmai -C3N-02768.RNA-Seq.genomic.T.hg38 C3N-02768 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/98ffbfed-757f-43c4-b7a0-65b86ee2efa6/4b7eacf2-3056-4ea7-a0e0-75125d3d2f18.rna_seq.genomic.gdc_realn.bam 8513440830 BAM hg38 98ffbfed-757f-43c4-b7a0-65b86ee2efa6 katmai C3N-02769.MethArray.Green.T C3N-02769 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/626dd0ca-d04d-4927-8a5b-951b146762e4/203219650005_R02C01_Grn.idat 13676226 IDAT NA 626dd0ca-d04d-4927-8a5b-951b146762e4 katmai C3N-02769.MethArray.Red.T C3N-02769 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1bc0a9f6-29f0-4999-a4b8-8e944f14bf72/203219650005_R02C01_Red.idat 13676226 IDAT NA 1bc0a9f6-29f0-4999-a4b8-8e944f14bf72 katmai C3N-02769.miRNA-Seq.T C3N-02769 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c09925f2-998c-4ff4-a6dd-c00c71cdf053/181219_UNC31-K00269_0173_BHYGJJBBXX_CGTACG_S48_L003_R1_001.unaln.bam 254035039 BAM NA c09925f2-998c-4ff4-a6dd-c00c71cdf053 katmai @@ -8208,19 +7938,16 @@ C3N-02939.MethArray.Red.A C3N-02939 PDA Methylation Array tissue_normal /diskmnt C3N-02939.MethArray.Red.T C3N-02939 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9fe6f13e-a2b2-4ee9-a630-51adc6429ead/203561450008_R01C01_Red.idat 13676236 IDAT NA 9fe6f13e-a2b2-4ee9-a630-51adc6429ead katmai C3N-02939.miRNA-Seq.T C3N-02939 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/66779b53-72de-4036-8975-d4c1c9a27edb/190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L004_R1_001.unaln.bam 137446607 BAM NA 66779b53-72de-4036-8975-d4c1c9a27edb katmai C3N-02939.miRNA-Seq.T.hg38 C3N-02939 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/e884c325-e6e6-4dab-9f94-ee597aac12b6/21cc21ff-e338-49c4-871e-60088108aad4_mirnaseq_gdc_realn.bam 156064989 BAM hg38 e884c325-e6e6-4dab-9f94-ee597aac12b6 katmai -C3N-02939.RNA-Seq.genomic.T.hg38 C3N-02939 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b2be5524-0785-48f4-a9d4-2a335e616a6d/4c71025e-e2dc-4c32-b97f-24e33f09fcf0.rna_seq.genomic.gdc_realn.bam 8343601462 BAM hg38 b2be5524-0785-48f4-a9d4-2a335e616a6d katmai C3N-02940.MethArray.Green.T C3N-02940 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d0c3c995-f9c6-40aa-a4a1-0c282556ae3d/203561620159_R01C01_Grn.idat 13676216 IDAT NA d0c3c995-f9c6-40aa-a4a1-0c282556ae3d katmai C3N-02940.MethArray.Red.T C3N-02940 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/eb4df7b6-cb87-4bc7-82b7-3bce44e42b0d/203561620159_R01C01_Red.idat 13676216 IDAT NA eb4df7b6-cb87-4bc7-82b7-3bce44e42b0d katmai C3N-02940.miRNA-Seq.T C3N-02940 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ed9e8e30-267d-4701-b546-3d32dd07d4b5/190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L004_R1_001.unaln.bam 217144472 BAM NA ed9e8e30-267d-4701-b546-3d32dd07d4b5 katmai C3N-02940.miRNA-Seq.T.hg38 C3N-02940 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4934fc92-aaf2-4f2e-8040-0b258029e7b4/ab5cec90-101d-4298-b3a9-b9b262166e74_mirnaseq_gdc_realn.bam 243116604 BAM hg38 4934fc92-aaf2-4f2e-8040-0b258029e7b4 katmai -C3N-02940.RNA-Seq.genomic.T.hg38 C3N-02940 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f355325d-33be-4308-a234-a8715732df53/c8b945ef-970c-4dcc-a817-313d307a2db7.rna_seq.genomic.gdc_realn.bam 8920792873 BAM hg38 f355325d-33be-4308-a234-a8715732df53 katmai C3N-02944.MethArray.Green.A C3N-02944 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e957685e-5a25-44a4-b1d5-cd556cc7f517/203561450084_R07C01_Grn.idat 13676216 IDAT NA e957685e-5a25-44a4-b1d5-cd556cc7f517 katmai C3N-02944.MethArray.Green.T C3N-02944 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/12ecc1ea-a74f-4e7e-90a2-06347d475ebd/203561620008_R07C01_Grn.idat 13676236 IDAT NA 12ecc1ea-a74f-4e7e-90a2-06347d475ebd katmai C3N-02944.MethArray.Red.A C3N-02944 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/945b3794-144f-4695-ac5c-2eb689e40fa7/203561450084_R07C01_Red.idat 13676216 IDAT NA 945b3794-144f-4695-ac5c-2eb689e40fa7 katmai C3N-02944.MethArray.Red.T C3N-02944 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6a544504-3d0f-4316-805b-00a9694fa5d5/203561620008_R07C01_Red.idat 13676236 IDAT NA 6a544504-3d0f-4316-805b-00a9694fa5d5 katmai C3N-02944.miRNA-Seq.T C3N-02944 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ab6865fe-00b0-4589-b19b-9afada7ce28f/190813_UNC32-K00270_0196_AH5MCWBBXY_CAACTA_S14_L003_R1_001.unaln.bam 272027155 BAM NA ab6865fe-00b0-4589-b19b-9afada7ce28f katmai C3N-02944.miRNA-Seq.T.hg38 C3N-02944 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0afc362c-0c67-4c09-8ea3-9919101c5b6e/98aa57dc-0f8f-4ce8-97db-bccef77dad07_mirnaseq_gdc_realn.bam 309680936 BAM hg38 0afc362c-0c67-4c09-8ea3-9919101c5b6e katmai -C3N-02944.RNA-Seq.genomic.T.hg38 C3N-02944 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/007aa2f6-3884-490a-9db8-a542590db7ca/8cce487a-1085-4a47-9152-83aa137381e4.rna_seq.genomic.gdc_realn.bam 7925010606 BAM hg38 007aa2f6-3884-490a-9db8-a542590db7ca katmai C3N-02945.MethArray.Green.T C3N-02945 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/05b55a47-6471-48b9-a42a-e8ff5d46b5ff/203219670066_R08C01_Grn.idat 13676226 IDAT NA 05b55a47-6471-48b9-a42a-e8ff5d46b5ff katmai C3N-02945.MethArray.Red.T C3N-02945 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/eef52275-3c50-4a10-b221-f4ad83c41397/203219670066_R08C01_Red.idat 13676226 IDAT NA eef52275-3c50-4a10-b221-f4ad83c41397 katmai C3N-02945.miRNA-Seq.A C3N-02945 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/974eea39-f759-4b7a-80d7-5d329d5884d6/190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L002_R1_001.unaln.bam 209885005 BAM NA 974eea39-f759-4b7a-80d7-5d329d5884d6 katmai @@ -8245,7 +7972,6 @@ C3N-02971.MethArray.Green.T C3N-02971 PDA Methylation Array tumor /diskmnt/Proje C3N-02971.MethArray.Red.T C3N-02971 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6dbc4cfe-f363-4215-84ee-9d4489ae7b55/203561450103_R01C01_Red.idat 13676216 IDAT NA 6dbc4cfe-f363-4215-84ee-9d4489ae7b55 katmai C3N-02971.miRNA-Seq.T C3N-02971 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4540adf0-2dbc-479a-84a9-d6bee606b0f7/190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L006_R1_001.unaln.bam 217059740 BAM NA 4540adf0-2dbc-479a-84a9-d6bee606b0f7 katmai C3N-02971.miRNA-Seq.T.hg38 C3N-02971 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d94e3bcb-f12d-4b67-b6fd-04765d5c0ef7/1712f055-afd7-4a31-bdce-6ea9b55c36a3_mirnaseq_gdc_realn.bam 242812683 BAM hg38 d94e3bcb-f12d-4b67-b6fd-04765d5c0ef7 katmai -C3N-02971.RNA-Seq.genomic.T.hg38 C3N-02971 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7fc94620-9690-4ed2-8ca9-cdb5c92727ba/44d7088e-6e6b-41fb-978a-52450111163d.rna_seq.genomic.gdc_realn.bam 10626581408 BAM hg38 7fc94620-9690-4ed2-8ca9-cdb5c92727ba katmai C3N-02972.MethArray.Green.T C3N-02972 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8b91a199-948f-4a7b-8b3f-63ddeee0af6c/203561450103_R02C01_Grn.idat 13676216 IDAT NA 8b91a199-948f-4a7b-8b3f-63ddeee0af6c katmai C3N-02972.MethArray.Red.T C3N-02972 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b12d4fb2-a33a-4d60-bac2-e01a6320a06a/203561450103_R02C01_Red.idat 13676216 IDAT NA b12d4fb2-a33a-4d60-bac2-e01a6320a06a katmai C3N-02972.miRNA-Seq.T C3N-02972 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6cd96684-43e2-4ca2-be89-763fa9e955a6/190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L001_R1_001.unaln.bam 251959666 BAM NA 6cd96684-43e2-4ca2-be89-763fa9e955a6 katmai @@ -8273,16 +7999,12 @@ C3N-02997.MethArray.Green.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tu C3N-02997.MethArray.Red.T.CORE_M8JZn2A.core C3N-02997 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4e98b347-eed9-4724-8824-d32228a344f2/203561450023_R03C01_Red.idat 13676221 IDAT NA 4e98b347-eed9-4724-8824-d32228a344f2 katmai C3N-02997.miRNA-Seq.T C3N-02997 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5fb3c51f-52b9-41eb-b307-2369ec7c2914/190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM NA 5fb3c51f-52b9-41eb-b307-2369ec7c2914 katmai C3N-02997.miRNA-Seq.T.hg38 C3N-02997 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/80dbe77f-da51-46d5-b822-183291d01611/1eeedacb-6e4e-47fd-a701-7a753afdf83f_mirnaseq_gdc_realn.bam 211693903 BAM hg38 80dbe77f-da51-46d5-b822-183291d01611 katmai -C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/d915f15b-1710-4f9d-9a5e-5e818f0dae04/06302bba-022f-41a2-8011-8192560a185e.rna_seq.genomic.gdc_realn.bam 11075594293 BAM hg38 d915f15b-1710-4f9d-9a5e-5e818f0dae04 katmai -C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d915f15b-1710-4f9d-9a5e-5e818f0dae04/06302bba-022f-41a2-8011-8192560a185e.rna_seq.genomic.gdc_realn.bam 11075594293 BAM hg38 d915f15b-1710-4f9d-9a5e-5e818f0dae04 katmai C3N-02998.MethArray.Green.T C3N-02998 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a5983d0a-bf2a-40b1-94ec-790fc181ebb1/203561620077_R01C01_Grn.idat 13676214 IDAT NA a5983d0a-bf2a-40b1-94ec-790fc181ebb1 katmai C3N-02998.MethArray.Red.T C3N-02998 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1f0628ad-2055-4073-9466-e8e1fdde2588/203561620077_R01C01_Red.idat 13676214 IDAT NA 1f0628ad-2055-4073-9466-e8e1fdde2588 katmai C3N-02998.miRNA-Seq.T C3N-02998 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4a74c685-8a11-4a7c-ba1e-084219741373/190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L007_R1_001.unaln.bam 193665924 BAM NA 4a74c685-8a11-4a7c-ba1e-084219741373 katmai C3N-02998.miRNA-Seq.T.hg38 C3N-02998 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d0e5abbc-3db2-495b-ba33-033245459c2b/4b55f44e-bf95-4359-854d-0e0fdf888c83_mirnaseq_gdc_realn.bam 212664658 BAM hg38 d0e5abbc-3db2-495b-ba33-033245459c2b katmai -C3N-02998.RNA-Seq.genomic.T.hg38 C3N-02998 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/13940d88-d226-400d-926c-7061fc693fa5/ca6de6d1-b541-41f7-8b04-3b6355be065e.rna_seq.genomic.gdc_realn.bam 8123086431 BAM hg38 13940d88-d226-400d-926c-7061fc693fa5 katmai C3N-03000.miRNA-Seq.T C3N-03000 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/89fca0d1-10af-4ec3-bb4e-5905fb9b0ded/190712_UNC32-K00270_0192_BH7HL3BBXY_CTCAGA_S16_L004_R1_001.unaln.bam 194981114 BAM NA 89fca0d1-10af-4ec3-bb4e-5905fb9b0ded katmai C3N-03000.miRNA-Seq.T.hg38 C3N-03000 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/275da72e-dfa7-4a39-aec6-ff40785022d2/7272726f-32f1-4225-ae3c-73c022a8b785_mirnaseq_gdc_realn.bam 222829273 BAM hg38 275da72e-dfa7-4a39-aec6-ff40785022d2 katmai -C3N-03000.RNA-Seq.genomic.T.hg38 C3N-03000 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1db1bf5b-653c-48fc-ac41-0eb4b8606fea/a3ec4717-b14a-4036-b0db-add6f19d5499.rna_seq.genomic.gdc_realn.bam 8415937790 BAM hg38 1db1bf5b-653c-48fc-ac41-0eb4b8606fea katmai C3N-03001.MethArray.Green.T C3N-03001 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/5f7be741-0480-4521-87ed-f519c24745b9/204367470132_R02C01_Grn.idat 13677880 IDAT NA 5f7be741-0480-4521-87ed-f519c24745b9 katmai C3N-03001.MethArray.Red.T C3N-03001 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/adc9401c-f592-47de-a534-3ca99f3cf183/204367470132_R02C01_Red.idat 13677880 IDAT NA adc9401c-f592-47de-a534-3ca99f3cf183 katmai C3N-03001.miRNA-Seq.T.hg38 C3N-03001 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/24b0e422-f608-4908-a1e5-161e44cb2cad/f01b3ee3-eb0d-4faf-9431-51078e0bde67_mirnaseq_gdc_realn.bam 246572830 BAM hg38 24b0e422-f608-4908-a1e5-161e44cb2cad katmai @@ -8298,12 +8020,10 @@ C3N-03006.MethArray.Green.T C3N-03006 PDA Methylation Array tumor /diskmnt/Proje C3N-03006.MethArray.Red.T C3N-03006 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7f4e4a5c-99b6-4512-908c-cb80dc3cbee5/203561450062_R06C01_Red.idat 13676217 IDAT NA 7f4e4a5c-99b6-4512-908c-cb80dc3cbee5 katmai C3N-03006.miRNA-Seq.T C3N-03006 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6cd86076-8d56-4f74-a976-46b4d87a4717/190813_UNC32-K00270_0196_AH5MCWBBXY_CATGGC_S19_L003_R1_001.unaln.bam 311672891 BAM NA 6cd86076-8d56-4f74-a976-46b4d87a4717 katmai C3N-03006.miRNA-Seq.T.hg38 C3N-03006 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/60767f56-bed7-4a8d-b937-491775cc9583/89365744-3b9c-471d-b923-46814e31ff2a_mirnaseq_gdc_realn.bam 353629087 BAM hg38 60767f56-bed7-4a8d-b937-491775cc9583 katmai -C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6a388878-e3c0-4a28-86c3-b990cedd03ee/5ba34fb7-e0ef-4577-92e5-69487d35a5ee.rna_seq.genomic.gdc_realn.bam 9529670763 BAM hg38 6a388878-e3c0-4a28-86c3-b990cedd03ee katmai C3N-03007.MethArray.Green.T C3N-03007 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/481fc97f-42a5-449c-9955-fc42cc4fa701/203561450048_R08C01_Grn.idat 13676221 IDAT NA 481fc97f-42a5-449c-9955-fc42cc4fa701 katmai C3N-03007.MethArray.Red.T C3N-03007 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7483daa9-c1b1-4295-8211-fadfaf1f529c/203561450048_R08C01_Red.idat 13676221 IDAT NA 7483daa9-c1b1-4295-8211-fadfaf1f529c katmai C3N-03007.miRNA-Seq.T C3N-03007 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5c651f4a-468a-4a8f-bbcf-8f2420b371fe/190813_UNC32-K00270_0196_AH5MCWBBXY_CAAAAG_S13_L003_R1_001.unaln.bam 278175739 BAM NA 5c651f4a-468a-4a8f-bbcf-8f2420b371fe katmai C3N-03007.miRNA-Seq.T.hg38 C3N-03007 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/136bfbc4-ef3f-4010-b8ca-1ddeaa1fad7d/af81d130-156c-49b8-9f30-a388d635207e_mirnaseq_gdc_realn.bam 310069264 BAM hg38 136bfbc4-ef3f-4010-b8ca-1ddeaa1fad7d katmai -C3N-03007.RNA-Seq.genomic.T.hg38 C3N-03007 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4d5ffe91-b901-46fc-87ca-9e6d230544d6/31d75797-d277-4639-8246-fd72b2e43e0d.rna_seq.genomic.gdc_realn.bam 7526552061 BAM hg38 4d5ffe91-b901-46fc-87ca-9e6d230544d6 katmai C3N-03008.MethArray.Green.T C3N-03008 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/00097212-12fe-4c8b-b79e-45eef5768d5b/203219640047_R03C01_Grn.idat 13676206 IDAT NA 00097212-12fe-4c8b-b79e-45eef5768d5b katmai C3N-03008.MethArray.Red.T C3N-03008 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/51af3f70-d83e-4760-bb4a-20f1462a265d/203219640047_R03C01_Red.idat 13676206 IDAT NA 51af3f70-d83e-4760-bb4a-20f1462a265d katmai C3N-03008.miRNA-Seq.T C3N-03008 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/54d0c9ee-c935-4690-8217-3d2014d8e5dc/190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L005_R1_001.unaln.bam 236954204 BAM NA 54d0c9ee-c935-4690-8217-3d2014d8e5dc katmai @@ -8389,7 +8109,6 @@ C3N-03039.MethArray.Red.A C3N-03039 PDA Methylation Array tissue_normal /diskmnt C3N-03039.MethArray.Red.T C3N-03039 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1dbd6040-6bd5-4cb1-bfce-4d1de45827d1/203561620089_R02C01_Red.idat 13676236 IDAT NA 1dbd6040-6bd5-4cb1-bfce-4d1de45827d1 katmai C3N-03039.miRNA-Seq.T C3N-03039 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c6b4737b-c848-47cb-b910-b1076a451b02/190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L006_R1_001.unaln.bam 225601190 BAM NA c6b4737b-c848-47cb-b910-b1076a451b02 katmai C3N-03039.miRNA-Seq.T.hg38 C3N-03039 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/64fe912c-8559-472c-9319-2a13026bb38a/37cfa510-f15c-4ca1-945c-d28a08135833_mirnaseq_gdc_realn.bam 254273453 BAM hg38 64fe912c-8559-472c-9319-2a13026bb38a katmai -C3N-03039.RNA-Seq.genomic.T.hg38 C3N-03039 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d8118601-b2df-4f46-be4d-b842191e25a8/ac2f73d9-a993-4b3f-8d55-847c660bc0b3.rna_seq.genomic.gdc_realn.bam 7450950212 BAM hg38 d8118601-b2df-4f46-be4d-b842191e25a8 katmai C3N-03042.MethArray.Green.T C3N-03042 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ae42d9c0-82d1-4eac-bf02-ce869fb0aeaf/203281980233_R05C01_Grn.idat 13676211 IDAT NA ae42d9c0-82d1-4eac-bf02-ce869fb0aeaf katmai C3N-03042.MethArray.Red.T C3N-03042 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4d70e3b4-182e-460c-ab2f-703a73a6c0f6/203281980233_R05C01_Red.idat 13676211 IDAT NA 4d70e3b4-182e-460c-ab2f-703a73a6c0f6 katmai C3N-03042.miRNA-Seq.T C3N-03042 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/84ee3fac-ff68-447c-9154-bdf1fa5925c6/190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L004_R1_001.unaln.bam 198811768 BAM NA 84ee3fac-ff68-447c-9154-bdf1fa5925c6 katmai @@ -8426,7 +8145,6 @@ C3N-03061.MethArray.Green.T C3N-03061 PDA Methylation Array tumor /diskmnt/Proje C3N-03061.MethArray.Red.T C3N-03061 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/06a1ed36-2c0e-4b9c-ab7b-05a4065b6816/203561620095_R06C01_Red.idat 13676216 IDAT NA 06a1ed36-2c0e-4b9c-ab7b-05a4065b6816 katmai C3N-03061.miRNA-Seq.T C3N-03061 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5834b137-aefe-4645-a0e8-8fbf192b428b/190813_UNC32-K00270_0196_AH5MCWBBXY_CACCGG_S15_L003_R1_001.unaln.bam 265404178 BAM NA 5834b137-aefe-4645-a0e8-8fbf192b428b katmai C3N-03061.miRNA-Seq.T.hg38 C3N-03061 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/15730021-257b-4556-a6c9-571aea8709a2/3df01264-380e-438a-819b-776cc5352a71_mirnaseq_gdc_realn.bam 296386745 BAM hg38 15730021-257b-4556-a6c9-571aea8709a2 katmai -C3N-03061.RNA-Seq.genomic.T.hg38 C3N-03061 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ef813116-5a26-4bd4-b187-5010c9e23aae/1dc1d200-89d6-4edf-ae9e-1f6ce9d27e9c.rna_seq.genomic.gdc_realn.bam 8823319529 BAM hg38 ef813116-5a26-4bd4-b187-5010c9e23aae katmai C3N-03063.MethArray.Green.A C3N-03063 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/741411fd-a0e5-4bd8-8ce6-b0a85e5416be/203561450025_R03C01_Grn.idat 13676221 IDAT NA 741411fd-a0e5-4bd8-8ce6-b0a85e5416be katmai C3N-03063.MethArray.Green.T C3N-03063 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6ec235b1-7c31-4389-a305-56494ce8efb9/203561450099_R05C01_Grn.idat 13676216 IDAT NA 6ec235b1-7c31-4389-a305-56494ce8efb9 katmai C3N-03063.MethArray.Red.A C3N-03063 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1ad7c222-4dd7-47e2-af51-1a9ca431cb36/203561450025_R03C01_Red.idat 13676221 IDAT NA 1ad7c222-4dd7-47e2-af51-1a9ca431cb36 katmai @@ -8439,8 +8157,6 @@ C3N-03069.miRNA-Seq.A C3N-03069 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-03069.miRNA-Seq.A.hg38 C3N-03069 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/8128404e-e360-413e-9f65-94b3075b9d96/06fe4c40-1194-445e-9147-bebb2f9e757b_mirnaseq_gdc_realn.bam 222680705 BAM hg38 8128404e-e360-413e-9f65-94b3075b9d96 katmai C3N-03069.miRNA-Seq.T C3N-03069 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b6572e73-5fd1-418f-867f-9a8035a3085e/190712_UNC32-K00270_0192_BH7HL3BBXY_CACCGG_S6_L004_R1_001.unaln.bam 188644700 BAM NA b6572e73-5fd1-418f-867f-9a8035a3085e katmai C3N-03069.miRNA-Seq.T.hg38 C3N-03069 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/faa62ea7-b86c-4fea-8612-653486806a1e/79cfcd8f-1f31-4e76-a801-3d13c9b4b4ed_mirnaseq_gdc_realn.bam 221535698 BAM hg38 faa62ea7-b86c-4fea-8612-653486806a1e katmai -C3N-03069.RNA-Seq.genomic.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/746e2831-9ff1-4c5b-b283-40da44698506/97b0033c-f956-4e9b-90a9-4e009e2fb3c2.rna_seq.genomic.gdc_realn.bam 8408796070 BAM hg38 746e2831-9ff1-4c5b-b283-40da44698506 katmai -C3N-03069.RNA-Seq.genomic.T.hg38 C3N-03069 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/31ebc1dd-60a0-4433-ac3a-8f07bd67054f/64afb85d-f55f-4b94-91c2-bafe60ad2317.rna_seq.genomic.gdc_realn.bam 7172134341 BAM hg38 31ebc1dd-60a0-4433-ac3a-8f07bd67054f katmai C3N-03070.MethArray.Green.T C3N-03070 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3cf4fce8-2757-47ba-b17b-bc34d8f25f6a/203219650157_R03C01_Grn.idat 13676224 IDAT NA 3cf4fce8-2757-47ba-b17b-bc34d8f25f6a katmai C3N-03070.MethArray.Red.T C3N-03070 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/13f994e1-3fcb-4a74-bc48-89f038d9741f/203219650157_R03C01_Red.idat 13676224 IDAT NA 13f994e1-3fcb-4a74-bc48-89f038d9741f katmai C3N-03070.miRNA-Seq.T C3N-03070 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/844fcaef-1192-4374-b269-79a0978dbf50/190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L008_R1_001.unaln.bam 223702156 BAM NA 844fcaef-1192-4374-b269-79a0978dbf50 katmai @@ -8482,7 +8198,6 @@ C3N-03086.MethArray.Red.A C3N-03086 PDA Methylation Array tissue_normal /diskmnt C3N-03086.MethArray.Red.T C3N-03086 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3e1978d4-9207-4f9b-b4c5-c61add6283f6/203561620008_R04C01_Red.idat 13676236 IDAT NA 3e1978d4-9207-4f9b-b4c5-c61add6283f6 katmai C3N-03086.miRNA-Seq.T C3N-03086 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8976eca8-a185-4a17-b96a-fd06a0c4279a/190828_UNC32-K00270_0200_BH7GVJBBXY_CAGGCG_S170_L007_R1_001.unaln.bam 173825437 BAM NA 8976eca8-a185-4a17-b96a-fd06a0c4279a katmai C3N-03086.miRNA-Seq.T.hg38 C3N-03086 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f3d73cc1-ac98-4a4a-8958-4c41feac147c/dc12593f-588d-48c9-a871-409bfd080502_mirnaseq_gdc_realn.bam 199187558 BAM hg38 f3d73cc1-ac98-4a4a-8958-4c41feac147c katmai -C3N-03086.RNA-Seq.genomic.T.hg38 C3N-03086 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/91bf833d-8116-4b7b-a063-0da874e1f4d7/bee3d7bf-ab95-44c8-ae16-a46a664e5f69.rna_seq.genomic.gdc_realn.bam 7699865467 BAM hg38 91bf833d-8116-4b7b-a063-0da874e1f4d7 katmai C3N-03088.MethArray.Green.T C3N-03088 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/135a44b7-5f82-461e-b11e-8c1c4d4c0f73/203219720211_R01C01_Grn.idat 13676246 IDAT NA 135a44b7-5f82-461e-b11e-8c1c4d4c0f73 katmai C3N-03088.MethArray.Red.T C3N-03088 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8131057b-682b-42fd-a81e-5e6f9337ca92/203219720211_R01C01_Red.idat 13676246 IDAT NA 8131057b-682b-42fd-a81e-5e6f9337ca92 katmai C3N-03088.miRNA-Seq.T C3N-03088 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/449f2617-ed59-40d4-9091-6d3d52f30ebe/190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L008_R1_001.unaln.bam 215618509 BAM NA 449f2617-ed59-40d4-9091-6d3d52f30ebe katmai @@ -8511,8 +8226,6 @@ C3N-03173.miRNA-Seq.A C3N-03173 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-03173.miRNA-Seq.A.hg38 C3N-03173 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/47c614f2-1003-4704-a6af-a2a0bc07e949/554dc1b3-932d-401b-81ae-a41ff31480ad_mirnaseq_gdc_realn.bam 539609848 BAM hg38 47c614f2-1003-4704-a6af-a2a0bc07e949 katmai C3N-03173.miRNA-Seq.T C3N-03173 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/25d7020e-cab3-41b2-9804-f49b028615f8/190813_UNC32-K00270_0196_AH5MCWBBXY_ATTCCT_S12_L003_R1_001.unaln.bam 214237806 BAM NA 25d7020e-cab3-41b2-9804-f49b028615f8 katmai C3N-03173.miRNA-Seq.T.hg38 C3N-03173 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/4962433c-8282-418d-a7b7-9b8030e67397/68f10894-282e-4a7f-b33d-a090c9441f08_mirnaseq_gdc_realn.bam 244402869 BAM hg38 4962433c-8282-418d-a7b7-9b8030e67397 katmai -C3N-03173.RNA-Seq.genomic.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/76426ac0-bd81-434e-888f-977183463080/c722819e-b444-4681-997d-b35a3999e85c.rna_seq.genomic.gdc_realn.bam 7141432755 BAM hg38 76426ac0-bd81-434e-888f-977183463080 katmai -C3N-03173.RNA-Seq.genomic.T.hg38 C3N-03173 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fd181591-5618-4149-a871-1a666fdeadf8/d23d21ff-cf41-4603-b2b1-81398d6cc07b.rna_seq.genomic.gdc_realn.bam 9052996549 BAM hg38 fd181591-5618-4149-a871-1a666fdeadf8 katmai C3N-03180.miRNA-Seq.T C3N-03180 GBM miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/183a90a4-4aba-4093-9b8c-6d86a2531b8c/181219_UNC31-K00269_0173_BHYGJJBBXX_ATTCCT_S26_L004_R1_001.unaln.bam 223446234 BAM NA 183a90a4-4aba-4093-9b8c-6d86a2531b8c katmai C3N-03180.miRNA-Seq.T.hg38 C3N-03180 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a9069373-e397-4664-ac66-483b6fddcd57/0ab9fc8a-85de-4243-aa5b-818673c699b2_mirnaseq_gdc_realn.bam 246204106 BAM hg38 a9069373-e397-4664-ac66-483b6fddcd57 katmai C3N-03180.RNA-Seq.genomic.T.hg38 C3N-03180 GBM RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e75ca928-6f4d-46b7-ac05-21447e355e4b/1b1f29e4-b1f6-4eac-95e3-680153f1edbe.rna_seq.genomic.gdc_realn.bam 7594246047 BAM hg38 e75ca928-6f4d-46b7-ac05-21447e355e4b katmai @@ -8551,7 +8264,6 @@ C3N-03190.MethArray.Green.T C3N-03190 PDA Methylation Array tumor /diskmnt/Proje C3N-03190.MethArray.Red.T C3N-03190 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c64a0849-a91d-4ec0-bfb4-849a449fa966/203561620012_R02C01_Red.idat 13676211 IDAT NA c64a0849-a91d-4ec0-bfb4-849a449fa966 katmai C3N-03190.miRNA-Seq.T C3N-03190 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8b60b59b-8718-4e7f-9834-3ced073cc7b1/190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L004_R1_001.unaln.bam 192681943 BAM NA 8b60b59b-8718-4e7f-9834-3ced073cc7b1 katmai C3N-03190.miRNA-Seq.T.hg38 C3N-03190 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/204b0607-bff2-413d-8541-02f7e55fbbff/1dc57242-3126-4af2-90e6-b033762c408a_mirnaseq_gdc_realn.bam 218002181 BAM hg38 204b0607-bff2-413d-8541-02f7e55fbbff katmai -C3N-03190.RNA-Seq.genomic.T.hg38 C3N-03190 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/55b55adf-7d61-4e05-ada2-f0ec5b998e81/21738fef-075e-40b7-9347-0801385ec670.rna_seq.genomic.gdc_realn.bam 10161639998 BAM hg38 55b55adf-7d61-4e05-ada2-f0ec5b998e81 katmai C3N-03202.MethArray.Green.A C3N-03202 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e7ed76c4-64a3-4bee-9b07-30834d167dcf/203561620040_R02C01_Grn.idat 13676211 IDAT NA e7ed76c4-64a3-4bee-9b07-30834d167dcf katmai C3N-03202.MethArray.Green.T C3N-03202 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/54ff8e1e-dff6-484b-b1c7-f7b56e176b47/203561620064_R05C01_Grn.idat 13676211 IDAT NA 54ff8e1e-dff6-484b-b1c7-f7b56e176b47 katmai C3N-03202.MethArray.Red.A C3N-03202 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7ffb5561-e84a-40ca-aac5-db68a3e9bec9/203561620040_R02C01_Red.idat 13676211 IDAT NA 7ffb5561-e84a-40ca-aac5-db68a3e9bec9 katmai @@ -8586,7 +8298,6 @@ C3N-03211.MethArray.Red.A C3N-03211 PDA Methylation Array tissue_normal /diskmnt C3N-03211.MethArray.Red.T C3N-03211 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ab6f327f-d9e5-456d-b7a9-91a4ef6bafc7/203561450073_R01C01_Red.idat 13676221 IDAT NA ab6f327f-d9e5-456d-b7a9-91a4ef6bafc7 katmai C3N-03211.miRNA-Seq.T C3N-03211 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2dc8da72-4ee2-43ac-b0fd-d32210479b31/190813_UNC32-K00270_0196_AH5MCWBBXY_ATCACG_S30_L004_R1_001.unaln.bam 174449374 BAM NA 2dc8da72-4ee2-43ac-b0fd-d32210479b31 katmai C3N-03211.miRNA-Seq.T.hg38 C3N-03211 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3f5d769b-652c-464d-b488-95ae2b69227c/3be3f8d3-4a87-4406-8b32-342ac6aa234a_mirnaseq_gdc_realn.bam 202061520 BAM hg38 3f5d769b-652c-464d-b488-95ae2b69227c katmai -C3N-03211.RNA-Seq.genomic.T.hg38 C3N-03211 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d0e368f4-3665-417d-9461-2ccb85eb8950/9a6cbaf8-2fd7-4bb2-b078-3c2bb5b7ff33.rna_seq.genomic.gdc_realn.bam 11865612418 BAM hg38 d0e368f4-3665-417d-9461-2ccb85eb8950 katmai C3N-03212.MethArray.Green.T C3N-03212 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bc771166-a79d-4ccf-aaea-5a68cea9d3c4/203219650065_R08C01_Grn.idat 13676226 IDAT NA bc771166-a79d-4ccf-aaea-5a68cea9d3c4 katmai C3N-03212.MethArray.Red.T C3N-03212 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/daadd5f5-af27-48ad-be24-8fd28583de05/203219650065_R08C01_Red.idat 13676226 IDAT NA daadd5f5-af27-48ad-be24-8fd28583de05 katmai C3N-03212.miRNA-Seq.A C3N-03212 LUAD miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9820e112-5fe5-41bc-afb5-3d51901006e4/190130_UNC31-K00269_0188_BH2FGCBBXY_CAGATC_S8_L006_R1_001.unaln.bam 240170281 BAM NA 9820e112-5fe5-41bc-afb5-3d51901006e4 katmai @@ -8668,17 +8379,14 @@ C3N-03426.MethArray.Green.T C3N-03426 PDA Methylation Array tumor /diskmnt/Proje C3N-03426.MethArray.Red.T C3N-03426 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a1a5c53e-1130-468b-b053-07148633b996/203561450106_R01C01_Red.idat 13676216 IDAT NA a1a5c53e-1130-468b-b053-07148633b996 katmai C3N-03426.miRNA-Seq.T C3N-03426 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9af93e9c-37e2-47a8-9fec-0223d659a78c/190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L004_R1_001.unaln.bam 327467507 BAM NA 9af93e9c-37e2-47a8-9fec-0223d659a78c katmai C3N-03426.miRNA-Seq.T.hg38 C3N-03426 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/de921739-5ea5-43a2-8bad-f02b12cd5306/b38c77d7-c235-44cf-925b-b86e74077cae_mirnaseq_gdc_realn.bam 381428449 BAM hg38 de921739-5ea5-43a2-8bad-f02b12cd5306 katmai -C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/08b74ff4-9e65-4e99-b480-c85d929f9ee8/8930739b-4381-48ee-aaad-1229ea213c09.rna_seq.genomic.gdc_realn.bam 7908867436 BAM hg38 08b74ff4-9e65-4e99-b480-c85d929f9ee8 katmai C3N-03428.MethArray.Green.T C3N-03428 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/65cdff2e-08d6-475a-9b24-9d775a4784dc/203561620043_R01C01_Grn.idat 13676212 IDAT NA 65cdff2e-08d6-475a-9b24-9d775a4784dc katmai C3N-03428.MethArray.Red.T C3N-03428 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ab6719f9-5a7f-4632-81d4-a7bdab79a4ae/203561620043_R01C01_Red.idat 13676212 IDAT NA ab6719f9-5a7f-4632-81d4-a7bdab79a4ae katmai C3N-03428.miRNA-Seq.T C3N-03428 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e4b21eb7-e2b0-4964-b321-efe09cabc0a8/190712_UNC32-K00270_0192_BH7HL3BBXY_GCCAAT_S29_L005_R1_001.unaln.bam 256151116 BAM NA e4b21eb7-e2b0-4964-b321-efe09cabc0a8 katmai C3N-03428.miRNA-Seq.T.hg38 C3N-03428 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/f8207596-f3ec-4fa9-a843-015006f95ef3/86f5958b-f491-408e-a9f1-6d79fb4cb40d_mirnaseq_gdc_realn.bam 284249769 BAM hg38 f8207596-f3ec-4fa9-a843-015006f95ef3 katmai -C3N-03428.RNA-Seq.genomic.T.hg38 C3N-03428 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c0d74411-5f29-45c8-b739-eed030192a41/3329ef13-fd0b-40c7-82c6-6bad8ce7411b.rna_seq.genomic.gdc_realn.bam 8068369339 BAM hg38 c0d74411-5f29-45c8-b739-eed030192a41 katmai C3N-03430.MethArray.Green.T C3N-03430 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d1117d8a-8d93-4e88-a5e8-500f196b5d26/203561450006_R08C01_Grn.idat 13676236 IDAT NA d1117d8a-8d93-4e88-a5e8-500f196b5d26 katmai C3N-03430.MethArray.Red.T C3N-03430 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3713dafe-38c5-48b9-86d7-5f73ebf9feae/203561450006_R08C01_Red.idat 13676236 IDAT NA 3713dafe-38c5-48b9-86d7-5f73ebf9feae katmai C3N-03430.miRNA-Seq.T C3N-03430 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/06aab8c5-097f-46a8-8997-ced55c40b803/190813_UNC32-K00270_0196_AH5MCWBBXY_CAGATC_S36_L004_R1_001.unaln.bam 311889008 BAM NA 06aab8c5-097f-46a8-8997-ced55c40b803 katmai C3N-03430.miRNA-Seq.T.hg38 C3N-03430 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3474adb1-bf9c-4dda-8527-33fef24a3d55/c284beff-1380-4156-a90c-ba1d022f1e03_mirnaseq_gdc_realn.bam 348498633 BAM hg38 3474adb1-bf9c-4dda-8527-33fef24a3d55 katmai -C3N-03430.RNA-Seq.genomic.T.hg38 C3N-03430 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8691e3c3-7130-44ce-9511-14147cb86e7c/efeec49a-bb01-4ec1-8b95-c0cb1b159de7.rna_seq.genomic.gdc_realn.bam 6630366085 BAM hg38 8691e3c3-7130-44ce-9511-14147cb86e7c katmai C3N-03433.MethArray.Green.T C3N-03433 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f3d5b2cd-08a5-4505-ada7-ef8fa1347134/203220070084_R05C01_Grn.idat 13676206 IDAT NA f3d5b2cd-08a5-4505-ada7-ef8fa1347134 katmai C3N-03433.MethArray.Red.T C3N-03433 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/68814217-c1a6-4642-a357-60849b805e4e/203220070084_R05C01_Red.idat 13676206 IDAT NA 68814217-c1a6-4642-a357-60849b805e4e katmai C3N-03433.miRNA-Seq.T C3N-03433 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/580c152f-0bf9-44bc-b980-6598d4e7e533/190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L007_R1_001.unaln.bam 154690817 BAM NA 580c152f-0bf9-44bc-b980-6598d4e7e533 katmai @@ -8687,7 +8395,6 @@ C3N-03439.MethArray.Green.T C3N-03439 PDA Methylation Array tumor /diskmnt/Proje C3N-03439.MethArray.Red.T C3N-03439 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dd25ef84-d242-4962-815c-9a76bc282df3/203561620095_R01C01_Red.idat 13676216 IDAT NA dd25ef84-d242-4962-815c-9a76bc282df3 katmai C3N-03439.miRNA-Seq.T C3N-03439 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6a6f1bdf-3399-4258-98b3-af71700678fe/190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L004_R1_001.unaln.bam 209647151 BAM NA 6a6f1bdf-3399-4258-98b3-af71700678fe katmai C3N-03439.miRNA-Seq.T.hg38 C3N-03439 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a51e8bae-1604-4095-91cb-0a21c9bdd62d/cfe81935-c97e-464c-bf66-e21e3856757e_mirnaseq_gdc_realn.bam 241526043 BAM hg38 a51e8bae-1604-4095-91cb-0a21c9bdd62d katmai -C3N-03439.RNA-Seq.genomic.T.hg38 C3N-03439 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/653a9480-f69d-4fcb-9686-c081d42e9726/363508d5-a12a-4cca-8d7a-27c2b621e446.rna_seq.genomic.gdc_realn.bam 7902532067 BAM hg38 653a9480-f69d-4fcb-9686-c081d42e9726 katmai C3N-03440.MethArray.Green.A C3N-03440 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4ed1eb10-ac7b-460a-a1fe-abaaf59a49a9/203561620052_R07C01_Grn.idat 13676211 IDAT NA 4ed1eb10-ac7b-460a-a1fe-abaaf59a49a9 katmai C3N-03440.MethArray.Green.T C3N-03440 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5f4c3129-c2f4-4850-b7c7-0f1c1f3cd5ec/203561450062_R01C01_Grn.idat 13676217 IDAT NA 5f4c3129-c2f4-4850-b7c7-0f1c1f3cd5ec katmai C3N-03440.MethArray.Red.A C3N-03440 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bc5d1185-037d-4dfa-a9e9-7dc5b9374fb6/203561620052_R07C01_Red.idat 13676211 IDAT NA bc5d1185-037d-4dfa-a9e9-7dc5b9374fb6 katmai @@ -8696,8 +8403,6 @@ C3N-03440.miRNA-Seq.A C3N-03440 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-03440.miRNA-Seq.A.hg38 C3N-03440 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/e4c62540-de65-4be6-9b0f-397245edf8b9/4a20de06-79ec-4920-92b6-1178541a7e66_mirnaseq_gdc_realn.bam 289167908 BAM hg38 e4c62540-de65-4be6-9b0f-397245edf8b9 katmai C3N-03440.miRNA-Seq.T C3N-03440 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0aefa218-3f11-42f5-a99c-779b5d325ba0/190712_UNC32-K00270_0192_BH7HL3BBXY_TAATCG_S18_L004_R1_001.unaln.bam 215458294 BAM NA 0aefa218-3f11-42f5-a99c-779b5d325ba0 katmai C3N-03440.miRNA-Seq.T.hg38 C3N-03440 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a9581d80-c6f2-45b5-b969-460af965bd3b/84854605-fa1e-4b14-9786-0de6323df9a4_mirnaseq_gdc_realn.bam 244230165 BAM hg38 a9581d80-c6f2-45b5-b969-460af965bd3b katmai -C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/367330ed-aace-427a-bad9-ffe8ed224f6c/d257e23c-e850-41ab-a8a6-19af4ec51ef8.rna_seq.genomic.gdc_realn.bam 6121338339 BAM hg38 367330ed-aace-427a-bad9-ffe8ed224f6c katmai -C3N-03440.RNA-Seq.genomic.T.hg38 C3N-03440 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b8cb611b-a493-42b7-8be9-5d38a20ccc35/7d9277eb-45b2-40ac-81ac-7b788020952d.rna_seq.genomic.gdc_realn.bam 9809272543 BAM hg38 b8cb611b-a493-42b7-8be9-5d38a20ccc35 katmai C3N-03441.MethArray.Green.A C3N-03441 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9869303c-e56b-4a3a-8b85-4dbc4d6c1e74/203219650221_R06C01_Grn.idat 13676216 IDAT NA 9869303c-e56b-4a3a-8b85-4dbc4d6c1e74 katmai C3N-03441.MethArray.Green.T C3N-03441 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6b7746e8-3420-48fd-8bfa-e9aeaf15be07/203219640047_R07C01_Grn.idat 13676206 IDAT NA 6b7746e8-3420-48fd-8bfa-e9aeaf15be07 katmai C3N-03441.MethArray.Red.A C3N-03441 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ea0cc90b-ebaf-42b2-a492-d729818e5545/203219650221_R06C01_Red.idat 13676216 IDAT NA ea0cc90b-ebaf-42b2-a492-d729818e5545 katmai @@ -8819,24 +8524,20 @@ C3N-03665.MethArray.Green.T C3N-03665 PDA Methylation Array tumor /diskmnt/Proje C3N-03665.MethArray.Red.T C3N-03665 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/47c90785-8de9-4f25-b959-52654727d911/203561620049_R01C01_Red.idat 13676232 IDAT NA 47c90785-8de9-4f25-b959-52654727d911 katmai C3N-03665.miRNA-Seq.T C3N-03665 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/901b4de0-6074-46f0-8a37-1814179588cc/190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L004_R1_001.unaln.bam 529849778 BAM NA 901b4de0-6074-46f0-8a37-1814179588cc katmai C3N-03665.miRNA-Seq.T.hg38 C3N-03665 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6146e431-ad3b-424f-9499-851aa31d4e24/f267e13b-6548-4b97-9fab-0c90044775d8_mirnaseq_gdc_realn.bam 590655875 BAM hg38 6146e431-ad3b-424f-9499-851aa31d4e24 katmai -C3N-03665.RNA-Seq.genomic.T.hg38 C3N-03665 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9e038a4e-3ca3-4228-9676-153817601629/92b32d9a-f817-4164-a015-4e5fcc89333e.rna_seq.genomic.gdc_realn.bam 6276087211 BAM hg38 9e038a4e-3ca3-4228-9676-153817601629 katmai C3N-03666.MethArray.Green.T C3N-03666 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dddc4258-cdb6-4ba7-9594-b2f7b3bcb2bc/203561450048_R01C01_Grn.idat 13676226 IDAT NA dddc4258-cdb6-4ba7-9594-b2f7b3bcb2bc katmai C3N-03666.MethArray.Red.T C3N-03666 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/061e061a-16b0-4db9-a513-a6686cf43c03/203561450048_R01C01_Red.idat 13676226 IDAT NA 061e061a-16b0-4db9-a513-a6686cf43c03 katmai C3N-03666.miRNA-Seq.T C3N-03666 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/80c001c1-d6b6-48dd-bb8b-c1004b5fe7f2/190813_UNC32-K00270_0196_AH5MCWBBXY_GATCAG_S38_L004_R1_001.unaln.bam 114279935 BAM NA 80c001c1-d6b6-48dd-bb8b-c1004b5fe7f2 katmai C3N-03666.miRNA-Seq.T.hg38 C3N-03666 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/30122042-6ade-4181-9390-4195edd77a0d/ffca87bf-40ec-444f-b020-6d7e9131e27a_mirnaseq_gdc_realn.bam 128370410 BAM hg38 30122042-6ade-4181-9390-4195edd77a0d katmai -C3N-03666.RNA-Seq.genomic.T.hg38 C3N-03666 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b9d887a1-a509-47bc-91c2-ef2fb89de2ca/12d5e957-1f63-44ad-ac37-7d9174f43735.rna_seq.genomic.gdc_realn.bam 9583269555 BAM hg38 b9d887a1-a509-47bc-91c2-ef2fb89de2ca katmai C3N-03670.MethArray.Green.A C3N-03670 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bc858e08-934c-4cfe-87c2-a7a50f96524d/203561450114_R07C01_Grn.idat 13676226 IDAT NA bc858e08-934c-4cfe-87c2-a7a50f96524d katmai C3N-03670.MethArray.Green.T C3N-03670 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cf0f96e9-ae27-4205-9772-d051827819ee/203561450027_R06C01_Grn.idat 13676221 IDAT NA cf0f96e9-ae27-4205-9772-d051827819ee katmai C3N-03670.MethArray.Red.A C3N-03670 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9006718f-c4f6-44d1-8bd4-bc868d470497/203561450114_R07C01_Red.idat 13676226 IDAT NA 9006718f-c4f6-44d1-8bd4-bc868d470497 katmai C3N-03670.MethArray.Red.T C3N-03670 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8234e634-be39-4afc-8f6b-9fb700b9695e/203561450027_R06C01_Red.idat 13676221 IDAT NA 8234e634-be39-4afc-8f6b-9fb700b9695e katmai C3N-03670.miRNA-Seq.T C3N-03670 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/31ee2725-b9b6-46a6-871f-627b7f6e209b/190813_UNC32-K00270_0196_AH5MCWBBXY_CCGTCC_S45_L002_R1_001.unaln.bam 172881467 BAM NA 31ee2725-b9b6-46a6-871f-627b7f6e209b katmai C3N-03670.miRNA-Seq.T.hg38 C3N-03670 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/537a274e-fad7-4b73-a7bc-c5c74c37f986/31bed28f-8560-4e83-b187-c8446056d700_mirnaseq_gdc_realn.bam 196558200 BAM hg38 537a274e-fad7-4b73-a7bc-c5c74c37f986 katmai -C3N-03670.RNA-Seq.genomic.T.hg38 C3N-03670 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7e91a6f2-4a76-4a6a-b0bc-396bbc450889/5caa1d5e-1bc2-4fb3-9f9f-0bf0eeb7224b.rna_seq.genomic.gdc_realn.bam 10727864756 BAM hg38 7e91a6f2-4a76-4a6a-b0bc-396bbc450889 katmai C3N-03754.MethArray.Green.T C3N-03754 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/348d04c4-bb5c-4d93-a164-9e89972c54ab/203273630048_R06C01_Grn.idat 13676231 IDAT NA 348d04c4-bb5c-4d93-a164-9e89972c54ab katmai C3N-03754.MethArray.Red.T C3N-03754 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/57a6088e-2f0b-4f33-9460-84dfcaebcbe7/203273630048_R06C01_Red.idat 13676231 IDAT NA 57a6088e-2f0b-4f33-9460-84dfcaebcbe7 katmai C3N-03754.miRNA-Seq.T C3N-03754 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fea0f9a6-bb02-462d-ab92-259fa6940239/190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L002_R1_001.unaln.bam 142850165 BAM NA fea0f9a6-bb02-462d-ab92-259fa6940239 katmai C3N-03754.miRNA-Seq.T.hg38 C3N-03754 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/24be9d9e-c424-42b6-b8b0-0d8cf21d75ce/79feb52c-1046-41ef-80f0-7f615c208bac_mirnaseq_gdc_realn.bam 159875379 BAM hg38 24be9d9e-c424-42b6-b8b0-0d8cf21d75ce katmai -C3N-03754.RNA-Seq.genomic.T.hg38 C3N-03754 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/859c7264-c004-4ae0-8fd7-ae263ba3a063/aa1e0a00-57be-4e50-ab06-cbe5d02b1efd.rna_seq.genomic.gdc_realn.bam 10073039315 BAM hg38 859c7264-c004-4ae0-8fd7-ae263ba3a063 katmai C3N-03755.MethArray.Green.T C3N-03755 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/6530c9a6-bc4e-4c26-b3dc-b489e051efcf/204367490090_R02C01_Grn.idat 13677885 IDAT NA 6530c9a6-bc4e-4c26-b3dc-b489e051efcf katmai C3N-03755.MethArray.Red.T C3N-03755 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/23877301-42b9-48b0-bd53-ac21f17fff1a/204367490090_R02C01_Red.idat 13677885 IDAT NA 23877301-42b9-48b0-bd53-ac21f17fff1a katmai C3N-03755.miRNA-Seq.T.hg38 C3N-03755 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/34fe4f31-bd59-4ee0-b450-71b440bb2c5f/05fdecb5-b154-4c51-be6a-4ab26d0ef0ac_mirnaseq_gdc_realn.bam 227839068 BAM hg38 34fe4f31-bd59-4ee0-b450-71b440bb2c5f katmai @@ -8870,7 +8571,6 @@ C3N-03778.MethArray.Red.A C3N-03778 PDA Methylation Array tissue_normal /diskmnt C3N-03778.MethArray.Red.T C3N-03778 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aeaaf74d-7228-4af6-9123-114427e2f887/203561620153_R01C01_Red.idat 13676211 IDAT NA aeaaf74d-7228-4af6-9123-114427e2f887 katmai C3N-03778.miRNA-Seq.T C3N-03778 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/53cab8d5-e5dc-4a9f-87f3-59eada94071b/190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L004_R1_001.unaln.bam 289370923 BAM NA 53cab8d5-e5dc-4a9f-87f3-59eada94071b katmai C3N-03778.miRNA-Seq.T.hg38 C3N-03778 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c3701090-ae6a-4590-a4bc-25ae3bd43b82/29558d21-bd5a-4266-b99e-c6e0d17e4023_mirnaseq_gdc_realn.bam 322001244 BAM hg38 c3701090-ae6a-4590-a4bc-25ae3bd43b82 katmai -C3N-03778.RNA-Seq.genomic.T.hg38 C3N-03778 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9695eae4-5566-4699-aa1a-b2dc361a1d48/1ea24a8a-a114-4dd3-b3be-8b1aab9a80d8.rna_seq.genomic.gdc_realn.bam 9627492553 BAM hg38 9695eae4-5566-4699-aa1a-b2dc361a1d48 katmai C3N-03780.MethArray.Green.A C3N-03780 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/94a1db7c-3378-4a49-9094-c42f9d7f8178/203561450027_R07C01_Grn.idat 13676221 IDAT NA 94a1db7c-3378-4a49-9094-c42f9d7f8178 katmai C3N-03780.MethArray.Green.T C3N-03780 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/54fcd1c0-c19f-438d-ae81-006cd5d39c5d/203561620086_R01C01_Grn.idat 13676236 IDAT NA 54fcd1c0-c19f-438d-ae81-006cd5d39c5d katmai C3N-03780.MethArray.Red.A C3N-03780 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/44e826c6-4adc-4850-a560-a9b5df483d9e/203561450027_R07C01_Red.idat 13676221 IDAT NA 44e826c6-4adc-4850-a560-a9b5df483d9e katmai @@ -8879,8 +8579,6 @@ C3N-03780.miRNA-Seq.A C3N-03780 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-03780.miRNA-Seq.A.hg38 C3N-03780 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/6db2efe0-a69f-4d83-9e12-b0400534f345/d10ad329-7193-48b0-be57-6b6a8c93a4aa_mirnaseq_gdc_realn.bam 336591301 BAM hg38 6db2efe0-a69f-4d83-9e12-b0400534f345 katmai C3N-03780.miRNA-Seq.T C3N-03780 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/47229dd3-65d5-420c-be47-6cc18c907f59/190828_UNC32-K00270_0200_BH7GVJBBXY_GGCTAC_S169_L007_R1_001.unaln.bam 433311583 BAM NA 47229dd3-65d5-420c-be47-6cc18c907f59 katmai C3N-03780.miRNA-Seq.T.hg38 C3N-03780 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/7177ad7e-3dbd-4a40-a672-213f91d96edf/17319d5e-7745-4f16-89d6-faefe5c5cd34_mirnaseq_gdc_realn.bam 483301628 BAM hg38 7177ad7e-3dbd-4a40-a672-213f91d96edf katmai -C3N-03780.RNA-Seq.genomic.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/19d7e303-11e8-411b-82d0-68b631fb577a/aa8fe382-889f-45a1-a046-bb02fda53a6a.rna_seq.genomic.gdc_realn.bam 11544841447 BAM hg38 19d7e303-11e8-411b-82d0-68b631fb577a katmai -C3N-03780.RNA-Seq.genomic.T.hg38 C3N-03780 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/52d2fcb3-f589-4c46-a289-138b40ace481/df017c22-4ba5-4fda-b415-d5bba4b1df99.rna_seq.genomic.gdc_realn.bam 7015491017 BAM hg38 52d2fcb3-f589-4c46-a289-138b40ace481 katmai C3N-03781.MethArray.Green.T C3N-03781 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3dc8a315-545a-4dca-9167-bc876b2e3de4/203271740156_R06C01_Grn.idat 13676211 IDAT NA 3dc8a315-545a-4dca-9167-bc876b2e3de4 katmai C3N-03781.MethArray.Red.T C3N-03781 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a7144e4e-4a2c-4783-9649-d12631f920d1/203271740156_R06C01_Red.idat 13676211 IDAT NA a7144e4e-4a2c-4783-9649-d12631f920d1 katmai C3N-03781.miRNA-Seq.T C3N-03781 HNSCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9c371ebe-d16f-4639-a186-7a9d3fe28aac/190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L006_R1_001.unaln.bam 220688043 BAM NA 9c371ebe-d16f-4639-a186-7a9d3fe28aac katmai @@ -8938,14 +8636,12 @@ C3N-03839.MethArray.Green.T C3N-03839 PDA Methylation Array tumor /diskmnt/Proje C3N-03839.MethArray.Red.T C3N-03839 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0f1b37f4-451c-4cdd-a219-bd7c2eb1641e/203561620043_R02C01_Red.idat 13676211 IDAT NA 0f1b37f4-451c-4cdd-a219-bd7c2eb1641e katmai C3N-03839.miRNA-Seq.T C3N-03839 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/db8dc575-3905-4064-bc66-5513b9faa360/190712_UNC32-K00270_0192_BH7HL3BBXY_CACGAT_S7_L004_R1_001.unaln.bam 284421155 BAM NA db8dc575-3905-4064-bc66-5513b9faa360 katmai C3N-03839.miRNA-Seq.T.hg38 C3N-03839 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b99c875c-d45d-4f35-9e62-d80c5144a65a/5d3c4a12-3ee3-47ec-a6ca-9ed6e4184bdf_mirnaseq_gdc_realn.bam 321090712 BAM hg38 b99c875c-d45d-4f35-9e62-d80c5144a65a katmai -C3N-03839.RNA-Seq.genomic.T.hg38 C3N-03839 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7947df45-0014-4125-b8fe-e0ba0d5a696f/fb6b8765-0054-4037-8d11-60e1f6fa8d37.rna_seq.genomic.gdc_realn.bam 8203129165 BAM hg38 7947df45-0014-4125-b8fe-e0ba0d5a696f katmai C3N-03840.MethArray.Green.A C3N-03840 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/130b2c72-10fe-4b42-93ab-9ebe7a4c2f70/203561620080_R07C01_Grn.idat 13676226 IDAT NA 130b2c72-10fe-4b42-93ab-9ebe7a4c2f70 katmai C3N-03840.MethArray.Green.T C3N-03840 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/21050512-822f-4f8a-8914-d211d3bc04e8/203561450099_R01C01_Grn.idat 13676216 IDAT NA 21050512-822f-4f8a-8914-d211d3bc04e8 katmai C3N-03840.MethArray.Red.A C3N-03840 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f8773038-e974-46f2-9bc3-286a6e7ce815/203561620080_R07C01_Red.idat 13676226 IDAT NA f8773038-e974-46f2-9bc3-286a6e7ce815 katmai C3N-03840.MethArray.Red.T C3N-03840 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4d0bd37-3c2a-4725-bff6-09b6cf855b88/203561450099_R01C01_Red.idat 13676216 IDAT NA e4d0bd37-3c2a-4725-bff6-09b6cf855b88 katmai C3N-03840.miRNA-Seq.T C3N-03840 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4fb76ba7-e571-4f96-bddd-8117d3ebb992/190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L004_R1_001.unaln.bam 219431151 BAM NA 4fb76ba7-e571-4f96-bddd-8117d3ebb992 katmai C3N-03840.miRNA-Seq.T.hg38 C3N-03840 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/0f65ab84-519f-4b16-8618-f8e60ee5f319/1651b695-c146-475c-b6fc-eeca00702fdd_mirnaseq_gdc_realn.bam 250347903 BAM hg38 0f65ab84-519f-4b16-8618-f8e60ee5f319 katmai -C3N-03840.RNA-Seq.genomic.T.hg38 C3N-03840 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d01352d-09ef-4726-aca1-64c558c26c48/11bb8f20-a9b6-48ec-b6cc-8c70de3ade4e.rna_seq.genomic.gdc_realn.bam 7066857007 BAM hg38 0d01352d-09ef-4726-aca1-64c558c26c48 katmai C3N-03841.MethArray.Green.A C3N-03841 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e87b2f10-f4ad-4736-af93-806b656a1ecc/203219650071_R05C01_Grn.idat 13676211 IDAT NA e87b2f10-f4ad-4736-af93-806b656a1ecc katmai C3N-03841.MethArray.Green.T C3N-03841 HNSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4dad86f9-83e2-459b-8bcc-d7ead4b9dc2a/203273200155_R05C01_Grn.idat 13676206 IDAT NA 4dad86f9-83e2-459b-8bcc-d7ead4b9dc2a katmai C3N-03841.MethArray.Red.A C3N-03841 HNSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e4143e4f-53c5-49d1-b6aa-3cf8dc72910f/203219650071_R05C01_Red.idat 13676211 IDAT NA e4143e4f-53c5-49d1-b6aa-3cf8dc72910f katmai @@ -8980,7 +8676,6 @@ C3N-03853.MethArray.Green.T C3N-03853 PDA Methylation Array tumor /diskmnt/Proje C3N-03853.MethArray.Red.T C3N-03853 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5ff4bca8-690b-47a4-8fa2-89b15d537170/203561620132_R01C01_Red.idat 13676211 IDAT NA 5ff4bca8-690b-47a4-8fa2-89b15d537170 katmai C3N-03853.miRNA-Seq.T C3N-03853 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5e030674-df69-46bf-bb40-0625bd852b7d/190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L004_R1_001.unaln.bam 175892230 BAM NA 5e030674-df69-46bf-bb40-0625bd852b7d katmai C3N-03853.miRNA-Seq.T.hg38 C3N-03853 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/3e20566f-3938-45e7-8677-69b23abf5ca0/b4aa1028-91f8-4791-a666-711da8f22bf7_mirnaseq_gdc_realn.bam 196908814 BAM hg38 3e20566f-3938-45e7-8677-69b23abf5ca0 katmai -C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7e472753-6c2f-443b-bdcf-53f1c40dc65f/dd60cb21-c8fe-4a74-81f1-7103e76c31be.rna_seq.genomic.gdc_realn.bam 6328770144 BAM hg38 7e472753-6c2f-443b-bdcf-53f1c40dc65f katmai C3N-03875.MethArray.Green.A C3N-03875 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/146313fd-66c1-44d6-886f-4922aff12360/203219650065_R01C01_Grn.idat 13676226 IDAT NA 146313fd-66c1-44d6-886f-4922aff12360 katmai C3N-03875.MethArray.Green.T C3N-03875 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/057d2bba-0876-4843-b5b9-8f382311a7a5/203219670122_R03C01_Grn.idat 13676226 IDAT NA 057d2bba-0876-4843-b5b9-8f382311a7a5 katmai C3N-03875.MethArray.Red.A C3N-03875 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8691dc46-c6f6-4378-a341-81df5f8bcf17/203219650065_R01C01_Red.idat 13676226 IDAT NA 8691dc46-c6f6-4378-a341-81df5f8bcf17 katmai @@ -9033,7 +8728,6 @@ C3N-03884.MethArray.Red.A C3N-03884 PDA Methylation Array tissue_normal /diskmnt C3N-03884.MethArray.Red.T C3N-03884 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4edad122-e429-40f8-bb03-098fe6b587c5/203561620040_R01C01_Red.idat 13676212 IDAT NA 4edad122-e429-40f8-bb03-098fe6b587c5 katmai C3N-03884.miRNA-Seq.T C3N-03884 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a83670e8-27f1-416f-954d-791e7627673d/190828_UNC32-K00270_0200_BH7GVJBBXY_ACAGTG_S168_L007_R1_001.unaln.bam 394032776 BAM NA a83670e8-27f1-416f-954d-791e7627673d katmai C3N-03884.miRNA-Seq.T.hg38 C3N-03884 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/957f6599-ebef-40ed-80e5-30e0fed4c3b6/d16eea16-2b24-4890-a3c8-968292edaa85_mirnaseq_gdc_realn.bam 437245397 BAM hg38 957f6599-ebef-40ed-80e5-30e0fed4c3b6 katmai -C3N-03884.RNA-Seq.genomic.T.hg38 C3N-03884 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/92df6115-fec4-4c7c-976c-cc9e1365921c/07a73190-c4a0-4de2-8664-ccdb6b6095f0.rna_seq.genomic.gdc_realn.bam 7514515066 BAM hg38 92df6115-fec4-4c7c-976c-cc9e1365921c katmai C3N-03886.MethArray.Green.A C3N-03886 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9c04d0cd-99f0-4e54-abde-9650f24dd2d7/203219760074_R04C01_Grn.idat 13676236 IDAT NA 9c04d0cd-99f0-4e54-abde-9650f24dd2d7 katmai C3N-03886.MethArray.Green.T C3N-03886 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/35d609ef-7268-4d2d-9bff-236353f4882d/203219650098_R07C01_Grn.idat 13676221 IDAT NA 35d609ef-7268-4d2d-9bff-236353f4882d katmai C3N-03886.MethArray.Red.A C3N-03886 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8ee57a02-98e6-4456-860c-18d8be72633f/203219760074_R04C01_Red.idat 13676236 IDAT NA 8ee57a02-98e6-4456-860c-18d8be72633f katmai @@ -9139,7 +8833,6 @@ C3N-04119.MethArray.Red.A C3N-04119 PDA Methylation Array tissue_normal /diskmnt C3N-04119.MethArray.Red.T C3N-04119 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b5cacf99-32bb-44be-8568-bd50d2fba147/203561620008_R01C01_Red.idat 13676236 IDAT NA b5cacf99-32bb-44be-8568-bd50d2fba147 katmai C3N-04119.miRNA-Seq.T C3N-04119 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6b31c026-40a9-44f1-b878-3a326b40c882/190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L004_R1_001.unaln.bam 358918176 BAM NA 6b31c026-40a9-44f1-b878-3a326b40c882 katmai C3N-04119.miRNA-Seq.T.hg38 C3N-04119 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1389286c-e645-49b2-ba4b-b1851dc9a64a/b0ecf8cb-8488-41b2-9307-9b0fa9e88da3_mirnaseq_gdc_realn.bam 407416981 BAM hg38 1389286c-e645-49b2-ba4b-b1851dc9a64a katmai -C3N-04119.RNA-Seq.genomic.T.hg38 C3N-04119 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a4ee55bb-1466-47e4-a747-61c1c68d0f4e/786b9e66-75ef-42c3-b9a5-7e795ed7101a.rna_seq.genomic.gdc_realn.bam 8113496299 BAM hg38 a4ee55bb-1466-47e4-a747-61c1c68d0f4e katmai C3N-04124.MethArray.Green.A C3N-04124 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/22ac14a5-590f-4003-b3c9-6557bb683a46/203219650169_R04C01_Grn.idat 13676231 IDAT NA 22ac14a5-590f-4003-b3c9-6557bb683a46 katmai C3N-04124.MethArray.Green.T C3N-04124 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ddaeaa7f-5206-486f-990e-cec8d970eddd/203219650006_R07C01_Grn.idat 13676235 IDAT NA ddaeaa7f-5206-486f-990e-cec8d970eddd katmai C3N-04124.MethArray.Red.A C3N-04124 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fab80ef4-02af-45e1-ad31-ed0a2953aeff/203219650169_R04C01_Red.idat 13676231 IDAT NA fab80ef4-02af-45e1-ad31-ed0a2953aeff katmai @@ -9152,7 +8845,6 @@ C3N-04126.MethArray.Green.T C3N-04126 PDA Methylation Array tumor /diskmnt/Proje C3N-04126.MethArray.Red.T C3N-04126 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20963994-15a5-4666-8a85-b7f7e2dd7835/203561450020_R08C01_Red.idat 13676221 IDAT NA 20963994-15a5-4666-8a85-b7f7e2dd7835 katmai C3N-04126.miRNA-Seq.T C3N-04126 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/45a79f8a-05be-4e50-b742-a1894c6a19ab/190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L004_R1_001.unaln.bam 262982977 BAM NA 45a79f8a-05be-4e50-b742-a1894c6a19ab katmai C3N-04126.miRNA-Seq.T.hg38 C3N-04126 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/60a39e27-347b-4d29-83ad-89235bd5b4b0/ea3d05c5-d103-44f7-bfbf-1b204471753d_mirnaseq_gdc_realn.bam 296371313 BAM hg38 60a39e27-347b-4d29-83ad-89235bd5b4b0 katmai -C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0818c9a1-d1ce-4b6d-95c5-760080f9b113/6872bf89-41dc-46b3-a3a8-f494769aac20.rna_seq.genomic.gdc_realn.bam 10205301549 BAM hg38 0818c9a1-d1ce-4b6d-95c5-760080f9b113 katmai C3N-04127.MethArray.Green.A C3N-04127 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ab279103-dc51-456c-9439-ef95fd8e3d55/203219720203_R04C01_Grn.idat 13676220 IDAT NA ab279103-dc51-456c-9439-ef95fd8e3d55 katmai C3N-04127.MethArray.Green.T C3N-04127 LSCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ec599e4a-1dc6-440d-bf91-e9b8ae76c88d/203220070151_R07C01_Grn.idat 13676231 IDAT NA ec599e4a-1dc6-440d-bf91-e9b8ae76c88d katmai C3N-04127.MethArray.Red.A C3N-04127 LSCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a887ae74-a009-4c53-b59f-0637fe747a27/203219720203_R04C01_Red.idat 13676220 IDAT NA a887ae74-a009-4c53-b59f-0637fe747a27 katmai @@ -9247,7 +8939,6 @@ C3N-04282.MethArray.Green.T C3N-04282 PDA Methylation Array tumor /diskmnt/Proje C3N-04282.MethArray.Red.T C3N-04282 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/91473de4-0fba-403c-863b-5108f5a93f02/203561450030_R08C01_Red.idat 13676216 IDAT NA 91473de4-0fba-403c-863b-5108f5a93f02 katmai C3N-04282.miRNA-Seq.T C3N-04282 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ec35cf8d-05b6-4010-8dc9-457c3a634436/190712_UNC32-K00270_0192_BH7HL3BBXY_CAGATC_S30_L005_R1_001.unaln.bam 257103157 BAM NA ec35cf8d-05b6-4010-8dc9-457c3a634436 katmai C3N-04282.miRNA-Seq.T.hg38 C3N-04282 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/8f1e49e1-087a-4b8a-b007-7f13a667c47e/8c18775f-8108-49de-a460-79a1c78effb0_mirnaseq_gdc_realn.bam 294680142 BAM hg38 8f1e49e1-087a-4b8a-b007-7f13a667c47e katmai -C3N-04282.RNA-Seq.genomic.T.hg38 C3N-04282 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a09d6aaa-a6da-43e6-807e-c27cae87ffcf/0354b33c-83c4-47ad-a231-cafd2919a142.rna_seq.genomic.gdc_realn.bam 8352808352 BAM hg38 a09d6aaa-a6da-43e6-807e-c27cae87ffcf katmai C3N-04283.MethArray.Green.A C3N-04283 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e3602b90-8032-46fb-b8e5-850aaaec8537/203561620153_R08C01_Grn.idat 13676211 IDAT NA e3602b90-8032-46fb-b8e5-850aaaec8537 katmai C3N-04283.MethArray.Green.T C3N-04283 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/37702234-31bc-449a-b277-276646ca8f2b/203561620064_R01C01_Grn.idat 13676212 IDAT NA 37702234-31bc-449a-b277-276646ca8f2b katmai C3N-04283.MethArray.Red.A C3N-04283 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e6d61efc-a1c0-41b2-9033-fa91694e36ba/203561620153_R08C01_Red.idat 13676211 IDAT NA e6d61efc-a1c0-41b2-9033-fa91694e36ba katmai @@ -9256,13 +8947,10 @@ C3N-04283.miRNA-Seq.A C3N-04283 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cp C3N-04283.miRNA-Seq.A.hg38 C3N-04283 PDA miRNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/19a2ec61-ac7f-45f3-869b-0d3914d2a750/191d4059-d2f9-4667-af41-b657add5f0e2_mirnaseq_gdc_realn.bam 405369372 BAM hg38 19a2ec61-ac7f-45f3-869b-0d3914d2a750 katmai C3N-04283.miRNA-Seq.T C3N-04283 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6ece89d2-f497-43fc-bfe7-73e90b5090cb/190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L004_R1_001.unaln.bam 214184402 BAM NA 6ece89d2-f497-43fc-bfe7-73e90b5090cb katmai C3N-04283.miRNA-Seq.T.hg38 C3N-04283 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/81eaf3a9-719b-4e99-83c9-b7addfe9e5c6/ed60922c-bb9c-46f8-b289-c7dea5afe5fd_mirnaseq_gdc_realn.bam 243853128 BAM hg38 81eaf3a9-719b-4e99-83c9-b7addfe9e5c6 katmai -C3N-04283.RNA-Seq.genomic.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cbd1d714-6b81-4fb1-a6b6-1fe676685353/6ade5019-f998-4e32-928a-a325cd66ac37.rna_seq.genomic.gdc_realn.bam 8988234044 BAM hg38 cbd1d714-6b81-4fb1-a6b6-1fe676685353 katmai -C3N-04283.RNA-Seq.genomic.T.hg38 C3N-04283 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/401fcc6e-7fe9-46e8-88f3-b1886097f601/f13e346c-c53c-44c8-ae31-d2b3495f5283.rna_seq.genomic.gdc_realn.bam 8778807760 BAM hg38 401fcc6e-7fe9-46e8-88f3-b1886097f601 katmai C3N-04284.MethArray.Green.T C3N-04284 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/22b51d39-b5af-4a68-bba3-3e655913745d/203561450046_R06C01_Grn.idat 13676211 IDAT NA 22b51d39-b5af-4a68-bba3-3e655913745d katmai C3N-04284.MethArray.Red.T C3N-04284 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/181674ef-8fee-4353-826d-3fc57019280a/203561450046_R06C01_Red.idat 13676211 IDAT NA 181674ef-8fee-4353-826d-3fc57019280a katmai C3N-04284.miRNA-Seq.T C3N-04284 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8ec06311-31b1-48db-b0fb-1e7b9a03451d/190813_UNC32-K00270_0196_AH5MCWBBXY_TCGAAG_S23_L003_R1_001.unaln.bam 149310583 BAM NA 8ec06311-31b1-48db-b0fb-1e7b9a03451d katmai C3N-04284.miRNA-Seq.T.hg38 C3N-04284 PDA miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/ce8350c3-ca82-497b-b1f6-13e6d9e90cca/477e974f-bc22-441e-9b64-f15b6e2c8cdb_mirnaseq_gdc_realn.bam 170870153 BAM hg38 ce8350c3-ca82-497b-b1f6-13e6d9e90cca katmai -C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/01caf05d-f998-4b97-abff-726a19d42b45/0a4b95b9-5507-4d4b-8f44-5757cdabe1c4.rna_seq.genomic.gdc_realn.bam 7886861222 BAM hg38 01caf05d-f998-4b97-abff-726a19d42b45 katmai C3N-04312.MethArray.Green.T C3N-04312 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/66bf3820-3c75-417b-863f-86e0b1e44443/204372030011_R01C01_Grn.idat 13677890 IDAT NA 66bf3820-3c75-417b-863f-86e0b1e44443 katmai C3N-04312.MethArray.Red.T C3N-04312 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/0d747cb9-cda6-4975-af25-5e0b39b351c7/204372030011_R01C01_Red.idat 13677890 IDAT NA 0d747cb9-cda6-4975-af25-5e0b39b351c7 katmai C3N-04312.miRNA-Seq.T.hg38 C3N-04312 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f/51030b5e-f536-41d9-acf7-8908bfc76d55_mirnaseq_gdc_realn.bam 307510606 BAM hg38 5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f katmai