From 3cc1e216c9dac11e2572677816e63af91a994139 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Thu, 16 Sep 2021 13:40:26 -0500 Subject: [PATCH] Adding batch 821 WGS SV results from compute1 * Work dir: /home/m.wyczalkowski/Projects/CPTAC3/submit/20210916.batch821.SomaticSV --- .../WGS_SV.DCC_analysis_summary.dat | 303 ++++++++++++++++++ 1 file changed, 303 insertions(+) diff --git a/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat b/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat index 81ea734..3501be0 100644 --- a/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat +++ b/DCC_Analysis_Summary/WGS_SV.DCC_analysis_summary.dat @@ -849,6 +849,9 @@ C3L-02384 UCEC WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/UCEC/CPTAC3_UCEC_WGS_SV_ C3L-02389 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02389.evidence_0.9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wgs_gdc_realn.bam 59318267 BAM 100c294e7a335452eeeab847317ae8f8 C3L-02389.WGS.T.hg38 348f3eeb-e418-4596-8915-c3423f148022 C3L-02389.WGS.N.hg38 cbf88027-f2f7-41f6-954e-dac3b7e73e16 4bc50ff8-90c4-4b60-9021-9f3725058a2d C3L-02389 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02389.evidence_1.cb67a9c4-89aa-48a8-8a01-5a7f991bc7a6_wgs_gdc_realn.bam 39720563 BAM 6cefb5be5544f1a960b96593eb225c98 C3L-02389.WGS.T.hg38 348f3eeb-e418-4596-8915-c3423f148022 C3L-02389.WGS.N.hg38 cbf88027-f2f7-41f6-954e-dac3b7e73e16 4bc50ff8-90c4-4b60-9021-9f3725058a2d C3L-02389 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02389.final.SV.WGS.vcf 146333 VCF 73f07d3d891bf92b8ac6915962322188 C3L-02389.WGS.T.hg38 348f3eeb-e418-4596-8915-c3423f148022 C3L-02389.WGS.N.hg38 cbf88027-f2f7-41f6-954e-dac3b7e73e16 4bc50ff8-90c4-4b60-9021-9f3725058a2d +C3L-02392 UCEC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_batch821_20210916/C3L-02392.evidence_0.ebccbb2e-028d-40f4-8880-6dd3967edde8_wgs_gdc_realn.bam 62392480 BAM 528a3abc69f1e2b09623da1a8c17d36f C3L-02392.WGS.T.hg38 6d07581d-a14e-44f3-98b7-af5d6eccd861 C3L-02392.WGS.N.hg38 82831af9-d6ec-4673-8440-5cf41005227a e51557d2-8cb7-4ce9-9f73-b9243d326646 +C3L-02392 UCEC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_batch821_20210916/C3L-02392.evidence_1.c964c60c-be35-45c6-b7a7-12b7fb3622f5_wgs_gdc_realn.bam 60756517 BAM 0c6b1b5afc820beccad834cc1a5c3c0c C3L-02392.WGS.T.hg38 6d07581d-a14e-44f3-98b7-af5d6eccd861 C3L-02392.WGS.N.hg38 82831af9-d6ec-4673-8440-5cf41005227a e51557d2-8cb7-4ce9-9f73-b9243d326646 +C3L-02392 UCEC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_batch821_20210916/C3L-02392.final.SV.WGS.vcf 147399 VCF 61006148742a2486a0c57cc58a4cd4d8 C3L-02392.WGS.T.hg38 6d07581d-a14e-44f3-98b7-af5d6eccd861 C3L-02392.WGS.N.hg38 82831af9-d6ec-4673-8440-5cf41005227a e51557d2-8cb7-4ce9-9f73-b9243d326646 C3L-02395 UCEC WGS_SV v1.0 20190529 Y2 /CPTAC3.Y2_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.0_Y2.b2_20190529/C3L-02395.final.SV.WGS.vcf.gz 18879 VCF 1a5bf43147c5ce454d790efcd361f910 C3L-02395.WGS.T.hg38 62ab4487-f909-4cf1-816f-f33a97e129e1 C3L-02395.WGS.N.hg38 69c6d886-813e-4eab-8c49-96c206af8d9e C3L-02399 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02399.evidence_0.54efbba4-a6e0-4483-8b65-e5e89c443579_wgs_gdc_realn.bam 60501659 BAM 736c27dc82d07efc0912550717207da3 C3L-02399.WGS.T.hg38 035edfef-6cfc-406c-b938-dc8052f6b838 C3L-02399.WGS.N.hg38 c028d7e5-2439-456c-a58f-d69fc4d89fb2 e31b00a7-f9e5-4f05-ae41-b4c9aed8ce8b C3L-02399 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3L-02399.evidence_1.e331d0d8-18dd-47b9-8cf5-11c7cfb1bac7_wgs_gdc_realn.bam 75224757 BAM 9cc00a63be4f673671f7115e3e1f225d C3L-02399.WGS.T.hg38 035edfef-6cfc-406c-b938-dc8052f6b838 C3L-02399.WGS.N.hg38 c028d7e5-2439-456c-a58f-d69fc4d89fb2 e31b00a7-f9e5-4f05-ae41-b4c9aed8ce8b @@ -931,6 +934,9 @@ C3L-02616 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3L-02617 HNSCC WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-02617.evidence_0.f13bac4a-9644-49b5-b293-9a1c7bbc403f_wgs_gdc_realn.bam 45110899 BAM bb92242b11f7dd9c09bd32945ffbb09b C3L-02617.WGS.T.hg38 90464380-6f65-439f-9566-28df2137ae7a C3L-02617.WGS.N.hg38 417dfe70-1bfe-4de0-930c-61ffe8b20253 64df9c52-0d2d-4601-b7b4-83d73fac29af C3L-02617 HNSCC WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-02617.evidence_1.be017248-e1fd-45fd-b185-d0e102ada4e8_wgs_gdc_realn.bam 57845469 BAM 76754e710764a4d461b99a17848d7b04 C3L-02617.WGS.T.hg38 90464380-6f65-439f-9566-28df2137ae7a C3L-02617.WGS.N.hg38 417dfe70-1bfe-4de0-930c-61ffe8b20253 64df9c52-0d2d-4601-b7b4-83d73fac29af C3L-02617 HNSCC WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-02617.final.SV.WGS.vcf 177385 VCF 339976c2571b32c37653148f55926cc2 C3L-02617.WGS.T.hg38 90464380-6f65-439f-9566-28df2137ae7a C3L-02617.WGS.N.hg38 417dfe70-1bfe-4de0-930c-61ffe8b20253 64df9c52-0d2d-4601-b7b4-83d73fac29af +C3L-02618 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-02618.evidence_0.0ef644e0-864e-46a0-8539-b5c476cb0739_wgs_gdc_realn.bam 41140854 BAM 120297f2dce7c50d7230e6d0bcdf99a2 C3L-02618.WGS.T.hg38 2f09606d-6c27-4c48-9f90-c8b4987fdb3f C3L-02618.WGS.N.hg38 f47749cb-0565-4d5f-913e-45ed04aa8ff5 53273ea4-45fb-46fc-b343-8f0131b4dd4f +C3L-02618 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-02618.evidence_1.b233ed86-5554-4dcc-af8e-51fab4b8befa_wgs_gdc_realn.bam 44724493 BAM 6042687dce66f65c98ee54b8ceaa5fdf C3L-02618.WGS.T.hg38 2f09606d-6c27-4c48-9f90-c8b4987fdb3f C3L-02618.WGS.N.hg38 f47749cb-0565-4d5f-913e-45ed04aa8ff5 53273ea4-45fb-46fc-b343-8f0131b4dd4f +C3L-02618 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-02618.final.SV.WGS.vcf 181080 VCF 9baf0cef188f6a67ef41d96de8fcea2f C3L-02618.WGS.T.hg38 2f09606d-6c27-4c48-9f90-c8b4987fdb3f C3L-02618.WGS.N.hg38 f47749cb-0565-4d5f-913e-45ed04aa8ff5 53273ea4-45fb-46fc-b343-8f0131b4dd4f C3L-02619 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-02619.final.SV.WGS.vcf 157518 VCF 53d3df425815ae8e43f31d9c5863e40e C3L-02619.WGS.T.hg38 0698f59a-d0cf-4362-9398-f40c9403ef1a C3L-02619.WGS.N.hg38 52912028-5b24-424a-9690-188bd3bf7b1b C3L-02621 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3L-02621.final.SV.WGS.vcf 291830 VCF c7fbca6ac272fe284165223f75fcfd05 C3L-02621.WGS.T UMich-adhoc-realign C3L-02621.WGS.N UMich-adhoc-realign c4097e71-e84b-49d9-9a18-37ec1c83c6e2 C3L-02624 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-02624.final.SV.WGS.vcf 163987 VCF 8c9c222ff5871457a7d3176a41494ceb C3L-02624.WGS.T.hg38 04034030-8eac-44c6-b0e1-f9e477c978c5 C3L-02624.WGS.N.hg38 69daca40-9f0f-43bd-bfef-9d49b9ec7055 @@ -1157,6 +1163,9 @@ C3L-03727 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3L-03728 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03728.evidence_0.97ec897b-c7b9-4ccb-8bd0-caa209d71254_wgs_gdc_realn.bam 39247682 BAM 0658e6a55d485876dfbec5c5dbab98ad C3L-03728.WGS.T.hg38 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 C3L-03728.WGS.N.hg38 a08af25b-9aed-42e8-9bb2-e32873fe5874 5e9d6df4-b9c1-4cbd-a6f9-39bf319a3fe2 C3L-03728 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03728.evidence_1.269ffccf-de74-4303-8d2f-0b737598d9f9_wgs_gdc_realn.bam 35491498 BAM f74b831f7d4cb345802b200f7acae44f C3L-03728.WGS.T.hg38 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 C3L-03728.WGS.N.hg38 a08af25b-9aed-42e8-9bb2-e32873fe5874 5e9d6df4-b9c1-4cbd-a6f9-39bf319a3fe2 C3L-03728 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03728.final.SV.WGS.vcf 148175 VCF 990168c3253fb844ffc4171354996b35 C3L-03728.WGS.T.hg38 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 C3L-03728.WGS.N.hg38 a08af25b-9aed-42e8-9bb2-e32873fe5874 5e9d6df4-b9c1-4cbd-a6f9-39bf319a3fe2 +C3L-03733 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-03733.evidence_0.b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 55012768 BAM 188c28cf267fb112ecc89e0ad2801b5a C3L-03733.WGS.T.hg38 3670c996-27b9-48ba-ba81-9f8129b1d722 C3L-03733.WGS.N.hg38 4b5cd4a1-6a8d-4d03-a714-0d819779e047 345c05bb-df42-4493-9b87-924fb09a56bc +C3L-03733 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-03733.evidence_1.bfb2401e-4a92-4242-92bb-d01ecb08d14d_wgs_gdc_realn.bam 47363639 BAM c26946bc59532c935ae09cbeedea82cc C3L-03733.WGS.T.hg38 3670c996-27b9-48ba-ba81-9f8129b1d722 C3L-03733.WGS.N.hg38 4b5cd4a1-6a8d-4d03-a714-0d819779e047 345c05bb-df42-4493-9b87-924fb09a56bc +C3L-03733 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-03733.final.SV.WGS.vcf 171084 VCF 540a00d153018d0c8aa88c9d946e4a44 C3L-03733.WGS.T.hg38 3670c996-27b9-48ba-ba81-9f8129b1d722 C3L-03733.WGS.N.hg38 4b5cd4a1-6a8d-4d03-a714-0d819779e047 345c05bb-df42-4493-9b87-924fb09a56bc C3L-03735 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03735.evidence_0.e7d56953-30f9-417c-9e40-1462762bea4f_wgs_gdc_realn.bam 59485758 BAM 05781691c48cf89ed3b4c40f1aff166a C3L-03735.WGS.T.hg38 2273e09f-c959-4216-b55b-8f39dd971741 C3L-03735.WGS.N.hg38 12fe818c-9d4e-47ea-b5d5-b697846bbecb 1a441ffe-1880-4149-a05b-3f76ce39c70f C3L-03735 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03735.evidence_1.8cf70493-a5d8-4a66-af1d-89028cb10621_wgs_gdc_realn.bam 45254245 BAM 7441c6eec782a972c0183dfcf4d9b176 C3L-03735.WGS.T.hg38 2273e09f-c959-4216-b55b-8f39dd971741 C3L-03735.WGS.N.hg38 12fe818c-9d4e-47ea-b5d5-b697846bbecb 1a441ffe-1880-4149-a05b-3f76ce39c70f C3L-03735 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03735.final.SV.WGS.vcf 149685 VCF 402f0ba95976790deae7387938493f5a C3L-03735.WGS.T.hg38 2273e09f-c959-4216-b55b-8f39dd971741 C3L-03735.WGS.N.hg38 12fe818c-9d4e-47ea-b5d5-b697846bbecb 1a441ffe-1880-4149-a05b-3f76ce39c70f @@ -1167,6 +1176,9 @@ C3L-03743 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1. C3L-03744 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03744.evidence_0.3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wgs_gdc_realn.bam 39640564 BAM 3c6cbeb5efc78f3663a11c133d736923 C3L-03744.WGS.T.hg38 603495d3-0a81-4668-a1c8-74a5bbbe8c6b C3L-03744.WGS.N.hg38 28786672-2983-417e-9c3f-32b2a8e7e114 b7e49d22-0527-412e-9308-732b887d9e2c C3L-03744 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03744.evidence_1.b291d9bd-e99f-427c-a1d9-730d69d55a57_wgs_gdc_realn.bam 52946338 BAM c25af730b0b893dc655af0808d39e8fd C3L-03744.WGS.T.hg38 603495d3-0a81-4668-a1c8-74a5bbbe8c6b C3L-03744.WGS.N.hg38 28786672-2983-417e-9c3f-32b2a8e7e114 b7e49d22-0527-412e-9308-732b887d9e2c C3L-03744 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03744.final.SV.WGS.vcf 153160 VCF 1573f37030bd1df24ba05047e64578ad C3L-03744.WGS.T.hg38 603495d3-0a81-4668-a1c8-74a5bbbe8c6b C3L-03744.WGS.N.hg38 28786672-2983-417e-9c3f-32b2a8e7e114 b7e49d22-0527-412e-9308-732b887d9e2c +C3L-03747 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-03747.evidence_0.388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wgs_gdc_realn.bam 45970153 BAM b7d9482fffd1cf21da457e15bd02746e C3L-03747.WGS.T.hg38 ab83eaed-187a-4bb1-ad5c-a8e8c03828cc C3L-03747.WGS.N.hg38 f060af66-6986-4c8b-be4f-29950061dabb 67306c9d-7e4b-4c91-961a-a9fd787e1fec +C3L-03747 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-03747.evidence_1.22d36fbd-33f1-4d30-a20e-a3f59330c5fa_wgs_gdc_realn.bam 53600799 BAM e4a8af343eb71accf484bbc1757d5ee0 C3L-03747.WGS.T.hg38 ab83eaed-187a-4bb1-ad5c-a8e8c03828cc C3L-03747.WGS.N.hg38 f060af66-6986-4c8b-be4f-29950061dabb 67306c9d-7e4b-4c91-961a-a9fd787e1fec +C3L-03747 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-03747.final.SV.WGS.vcf 169399 VCF 6ee6eaa5abf95a72c547a492f6201a9a C3L-03747.WGS.T.hg38 ab83eaed-187a-4bb1-ad5c-a8e8c03828cc C3L-03747.WGS.N.hg38 f060af66-6986-4c8b-be4f-29950061dabb 67306c9d-7e4b-4c91-961a-a9fd787e1fec C3L-03748 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03748.evidence_0.cedd1569-11a3-49f4-a54c-36f18c88e15b_wgs_gdc_realn.bam 49359930 BAM 958ada408d51b5e9718962cf94af5aab C3L-03748.WGS.T.hg38 330758b2-97f5-4111-a2b1-b80145713d3c C3L-03748.WGS.N.hg38 ad507579-6e47-4698-aa55-5d47304df7dd b9ad05d0-60cc-4937-8a32-9d84d67d42ff C3L-03748 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03748.evidence_1.9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wgs_gdc_realn.bam 45359299 BAM c7a614b9abeb49fd89945b71765e87a4 C3L-03748.WGS.T.hg38 330758b2-97f5-4111-a2b1-b80145713d3c C3L-03748.WGS.N.hg38 ad507579-6e47-4698-aa55-5d47304df7dd b9ad05d0-60cc-4937-8a32-9d84d67d42ff C3L-03748 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-03748.final.SV.WGS.vcf 162916 VCF 853b2293205222de71c081695b5460ad C3L-03748.WGS.T.hg38 330758b2-97f5-4111-a2b1-b80145713d3c C3L-03748.WGS.N.hg38 ad507579-6e47-4698-aa55-5d47304df7dd b9ad05d0-60cc-4937-8a32-9d84d67d42ff @@ -1183,12 +1195,18 @@ C3L-03969 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3L-03976 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03976.evidence_0.8a234209-d16c-4a7e-8375-70d06e443c9a_wgs_gdc_realn.bam 68534563 BAM 9fd7b14d572a1046ee61a76537594163 C3L-03976.WGS.T.hg38 e35fc319-46d8-41db-af1e-0b2d5948aa77 C3L-03976.WGS.N.hg38 3bb202a0-5bef-4e77-87d4-ba6ddd84c38d 3cd626dd-6285-409a-b4d1-23a0934709e7 C3L-03976 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03976.evidence_1.78bdd4ee-0128-4b45-bca7-dfc92a9cacf1_wgs_gdc_realn.bam 68076375 BAM 9d8680164b4900fb28e086f1c532c7d9 C3L-03976.WGS.T.hg38 e35fc319-46d8-41db-af1e-0b2d5948aa77 C3L-03976.WGS.N.hg38 3bb202a0-5bef-4e77-87d4-ba6ddd84c38d 3cd626dd-6285-409a-b4d1-23a0934709e7 C3L-03976 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03976.final.SV.WGS.vcf 149707 VCF 19958bd6aa85bab58f3540711aefd1bb C3L-03976.WGS.T.hg38 e35fc319-46d8-41db-af1e-0b2d5948aa77 C3L-03976.WGS.N.hg38 3bb202a0-5bef-4e77-87d4-ba6ddd84c38d 3cd626dd-6285-409a-b4d1-23a0934709e7 +C3L-03982 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-03982.evidence_0.7f608378-bf18-46f6-8c8b-9daca5743541_wgs_gdc_realn.bam 56643316 BAM dbde3f6b73f625a536f381e24ba45388 C3L-03982.WGS.T.hg38 66ac0d8c-a8a1-46e0-86be-8f241588cd47 C3L-03982.WGS.N.hg38 a801f2d8-be1d-4543-a17c-549e5c03f77b b0503160-9b41-4e11-ab22-8b017f2b74da +C3L-03982 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-03982.evidence_1.562209b1-ac63-4e61-bb49-0162738073fb_wgs_gdc_realn.bam 55222781 BAM cb56da7dd9695a48440005eadb08bdb6 C3L-03982.WGS.T.hg38 66ac0d8c-a8a1-46e0-86be-8f241588cd47 C3L-03982.WGS.N.hg38 a801f2d8-be1d-4543-a17c-549e5c03f77b b0503160-9b41-4e11-ab22-8b017f2b74da +C3L-03982 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-03982.final.SV.WGS.vcf 198557 VCF de4b0f351cac971ab5c096340729323a C3L-03982.WGS.T.hg38 66ac0d8c-a8a1-46e0-86be-8f241588cd47 C3L-03982.WGS.N.hg38 a801f2d8-be1d-4543-a17c-549e5c03f77b b0503160-9b41-4e11-ab22-8b017f2b74da C3L-03984 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03984.evidence_0.699d16f1-8b4b-4b48-9876-44499a56b13a_wgs_gdc_realn.bam 46900965 BAM 23e577b626e7d8b8505d41fcbc11a515 C3L-03984.WGS.T.hg38 ad4247d2-7bf6-452f-bf98-b8e7a65aa17d C3L-03984.WGS.N.hg38 00a2f18b-73ee-4edb-85ea-9eaabb554b8a eda00179-3590-4bf0-93d4-a16161f8a481 C3L-03984 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03984.evidence_1.5a5eb3fb-fcca-47bf-be8e-7431634a2361_wgs_gdc_realn.bam 51149561 BAM d71a654e99988fdf1d52f8074ec4af25 C3L-03984.WGS.T.hg38 ad4247d2-7bf6-452f-bf98-b8e7a65aa17d C3L-03984.WGS.N.hg38 00a2f18b-73ee-4edb-85ea-9eaabb554b8a eda00179-3590-4bf0-93d4-a16161f8a481 C3L-03984 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03984.final.SV.WGS.vcf 181499 VCF 3eea83bd1f5c42c4f03985964cc293bb C3L-03984.WGS.T.hg38 ad4247d2-7bf6-452f-bf98-b8e7a65aa17d C3L-03984.WGS.N.hg38 00a2f18b-73ee-4edb-85ea-9eaabb554b8a eda00179-3590-4bf0-93d4-a16161f8a481 C3L-03985 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03985.evidence_0.ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wgs_gdc_realn.bam 69056326 BAM 434d78f1e8881ddd734188eb3451afab C3L-03985.WGS.T.hg38 836e8686-90ce-4136-9115-edaddaa819c6 C3L-03985.WGS.N.hg38 5aba0e04-2e1f-4ae7-918c-8261be9bcddb fd176357-30ce-49cd-9050-7b7fd94728e8 C3L-03985 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03985.evidence_1.25c995d7-c22e-4ac7-8e76-bc68a944f046_wgs_gdc_realn.bam 47974803 BAM cd1c6249c94101e4a0bfcd62409d6a5b C3L-03985.WGS.T.hg38 836e8686-90ce-4136-9115-edaddaa819c6 C3L-03985.WGS.N.hg38 5aba0e04-2e1f-4ae7-918c-8261be9bcddb fd176357-30ce-49cd-9050-7b7fd94728e8 C3L-03985 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-03985.final.SV.WGS.vcf 192251 VCF 4d60c693aedae8cf0197b2bc4148c4f8 C3L-03985.WGS.T.hg38 836e8686-90ce-4136-9115-edaddaa819c6 C3L-03985.WGS.N.hg38 5aba0e04-2e1f-4ae7-918c-8261be9bcddb fd176357-30ce-49cd-9050-7b7fd94728e8 +C3L-03987 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-03987.evidence_0.00f9704c-e6ea-446b-ac12-1f310e969a2b_wgs_gdc_realn.bam 48543642 BAM 7952b45e2d45788749cd8db0bd447201 C3L-03987.WGS.T.hg38 832d5ddd-2ebc-4840-92a7-c0f25855ec1e C3L-03987.WGS.N.hg38 c88a46c1-fe32-430b-a123-5a297afef1c0 68ec15a7-5768-49e8-ad8e-1ade38aebf3e +C3L-03987 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-03987.evidence_1.a70d0e10-82c3-4cf3-b3a3-fc3fed293587_wgs_gdc_realn.bam 56336400 BAM a9fa85b9ba8baef83fb88d36c460b062 C3L-03987.WGS.T.hg38 832d5ddd-2ebc-4840-92a7-c0f25855ec1e C3L-03987.WGS.N.hg38 c88a46c1-fe32-430b-a123-5a297afef1c0 68ec15a7-5768-49e8-ad8e-1ade38aebf3e +C3L-03987 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-03987.final.SV.WGS.vcf 220178 VCF 014878302c15bbb15d317f8fff85b564 C3L-03987.WGS.T.hg38 832d5ddd-2ebc-4840-92a7-c0f25855ec1e C3L-03987.WGS.N.hg38 c88a46c1-fe32-430b-a123-5a297afef1c0 68ec15a7-5768-49e8-ad8e-1ade38aebf3e C3L-04013 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-04013.final.SV.WGS.vcf 190850 VCF aac716e06388be554726c687f8cf1085 C3L-04013.WGS.T.hg38 fa19974e-c452-4f58-ac86-f1a1e9d5439d C3L-04013.WGS.N.hg38 11e71a75-c179-414d-a78f-03aa26e8ef3b C3L-04014 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-04014.final.SV.WGS.vcf 172851 VCF feb9afd4af809b9e2bf15ef445da34a3 C3L-04014.WGS.T.hg38 ab5e2db8-499b-456b-a9a7-7a926b1b48f1 C3L-04014.WGS.N.hg38 8cbda257-6835-4990-81de-e5ffa268a15f C3L-04025 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3L-04025.final.SV.WGS.vcf 271075 VCF 2b8b9cdf2c057edf4eaf2e9b85834507 C3L-04025.WGS.T UMich-adhoc-realign C3L-04025.WGS.N UMich-adhoc-realign ee0a0a7a-ca70-4a03-8a97-e8c42f9d84f7 @@ -1213,6 +1231,9 @@ C3L-04040 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3L-04040 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04040.final.SV.WGS.vcf 147974 VCF 52016562ba2b7594b5b67706bf991b79 C3L-04040.WGS.T.hg38 46922002-23c9-47e7-8119-036e1d14f8e8 C3L-04040.WGS.N.hg38 5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f 1c327164-57c5-4b97-965e-4ebf9f889282 C3L-04071 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-04071.final.SV.WGS.vcf 155152 VCF 3a756e3f9a6caf5b42ded2e88d604a6b C3L-04071.WGS.T.hg38 55d13f2d-9a6a-49ec-a9f2-258019a74413 C3L-04071.WGS.N.hg38 6072dfd0-63ad-46d4-a039-35a0f851216b C3L-04072 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04072.final.SV.WGS.vcf 153640 VCF aaa6be401f48944741c2587b9e80d306 C3L-04072.WGS.T.hg38 abe5e972-1d12-4748-8458-70d58db354f5 C3L-04072.WGS.N.hg38 4d9437e6-d8dd-44ab-b1e5-a68bb179cc11 eddb5670-97f0-44de-b908-b5e9a70345a9 +C3L-04079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04079.evidence_0.9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wgs_gdc_realn.bam 49715780 BAM 5051506a1747bf0dfd763f0593957157 C3L-04079.WGS.T.hg38 40e8d818-d2c1-4bf9-a55b-0835e0ed02db C3L-04079.WGS.N.hg38 6a3d4196-15a5-48bd-bf17-52f093143682 48c2dfdc-71ee-4f81-8205-383321403cc2 +C3L-04079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04079.evidence_1.1acb4845-2e95-438b-95ad-2598b8dce7e7_wgs_gdc_realn.bam 51192503 BAM 81e795dc2a35c92405f7797902c5dae5 C3L-04079.WGS.T.hg38 40e8d818-d2c1-4bf9-a55b-0835e0ed02db C3L-04079.WGS.N.hg38 6a3d4196-15a5-48bd-bf17-52f093143682 48c2dfdc-71ee-4f81-8205-383321403cc2 +C3L-04079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04079.final.SV.WGS.vcf 167795 VCF c45d02265d22cbbc55f7d27a1fb07a17 C3L-04079.WGS.T.hg38 40e8d818-d2c1-4bf9-a55b-0835e0ed02db C3L-04079.WGS.N.hg38 6a3d4196-15a5-48bd-bf17-52f093143682 48c2dfdc-71ee-4f81-8205-383321403cc2 C3L-04080 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04080.final.SV.WGS.vcf 154515 VCF cf5ac0933b3b71bb39876c23ebd81006 C3L-04080.WGS.T.hg38 fd0a5edf-f331-4563-818d-060962d79803 C3L-04080.WGS.N.hg38 68ab3e9a-bd37-44be-8133-99d381095699 471d1bac-b8e2-4005-9944-d793dc60843c C3L-04082 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04082.evidence_0.bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 49302562 BAM f46b2b72dd99343b0ef15f8df08f9d1a C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 b99c5c17-9751-4496-bcc4-962febc52b42 C3L-04082 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04082.evidence_1.55106539-3a36-4192-9e5c-0e548beee398_wgs_gdc_realn.bam 57742688 BAM 4deeb491fba52d9bc1b921d46f4bc66c C3L-04082.WGS.T.hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 C3L-04082.WGS.N.hg38 59832d48-68b8-4628-8d69-7508a94d58a8 b99c5c17-9751-4496-bcc4-962febc52b42 @@ -1223,12 +1244,21 @@ C3L-04083 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3L-04084 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-04084.evidence_0.2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wgs_gdc_realn.bam 35806563 BAM d9b7460b58c4c363cff6354206e5ee1c C3L-04084.WGS.T.hg38 9b387bac-d0d0-477d-a0d2-b93d22100e1a C3L-04084.WGS.N.hg38 5b481775-6b55-4ac6-811e-30d61f8628a9 0f1f0a61-b9c0-4d67-abf7-d7b95715275e C3L-04084 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-04084.evidence_1.a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wgs_gdc_realn.bam 39606588 BAM dffcd8c3de88e2f98cd21478f517f776 C3L-04084.WGS.T.hg38 9b387bac-d0d0-477d-a0d2-b93d22100e1a C3L-04084.WGS.N.hg38 5b481775-6b55-4ac6-811e-30d61f8628a9 0f1f0a61-b9c0-4d67-abf7-d7b95715275e C3L-04084 GBM WGS_SV v1.1 20201217 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_WGS_SomaticSV.22_58_20201217/C3L-04084.final.SV.WGS.vcf 185565 VCF 299214357edca0e7557ad5323a134ed2 C3L-04084.WGS.T.hg38 9b387bac-d0d0-477d-a0d2-b93d22100e1a C3L-04084.WGS.N.hg38 5b481775-6b55-4ac6-811e-30d61f8628a9 0f1f0a61-b9c0-4d67-abf7-d7b95715275e +C3L-04085 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-04085.evidence_0.a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 50298992 BAM 12e50a2d789be269fc3424caaaabf39a C3L-04085.WGS.T.hg38 7c2f1712-0980-4d6f-9dda-6c10a459d864 C3L-04085.WGS.N.hg38 71b6faf7-a10b-4bc5-b997-e075c6806937 ef480c98-1d6b-4675-a006-72da956813b6 +C3L-04085 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-04085.evidence_1.c775700c-9771-4aba-ae72-32627a2c70e2_wgs_gdc_realn.bam 57348140 BAM 235a8e5079b2a2ffa702c544594a5105 C3L-04085.WGS.T.hg38 7c2f1712-0980-4d6f-9dda-6c10a459d864 C3L-04085.WGS.N.hg38 71b6faf7-a10b-4bc5-b997-e075c6806937 ef480c98-1d6b-4675-a006-72da956813b6 +C3L-04085 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-04085.final.SV.WGS.vcf 242165 VCF 77faed65ddba145caaedbd9895251058 C3L-04085.WGS.T.hg38 7c2f1712-0980-4d6f-9dda-6c10a459d864 C3L-04085.WGS.N.hg38 71b6faf7-a10b-4bc5-b997-e075c6806937 ef480c98-1d6b-4675-a006-72da956813b6 C3L-04090 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04090.evidence_0.cd982953-0066-4729-91e5-ccf5800c6287_wgs_gdc_realn.bam 61067328 BAM 55cdb3a54cf97ccc3084884cebfd5474 C3L-04090.WGS.T.hg38 c3ab0336-b7dc-4739-a99c-faf95f70764c C3L-04090.WGS.N.hg38 b005d5ce-da55-4484-b85f-33250d2f2f93 7af8dbf3-0b8d-4214-963b-07306c0a2552 C3L-04090 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04090.evidence_1.0dc0882f-2967-4268-afaa-eff7fa83e921_wgs_gdc_realn.bam 60376787 BAM f61d00a1870e873a5162a6a0da5f77b8 C3L-04090.WGS.T.hg38 c3ab0336-b7dc-4739-a99c-faf95f70764c C3L-04090.WGS.N.hg38 b005d5ce-da55-4484-b85f-33250d2f2f93 7af8dbf3-0b8d-4214-963b-07306c0a2552 C3L-04090 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04090.final.SV.WGS.vcf 206765 VCF a5499079c40d5c9cdf0a128ce52fedd0 C3L-04090.WGS.T.hg38 c3ab0336-b7dc-4739-a99c-faf95f70764c C3L-04090.WGS.N.hg38 b005d5ce-da55-4484-b85f-33250d2f2f93 7af8dbf3-0b8d-4214-963b-07306c0a2552 C3L-04213 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04213.evidence_0.1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wgs_gdc_realn.bam 47536895 BAM cd5877413f266bce201a36084d0c01de C3L-04213.WGS.T.hg38 bb4472a3-b931-436b-a6f2-028f0e236229 C3L-04213.WGS.N.hg38 e4a20d36-782a-4b14-a985-15b48497ff4e c98b2a6f-60d0-49b4-b9ce-0abf2e4c8894 C3L-04213 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04213.evidence_1.c7af6007-1e13-438f-a4fe-d011d96669e3_wgs_gdc_realn.bam 39460610 BAM 36cbc24dbbfd8529a9cea93e71581f9c C3L-04213.WGS.T.hg38 bb4472a3-b931-436b-a6f2-028f0e236229 C3L-04213.WGS.N.hg38 e4a20d36-782a-4b14-a985-15b48497ff4e c98b2a6f-60d0-49b4-b9ce-0abf2e4c8894 C3L-04213 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04213.final.SV.WGS.vcf 174305 VCF c36248ea8721b042eeda2c4052476602 C3L-04213.WGS.T.hg38 bb4472a3-b931-436b-a6f2-028f0e236229 C3L-04213.WGS.N.hg38 e4a20d36-782a-4b14-a985-15b48497ff4e c98b2a6f-60d0-49b4-b9ce-0abf2e4c8894 +C3L-04216 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04216.evidence_0.a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 69997107 BAM a5a70ceaede0f1610ca5dba3d1415f36 C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 ad39c537-19ff-47a8-989b-51d58173097f +C3L-04216 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04216.evidence_1.44f13f39-00b5-4c5b-9582-e06616a7f968_wgs_gdc_realn.bam 56083397 BAM 3f39ecf16d3a2e3bf25c32c2b6bcbec3 C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 ad39c537-19ff-47a8-989b-51d58173097f +C3L-04216 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04216.final.SV.WGS.vcf 180153 VCF ecb2cde0afb9c784ae6261fbcb8d68ce C3L-04216.WGS.T.hg38 2fc1dd2f-7571-42ee-820c-68341519e90c C3L-04216.WGS.N.hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 ad39c537-19ff-47a8-989b-51d58173097f +C3L-04336 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04336.evidence_0.4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 64399951 BAM 14b2695081af226e57fbb2cdbeed8605 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae a9e1888e-cf36-4418-9648-ba94f851305e +C3L-04336 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04336.evidence_1.fe1754f9-bcfe-4701-99e2-50d94e7e8c5c_wgs_gdc_realn.bam 55196550 BAM b61b01060a3671c506f7cc63121987c4 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae a9e1888e-cf36-4418-9648-ba94f851305e +C3L-04336 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04336.final.SV.WGS.vcf 208242 VCF 3551cbd459f9b4dbbb7bc3f6979e9151 C3L-04336.WGS.T.hg38 43875a6f-1286-408a-b54d-150b608901ac C3L-04336.WGS.N.hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae a9e1888e-cf36-4418-9648-ba94f851305e C3L-04339 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04339.evidence_0.33f46088-32c6-48b4-8a6b-2290453f2095_wgs_gdc_realn.bam 45443149 BAM a4fc46c5be6b2c4811dc450790a0fdfe C3L-04339.WGS.T.hg38 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 C3L-04339.WGS.N.hg38 a78992b6-5d44-4e49-ba64-f99c06d9700e 5342fbe9-f912-4877-9aef-f3524c141047 C3L-04339 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04339.evidence_1.ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wgs_gdc_realn.bam 47959616 BAM 136c81fe63606dbdcda211ccea9155cd C3L-04339.WGS.T.hg38 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 C3L-04339.WGS.N.hg38 a78992b6-5d44-4e49-ba64-f99c06d9700e 5342fbe9-f912-4877-9aef-f3524c141047 C3L-04339 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04339.final.SV.WGS.vcf 154537 VCF f778e7964b6210d00e635ca77b16f74d C3L-04339.WGS.T.hg38 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 C3L-04339.WGS.N.hg38 a78992b6-5d44-4e49-ba64-f99c06d9700e 5342fbe9-f912-4877-9aef-f3524c141047 @@ -1236,13 +1266,43 @@ C3L-04354 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_ C3L-04359 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04359.evidence_0.d7706205-c0e2-4a84-a0d3-5496598cbf10_wgs_gdc_realn.bam 44443653 BAM c2779312c572dd5318b072c3a2e5d10c C3L-04359.WGS.T.hg38 d7d2db0a-f513-4241-9a62-c47f70046392 C3L-04359.WGS.N.hg38 a64412f1-74c9-486b-98a7-9eba8d21f9fb 958ebdb8-3981-4124-979b-20026b4d0fbf C3L-04359 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04359.evidence_1.7dbf52e5-6cf7-44bf-b211-2941a5917899_wgs_gdc_realn.bam 37519617 BAM 2dba899c25cb1c378d477a0f7a054a63 C3L-04359.WGS.T.hg38 d7d2db0a-f513-4241-9a62-c47f70046392 C3L-04359.WGS.N.hg38 a64412f1-74c9-486b-98a7-9eba8d21f9fb 958ebdb8-3981-4124-979b-20026b4d0fbf C3L-04359 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04359.final.SV.WGS.vcf 147159 VCF ebe19f0ce17e1a1987ee11f686ae8c9c C3L-04359.WGS.T.hg38 d7d2db0a-f513-4241-9a62-c47f70046392 C3L-04359.WGS.N.hg38 a64412f1-74c9-486b-98a7-9eba8d21f9fb 958ebdb8-3981-4124-979b-20026b4d0fbf +C3L-04361 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04361.evidence_0.84411001-c027-4951-b815-ff6ed4482914_wgs_gdc_realn.bam 80596001 BAM c7c9df2dedac6533ac13dfc9bb024533 C3L-04361.WGS.T.hg38 8f462f6a-1d87-4669-bd8d-c4a32b90af14 C3L-04361.WGS.N.hg38 62d41a03-8349-40fa-bd86-f48e41d8d9b2 f13c6678-db73-42a9-8414-ab8f5eb80204 +C3L-04361 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04361.evidence_1.6eb8c4ee-7977-49ea-9e1f-dc640032b670_wgs_gdc_realn.bam 71895133 BAM 2b2cf24da7965f41d9f0336882af0afb C3L-04361.WGS.T.hg38 8f462f6a-1d87-4669-bd8d-c4a32b90af14 C3L-04361.WGS.N.hg38 62d41a03-8349-40fa-bd86-f48e41d8d9b2 f13c6678-db73-42a9-8414-ab8f5eb80204 +C3L-04361 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04361.final.SV.WGS.vcf 201034 VCF 05ff0062b430a3d06a55f848420c4b51 C3L-04361.WGS.T.hg38 8f462f6a-1d87-4669-bd8d-c4a32b90af14 C3L-04361.WGS.N.hg38 62d41a03-8349-40fa-bd86-f48e41d8d9b2 f13c6678-db73-42a9-8414-ab8f5eb80204 C3L-04362 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04362.evidence_0.6b29a573-c2f6-4614-9f25-14c918babfa8_wgs_gdc_realn.bam 35497091 BAM 5138c366bd51ad5b831913dbc5c8e077 C3L-04362.WGS.T.hg38 dddd8326-8131-4431-8f69-3bb571ce57e9 C3L-04362.WGS.N.hg38 1ac3d361-eef2-4263-85c2-f8748a9379cf 4ab8f7df-146e-440b-8dff-d08978e1da8d C3L-04362 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04362.evidence_1.54bcff95-090d-41c1-92c6-66140f4b3ab9_wgs_gdc_realn.bam 48455180 BAM 564b4ed4938e819ca148009c2790ec74 C3L-04362.WGS.T.hg38 dddd8326-8131-4431-8f69-3bb571ce57e9 C3L-04362.WGS.N.hg38 1ac3d361-eef2-4263-85c2-f8748a9379cf 4ab8f7df-146e-440b-8dff-d08978e1da8d C3L-04362 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04362.final.SV.WGS.vcf 180063 VCF ea16e1c590789d6236360f822e066a57 C3L-04362.WGS.T.hg38 dddd8326-8131-4431-8f69-3bb571ce57e9 C3L-04362.WGS.N.hg38 1ac3d361-eef2-4263-85c2-f8748a9379cf 4ab8f7df-146e-440b-8dff-d08978e1da8d C3L-04365 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04365.evidence_0.a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wgs_gdc_realn.bam 74938550 BAM 6584814e4917985d5657f2db1dd8bad6 C3L-04365.WGS.T.hg38 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c C3L-04365.WGS.N.hg38 a65d2756-edfd-4640-ac1a-10ef43808513 3368441e-bb73-49c1-8f07-24bacfc51ca2 C3L-04365 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04365.evidence_1.f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wgs_gdc_realn.bam 50351240 BAM 021f7e93d9af3c6f290bd9539447b343 C3L-04365.WGS.T.hg38 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c C3L-04365.WGS.N.hg38 a65d2756-edfd-4640-ac1a-10ef43808513 3368441e-bb73-49c1-8f07-24bacfc51ca2 C3L-04365 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04365.final.SV.WGS.vcf 150596 VCF 2bee8b5bdc3418dd793f024a60bb4d29 C3L-04365.WGS.T.hg38 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c C3L-04365.WGS.N.hg38 a65d2756-edfd-4640-ac1a-10ef43808513 3368441e-bb73-49c1-8f07-24bacfc51ca2 +C3L-04367 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04367.evidence_0.66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wgs_gdc_realn.bam 62377566 BAM 59af3395577658303086a8b366f62f8e C3L-04367.WGS.T.hg38 1f946dd6-dedf-475d-ba71-f6a6f69b47c4 C3L-04367.WGS.N.hg38 a952e3fe-75bd-458c-9bea-ff26afd66c0f 5c1dc40b-c972-4c5d-95dc-6eae82e366a2 +C3L-04367 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04367.evidence_1.6c67e8c8-b814-4670-be14-4625361e289e_wgs_gdc_realn.bam 61297312 BAM e45e2119e6ad4f4c004be4d26873b715 C3L-04367.WGS.T.hg38 1f946dd6-dedf-475d-ba71-f6a6f69b47c4 C3L-04367.WGS.N.hg38 a952e3fe-75bd-458c-9bea-ff26afd66c0f 5c1dc40b-c972-4c5d-95dc-6eae82e366a2 +C3L-04367 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04367.final.SV.WGS.vcf 179822 VCF d25323d38ac8aa257ebeea519dbd8103 C3L-04367.WGS.T.hg38 1f946dd6-dedf-475d-ba71-f6a6f69b47c4 C3L-04367.WGS.N.hg38 a952e3fe-75bd-458c-9bea-ff26afd66c0f 5c1dc40b-c972-4c5d-95dc-6eae82e366a2 +C3L-04378 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04378.evidence_0.862ce011-5c33-4644-8531-1b57170aa9aa_wgs_gdc_realn.bam 69441365 BAM d24f476b73eeff879c264dc462163dfa C3L-04378.WGS.T.hg38 8b8103d0-513b-4ecc-b879-c7c690b87660 C3L-04378.WGS.N.hg38 442a8e18-cb34-4035-af1c-6dd4be88647c 8e029317-d809-4e94-a5ba-d68ed236a558 +C3L-04378 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04378.evidence_1.996dad95-2c54-4866-9aca-9b5e90775fb7_wgs_gdc_realn.bam 51203443 BAM 1af1e82d91f31758a96c71a25562fd00 C3L-04378.WGS.T.hg38 8b8103d0-513b-4ecc-b879-c7c690b87660 C3L-04378.WGS.N.hg38 442a8e18-cb34-4035-af1c-6dd4be88647c 8e029317-d809-4e94-a5ba-d68ed236a558 +C3L-04378 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04378.final.SV.WGS.vcf 185000 VCF 86a5747c18820bc5c16a0768361e25fd C3L-04378.WGS.T.hg38 8b8103d0-513b-4ecc-b879-c7c690b87660 C3L-04378.WGS.N.hg38 442a8e18-cb34-4035-af1c-6dd4be88647c 8e029317-d809-4e94-a5ba-d68ed236a558 +C3L-04379 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04379.evidence_0.626f0195-bf7f-46f9-8461-8ca13e90aa70_wgs_gdc_realn.bam 47787858 BAM 2b3f2ec291c6d2a19fcab72f8910ba23 C3L-04379.WGS.T.hg38 17fafc2f-bee1-4083-96d3-42a8ad6db92c C3L-04379.WGS.N.hg38 fd240ca7-62df-4822-b84f-556db25e7339 6e9e334f-b1d2-41c5-be93-50346953252e +C3L-04379 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04379.evidence_1.3f41e1ca-98fb-430f-9872-00ab38b27063_wgs_gdc_realn.bam 40814408 BAM 50da183bea6dd65796423eb2ff2bf087 C3L-04379.WGS.T.hg38 17fafc2f-bee1-4083-96d3-42a8ad6db92c C3L-04379.WGS.N.hg38 fd240ca7-62df-4822-b84f-556db25e7339 6e9e334f-b1d2-41c5-be93-50346953252e +C3L-04379 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04379.final.SV.WGS.vcf 157254 VCF 01d3a5581c8a402073a75f73f983e88b C3L-04379.WGS.T.hg38 17fafc2f-bee1-4083-96d3-42a8ad6db92c C3L-04379.WGS.N.hg38 fd240ca7-62df-4822-b84f-556db25e7339 6e9e334f-b1d2-41c5-be93-50346953252e C3L-04391 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3L-04391.final.SV.WGS.vcf 152828 VCF 1ef6bac29adaa67f1390e4bd101039fe C3L-04391.WGS.T.hg38 0693edc4-6418-4abd-a114-d378f88dd700 C3L-04391.WGS.N.hg38 d22a2984-330a-4fda-b33b-85c32cd191ea +C3L-04392 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-04392.evidence_0.ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 52600768 BAM 3bf7267aec8575b8e43eaa3ea3d7c1d1 C3L-04392.WGS.T.hg38 aa97d6a5-ecfe-4536-8f34-dc07208769eb C3L-04392.WGS.N.hg38 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 1e2d13e3-7366-4a36-8ed3-4faf4a8cee64 +C3L-04392 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-04392.evidence_1.156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wgs_gdc_realn.bam 56443122 BAM a0cf4f08ef83a19e717c54eb6b984c84 C3L-04392.WGS.T.hg38 aa97d6a5-ecfe-4536-8f34-dc07208769eb C3L-04392.WGS.N.hg38 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 1e2d13e3-7366-4a36-8ed3-4faf4a8cee64 +C3L-04392 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-04392.final.SV.WGS.vcf 195702 VCF 9f5f2b3865175b90f22cdb2455756aae C3L-04392.WGS.T.hg38 aa97d6a5-ecfe-4536-8f34-dc07208769eb C3L-04392.WGS.N.hg38 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 1e2d13e3-7366-4a36-8ed3-4faf4a8cee64 +C3L-04402 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04402.evidence_0.4dc3a96a-b762-4a23-b6ba-38791790b86b_wgs_gdc_realn.bam 62815734 BAM b33db10ab957b3e2af02fe0c33b3b485 C3L-04402.WGS.T.hg38 eb602344-26fb-4aa6-a33f-82fd9b19b04f C3L-04402.WGS.N.hg38 8f8f6dc0-542c-4b18-8264-62c54578599c ebea779f-bb55-4d76-a13e-b37926da7e69 +C3L-04402 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04402.evidence_1.04193e63-80b9-4eeb-862e-6f78b23a3103_wgs_gdc_realn.bam 43688281 BAM 375696ca73e040074d1bffb5fa676e83 C3L-04402.WGS.T.hg38 eb602344-26fb-4aa6-a33f-82fd9b19b04f C3L-04402.WGS.N.hg38 8f8f6dc0-542c-4b18-8264-62c54578599c ebea779f-bb55-4d76-a13e-b37926da7e69 +C3L-04402 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04402.final.SV.WGS.vcf 153958 VCF 9bd668aad42eb2d15c5dbcb45f592570 C3L-04402.WGS.T.hg38 eb602344-26fb-4aa6-a33f-82fd9b19b04f C3L-04402.WGS.N.hg38 8f8f6dc0-542c-4b18-8264-62c54578599c ebea779f-bb55-4d76-a13e-b37926da7e69 +C3L-04404 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04404.evidence_0.c2b9b16d-31c2-4824-bea8-127c4e3184ad_wgs_gdc_realn.bam 70030020 BAM 29fe67da1ca037a881697607095b1939 C3L-04404.WGS.T.hg38 8aff48b1-a9d7-4250-86d9-f8e23f58b1a6 C3L-04404.WGS.N.hg38 f31033d4-9f98-4c28-abec-417846bf4ec5 b1fad0b9-5e06-448c-8806-540e46785746 +C3L-04404 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04404.evidence_1.118c8acc-4317-4f49-8349-d5cb8d9bf837_wgs_gdc_realn.bam 59222869 BAM 129ac95e75a98f238a7cb7735c9f26fd C3L-04404.WGS.T.hg38 8aff48b1-a9d7-4250-86d9-f8e23f58b1a6 C3L-04404.WGS.N.hg38 f31033d4-9f98-4c28-abec-417846bf4ec5 b1fad0b9-5e06-448c-8806-540e46785746 +C3L-04404 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04404.final.SV.WGS.vcf 184116 VCF 9972e7fdb7456aa78a5c0b0ab8469cc2 C3L-04404.WGS.T.hg38 8aff48b1-a9d7-4250-86d9-f8e23f58b1a6 C3L-04404.WGS.N.hg38 f31033d4-9f98-4c28-abec-417846bf4ec5 b1fad0b9-5e06-448c-8806-540e46785746 +C3L-04408 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04408.evidence_0.f74707b1-70dd-42ca-90f2-acae0b761eed_wgs_gdc_realn.bam 60793681 BAM 06d7833f0c92530f0bd40453aac29dbc C3L-04408.WGS.T.hg38 1193c011-222b-4e7c-bc97-30d6a39d344b C3L-04408.WGS.N.hg38 ab0d9bba-a79f-42d5-b891-fd83ea48ee87 60ec4ea4-1afd-4fcd-b5b8-ef8d618346e8 +C3L-04408 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04408.evidence_1.d8122677-3787-48ef-9182-08b6a6a0d32a_wgs_gdc_realn.bam 46073489 BAM 1599c413cab43c421208c97e3cef9756 C3L-04408.WGS.T.hg38 1193c011-222b-4e7c-bc97-30d6a39d344b C3L-04408.WGS.N.hg38 ab0d9bba-a79f-42d5-b891-fd83ea48ee87 60ec4ea4-1afd-4fcd-b5b8-ef8d618346e8 +C3L-04408 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04408.final.SV.WGS.vcf 146022 VCF 76206a05be298ceccf56987bfda62690 C3L-04408.WGS.T.hg38 1193c011-222b-4e7c-bc97-30d6a39d344b C3L-04408.WGS.N.hg38 ab0d9bba-a79f-42d5-b891-fd83ea48ee87 60ec4ea4-1afd-4fcd-b5b8-ef8d618346e8 +C3L-04409 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04409.evidence_0.0cbade83-4b62-4a62-8cff-6a43e26ec405_wgs_gdc_realn.bam 65921465 BAM 4299d73daa5d35d0ea243d03a7f735a9 C3L-04409.WGS.T.hg38 c9198356-c57b-442b-ae1c-246bb941236a C3L-04409.WGS.N.hg38 fca9b34d-230b-4cea-8541-c74075b3c378 c2e80318-ad68-4b59-9102-b4d1575bf04d +C3L-04409 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04409.evidence_1.0355f102-39d4-45dd-b8fe-5882fa1b3f65_wgs_gdc_realn.bam 51680045 BAM 9185dadd0d726a68a062fd4b857c82ec C3L-04409.WGS.T.hg38 c9198356-c57b-442b-ae1c-246bb941236a C3L-04409.WGS.N.hg38 fca9b34d-230b-4cea-8541-c74075b3c378 c2e80318-ad68-4b59-9102-b4d1575bf04d +C3L-04409 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04409.final.SV.WGS.vcf 144550 VCF 9bcad5b491567fe7095e861ce943e6fa C3L-04409.WGS.T.hg38 c9198356-c57b-442b-ae1c-246bb941236a C3L-04409.WGS.N.hg38 fca9b34d-230b-4cea-8541-c74075b3c378 c2e80318-ad68-4b59-9102-b4d1575bf04d +C3L-04410 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04410.evidence_0.ddaede42-d686-4b86-8706-ec0d5aa1165d_wgs_gdc_realn.bam 57290184 BAM d57064779b4ab4cb10439452628381a0 C3L-04410.WGS.T.hg38 48f97379-47bf-487c-b22a-4881b9570c1d C3L-04410.WGS.N.hg38 51138aec-609f-4285-95d2-8d47f3b7b906 5eeb4ef8-1aaf-4937-8a1a-22539cef6573 +C3L-04410 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04410.evidence_1.32552864-05a8-479f-a894-db75882384c1_wgs_gdc_realn.bam 48890068 BAM a5f0145da57fb81a35fa2c2cda6f5675 C3L-04410.WGS.T.hg38 48f97379-47bf-487c-b22a-4881b9570c1d C3L-04410.WGS.N.hg38 51138aec-609f-4285-95d2-8d47f3b7b906 5eeb4ef8-1aaf-4937-8a1a-22539cef6573 +C3L-04410 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04410.final.SV.WGS.vcf 155173 VCF c2040f048b96852284fdad4f130b0bf8 C3L-04410.WGS.T.hg38 48f97379-47bf-487c-b22a-4881b9570c1d C3L-04410.WGS.N.hg38 51138aec-609f-4285-95d2-8d47f3b7b906 5eeb4ef8-1aaf-4937-8a1a-22539cef6573 C3L-04473 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04473.final.SV.WGS.vcf 149333 VCF 1b801df0dc6815acbee979c4d2f90467 C3L-04473.WGS.T.hg38 ffb2eec6-0b15-452c-b504-90f3899edb47 C3L-04473.WGS.N.hg38 1b7cb28b-6f79-412d-bfb2-a51570017a54 37df4251-f1a4-44c3-b5cb-69a4e8db6086 C3L-04475 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04475.final.SV.WGS.vcf 153517 VCF 87be9f30c5f2c1a6c8d11ea7b56cb451 C3L-04475.WGS.T.hg38 17fc61d6-0f01-45ee-8087-b78de8984763 C3L-04475.WGS.N.hg38 17238a3b-90bd-478b-883f-b61a6aa3bedf e981a423-17ec-4bfe-947f-627f4c3b89ef C3L-04479 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04479.final.SV.WGS.vcf 149536 VCF a1f88f3575a64bd7a4e4208b339c9fa0 C3L-04479.WGS.T.hg38 d193537d-6e11-4a26-bfee-72399c8099fc C3L-04479.WGS.N.hg38 3f8032aa-b17d-408e-b800-fb1716196c0d 1213115c-bd98-4b6a-b154-48c1acc2095f @@ -1253,32 +1313,188 @@ C3L-04537 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3L-04539 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04539.evidence_0.56cd7cd6-c6e0-4a44-90df-b10abcd38233_wgs_gdc_realn.bam 70271243 BAM 09156a77486c661a96266c09c1ae8888 C3L-04539.WGS.T.hg38 340ee94a-a5d8-4417-b332-3d171f38544c C3L-04539.WGS.N.hg38 35697bb3-4b0e-498e-86b8-045a3b37c481 9454dfce-f5de-4525-8d47-a0897be5d701 C3L-04539 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04539.evidence_1.db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wgs_gdc_realn.bam 41032185 BAM 0d598a219e8355df5c6a649624784811 C3L-04539.WGS.T.hg38 340ee94a-a5d8-4417-b332-3d171f38544c C3L-04539.WGS.N.hg38 35697bb3-4b0e-498e-86b8-045a3b37c481 9454dfce-f5de-4525-8d47-a0897be5d701 C3L-04539 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04539.final.SV.WGS.vcf 230734 VCF c486e4ba3bde7444207e1537b59e7705 C3L-04539.WGS.T.hg38 340ee94a-a5d8-4417-b332-3d171f38544c C3L-04539.WGS.N.hg38 35697bb3-4b0e-498e-86b8-045a3b37c481 9454dfce-f5de-4525-8d47-a0897be5d701 +C3L-04728 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04728.evidence_0.89c144d0-e672-49fe-aa42-b3f957230089_wgs_gdc_realn.bam 45946566 BAM be5170388ffb992dbef8373b4b5b6fd3 C3L-04728.WGS.T.hg38 28d030b8-d65f-4e55-be7b-cf10aafbd54b C3L-04728.WGS.N.hg38 6fb14feb-df82-4a97-aa74-fd1c460c89c2 d284aa93-c56c-42d5-942c-4ab328308568 +C3L-04728 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04728.evidence_1.774eea8f-1aca-4b74-b987-b20e71621cda_wgs_gdc_realn.bam 50812329 BAM 3147bf9ad6d060c67bac4e89cbdb6881 C3L-04728.WGS.T.hg38 28d030b8-d65f-4e55-be7b-cf10aafbd54b C3L-04728.WGS.N.hg38 6fb14feb-df82-4a97-aa74-fd1c460c89c2 d284aa93-c56c-42d5-942c-4ab328308568 +C3L-04728 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04728.final.SV.WGS.vcf 174013 VCF 247295a532f97a9016a961643678e125 C3L-04728.WGS.T.hg38 28d030b8-d65f-4e55-be7b-cf10aafbd54b C3L-04728.WGS.N.hg38 6fb14feb-df82-4a97-aa74-fd1c460c89c2 d284aa93-c56c-42d5-942c-4ab328308568 C3L-04731 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04731.evidence_0.580da526-9175-4120-8b85-febc8c389b31_wgs_gdc_realn.bam 42658110 BAM 2a770b520c3b91bb1ccb5bc3361f5d89 C3L-04731.WGS.T.hg38 487eb7fd-571b-4593-b357-bbb90037e3c8 C3L-04731.WGS.N.hg38 d1a5f165-da82-4896-bd87-83d56f133baa 1f18bbdb-ae8a-486a-8c67-01c34d1a4173 C3L-04731 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04731.evidence_1.b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wgs_gdc_realn.bam 43477802 BAM 631b88e36d8a177f7f9ec275f936c858 C3L-04731.WGS.T.hg38 487eb7fd-571b-4593-b357-bbb90037e3c8 C3L-04731.WGS.N.hg38 d1a5f165-da82-4896-bd87-83d56f133baa 1f18bbdb-ae8a-486a-8c67-01c34d1a4173 C3L-04731 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04731.final.SV.WGS.vcf 175496 VCF 06b84e4a2c9a9d318c5f60f4ce708b58 C3L-04731.WGS.T.hg38 487eb7fd-571b-4593-b357-bbb90037e3c8 C3L-04731.WGS.N.hg38 d1a5f165-da82-4896-bd87-83d56f133baa 1f18bbdb-ae8a-486a-8c67-01c34d1a4173 +C3L-04746 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04746.evidence_0.5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wgs_gdc_realn.bam 42930047 BAM 642793a63bcf549bc941cf504845a311 C3L-04746.WGS.T.hg38 801599dd-861c-45b1-8b8a-0796ff39e9a6 C3L-04746.WGS.N.hg38 0935491d-6a06-4602-977e-871773b588a6 448e61b1-fe16-4cad-aae1-4bd015b25ddd +C3L-04746 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04746.evidence_1.7c5f9092-ce2b-4a59-b8ed-f368774e6764_wgs_gdc_realn.bam 49578533 BAM 548c8dd6e074ec8b0e122acd87a0ad89 C3L-04746.WGS.T.hg38 801599dd-861c-45b1-8b8a-0796ff39e9a6 C3L-04746.WGS.N.hg38 0935491d-6a06-4602-977e-871773b588a6 448e61b1-fe16-4cad-aae1-4bd015b25ddd +C3L-04746 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04746.final.SV.WGS.vcf 148592 VCF 3a4ecbdee5ed75ae639272f8b1e1832c C3L-04746.WGS.T.hg38 801599dd-861c-45b1-8b8a-0796ff39e9a6 C3L-04746.WGS.N.hg38 0935491d-6a06-4602-977e-871773b588a6 448e61b1-fe16-4cad-aae1-4bd015b25ddd +C3L-04749 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04749.evidence_0.537b8662-9f16-462d-85f1-2517912d16f0_wgs_gdc_realn.bam 57294480 BAM 8563ab07576eacda624f7be197a7bd87 C3L-04749.WGS.T.hg38 f13d050a-7955-4d6f-82ad-81b11335cdb9 C3L-04749.WGS.N.hg38 948bad93-2b50-452c-bc20-fbaf4d175be2 89f00030-408e-4d8e-aabc-abaa91e207d9 +C3L-04749 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04749.evidence_1.05c2e83b-4061-4cbe-825f-2fb99b325dae_wgs_gdc_realn.bam 53596732 BAM 2d4658370732f7ec36cab25c93b79879 C3L-04749.WGS.T.hg38 f13d050a-7955-4d6f-82ad-81b11335cdb9 C3L-04749.WGS.N.hg38 948bad93-2b50-452c-bc20-fbaf4d175be2 89f00030-408e-4d8e-aabc-abaa91e207d9 +C3L-04749 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04749.final.SV.WGS.vcf 173379 VCF 29fee418f7686a90dc8db90cf4331aeb C3L-04749.WGS.T.hg38 f13d050a-7955-4d6f-82ad-81b11335cdb9 C3L-04749.WGS.N.hg38 948bad93-2b50-452c-bc20-fbaf4d175be2 89f00030-408e-4d8e-aabc-abaa91e207d9 C3L-04757 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04757.evidence_0.1049f508-fe3c-4359-b14a-d38c47dcb7ba_wgs_gdc_realn.bam 51010965 BAM 25bea947ea26052e180e30b9839d6cf5 C3L-04757.WGS.T.hg38 34305f06-2a3d-4e58-9625-3e051b9cb648 C3L-04757.WGS.N.hg38 622c8bbc-4f6e-4368-aad0-015fc56a074c 64336f3a-2332-4f24-b13f-0960814be2d1 C3L-04757 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04757.evidence_1.21adbed6-c6b0-4b46-8a76-bdb0670be9ba_wgs_gdc_realn.bam 47653793 BAM d7b21630aae18b2a5f6c044e9f0fc079 C3L-04757.WGS.T.hg38 34305f06-2a3d-4e58-9625-3e051b9cb648 C3L-04757.WGS.N.hg38 622c8bbc-4f6e-4368-aad0-015fc56a074c 64336f3a-2332-4f24-b13f-0960814be2d1 C3L-04757 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04757.final.SV.WGS.vcf 164715 VCF 3e5bd888ac2a0ecb307224b94ab815cb C3L-04757.WGS.T.hg38 34305f06-2a3d-4e58-9625-3e051b9cb648 C3L-04757.WGS.N.hg38 622c8bbc-4f6e-4368-aad0-015fc56a074c 64336f3a-2332-4f24-b13f-0960814be2d1 C3L-04759 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04759.evidence_0.f0520344-6377-4462-862f-581f5f45a641_wgs_gdc_realn.bam 63628159 BAM 4ebac2bb833f73e03f5211357c4eceaf C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 f189e595-97ac-448e-a334-2a25a89d28f6 C3L-04759 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04759.evidence_1.5fc49ef3-8cdd-493c-846d-23ce0178019a_wgs_gdc_realn.bam 71157500 BAM de605bb030f3cd1c0bf89d6d08836aae C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 f189e595-97ac-448e-a334-2a25a89d28f6 C3L-04759 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04759.final.SV.WGS.vcf 158877 VCF fb24da635626a2d8d6e5e4a279e8e97b C3L-04759.WGS.T.hg38 b257bc19-7dcf-456b-9392-9187805a8af0 C3L-04759.WGS.N.hg38 44924c91-e101-4a04-bb4a-1f386d8ad368 f189e595-97ac-448e-a334-2a25a89d28f6 +C3L-04786 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04786.evidence_0.d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wgs_gdc_realn.bam 49604930 BAM 9323c168de55ed808749989b1018aab9 C3L-04786.WGS.T.hg38 6c11187b-9320-49ed-838d-692f239d9451 C3L-04786.WGS.N.hg38 75496f29-8401-4131-b320-d16cced4737b ee7bb54a-e034-431d-80a0-54d52e523965 +C3L-04786 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04786.evidence_1.3feebd7d-0450-44eb-9c19-f112017bcf12_wgs_gdc_realn.bam 56076948 BAM 081edcd8e89fa3be6e3a03fa7bd9d0b6 C3L-04786.WGS.T.hg38 6c11187b-9320-49ed-838d-692f239d9451 C3L-04786.WGS.N.hg38 75496f29-8401-4131-b320-d16cced4737b ee7bb54a-e034-431d-80a0-54d52e523965 +C3L-04786 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04786.final.SV.WGS.vcf 155970 VCF ff616fc42aa86d0b54488dcd38f95902 C3L-04786.WGS.T.hg38 6c11187b-9320-49ed-838d-692f239d9451 C3L-04786.WGS.N.hg38 75496f29-8401-4131-b320-d16cced4737b ee7bb54a-e034-431d-80a0-54d52e523965 C3L-04791 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3L-04791.final.SV.WGS.vcf 279705 VCF a471e895e47404bb2224d637d750d20d C3L-04791.WGS.T UMich-adhoc-realign C3L-04791.WGS.N UMich-adhoc-realign fe1a6164-1cb6-49cd-b032-be2b14997bfa +C3L-04792 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04792.evidence_0.d58e9015-53d6-4a74-b3dc-55c27acd8016_wgs_gdc_realn.bam 57169665 BAM d9c4a3d5beb9e6c45c350f36078adfc3 C3L-04792.WGS.T.hg38 e4ba2471-cdc0-4ac0-ad6c-d63174dfa996 C3L-04792.WGS.N.hg38 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c e023c6e4-cd53-4d6e-9093-b9668b7a4ea1 +C3L-04792 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04792.evidence_1.d283d472-cff8-47b2-835d-2888bf62bb3c_wgs_gdc_realn.bam 57038071 BAM eca4bf0a2142959c993cf0847ce5029f C3L-04792.WGS.T.hg38 e4ba2471-cdc0-4ac0-ad6c-d63174dfa996 C3L-04792.WGS.N.hg38 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c e023c6e4-cd53-4d6e-9093-b9668b7a4ea1 +C3L-04792 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04792.final.SV.WGS.vcf 180301 VCF 2cc06585b6b04b66ae4aa1ffa01f90b4 C3L-04792.WGS.T.hg38 e4ba2471-cdc0-4ac0-ad6c-d63174dfa996 C3L-04792.WGS.N.hg38 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c e023c6e4-cd53-4d6e-9093-b9668b7a4ea1 C3L-04795 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04795.evidence_0.66331f85-ba28-4eb8-9df1-60a3cd38d91a_wgs_gdc_realn.bam 34619922 BAM 46fbec197973da6417b8542ceb3a8277 C3L-04795.WGS.T.hg38 10d0d280-5380-4979-84b9-54470cf8aae8 C3L-04795.WGS.N.hg38 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 5ed51cea-b255-4cb3-876b-67ce384b47cc C3L-04795 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04795.evidence_1.376e0e57-4948-421b-a670-e310f4072910_wgs_gdc_realn.bam 64281448 BAM 3db3aa411c52ec68f7acd931aaee9f38 C3L-04795.WGS.T.hg38 10d0d280-5380-4979-84b9-54470cf8aae8 C3L-04795.WGS.N.hg38 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 5ed51cea-b255-4cb3-876b-67ce384b47cc C3L-04795 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3L-04795.final.SV.WGS.vcf 402504 VCF 0a95091cc4c3735675c8351facdc59ab C3L-04795.WGS.T.hg38 10d0d280-5380-4979-84b9-54470cf8aae8 C3L-04795.WGS.N.hg38 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 5ed51cea-b255-4cb3-876b-67ce384b47cc +C3L-04804 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04804.evidence_0.94c1986f-de49-4808-92d5-59f1854e9cab_wgs_gdc_realn.bam 53988975 BAM b5aabe42fb06c35ba5d2652bbd4d2fdb C3L-04804.WGS.T.hg38 c30c30ef-66ac-4d2c-8328-73abf63e57bd C3L-04804.WGS.N.hg38 39910c35-c8c1-48ac-bace-b2628f125c54 b29d4e4a-cd1a-4dc3-bf13-fa7a4e67def3 +C3L-04804 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04804.evidence_1.31f213b0-bb8d-4681-b436-da192eedc9df_wgs_gdc_realn.bam 59324283 BAM fcdc14255e3304ba7ebaac7904408724 C3L-04804.WGS.T.hg38 c30c30ef-66ac-4d2c-8328-73abf63e57bd C3L-04804.WGS.N.hg38 39910c35-c8c1-48ac-bace-b2628f125c54 b29d4e4a-cd1a-4dc3-bf13-fa7a4e67def3 +C3L-04804 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04804.final.SV.WGS.vcf 176824 VCF a94742f91b6009865ec6538cc40f97ef C3L-04804.WGS.T.hg38 c30c30ef-66ac-4d2c-8328-73abf63e57bd C3L-04804.WGS.N.hg38 39910c35-c8c1-48ac-bace-b2628f125c54 b29d4e4a-cd1a-4dc3-bf13-fa7a4e67def3 +C3L-04808 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04808.evidence_0.c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wgs_gdc_realn.bam 39930648 BAM a7bacba7e45f27a16797e77f12424f60 C3L-04808.WGS.T.hg38 59d4d215-4562-4cab-b497-130d60b73149 C3L-04808.WGS.N.hg38 a78e3b98-6eae-4067-858e-c2a3835b7b21 6029016c-f528-4c57-bdde-bf02d08ae8db +C3L-04808 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04808.evidence_1.d9661c5a-e609-4b7a-8ddf-03ee137c8ab6_wgs_gdc_realn.bam 47753911 BAM c7944e1fe43884ba587ec4971b42af57 C3L-04808.WGS.T.hg38 59d4d215-4562-4cab-b497-130d60b73149 C3L-04808.WGS.N.hg38 a78e3b98-6eae-4067-858e-c2a3835b7b21 6029016c-f528-4c57-bdde-bf02d08ae8db +C3L-04808 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04808.final.SV.WGS.vcf 217209 VCF f805524bf0ab45579700758ca6552df7 C3L-04808.WGS.T.hg38 59d4d215-4562-4cab-b497-130d60b73149 C3L-04808.WGS.N.hg38 a78e3b98-6eae-4067-858e-c2a3835b7b21 6029016c-f528-4c57-bdde-bf02d08ae8db C3L-04844 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3L-04844.final.SV.WGS.vcf 358658 VCF fbdc8a73dbb976323ec45258ae2034ef C3L-04844.WGS.T UMich-adhoc-realign C3L-04844.WGS.N UMich-adhoc-realign 2ba3f396-7501-49cd-83c4-7f2cf8738ec7 C3L-04848 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04848.final.SV.WGS.vcf 153119 VCF 83feb4bcbec4103a944fec6bf2643c90 C3L-04848.WGS.T.hg38 e606f1b4-42de-4cdd-9c07-68c710282420 C3L-04848.WGS.N.hg38 9af855cd-317f-4fc4-b229-f24227fce90f ec04ad88-ae40-462b-9faa-26f9b982000d C3L-04849 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3L-04849.final.SV.WGS.vcf 381133 VCF 0db981c036038cd3811a2ce12526e925 C3L-04849.WGS.T UMich-adhoc-realign C3L-04849.WGS.N UMich-adhoc-realign 9808ef89-71d1-4907-aa9b-a57b495a37e7 C3L-04853 PDA WGS_SV v1.1 20200618 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_WGS_SV_v1.1_WGS_SV.PDA_89_20200618/C3L-04853.final.SV.WGS.vcf 154827 VCF f50f2170b7e60ea9e0ed8eb7f70d184c C3L-04853.WGS.T.hg38 b55e752a-e1d0-4ac8-8d6d-c28b1ee96967 C3L-04853.WGS.N.hg38 048bd256-f280-4b1b-96f6-c3c55614fa35 4f691277-d7d8-4ec1-b266-e6508ce17063 +C3L-04854 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04854.evidence_0.d6b4852d-f75b-437d-9a33-41f25cad0437_wgs_gdc_realn.bam 46760561 BAM 4a216d7afd09354948ccd824d8f3c0ae C3L-04854.WGS.T.hg38 8724bd37-e8e2-4f2f-b8e9-ef1912d56040 C3L-04854.WGS.N.hg38 4e87e15b-8d04-47e2-a208-34ad0ecedaed 51d89981-4c01-4618-8bc6-010c54130e84 +C3L-04854 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04854.evidence_1.e5c108a5-8b09-4dd6-9273-e5da4f818bf7_wgs_gdc_realn.bam 56422598 BAM bb7e9c6f02df5d86caf4d5e3253fc225 C3L-04854.WGS.T.hg38 8724bd37-e8e2-4f2f-b8e9-ef1912d56040 C3L-04854.WGS.N.hg38 4e87e15b-8d04-47e2-a208-34ad0ecedaed 51d89981-4c01-4618-8bc6-010c54130e84 +C3L-04854 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04854.final.SV.WGS.vcf 173196 VCF da2bff437767b72a55196eade58f9a72 C3L-04854.WGS.T.hg38 8724bd37-e8e2-4f2f-b8e9-ef1912d56040 C3L-04854.WGS.N.hg38 4e87e15b-8d04-47e2-a208-34ad0ecedaed 51d89981-4c01-4618-8bc6-010c54130e84 +C3L-04856 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04856.evidence_0.6aef6afc-a1f6-4f73-978f-39455316c95a_wgs_gdc_realn.bam 54957060 BAM 8dffaafaf57c740444a57a03dd880a69 C3L-04856.WGS.T.hg38 910050cb-db5c-462d-83df-055da02b27a4 C3L-04856.WGS.N.hg38 7cda4212-99fa-42df-937b-7eb1e7f90ad3 024b0eb7-df88-4d52-8493-8afa19a71bfe +C3L-04856 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04856.evidence_1.efa93229-0fa2-44fb-8ff0-71219ba65905_wgs_gdc_realn.bam 56528420 BAM 5af632fd53ef13365b715c1c029485ef C3L-04856.WGS.T.hg38 910050cb-db5c-462d-83df-055da02b27a4 C3L-04856.WGS.N.hg38 7cda4212-99fa-42df-937b-7eb1e7f90ad3 024b0eb7-df88-4d52-8493-8afa19a71bfe +C3L-04856 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04856.final.SV.WGS.vcf 181174 VCF a0690346a0fb3afad2051e670e53c80c C3L-04856.WGS.T.hg38 910050cb-db5c-462d-83df-055da02b27a4 C3L-04856.WGS.N.hg38 7cda4212-99fa-42df-937b-7eb1e7f90ad3 024b0eb7-df88-4d52-8493-8afa19a71bfe +C3L-04861 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04861.evidence_0.587a77b0-d172-490c-991d-1c6fdcb4c093_wgs_gdc_realn.bam 68233192 BAM 5288b1e15f58f5f35f8a5acc13d0ac77 C3L-04861.WGS.T.hg38 fa24097d-6c63-4b2e-8c7c-aeee3b72050b C3L-04861.WGS.N.hg38 189d7b19-780a-4bcc-ab76-aa8fc677b27b 11c596e4-fcd4-4546-89e1-d5614c9897e7 +C3L-04861 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04861.evidence_1.a70a2f42-2ae8-48b7-bb9e-db2dfe15c8c4_wgs_gdc_realn.bam 55174666 BAM e89799eef36709f543b126db8d001ade C3L-04861.WGS.T.hg38 fa24097d-6c63-4b2e-8c7c-aeee3b72050b C3L-04861.WGS.N.hg38 189d7b19-780a-4bcc-ab76-aa8fc677b27b 11c596e4-fcd4-4546-89e1-d5614c9897e7 +C3L-04861 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04861.final.SV.WGS.vcf 191172 VCF 8d60050da459eefa6ab37f06f29194eb C3L-04861.WGS.T.hg38 fa24097d-6c63-4b2e-8c7c-aeee3b72050b C3L-04861.WGS.N.hg38 189d7b19-780a-4bcc-ab76-aa8fc677b27b 11c596e4-fcd4-4546-89e1-d5614c9897e7 +C3L-04866 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04866.evidence_0.70bb1e58-a17c-4f61-b263-94f490da2e9c_wgs_gdc_realn.bam 58994400 BAM 7016134f5d5ce5ee1ad7989b1dfe700d C3L-04866.WGS.T.hg38 56041f11-39a5-4bad-b4c8-76cdbe79669f C3L-04866.WGS.N.hg38 f11a5195-8153-43a1-ba5b-681000d65a1c 2415ca3e-b1c6-4e0f-9c6b-0a173e410a3e +C3L-04866 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04866.evidence_1.9bf9f218-3b59-4645-8b74-292e13639580_wgs_gdc_realn.bam 46449030 BAM b8676da9036e932ebd9151dc8376d836 C3L-04866.WGS.T.hg38 56041f11-39a5-4bad-b4c8-76cdbe79669f C3L-04866.WGS.N.hg38 f11a5195-8153-43a1-ba5b-681000d65a1c 2415ca3e-b1c6-4e0f-9c6b-0a173e410a3e +C3L-04866 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04866.final.SV.WGS.vcf 168440 VCF 2f9f123efe8792448cf5da04966b72a4 C3L-04866.WGS.T.hg38 56041f11-39a5-4bad-b4c8-76cdbe79669f C3L-04866.WGS.N.hg38 f11a5195-8153-43a1-ba5b-681000d65a1c 2415ca3e-b1c6-4e0f-9c6b-0a173e410a3e +C3L-04868 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04868.evidence_0.391d5226-dbaa-4631-961b-cc74dfb50e18_wgs_gdc_realn.bam 50361342 BAM 72f6c93d27b8fe3d1952e07eb8bdbcbe C3L-04868.WGS.T.hg38 be8f3dad-edd3-4543-8f20-ed43e68d8186 C3L-04868.WGS.N.hg38 ddc24ca0-210e-492c-bd82-a8896da3c6a1 728136c1-0282-4f6c-ba45-49fa8666d8f1 +C3L-04868 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04868.evidence_1.43603349-f8cc-43ba-b8ce-6c6662369372_wgs_gdc_realn.bam 48604509 BAM 039e6d14801250c042277ed55be1ca82 C3L-04868.WGS.T.hg38 be8f3dad-edd3-4543-8f20-ed43e68d8186 C3L-04868.WGS.N.hg38 ddc24ca0-210e-492c-bd82-a8896da3c6a1 728136c1-0282-4f6c-ba45-49fa8666d8f1 +C3L-04868 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04868.final.SV.WGS.vcf 178002 VCF a94b81aca933fbe63699c4f99b1a6e88 C3L-04868.WGS.T.hg38 be8f3dad-edd3-4543-8f20-ed43e68d8186 C3L-04868.WGS.N.hg38 ddc24ca0-210e-492c-bd82-a8896da3c6a1 728136c1-0282-4f6c-ba45-49fa8666d8f1 +C3L-04871 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04871.evidence_0.a2db28ad-4a19-4289-bb64-24390da5be1e_wgs_gdc_realn.bam 60258682 BAM cd57af4dc2cea1939c96753cd2c133e8 C3L-04871.WGS.T.hg38 002259e0-1438-474e-9b3b-ecda15bfd01f C3L-04871.WGS.N.hg38 e78b9def-1b4a-4c79-a3bf-0408441713a6 e060142c-0bd8-48a3-9ec2-93ad2b2ea11a +C3L-04871 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04871.evidence_1.066c9bba-638b-4ffe-85ff-363bfd12f2de_wgs_gdc_realn.bam 60415489 BAM 3e2e26d6876518f93ce5ced8caa7afa4 C3L-04871.WGS.T.hg38 002259e0-1438-474e-9b3b-ecda15bfd01f C3L-04871.WGS.N.hg38 e78b9def-1b4a-4c79-a3bf-0408441713a6 e060142c-0bd8-48a3-9ec2-93ad2b2ea11a +C3L-04871 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04871.final.SV.WGS.vcf 160374 VCF e82c3232602eaf4d0e8b0eceb92889fe C3L-04871.WGS.T.hg38 002259e0-1438-474e-9b3b-ecda15bfd01f C3L-04871.WGS.N.hg38 e78b9def-1b4a-4c79-a3bf-0408441713a6 e060142c-0bd8-48a3-9ec2-93ad2b2ea11a +C3L-04872 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04872.evidence_0.684ec18f-3d8f-4bfd-88d9-264ebaf87fa4_wgs_gdc_realn.bam 84415857 BAM dad65a4db02c08fcc0e0a9c2f4e3e934 C3L-04872.WGS.T.hg38 3e40b43b-5757-40d7-a5a2-02210f457a40 C3L-04872.WGS.N.hg38 1833b881-3ebe-46be-adfe-bffa4185cddf f61a1faa-aa19-406d-952e-66cdaf58587d +C3L-04872 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04872.evidence_1.36c2492a-a296-4bff-9e6e-3e00aae2dc2b_wgs_gdc_realn.bam 58948913 BAM e3bb32f42ebfc843aa5a9938d18a0568 C3L-04872.WGS.T.hg38 3e40b43b-5757-40d7-a5a2-02210f457a40 C3L-04872.WGS.N.hg38 1833b881-3ebe-46be-adfe-bffa4185cddf f61a1faa-aa19-406d-952e-66cdaf58587d +C3L-04872 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04872.final.SV.WGS.vcf 200371 VCF 6dc939d144020350fe394187598d7db7 C3L-04872.WGS.T.hg38 3e40b43b-5757-40d7-a5a2-02210f457a40 C3L-04872.WGS.N.hg38 1833b881-3ebe-46be-adfe-bffa4185cddf f61a1faa-aa19-406d-952e-66cdaf58587d +C3L-04873 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04873.evidence_0.82f03f91-8421-4e4c-a257-2bde3ae9ec4a_wgs_gdc_realn.bam 64077687 BAM 3f0a7b79b2f92c3059ce295392098ee3 C3L-04873.WGS.T.hg38 aff9f748-72c3-45fe-b67b-aac0fdcb92e4 C3L-04873.WGS.N.hg38 273c5dee-0424-4279-9eb2-fdd9b5b6d9ec 7c5400b3-18fd-47e1-8dce-e527b3326218 +C3L-04873 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04873.evidence_1.04f1ed3d-fb02-4257-ac35-bb8607019cce_wgs_gdc_realn.bam 54113094 BAM b87c5fcbd604ba9b41237f5693f88276 C3L-04873.WGS.T.hg38 aff9f748-72c3-45fe-b67b-aac0fdcb92e4 C3L-04873.WGS.N.hg38 273c5dee-0424-4279-9eb2-fdd9b5b6d9ec 7c5400b3-18fd-47e1-8dce-e527b3326218 +C3L-04873 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04873.final.SV.WGS.vcf 212330 VCF 7b9e456acde8998888a0dc98fa484469 C3L-04873.WGS.T.hg38 aff9f748-72c3-45fe-b67b-aac0fdcb92e4 C3L-04873.WGS.N.hg38 273c5dee-0424-4279-9eb2-fdd9b5b6d9ec 7c5400b3-18fd-47e1-8dce-e527b3326218 +C3L-04874 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04874.evidence_0.953cc737-9263-4e67-be03-67fe6d20bb08_wgs_gdc_realn.bam 64818557 BAM 47ba421705abf42f73c93a359cec511c C3L-04874.WGS.T.hg38 09d88d3e-7e17-4371-b1f6-0f9627d89f4f C3L-04874.WGS.N.hg38 a3c24b09-97d6-4f8e-a53a-08976f7312a7 7c32c849-a837-4304-b5a3-a5fb710e9761 +C3L-04874 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04874.evidence_1.4d122972-e702-4224-9825-9d97013cac46_wgs_gdc_realn.bam 58221996 BAM 677d53942fc46db043de43030778aaf8 C3L-04874.WGS.T.hg38 09d88d3e-7e17-4371-b1f6-0f9627d89f4f C3L-04874.WGS.N.hg38 a3c24b09-97d6-4f8e-a53a-08976f7312a7 7c32c849-a837-4304-b5a3-a5fb710e9761 +C3L-04874 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04874.final.SV.WGS.vcf 184562 VCF 6b33eb557473e19ea9cccf4ad86ba58f C3L-04874.WGS.T.hg38 09d88d3e-7e17-4371-b1f6-0f9627d89f4f C3L-04874.WGS.N.hg38 a3c24b09-97d6-4f8e-a53a-08976f7312a7 7c32c849-a837-4304-b5a3-a5fb710e9761 +C3L-04878 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04878.evidence_0.9a24adbe-9814-4111-ad5c-be83ee688559_wgs_gdc_realn.bam 61328073 BAM 477a1c31b1cf869e35c3233dfe9776a3 C3L-04878.WGS.T.hg38 8adc8708-db6d-4478-8f6c-220011c1e560 C3L-04878.WGS.N.hg38 5d3c329c-f915-45fd-9d44-ab657947b05a 2ec711cd-e0b1-4062-81fa-989c657e411d +C3L-04878 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04878.evidence_1.6ece0a12-2fd2-48ca-bbce-14090dded31d_wgs_gdc_realn.bam 100023395 BAM 30c5608c3fd5b1f9db7679291613a012 C3L-04878.WGS.T.hg38 8adc8708-db6d-4478-8f6c-220011c1e560 C3L-04878.WGS.N.hg38 5d3c329c-f915-45fd-9d44-ab657947b05a 2ec711cd-e0b1-4062-81fa-989c657e411d +C3L-04878 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04878.final.SV.WGS.vcf 193242 VCF d367340506fd8f8d6e6a1d3891f97018 C3L-04878.WGS.T.hg38 8adc8708-db6d-4478-8f6c-220011c1e560 C3L-04878.WGS.N.hg38 5d3c329c-f915-45fd-9d44-ab657947b05a 2ec711cd-e0b1-4062-81fa-989c657e411d +C3L-04880 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04880.evidence_0.aedbe9f5-5a65-4d32-9583-36c12c019c25_wgs_gdc_realn.bam 58512701 BAM ad498d908ea09f349b626c3de9c57ee0 C3L-04880.WGS.T.hg38 d9d7bc96-f9b4-49f1-bc4c-a86f23e562de C3L-04880.WGS.N.hg38 4b24c115-f177-402c-9301-cd422a5aad9a c89bd1fe-1299-4d2b-bbb9-d1c332a69c4d +C3L-04880 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04880.evidence_1.4fb41834-716f-4c81-a12e-ec631bd9757e_wgs_gdc_realn.bam 42530418 BAM 079c6d6529263787f0aaff919784386d C3L-04880.WGS.T.hg38 d9d7bc96-f9b4-49f1-bc4c-a86f23e562de C3L-04880.WGS.N.hg38 4b24c115-f177-402c-9301-cd422a5aad9a c89bd1fe-1299-4d2b-bbb9-d1c332a69c4d +C3L-04880 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04880.final.SV.WGS.vcf 149714 VCF 8f474240dfdd737278607b617124ab7f C3L-04880.WGS.T.hg38 d9d7bc96-f9b4-49f1-bc4c-a86f23e562de C3L-04880.WGS.N.hg38 4b24c115-f177-402c-9301-cd422a5aad9a c89bd1fe-1299-4d2b-bbb9-d1c332a69c4d +C3L-04883 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04883.evidence_0.a759674b-f5b7-4d18-8019-f1538c01206c_wgs_gdc_realn.bam 57548693 BAM 9c67b2825a1a13fe8854399263f9b414 C3L-04883.WGS.T.hg38 824af069-89df-4627-8a57-5a5b826430aa C3L-04883.WGS.N.hg38 8edd72ad-d390-4eac-b045-89c157968bcb d5dbe2ab-80b6-4e9f-b048-f4dd1bf294b9 +C3L-04883 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04883.evidence_1.3aa9b82b-f84c-4726-b2b4-ada4bf65547c_wgs_gdc_realn.bam 61923100 BAM 5bc968cc6a634d56c32cf052e13954e2 C3L-04883.WGS.T.hg38 824af069-89df-4627-8a57-5a5b826430aa C3L-04883.WGS.N.hg38 8edd72ad-d390-4eac-b045-89c157968bcb d5dbe2ab-80b6-4e9f-b048-f4dd1bf294b9 +C3L-04883 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04883.final.SV.WGS.vcf 147463 VCF b173a13ab4cdb47ae133ecf6166da6a8 C3L-04883.WGS.T.hg38 824af069-89df-4627-8a57-5a5b826430aa C3L-04883.WGS.N.hg38 8edd72ad-d390-4eac-b045-89c157968bcb d5dbe2ab-80b6-4e9f-b048-f4dd1bf294b9 +C3L-04887 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04887.evidence_0.5cffaff7-c587-4952-84c9-a4f0b8fe5baf_wgs_gdc_realn.bam 71405104 BAM 1c3ae2f606185f516bf57ac8ed89a16b C3L-04887.WGS.T.hg38 bc592ed5-c7b8-4882-bd0e-d13a78aed20d C3L-04887.WGS.N.hg38 e49949ea-616f-43c1-9c7b-977d869cad50 c23d3d60-2189-40da-ab7e-fd2988f5c313 +C3L-04887 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04887.evidence_1.0651482e-849b-42f0-9be2-ca88eee9c2a3_wgs_gdc_realn.bam 66767016 BAM 396a450225a404e47cb1ab0132bf7dbe C3L-04887.WGS.T.hg38 bc592ed5-c7b8-4882-bd0e-d13a78aed20d C3L-04887.WGS.N.hg38 e49949ea-616f-43c1-9c7b-977d869cad50 c23d3d60-2189-40da-ab7e-fd2988f5c313 +C3L-04887 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04887.final.SV.WGS.vcf 223016 VCF 2a5e0cc59fab4ebaf78a64f235b05230 C3L-04887.WGS.T.hg38 bc592ed5-c7b8-4882-bd0e-d13a78aed20d C3L-04887.WGS.N.hg38 e49949ea-616f-43c1-9c7b-977d869cad50 c23d3d60-2189-40da-ab7e-fd2988f5c313 +C3L-04888 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04888.evidence_0.4fb6deda-0533-4e32-9ccb-5e10d36c9ff1_wgs_gdc_realn.bam 63877017 BAM f87e2db71f971ff3e5d5dfc1343cad70 C3L-04888.WGS.T.hg38 15c27f47-6aef-4abd-adaa-12766157c472 C3L-04888.WGS.N.hg38 fc9b8c98-999c-4644-8658-7bb34c36513b a95aaccf-9548-4d6f-8cb8-0f257bcbbdeb +C3L-04888 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04888.evidence_1.c3b26a8b-5ea1-40f1-97c6-b5a07db8d558_wgs_gdc_realn.bam 70160976 BAM bf7789aecd25dfa026049663c18b4561 C3L-04888.WGS.T.hg38 15c27f47-6aef-4abd-adaa-12766157c472 C3L-04888.WGS.N.hg38 fc9b8c98-999c-4644-8658-7bb34c36513b a95aaccf-9548-4d6f-8cb8-0f257bcbbdeb +C3L-04888 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04888.final.SV.WGS.vcf 173584 VCF 7a9c3bf8943a2ec77de192d871cd82ce C3L-04888.WGS.T.hg38 15c27f47-6aef-4abd-adaa-12766157c472 C3L-04888.WGS.N.hg38 fc9b8c98-999c-4644-8658-7bb34c36513b a95aaccf-9548-4d6f-8cb8-0f257bcbbdeb +C3L-04889 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04889.evidence_0.a53c2467-4e6f-4d84-a6b8-5c26eca640ca_wgs_gdc_realn.bam 57752897 BAM 9ea7b827775b57884738574e3631f278 C3L-04889.WGS.T.hg38 247ecd00-dc1d-4d7f-815b-d53768c379b0 C3L-04889.WGS.N.hg38 d5a6e3b7-70c9-49fa-a2a1-66a924932a1f 807518f6-0257-4714-8c45-53d1070c9c35 +C3L-04889 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04889.evidence_1.4bfb9da1-f676-4dbd-b71a-ef9a54bf2bb8_wgs_gdc_realn.bam 50784056 BAM c76f4db073183fa2e4d553092ca198e3 C3L-04889.WGS.T.hg38 247ecd00-dc1d-4d7f-815b-d53768c379b0 C3L-04889.WGS.N.hg38 d5a6e3b7-70c9-49fa-a2a1-66a924932a1f 807518f6-0257-4714-8c45-53d1070c9c35 +C3L-04889 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04889.final.SV.WGS.vcf 151551 VCF 7d86fb9f59dbeb27ccc622aad9a809d3 C3L-04889.WGS.T.hg38 247ecd00-dc1d-4d7f-815b-d53768c379b0 C3L-04889.WGS.N.hg38 d5a6e3b7-70c9-49fa-a2a1-66a924932a1f 807518f6-0257-4714-8c45-53d1070c9c35 +C3L-04912 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04912.evidence_0.00c8e708-0b26-4993-a88c-77f89ee28cff_wgs_gdc_realn.bam 69668486 BAM d1c180e164826f7033f9ee40d1351746 C3L-04912.WGS.T.hg38 9e2f0f6f-9196-435a-ace9-917e80e5f254 C3L-04912.WGS.N.hg38 7bcb216f-65c8-426f-8151-d03834b16ccb b32ac4f6-99ce-49dd-b48b-5c8f46897c49 +C3L-04912 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04912.evidence_1.1acb5add-1160-4bcb-8121-aad43a85ae38_wgs_gdc_realn.bam 55596480 BAM ddff9706370abbc44278046bc73b10e0 C3L-04912.WGS.T.hg38 9e2f0f6f-9196-435a-ace9-917e80e5f254 C3L-04912.WGS.N.hg38 7bcb216f-65c8-426f-8151-d03834b16ccb b32ac4f6-99ce-49dd-b48b-5c8f46897c49 +C3L-04912 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04912.final.SV.WGS.vcf 160535 VCF 275c9c0236ef78d0fcfdcc8a71670603 C3L-04912.WGS.T.hg38 9e2f0f6f-9196-435a-ace9-917e80e5f254 C3L-04912.WGS.N.hg38 7bcb216f-65c8-426f-8151-d03834b16ccb b32ac4f6-99ce-49dd-b48b-5c8f46897c49 +C3L-04916 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04916.evidence_0.19045df1-920b-4394-9a2c-7efac1afdbce_wgs_gdc_realn.bam 63503376 BAM 7ad6d4d7a3bf11d254fc928f8b9f595c C3L-04916.WGS.T.hg38 d7cd46cd-09c5-4e20-9e40-bc70e8caaf92 C3L-04916.WGS.N.hg38 0c3c18a9-693d-4d7c-811e-43a69ccb9861 61820122-b210-4d36-9580-b2a37ca3f4b4 +C3L-04916 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04916.evidence_1.fd157e5a-efff-4dbc-9fcb-41a6355a4016_wgs_gdc_realn.bam 48427998 BAM 2b34eba72fd6a35876793c12e5c16860 C3L-04916.WGS.T.hg38 d7cd46cd-09c5-4e20-9e40-bc70e8caaf92 C3L-04916.WGS.N.hg38 0c3c18a9-693d-4d7c-811e-43a69ccb9861 61820122-b210-4d36-9580-b2a37ca3f4b4 +C3L-04916 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04916.final.SV.WGS.vcf 145340 VCF 6980d4097a681628c4be37de53e8cfdb C3L-04916.WGS.T.hg38 d7cd46cd-09c5-4e20-9e40-bc70e8caaf92 C3L-04916.WGS.N.hg38 0c3c18a9-693d-4d7c-811e-43a69ccb9861 61820122-b210-4d36-9580-b2a37ca3f4b4 +C3L-04921 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04921.evidence_0.bc1c32a3-372a-45bf-a6bd-1374ff7922fb_wgs_gdc_realn.bam 51887993 BAM c05393f83a53ad24a43a72836027f5b1 C3L-04921.WGS.T.hg38 4344ed3f-54ff-422a-8362-6ecbc704951b C3L-04921.WGS.N.hg38 e666531d-597f-4ea1-8ebb-96f4d3cc4ade 6f894535-f278-4592-9dbe-a13687149c9c +C3L-04921 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04921.evidence_1.2437fa18-5a93-4db0-b3ae-08396dc784d9_wgs_gdc_realn.bam 62935813 BAM bded7882ca0dade3003a0f15ad755f51 C3L-04921.WGS.T.hg38 4344ed3f-54ff-422a-8362-6ecbc704951b C3L-04921.WGS.N.hg38 e666531d-597f-4ea1-8ebb-96f4d3cc4ade 6f894535-f278-4592-9dbe-a13687149c9c +C3L-04921 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04921.final.SV.WGS.vcf 164922 VCF c629f8f3ccb84ff89bce7c43ed81c5bc C3L-04921.WGS.T.hg38 4344ed3f-54ff-422a-8362-6ecbc704951b C3L-04921.WGS.N.hg38 e666531d-597f-4ea1-8ebb-96f4d3cc4ade 6f894535-f278-4592-9dbe-a13687149c9c +C3L-04922 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04922.evidence_0.23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wgs_gdc_realn.bam 67855510 BAM 79964a1085ca378e3f209d7ba8740551 C3L-04922.WGS.T.hg38 d3898ded-3f45-4fd3-bb20-c7a9e84aebf6 C3L-04922.WGS.N.hg38 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 fb565baf-78c8-41ac-b00d-a1a4052ba47a +C3L-04922 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04922.evidence_1.d0cab13b-f2df-4901-97cd-7a8556661410_wgs_gdc_realn.bam 56414802 BAM 887622ee51d9b207f6465a337eb0cec2 C3L-04922.WGS.T.hg38 d3898ded-3f45-4fd3-bb20-c7a9e84aebf6 C3L-04922.WGS.N.hg38 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 fb565baf-78c8-41ac-b00d-a1a4052ba47a +C3L-04922 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-04922.final.SV.WGS.vcf 146022 VCF b8e50f85064b4b10bd637080f5dafdf8 C3L-04922.WGS.T.hg38 d3898ded-3f45-4fd3-bb20-c7a9e84aebf6 C3L-04922.WGS.N.hg38 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 fb565baf-78c8-41ac-b00d-a1a4052ba47a +C3L-05020 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05020.evidence_0.9a5e7de2-a3e2-4837-b944-c4f71db5be2f_wgs_gdc_realn.bam 58671929 BAM 3ef9cac2be370a78a7878fcc99ff0195 C3L-05020.WGS.T.hg38 701a8e2f-d44a-4890-b736-125d2e8792ee C3L-05020.WGS.N.hg38 82895603-0b17-4f96-b192-987c98e5be51 4ee648f2-4804-4e8a-8020-484a96fa9f26 +C3L-05020 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05020.evidence_1.816c3a90-a426-4ad7-947b-b338d7b7d45d_wgs_gdc_realn.bam 56636115 BAM 88b4ea10043276c3e46e6888a3497c97 C3L-05020.WGS.T.hg38 701a8e2f-d44a-4890-b736-125d2e8792ee C3L-05020.WGS.N.hg38 82895603-0b17-4f96-b192-987c98e5be51 4ee648f2-4804-4e8a-8020-484a96fa9f26 +C3L-05020 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05020.final.SV.WGS.vcf 150592 VCF 436c8232c369ffabe5818ec8912cff80 C3L-05020.WGS.T.hg38 701a8e2f-d44a-4890-b736-125d2e8792ee C3L-05020.WGS.N.hg38 82895603-0b17-4f96-b192-987c98e5be51 4ee648f2-4804-4e8a-8020-484a96fa9f26 +C3L-05022 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05022.evidence_0.bfb047a9-b14c-4ede-9c1b-79978ee288f4_wgs_gdc_realn.bam 58163322 BAM 5c02031c47cc6dbfe435cfb5dba83f2a C3L-05022.WGS.T.hg38 4e7a6847-796d-48c9-88e6-e620fe1a0ace C3L-05022.WGS.N.hg38 e06ef31f-a018-4db4-9f1b-b160bd3d0533 2e407cf9-ac92-4338-9f93-b0df8fee8cd6 +C3L-05022 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05022.evidence_1.b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wgs_gdc_realn.bam 63426346 BAM de2bcb8378851145145dd0ac75ec2018 C3L-05022.WGS.T.hg38 4e7a6847-796d-48c9-88e6-e620fe1a0ace C3L-05022.WGS.N.hg38 e06ef31f-a018-4db4-9f1b-b160bd3d0533 2e407cf9-ac92-4338-9f93-b0df8fee8cd6 +C3L-05022 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05022.final.SV.WGS.vcf 185061 VCF 23e2046524d799393b1a5224247d7751 C3L-05022.WGS.T.hg38 4e7a6847-796d-48c9-88e6-e620fe1a0ace C3L-05022.WGS.N.hg38 e06ef31f-a018-4db4-9f1b-b160bd3d0533 2e407cf9-ac92-4338-9f93-b0df8fee8cd6 +C3L-05145 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05145.evidence_0.876141d5-19d4-4daf-9415-07d0edb645da_wgs_gdc_realn.bam 73376790 BAM 982e3268d3ce91b0f53b2b39237a7ee1 C3L-05145.WGS.T.hg38 6eb74828-fb73-4de6-968c-833bc1f06b38 C3L-05145.WGS.N.hg38 13daaafc-c444-40ce-b023-af39bd2306a2 cd119802-e266-406a-9918-dadef0e8a357 +C3L-05145 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05145.evidence_1.01ccd04c-f42e-4b22-a3a3-c54dcbad40cc_wgs_gdc_realn.bam 61811864 BAM 37c088427668acd8425e58f520b11249 C3L-05145.WGS.T.hg38 6eb74828-fb73-4de6-968c-833bc1f06b38 C3L-05145.WGS.N.hg38 13daaafc-c444-40ce-b023-af39bd2306a2 cd119802-e266-406a-9918-dadef0e8a357 +C3L-05145 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05145.final.SV.WGS.vcf 145540 VCF 40e384867d3edf75054680db31e57cf6 C3L-05145.WGS.T.hg38 6eb74828-fb73-4de6-968c-833bc1f06b38 C3L-05145.WGS.N.hg38 13daaafc-c444-40ce-b023-af39bd2306a2 cd119802-e266-406a-9918-dadef0e8a357 +C3L-05148 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05148.evidence_0.ab27f25f-6b76-4a14-be5a-4897d759a848_wgs_gdc_realn.bam 67574940 BAM 61a55f6bdced4a49d1c8d25151c58ed0 C3L-05148.WGS.T.hg38 8addce24-cadb-40bf-9a5a-7171feaf5dd3 C3L-05148.WGS.N.hg38 99d55ea8-dde2-427d-9e42-1f122702d349 b980e4c7-af05-4536-a798-742a490087eb +C3L-05148 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05148.evidence_1.fd7fff26-2c02-43f1-b56f-81fccd132dbc_wgs_gdc_realn.bam 50095731 BAM dd1d59257d02c6d42dd3f53a13d8e207 C3L-05148.WGS.T.hg38 8addce24-cadb-40bf-9a5a-7171feaf5dd3 C3L-05148.WGS.N.hg38 99d55ea8-dde2-427d-9e42-1f122702d349 b980e4c7-af05-4536-a798-742a490087eb +C3L-05148 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05148.final.SV.WGS.vcf 216052 VCF 6493d20ba4eb647b7c46116dd7daa91a C3L-05148.WGS.T.hg38 8addce24-cadb-40bf-9a5a-7171feaf5dd3 C3L-05148.WGS.N.hg38 99d55ea8-dde2-427d-9e42-1f122702d349 b980e4c7-af05-4536-a798-742a490087eb +C3L-05150 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05150.evidence_0.70f3bcdb-e8fd-4054-b659-dfa5e4def710_wgs_gdc_realn.bam 55649767 BAM 3216c2f641c99cbb49f24c6c84767283 C3L-05150.WGS.T.hg38 62869dd2-c112-46cb-9fea-79204061f30a C3L-05150.WGS.N.hg38 0cc84dab-4866-4121-aac6-08c250d8727a 3c425d99-e4cc-4a1f-9ec0-77267ed6b306 +C3L-05150 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05150.evidence_1.1645ce61-f1b1-4d70-b60f-ef20b644bf3e_wgs_gdc_realn.bam 65742459 BAM 4f7f10a2d486029b63bc7a21435959b5 C3L-05150.WGS.T.hg38 62869dd2-c112-46cb-9fea-79204061f30a C3L-05150.WGS.N.hg38 0cc84dab-4866-4121-aac6-08c250d8727a 3c425d99-e4cc-4a1f-9ec0-77267ed6b306 +C3L-05150 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05150.final.SV.WGS.vcf 158992 VCF 888af7943053778db31c5b6321ea94ed C3L-05150.WGS.T.hg38 62869dd2-c112-46cb-9fea-79204061f30a C3L-05150.WGS.N.hg38 0cc84dab-4866-4121-aac6-08c250d8727a 3c425d99-e4cc-4a1f-9ec0-77267ed6b306 +C3L-05172 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05172.evidence_0.b9fc8052-a489-40d8-a755-bfb51c9fb52e_wgs_gdc_realn.bam 51547125 BAM 1a961e8dee433c6c062272614fa5ab39 C3L-05172.WGS.T.hg38 c15bd281-e096-402a-9482-44882e3eef7f C3L-05172.WGS.N.hg38 68752f3f-4795-4299-ab31-8ad5af5ae616 2c039c8e-a672-4b47-a969-2840d382f08e +C3L-05172 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05172.evidence_1.0a416131-f6b7-460a-9591-ef8ffe154266_wgs_gdc_realn.bam 56943881 BAM 6fe619879cec08d801a6e46f7957b3c8 C3L-05172.WGS.T.hg38 c15bd281-e096-402a-9482-44882e3eef7f C3L-05172.WGS.N.hg38 68752f3f-4795-4299-ab31-8ad5af5ae616 2c039c8e-a672-4b47-a969-2840d382f08e +C3L-05172 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05172.final.SV.WGS.vcf 153146 VCF 568d184a5c11eb46b492559e4435289c C3L-05172.WGS.T.hg38 c15bd281-e096-402a-9482-44882e3eef7f C3L-05172.WGS.N.hg38 68752f3f-4795-4299-ab31-8ad5af5ae616 2c039c8e-a672-4b47-a969-2840d382f08e +C3L-05176 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05176.evidence_0.264ca255-c027-4787-a706-2a38e4fe0aac_wgs_gdc_realn.bam 69104580 BAM 970ef5ab0a66109cfd51c913c46757c4 C3L-05176.WGS.T.hg38 c0c48786-513b-4ad2-838d-21269fa48404 C3L-05176.WGS.N.hg38 0b6ccfaf-52b0-4cf5-a8ce-3511b17f0065 5002923f-e1fb-4e4e-844e-1627039322af +C3L-05176 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05176.evidence_1.7132ca08-c95c-4cd9-83b7-3cf6bfbfa2cf_wgs_gdc_realn.bam 54575200 BAM b3cb93b2a210d12f832a8d768c35c80f C3L-05176.WGS.T.hg38 c0c48786-513b-4ad2-838d-21269fa48404 C3L-05176.WGS.N.hg38 0b6ccfaf-52b0-4cf5-a8ce-3511b17f0065 5002923f-e1fb-4e4e-844e-1627039322af +C3L-05176 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05176.final.SV.WGS.vcf 145017 VCF b5382c2d29d233c62a0d47d545364c48 C3L-05176.WGS.T.hg38 c0c48786-513b-4ad2-838d-21269fa48404 C3L-05176.WGS.N.hg38 0b6ccfaf-52b0-4cf5-a8ce-3511b17f0065 5002923f-e1fb-4e4e-844e-1627039322af +C3L-05212 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05212.evidence_0.bf747777-536e-4fc9-bac9-e55b29857ab1_wgs_gdc_realn.bam 45569168 BAM 31987855f07fd32cdb6abb2d24c6c7bd C3L-05212.WGS.T.hg38 cab17baa-cddb-4a5b-8112-f12d52e71b88 C3L-05212.WGS.N.hg38 730b7bba-f95b-41c5-9280-824de58d9c4d 07688da7-a157-4c3e-b759-697e33f24dff +C3L-05212 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05212.evidence_1.437c43df-b54f-4e38-adbb-0d6f941261a0_wgs_gdc_realn.bam 38712803 BAM 054d07b88335b7a48f72e34b43574620 C3L-05212.WGS.T.hg38 cab17baa-cddb-4a5b-8112-f12d52e71b88 C3L-05212.WGS.N.hg38 730b7bba-f95b-41c5-9280-824de58d9c4d 07688da7-a157-4c3e-b759-697e33f24dff +C3L-05212 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05212.final.SV.WGS.vcf 177926 VCF a6673a05e018931dd213fdd20ef6e3e6 C3L-05212.WGS.T.hg38 cab17baa-cddb-4a5b-8112-f12d52e71b88 C3L-05212.WGS.N.hg38 730b7bba-f95b-41c5-9280-824de58d9c4d 07688da7-a157-4c3e-b759-697e33f24dff +C3L-05221 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05221.evidence_0.7efd2357-2f36-4670-a8ab-4ec4a050505c_wgs_gdc_realn.bam 48893083 BAM c6892b2cce0d17aba50bc45ac4fa1de9 C3L-05221.WGS.T.hg38 72499411-41a2-4232-a610-13c98262b69e C3L-05221.WGS.N.hg38 bc4fff91-13c2-4c76-b669-6f556586d88e 2f1920e0-43ba-4f97-93d3-46794b6fe4db +C3L-05221 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05221.evidence_1.9bce91ec-f097-488c-9886-3163d276fbb8_wgs_gdc_realn.bam 51588000 BAM 8e6b746683910b6f7abdde21d4992acc C3L-05221.WGS.T.hg38 72499411-41a2-4232-a610-13c98262b69e C3L-05221.WGS.N.hg38 bc4fff91-13c2-4c76-b669-6f556586d88e 2f1920e0-43ba-4f97-93d3-46794b6fe4db +C3L-05221 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05221.final.SV.WGS.vcf 159109 VCF 65c1e68f23d1d8b4dbcd35792c1e0343 C3L-05221.WGS.T.hg38 72499411-41a2-4232-a610-13c98262b69e C3L-05221.WGS.N.hg38 bc4fff91-13c2-4c76-b669-6f556586d88e 2f1920e0-43ba-4f97-93d3-46794b6fe4db +C3L-05225 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05225.evidence_0.3b73345c-6a2e-4042-8cc9-0e55329d9058_wgs_gdc_realn.bam 52818791 BAM c55f551b4b85a93ebd39fceadb8dff9e C3L-05225.WGS.T.hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 C3L-05225.WGS.N.hg38 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 14862738-ba41-44de-a093-c012a7a752e5 +C3L-05225 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05225.evidence_1.81cdcf02-73f2-42cc-9306-818c9c6869ae_wgs_gdc_realn.bam 51269239 BAM 8b553b1a7ee17aef72b4c2ed8a1a29bb C3L-05225.WGS.T.hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 C3L-05225.WGS.N.hg38 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 14862738-ba41-44de-a093-c012a7a752e5 +C3L-05225 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05225.final.SV.WGS.vcf 194027 VCF 0894fe846c922690da823b9fc6c2a964 C3L-05225.WGS.T.hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 C3L-05225.WGS.N.hg38 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 14862738-ba41-44de-a093-c012a7a752e5 +C3L-05239 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-05239.evidence_0.445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 54875444 BAM bb386a6931793a0c14de8fb89ba5bee3 C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 47ea8530-4511-4ab4-af64-6d3936303101 +C3L-05239 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-05239.evidence_1.7afb0ddf-9395-4033-a349-4d98081ffbe8_wgs_gdc_realn.bam 50135645 BAM ffb718e19a4f1384d28dead752c1a7ac C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 47ea8530-4511-4ab4-af64-6d3936303101 +C3L-05239 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3L-05239.final.SV.WGS.vcf 162323 VCF 15f1fd72a20f055563096d5f9686398c C3L-05239.WGS.T.hg38 ec7424a2-cc70-4745-8abf-830399c53864 C3L-05239.WGS.N.hg38 74558bd0-2f33-412a-acc6-0274e7abf989 47ea8530-4511-4ab4-af64-6d3936303101 +C3L-05369 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05369.evidence_0.60330a1e-b890-4080-b328-a426cc600b86_wgs_gdc_realn.bam 53279060 BAM 6c244a00a260e52bd5f5f87903ea8dc4 C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 92fb4f49-c045-4518-b45a-13b64608b166 +C3L-05369 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05369.evidence_1.d9f0103e-5df7-4f8e-a564-57886f38b001_wgs_gdc_realn.bam 55267563 BAM 4e7efbbee8d2a73b7a59d37f373cd36e C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 92fb4f49-c045-4518-b45a-13b64608b166 +C3L-05369 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05369.final.SV.WGS.vcf 163784 VCF 5f6071c794105340ec46e81ef35706a3 C3L-05369.WGS.T.hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e C3L-05369.WGS.N.hg38 fd313034-153a-492c-9e39-5991db231b8b 92fb4f49-c045-4518-b45a-13b64608b166 +C3L-05392 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05392.evidence_0.74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wgs_gdc_realn.bam 54466248 BAM 8b8b1e6fc44a64234ad93fe8abacaca9 C3L-05392.WGS.T.hg38 309533ab-d9a0-45eb-af78-d80eca0bcd5f C3L-05392.WGS.N.hg38 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 57865da6-114e-4d3b-a85c-c9421c77b4f3 +C3L-05392 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05392.evidence_1.345fba5f-2345-40ab-9d42-ffd0a47db599_wgs_gdc_realn.bam 50315700 BAM cfb23ffc65ef2ed26e633ca2b0a7f400 C3L-05392.WGS.T.hg38 309533ab-d9a0-45eb-af78-d80eca0bcd5f C3L-05392.WGS.N.hg38 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 57865da6-114e-4d3b-a85c-c9421c77b4f3 +C3L-05392 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05392.final.SV.WGS.vcf 172158 VCF eb52135b575df24fd91ca06bef5c83ed C3L-05392.WGS.T.hg38 309533ab-d9a0-45eb-af78-d80eca0bcd5f C3L-05392.WGS.N.hg38 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 57865da6-114e-4d3b-a85c-c9421c77b4f3 +C3L-05393 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05393.evidence_0.7269aee9-f189-4c9a-b48d-1425ee35e613_wgs_gdc_realn.bam 84700162 BAM 59058706a732317a4f7ff3f36ed1e387 C3L-05393.WGS.T.hg38 33ef5b1e-3163-41e2-b8f3-056172b5e654 C3L-05393.WGS.N.hg38 59b8c0b8-7499-4bd3-b267-17d81f32b6b5 92defe60-30ff-4da7-b2f6-07ada8f7d1bf +C3L-05393 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05393.evidence_1.07739423-62a4-4b10-a9ce-de37a40ece88_wgs_gdc_realn.bam 59876664 BAM 6ea44493c065308fc389ef7ae9d0c1c4 C3L-05393.WGS.T.hg38 33ef5b1e-3163-41e2-b8f3-056172b5e654 C3L-05393.WGS.N.hg38 59b8c0b8-7499-4bd3-b267-17d81f32b6b5 92defe60-30ff-4da7-b2f6-07ada8f7d1bf +C3L-05393 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05393.final.SV.WGS.vcf 195058 VCF 59b90891bcfd7d7ea18c3be1d1dc4d81 C3L-05393.WGS.T.hg38 33ef5b1e-3163-41e2-b8f3-056172b5e654 C3L-05393.WGS.N.hg38 59b8c0b8-7499-4bd3-b267-17d81f32b6b5 92defe60-30ff-4da7-b2f6-07ada8f7d1bf +C3L-05394 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05394.evidence_0.9b3dd1c0-f10d-41a8-8dfd-3a069eb847ce_wgs_gdc_realn.bam 64440503 BAM 92c5d14ee1f423ebe907df8e8eb41edf C3L-05394.WGS.T.hg38 a02b7815-fd4e-4a5c-b42a-3d4e5bb59346 C3L-05394.WGS.N.hg38 b5981ecb-e6bb-4c3b-aaf1-2cac92483bf8 d4728f64-1cb6-4567-a4c0-9ecf0a5868df +C3L-05394 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05394.evidence_1.72bc503d-d1c6-443a-a983-db1eb773c3d6_wgs_gdc_realn.bam 52934341 BAM c684f4edb503a21e237b4ef0385b865a C3L-05394.WGS.T.hg38 a02b7815-fd4e-4a5c-b42a-3d4e5bb59346 C3L-05394.WGS.N.hg38 b5981ecb-e6bb-4c3b-aaf1-2cac92483bf8 d4728f64-1cb6-4567-a4c0-9ecf0a5868df +C3L-05394 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05394.final.SV.WGS.vcf 211080 VCF addf3dfc4466531e92537675263129d4 C3L-05394.WGS.T.hg38 a02b7815-fd4e-4a5c-b42a-3d4e5bb59346 C3L-05394.WGS.N.hg38 b5981ecb-e6bb-4c3b-aaf1-2cac92483bf8 d4728f64-1cb6-4567-a4c0-9ecf0a5868df +C3L-05397 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05397.evidence_0.b722d6b5-e10d-4dc5-8cbf-4aacdcfbb671_wgs_gdc_realn.bam 45428265 BAM 135727ea290f76dc70d25f0db482e7cb C3L-05397.WGS.T.hg38 286bfa90-9947-4972-9dd2-f0a5fe7734b4 C3L-05397.WGS.N.hg38 051ce0e0-be4e-4962-b5e0-6ec0e635ea84 3ce39e14-00e1-49f2-bbe1-6d552765cfe7 +C3L-05397 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05397.evidence_1.4bf7649f-7956-4173-a0b0-ba1eff0a0d4c_wgs_gdc_realn.bam 52230410 BAM 3b59c65cd966edbe053a80b922e97c18 C3L-05397.WGS.T.hg38 286bfa90-9947-4972-9dd2-f0a5fe7734b4 C3L-05397.WGS.N.hg38 051ce0e0-be4e-4962-b5e0-6ec0e635ea84 3ce39e14-00e1-49f2-bbe1-6d552765cfe7 +C3L-05397 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05397.final.SV.WGS.vcf 216352 VCF c8c86a6b1f71ee9a576566acd74b27d8 C3L-05397.WGS.T.hg38 286bfa90-9947-4972-9dd2-f0a5fe7734b4 C3L-05397.WGS.N.hg38 051ce0e0-be4e-4962-b5e0-6ec0e635ea84 3ce39e14-00e1-49f2-bbe1-6d552765cfe7 +C3L-05398 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05398.evidence_0.b2d4cbfa-fc45-4f6c-b41d-675846d7c828_wgs_gdc_realn.bam 50885999 BAM ecaa9e2dde431c1143aa3f59fd7e0f6e C3L-05398.WGS.T.hg38 34bb8109-aeb8-45f9-8f6a-c9e0236979ef C3L-05398.WGS.N.hg38 f3085b9f-ee54-42e0-8e81-374a8cdbee7a dccdcfd4-72a8-46dd-b3e9-5bee5c25f2f9 +C3L-05398 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05398.evidence_1.fc6dcae6-aad0-4bef-a15f-59401c7f1c04_wgs_gdc_realn.bam 78424667 BAM e49863b444cec33c05d29d458a2b8c45 C3L-05398.WGS.T.hg38 34bb8109-aeb8-45f9-8f6a-c9e0236979ef C3L-05398.WGS.N.hg38 f3085b9f-ee54-42e0-8e81-374a8cdbee7a dccdcfd4-72a8-46dd-b3e9-5bee5c25f2f9 +C3L-05398 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05398.final.SV.WGS.vcf 211454 VCF f9b8a82e099eb36cf6c0096a44b90207 C3L-05398.WGS.T.hg38 34bb8109-aeb8-45f9-8f6a-c9e0236979ef C3L-05398.WGS.N.hg38 f3085b9f-ee54-42e0-8e81-374a8cdbee7a dccdcfd4-72a8-46dd-b3e9-5bee5c25f2f9 +C3L-05399 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05399.evidence_0.b7a0ca13-78c2-4771-a5ed-4cf45eeb5b64_wgs_gdc_realn.bam 63675784 BAM cb36b0395aeec9ac47b0087c519940ab C3L-05399.WGS.T.hg38 85ba706e-0a65-4b72-ac67-50864ea65870 C3L-05399.WGS.N.hg38 dd68a938-11e8-40d0-b712-e83bde34b0bf cad276fa-8063-491e-bb20-b0a30dc2b006 +C3L-05399 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05399.evidence_1.c2f89f93-a3b2-468e-b80c-a997cbb57d30_wgs_gdc_realn.bam 66119936 BAM d5b89857172251326e66f3578ae5256f C3L-05399.WGS.T.hg38 85ba706e-0a65-4b72-ac67-50864ea65870 C3L-05399.WGS.N.hg38 dd68a938-11e8-40d0-b712-e83bde34b0bf cad276fa-8063-491e-bb20-b0a30dc2b006 +C3L-05399 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05399.final.SV.WGS.vcf 188241 VCF d35a0afe3b63325a83a00e324ec9ad3c C3L-05399.WGS.T.hg38 85ba706e-0a65-4b72-ac67-50864ea65870 C3L-05399.WGS.N.hg38 dd68a938-11e8-40d0-b712-e83bde34b0bf cad276fa-8063-491e-bb20-b0a30dc2b006 +C3L-05417 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05417.evidence_0.e23f6a2d-a1b0-4d06-8422-e974a789d4c9_wgs_gdc_realn.bam 73859072 BAM 1776e8cb50449d0ca2c82b56b979a08c C3L-05417.WGS.T.hg38 ae569a6e-4c00-49af-b9cb-523c4af30ba9 C3L-05417.WGS.N.hg38 de2db24a-2b8b-46a0-80dd-d624854d697b 3bf3540c-cb65-4bed-88cf-4ba6a6f30bec +C3L-05417 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05417.evidence_1.216d2dbb-6bc1-4860-ab70-6fe360188711_wgs_gdc_realn.bam 53176594 BAM 424d4157bf6871e3e6ad7d0dbe4ca296 C3L-05417.WGS.T.hg38 ae569a6e-4c00-49af-b9cb-523c4af30ba9 C3L-05417.WGS.N.hg38 de2db24a-2b8b-46a0-80dd-d624854d697b 3bf3540c-cb65-4bed-88cf-4ba6a6f30bec +C3L-05417 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05417.final.SV.WGS.vcf 189052 VCF 80a76164c11a75ce5ed92c3221bc47b4 C3L-05417.WGS.T.hg38 ae569a6e-4c00-49af-b9cb-523c4af30ba9 C3L-05417.WGS.N.hg38 de2db24a-2b8b-46a0-80dd-d624854d697b 3bf3540c-cb65-4bed-88cf-4ba6a6f30bec +C3L-05420 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05420.evidence_0.1a3a6a41-a4d3-4b76-9184-5cede7fcb0bf_wgs_gdc_realn.bam 63386640 BAM 3491894a16cdffd6076d36b0bed039f3 C3L-05420.WGS.T.hg38 c3dfec9d-0f22-434f-82ce-08a0a919146f C3L-05420.WGS.N.hg38 eb81c000-0d62-401f-83f3-6bebe143f74f 93c56ebb-bf63-4a75-ad5a-0d6560a76383 +C3L-05420 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05420.evidence_1.7d038235-f19b-4a5c-9fff-f7fd27f8acbb_wgs_gdc_realn.bam 50310090 BAM bcdd398adcd25ca31e6fb6da7ce60b18 C3L-05420.WGS.T.hg38 c3dfec9d-0f22-434f-82ce-08a0a919146f C3L-05420.WGS.N.hg38 eb81c000-0d62-401f-83f3-6bebe143f74f 93c56ebb-bf63-4a75-ad5a-0d6560a76383 +C3L-05420 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05420.final.SV.WGS.vcf 150914 VCF 00aefa04268119eada51331372b2da60 C3L-05420.WGS.T.hg38 c3dfec9d-0f22-434f-82ce-08a0a919146f C3L-05420.WGS.N.hg38 eb81c000-0d62-401f-83f3-6bebe143f74f 93c56ebb-bf63-4a75-ad5a-0d6560a76383 +C3L-05422 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05422.evidence_0.58dbf06a-1bc2-493f-905b-956771ec2bc8_wgs_gdc_realn.bam 40629418 BAM 60dec3dba1ea67ad8a3c727801f001c5 C3L-05422.WGS.T.hg38 2f28496f-496d-4306-a731-b78675e1c6f5 C3L-05422.WGS.N.hg38 493be082-54f7-41a0-b48b-8282e4c88bcd 41b6e420-ec57-47f0-95d8-140d29f55e2f +C3L-05422 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05422.evidence_1.e1adca1b-d3ed-4a3c-9461-ba555f6dc9d5_wgs_gdc_realn.bam 43977957 BAM 6ab67d6d2f822b404d26cba0bb087664 C3L-05422.WGS.T.hg38 2f28496f-496d-4306-a731-b78675e1c6f5 C3L-05422.WGS.N.hg38 493be082-54f7-41a0-b48b-8282e4c88bcd 41b6e420-ec57-47f0-95d8-140d29f55e2f +C3L-05422 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05422.final.SV.WGS.vcf 195544 VCF ce88509cfa66c95c42399155218ec088 C3L-05422.WGS.T.hg38 2f28496f-496d-4306-a731-b78675e1c6f5 C3L-05422.WGS.N.hg38 493be082-54f7-41a0-b48b-8282e4c88bcd 41b6e420-ec57-47f0-95d8-140d29f55e2f +C3L-05423 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05423.evidence_0.473dfbc7-4094-4cb5-9f0e-152bdcc320d3_wgs_gdc_realn.bam 51445119 BAM d39f46164af2873c09684b73373bf985 C3L-05423.WGS.T.hg38 0ea222ee-5ab4-4e63-8bfa-71829ea50d62 C3L-05423.WGS.N.hg38 2168c0d3-9223-43d5-8288-7580f45353be 9687a71a-f34c-478b-a963-e8a8584017b0 +C3L-05423 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05423.evidence_1.8f8f8717-6151-4224-99ce-d7b74db7fe3e_wgs_gdc_realn.bam 52720923 BAM db79e8d62b18032dea557138b4d68478 C3L-05423.WGS.T.hg38 0ea222ee-5ab4-4e63-8bfa-71829ea50d62 C3L-05423.WGS.N.hg38 2168c0d3-9223-43d5-8288-7580f45353be 9687a71a-f34c-478b-a963-e8a8584017b0 +C3L-05423 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05423.final.SV.WGS.vcf 161005 VCF 35bc3130a3808d120919b4a2c9c37054 C3L-05423.WGS.T.hg38 0ea222ee-5ab4-4e63-8bfa-71829ea50d62 C3L-05423.WGS.N.hg38 2168c0d3-9223-43d5-8288-7580f45353be 9687a71a-f34c-478b-a963-e8a8584017b0 +C3L-05427 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05427.evidence_0.e5dcd75a-3cd2-41b2-8297-a1fce506b09a_wgs_gdc_realn.bam 81065455 BAM 75d5f69fa61a09850401acf6127ad4f5 C3L-05427.WGS.T.hg38 4329ac2a-b1af-4698-9bc5-8cf6776181b4 C3L-05427.WGS.N.hg38 28017ff1-f4d8-485f-b4fd-a52523420749 9a76fce9-f7ce-412c-bf92-5c73ab1ca96a +C3L-05427 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05427.evidence_1.9a304621-e269-441a-97e1-ada9ebee23ab_wgs_gdc_realn.bam 68575123 BAM 3fe6633ada3f2a0650e7702478dc215c C3L-05427.WGS.T.hg38 4329ac2a-b1af-4698-9bc5-8cf6776181b4 C3L-05427.WGS.N.hg38 28017ff1-f4d8-485f-b4fd-a52523420749 9a76fce9-f7ce-412c-bf92-5c73ab1ca96a +C3L-05427 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05427.final.SV.WGS.vcf 156790 VCF a22213912d56d8e31bfaa73c536f156e C3L-05427.WGS.T.hg38 4329ac2a-b1af-4698-9bc5-8cf6776181b4 C3L-05427.WGS.N.hg38 28017ff1-f4d8-485f-b4fd-a52523420749 9a76fce9-f7ce-412c-bf92-5c73ab1ca96a +C3L-05428 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05428.evidence_0.dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wgs_gdc_realn.bam 57807658 BAM 9ce055c7f7e15335c9800edab95500a3 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 79e715c8-5e5e-40a0-8fa1-fdeb46649b18 +C3L-05428 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05428.evidence_1.d15d106b-64ab-4e62-a0f3-dd22920946b7_wgs_gdc_realn.bam 53223882 BAM e1fdb5ef2370dd8fa99d552ac67ff3e5 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 79e715c8-5e5e-40a0-8fa1-fdeb46649b18 +C3L-05428 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05428.final.SV.WGS.vcf 153689 VCF 836cd208f4033a909336f4e6cbb027e0 C3L-05428.WGS.T.hg38 30a31e54-8637-431b-ad11-88efc4c79940 C3L-05428.WGS.N.hg38 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 79e715c8-5e5e-40a0-8fa1-fdeb46649b18 C3L-05571 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05571.evidence_0.2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wgs_gdc_realn.bam 48638719 BAM 225a46d9b8a6894f5f465f9b57d1ccd6 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 386f384c-4ea4-4a4d-9610-0458493884f8 C3L-05571 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05571.evidence_1.63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wgs_gdc_realn.bam 51065759 BAM 3abf72b245ed459032223e787e5cd0b7 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 386f384c-4ea4-4a4d-9610-0458493884f8 C3L-05571 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05571.final.SV.WGS.vcf 184073 VCF a9ba0df93fe642832ea9cf402003e960 C3L-05571.WGS.T.hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d C3L-05571.WGS.N.hg38 04fe5225-2758-4691-b709-934aa7656050 386f384c-4ea4-4a4d-9610-0458493884f8 +C3L-05693 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05693.evidence_0.75cf68ed-fd4e-4592-b25c-85c9263a2adb_wgs_gdc_realn.bam 46913918 BAM 139d65e0c3162581631441c9331b8207 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 107967e3-6fe6-4d46-bbcc-bd0e7311d646 +C3L-05693 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05693.evidence_1.7fde45f8-250d-45d1-827c-9f5313c7e614_wgs_gdc_realn.bam 43117341 BAM fe97111e320a759b208972d75b42e0f7 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 107967e3-6fe6-4d46-bbcc-bd0e7311d646 +C3L-05693 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-05693.final.SV.WGS.vcf 197240 VCF 7db41200e2764991930a7e047fdc7303 C3L-05693.WGS.T.hg38 86f6ff64-28d1-4a9a-a636-7510c36b6fca C3L-05693.WGS.N.hg38 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 107967e3-6fe6-4d46-bbcc-bd0e7311d646 C3L-05848 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05848.evidence_0.7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wgs_gdc_realn.bam 39496626 BAM dc87e4fed5b828e3ec9719677d80d527 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 bc4b34df-893b-42b4-94f1-90ee7387dd74 C3L-05848 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05848.evidence_1.4371e677-059d-4c39-9ec3-fdbad29b064e_wgs_gdc_realn.bam 46868971 BAM f51c8c190b301c01490cd04da66b9702 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 bc4b34df-893b-42b4-94f1-90ee7387dd74 C3L-05848 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05848.final.SV.WGS.vcf 194416 VCF e9966f8c167a992ff14021a6caf52230 C3L-05848.WGS.T.hg38 11884c29-689e-4c70-adfb-9490351d8c07 C3L-05848.WGS.N.hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 bc4b34df-893b-42b4-94f1-90ee7387dd74 C3L-05849 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05849.evidence_0.138f530d-492b-4fc7-aba2-be1c9dc10174_wgs_gdc_realn.bam 36209695 BAM 90534011ff428c3f6e2326aba9b9561d C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 89d7c272-240d-4c3a-9757-fa2753ce3ef3 C3L-05849 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05849.evidence_1.6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wgs_gdc_realn.bam 43226663 BAM 4f9ab3830ac6124ec1566b4568b9fcc7 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 89d7c272-240d-4c3a-9757-fa2753ce3ef3 C3L-05849 UCEC WGS_SV v1.1 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SV.UCEC_3_20210310/C3L-05849.final.SV.WGS.vcf 155992 VCF 1472d059a3f53433240e23e95386da00 C3L-05849.WGS.T.hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e C3L-05849.WGS.N.hg38 5aa3512e-d383-486a-ac23-d66db53f7388 89d7c272-240d-4c3a-9757-fa2753ce3ef3 +C3L-06169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-06169.evidence_0.0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 46820969 BAM e949902c72a8c2a77d31c1513970120d C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a 08e4d94d-7cc4-4fc2-a25f-df16740cdb59 +C3L-06169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-06169.evidence_1.4aa15ba7-8f09-406f-9950-0dbaad1751f0_wgs_gdc_realn.bam 54766734 BAM 1c381a8082648085ff7cd94dddda929b C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a 08e4d94d-7cc4-4fc2-a25f-df16740cdb59 +C3L-06169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3L-06169.final.SV.WGS.vcf 163931 VCF 3b37b9645dcbe954f1a46adec6fc7a86 C3L-06169.WGS.T.hg38 0fbf693f-0886-4cc8-be10-8bfd6e1bd2e2 C3L-06169.WGS.N.hg38 535ed714-d6e5-4a74-99b7-ba78acdffa9a 08e4d94d-7cc4-4fc2-a25f-df16740cdb59 C3N-00148 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00148.evidence_0.925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 63235226 BAM 8c5876dc65a6cbe970b8ad0587a52686 C3N-00148.WGS.T.hg38 521f64b0-af2c-46ca-915d-2b4d563b744d C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd e012de7f-9a09-465d-ad2e-3132bcc6a0a9 C3N-00148 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00148.evidence_1.127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 54257241 BAM a400dcfa4beeb8013aaf3f08404c887e C3N-00148.WGS.T.hg38 521f64b0-af2c-46ca-915d-2b4d563b744d C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd e012de7f-9a09-465d-ad2e-3132bcc6a0a9 C3N-00148 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00148.final.SV.WGS.vcf 146056 VCF e3fb30ca528ed996161d78557b154819 C3N-00148.WGS.T.hg38 521f64b0-af2c-46ca-915d-2b4d563b744d C3N-00148.WGS.N.hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd e012de7f-9a09-465d-ad2e-3132bcc6a0a9 @@ -1385,6 +1601,9 @@ C3N-00211 LSCC WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_ C3N-00217 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/C3N-00217.SV.WGS.vcf 178205 VCF a71b4d4513011b41d926250d81c63a2c Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 C3N-00221 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3N-00221.final.SV.WGS.vcf 180370 VCF 6b05caf386d5b071fb0820e2a279bd83 C3N-00221.WGS.T.hg38 54836e99-46d5-40d2-b523-f4b782588dd0 C3N-00221.WGS.N.hg38 20eadfd0-2177-4684-bd76-6191a4387ec9 C3N-00223 LUAD WGS_SV v0.1.2 20181218 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b56.hb2.hg38_v1.2_20181218/C3N-00223.SV.WGS.vcf 171933 VCF 4382b4acac3856bb276d6be9c7fc2036 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 +C3N-00229 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-00229.evidence_0.985912ac-ab9b-4695-9325-45f735634db5_wgs_gdc_realn.bam 45014100 BAM 6fe018d7f6fe3bbb14446d5ecef7171e C3N-00229.WGS.T.hg38 cd067844-4016-4ae5-adeb-2e2d3f1a0f06 C3N-00229.WGS.N.hg38 a5240ef5-a117-493a-90b1-be4f9d0de625 9862d52e-a371-429f-9b03-35de75e28585 +C3N-00229 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-00229.evidence_1.95c72196-e6f7-4709-a625-91fc6212cadd_wgs_gdc_realn.bam 46220576 BAM 18471b2c7bd6c301b4dbaca1634c9b48 C3N-00229.WGS.T.hg38 cd067844-4016-4ae5-adeb-2e2d3f1a0f06 C3N-00229.WGS.N.hg38 a5240ef5-a117-493a-90b1-be4f9d0de625 9862d52e-a371-429f-9b03-35de75e28585 +C3N-00229 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-00229.final.SV.WGS.vcf 190600 VCF cf16c8ad11fd26bb0f8adfea6da52efc C3N-00229.WGS.T.hg38 cd067844-4016-4ae5-adeb-2e2d3f1a0f06 C3N-00229.WGS.N.hg38 a5240ef5-a117-493a-90b1-be4f9d0de625 9862d52e-a371-429f-9b03-35de75e28585 C3N-00242 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00242.evidence_0.de313b5e-16b5-4b77-976e-d9b2b4887841_gdc_realn.bam 48837865 BAM 8f7eb3513394b1135d94f18bce04ec96 C3N-00242.WGS.T.hg38 a42575bd-7765-4ade-a67b-ed630f9d083f C3N-00242.WGS.N.hg38 a5524921-f50e-45d5-abb3-fabd80fe8750 08351571-b0b6-4f5a-99be-cd51826c60a1 C3N-00242 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00242.evidence_1.0d1f1c1c-3dcc-4f40-beaf-259e581f054f_gdc_realn.bam 46678747 BAM f80fc823d72c1490a30314839fc1b376 C3N-00242.WGS.T.hg38 a42575bd-7765-4ade-a67b-ed630f9d083f C3N-00242.WGS.N.hg38 a5524921-f50e-45d5-abb3-fabd80fe8750 08351571-b0b6-4f5a-99be-cd51826c60a1 C3N-00242 CCRCC WGS_SV v1.1 20200813 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WGS_SV_v1.1_WGS_SV.Y3.620_20200813/C3N-00242.final.SV.WGS.vcf 144947 VCF 03da04eb097b42c1640e21422a68fca3 C3N-00242.WGS.T.hg38 a42575bd-7765-4ade-a67b-ed630f9d083f C3N-00242.WGS.N.hg38 a5524921-f50e-45d5-abb3-fabd80fe8750 08351571-b0b6-4f5a-99be-cd51826c60a1 @@ -2113,6 +2332,12 @@ C3N-01765 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_ C3N-01766 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3N-01766.evidence_0.6f28b44a-bb64-4651-947b-2e7eafd00ab3_wgs_gdc_realn.bam 74995750 BAM 8215be501596cc06d8ad19498a16521b C3N-01766.WGS.T.hg38 2ab9be3a-77fb-4059-a8cc-713ae881d4f2 C3N-01766.WGS.N.hg38 c5b9f037-f471-4978-8eff-814cc98f3ea1 24f6d890-2f66-4b42-a117-984bb06ccf87 C3N-01766 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3N-01766.evidence_1.4f4f3cf5-ffc3-41e2-ab9a-3984f073b5f7_wgs_gdc_realn.bam 63575942 BAM 1adb4a24959649ec3bfe823510abd260 C3N-01766.WGS.T.hg38 2ab9be3a-77fb-4059-a8cc-713ae881d4f2 C3N-01766.WGS.N.hg38 c5b9f037-f471-4978-8eff-814cc98f3ea1 24f6d890-2f66-4b42-a117-984bb06ccf87 C3N-01766 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3N-01766.final.SV.WGS.vcf 146148 VCF 7d94bcdd1e005b6012756144d7c3646c C3N-01766.WGS.T.hg38 2ab9be3a-77fb-4059-a8cc-713ae881d4f2 C3N-01766.WGS.N.hg38 c5b9f037-f471-4978-8eff-814cc98f3ea1 24f6d890-2f66-4b42-a117-984bb06ccf87 +C3N-01767 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-01767.evidence_0.d776e407-5302-45a0-8132-f5cb9827057b_wgs_gdc_realn.bam 56047152 BAM 5e9cdc69a05ea215cbbd2ce09d7d0a34 C3N-01767.WGS.T.hg38 960c774f-e227-4cc5-a62f-3922d196bfa1 C3N-01767.WGS.N.hg38 6014ac1c-0e43-4639-a4da-aa11ee71e8c7 1caa0943-8551-488d-a1be-40dda11b80fa +C3N-01767 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-01767.evidence_1.8f5b7ba8-7564-4f6d-96ce-a72930454080_wgs_gdc_realn.bam 48696652 BAM c71957f500118d661bce6eb86f8a9f95 C3N-01767.WGS.T.hg38 960c774f-e227-4cc5-a62f-3922d196bfa1 C3N-01767.WGS.N.hg38 6014ac1c-0e43-4639-a4da-aa11ee71e8c7 1caa0943-8551-488d-a1be-40dda11b80fa +C3N-01767 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-01767.final.SV.WGS.vcf 148534 VCF 33ac208611d0763d76627d286de7b6a0 C3N-01767.WGS.T.hg38 960c774f-e227-4cc5-a62f-3922d196bfa1 C3N-01767.WGS.N.hg38 6014ac1c-0e43-4639-a4da-aa11ee71e8c7 1caa0943-8551-488d-a1be-40dda11b80fa +C3N-01768 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-01768.evidence_0.886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wgs_gdc_realn.bam 72173530 BAM bd5dffdbe75f39b33e0d9abda6114512 C3N-01768.WGS.T.hg38 1692c0c9-db04-4436-b4c8-8f1fc8bb0947 C3N-01768.WGS.N.hg38 2891e61e-9bd9-4d13-9464-8f400cf56e48 2a30067b-5faf-47fb-ad84-b26073d095ca +C3N-01768 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-01768.evidence_1.a4ebedaa-1f18-4ae2-9780-4c700c702a5f_wgs_gdc_realn.bam 51557073 BAM d63217d9430c771967f401674d58a8a8 C3N-01768.WGS.T.hg38 1692c0c9-db04-4436-b4c8-8f1fc8bb0947 C3N-01768.WGS.N.hg38 2891e61e-9bd9-4d13-9464-8f400cf56e48 2a30067b-5faf-47fb-ad84-b26073d095ca +C3N-01768 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-01768.final.SV.WGS.vcf 158330 VCF f60ae5f08ec944f766a26468f4c085a0 C3N-01768.WGS.T.hg38 1692c0c9-db04-4436-b4c8-8f1fc8bb0947 C3N-01768.WGS.N.hg38 2891e61e-9bd9-4d13-9464-8f400cf56e48 2a30067b-5faf-47fb-ad84-b26073d095ca C3N-01798 GBM WGS_SV v1.0 20190405 Y2 /CPTAC3.Y2_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.0_Y2.b1_20190405/C3N-01798.final.SV.WGS.vcf 163358 VCF 326b46a52920e350e2754f8778d56f11 C3N-01798.WGS.T.hg38 b0f9efa7-91ee-4fb1-b03a-5472c3eb6957 C3N-01798.WGS.N.hg38 eabb8aaa-0339-4d65-828a-4c144da9442d C3N-01799 LUAD WGS_SV v0.1.2 20190107 Y1 /CPTAC3_WashU_hg38/LUAD/WGS_SV.LUAD.b1-4.hg38_v1.2_20190107/C3N-01799.SV.WGS.vcf 160732 VCF 287352cbd49738a1774fe3e481d45785 Unknown.Y1 Unknown.Y1 Unknown.Y1 Unknown.Y1 C3N-01802 UCEC WGS_SV v1.1 20201009 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_WGS_SV_v1.1_WGS_SomaticSV.Y3.208_20201009/C3N-01802.evidence_0.f5ae7b0e-9213-4424-a10e-7f1383d33b5b_gdc_realn.bam 55158748 BAM b27c537c60fef6f5c03e39de7a81cfb6 C3N-01802.WGS.T.hg38 95d70287-457f-4f51-80b5-25d771f72a64 C3N-01802.WGS.N.hg38 68ed2c5e-6ac7-4305-b273-d1c649e89954 dc83e99f-35cc-4faa-b76d-ffa8501a4489 @@ -2492,6 +2717,9 @@ C3N-02682 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3N-02683 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-02683.evidence_0.63e86eb1-34a0-4930-ab71-1e80bca277ed_wgs_gdc_realn.bam 37095307 BAM 1173f3a471c101e4eda9eafb3cf68422 C3N-02683.WGS.T.hg38 126f97d8-c3e5-4676-87e4-f0e71791a784 C3N-02683.WGS.N.hg38 61819705-e22c-4d38-9cac-3d53f1d640fa eea07ea8-a710-4dae-a42d-280505ff7d9d C3N-02683 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-02683.evidence_1.17fb3ecc-d825-4e43-a854-3494772f2488_wgs_gdc_realn.bam 34700775 BAM abcc245d0cb1e9f00f3833057d912481 C3N-02683.WGS.T.hg38 126f97d8-c3e5-4676-87e4-f0e71791a784 C3N-02683.WGS.N.hg38 61819705-e22c-4d38-9cac-3d53f1d640fa eea07ea8-a710-4dae-a42d-280505ff7d9d C3N-02683 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-02683.final.SV.WGS.vcf 181828 VCF a2c183378c99e66049ec773ecbd9eeff C3N-02683.WGS.T.hg38 126f97d8-c3e5-4676-87e4-f0e71791a784 C3N-02683.WGS.N.hg38 61819705-e22c-4d38-9cac-3d53f1d640fa eea07ea8-a710-4dae-a42d-280505ff7d9d +C3N-02688 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-02688.evidence_0.7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wgs_gdc_realn.bam 54699460 BAM 831cb90348133d0c3065c150746c1a46 C3N-02688.WGS.T.hg38 d3f651cf-a358-4262-bc5f-f8e85dd223ab C3N-02688.WGS.N.hg38 3874521a-91da-4fe6-aa99-5c5a25f74594 9c0b0837-6e5b-4e32-bcc6-be6a3d880a19 +C3N-02688 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-02688.evidence_1.841db2f4-f7e1-4d01-aba1-5f75df188097_wgs_gdc_realn.bam 47301429 BAM 4daa532dd36eafa7ad74612d0449acff C3N-02688.WGS.T.hg38 d3f651cf-a358-4262-bc5f-f8e85dd223ab C3N-02688.WGS.N.hg38 3874521a-91da-4fe6-aa99-5c5a25f74594 9c0b0837-6e5b-4e32-bcc6-be6a3d880a19 +C3N-02688 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-02688.final.SV.WGS.vcf 165174 VCF 07ea89f1198bf6960f0f26596ef3aba5 C3N-02688.WGS.T.hg38 d3f651cf-a358-4262-bc5f-f8e85dd223ab C3N-02688.WGS.N.hg38 3874521a-91da-4fe6-aa99-5c5a25f74594 9c0b0837-6e5b-4e32-bcc6-be6a3d880a19 C3N-02693 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3N-02693.final.SV.WGS.vcf 305795 VCF 8b821fab6777f0ea5676e975b4eee73e C3N-02693.WGS.T UMich-adhoc-realign C3N-02693.WGS.N UMich-adhoc-realign 8db09040-de88-4d89-b8a5-e0c107feeaab C3N-02694 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3N-02694.final.SV.WGS.vcf 305594 VCF a186bc1e13f8db3b4d2bb43e2db56302 C3N-02694.WGS.T UMich-adhoc-realign C3N-02694.WGS.N UMich-adhoc-realign 9c201a69-a830-4b5e-ab20-b512b4c60f57 C3N-02695 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3N-02695.final.SV.WGS.vcf 558439 VCF 55f6f93103184011b7a34a264bea15c1 C3N-02695.WGS.T UMich-adhoc-realign C3N-02695.WGS.N UMich-adhoc-realign ea0b919c-3bf7-42e9-a813-5844731c9499 @@ -2820,6 +3048,9 @@ C3N-03756 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3N-03757 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03757.evidence_0.8d894511-5d1c-4e1d-9276-2652042bb730_wgs_gdc_realn.bam 44508727 BAM 8288ecaac32af42dcc2b4f42c9999e8d C3N-03757.WGS.T.hg38 b5398b66-5b43-4f83-a30a-21db3a30b5e9 C3N-03757.WGS.N.hg38 8bbe506e-60c3-4df6-af3d-f7713d49b0dc 98f1161b-9872-499c-8a72-589de98e5d26 C3N-03757 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03757.evidence_1.fa002608-faaf-4aa1-8594-0146105e9048_wgs_gdc_realn.bam 37839440 BAM b04ee7ed79124204cf694ce9b0d38821 C3N-03757.WGS.T.hg38 b5398b66-5b43-4f83-a30a-21db3a30b5e9 C3N-03757.WGS.N.hg38 8bbe506e-60c3-4df6-af3d-f7713d49b0dc 98f1161b-9872-499c-8a72-589de98e5d26 C3N-03757 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03757.final.SV.WGS.vcf 158676 VCF 54a59ff0cf9bc5afa34d0f104e0ffaea C3N-03757.WGS.T.hg38 b5398b66-5b43-4f83-a30a-21db3a30b5e9 C3N-03757.WGS.N.hg38 8bbe506e-60c3-4df6-af3d-f7713d49b0dc 98f1161b-9872-499c-8a72-589de98e5d26 +C3N-03762 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-03762.evidence_0.f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wgs_gdc_realn.bam 50821565 BAM a5dd868d17507f3d9f0950e5e2e532bc C3N-03762.WGS.T.hg38 959ede3b-d2ab-4799-ad2f-e1e146acf67b C3N-03762.WGS.N.hg38 83a064b6-a934-408d-93ee-ab41545c75c5 d4752181-5b22-4e79-8955-ecbfbf58830a +C3N-03762 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-03762.evidence_1.a5fe587b-8a3a-411a-99cd-d07dbade113f_wgs_gdc_realn.bam 47553730 BAM 00974fe4c71c42f293e0e7d5d3bf0bc3 C3N-03762.WGS.T.hg38 959ede3b-d2ab-4799-ad2f-e1e146acf67b C3N-03762.WGS.N.hg38 83a064b6-a934-408d-93ee-ab41545c75c5 d4752181-5b22-4e79-8955-ecbfbf58830a +C3N-03762 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-03762.final.SV.WGS.vcf 154486 VCF f281726d516a47c0f75c6246d4dea671 C3N-03762.WGS.T.hg38 959ede3b-d2ab-4799-ad2f-e1e146acf67b C3N-03762.WGS.N.hg38 83a064b6-a934-408d-93ee-ab41545c75c5 d4752181-5b22-4e79-8955-ecbfbf58830a C3N-03764 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03764.evidence_0.6fd426f8-0858-4065-98e6-df2c1651774b_wgs_gdc_realn.bam 54569364 BAM 6e617c183a852b860c33bce8c9f81680 C3N-03764.WGS.T.hg38 957b7c6c-7ef6-4fae-bbf5-785a98e6ad0e C3N-03764.WGS.N.hg38 4334fe61-4e0f-46bb-81ed-f1bf83fba41b a15375ac-3c06-4091-bb12-c1f1d7bba35c C3N-03764 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03764.evidence_1.66d4a838-4adc-4374-9422-a19d26ead31b_wgs_gdc_realn.bam 58634107 BAM 8e03b687442796ed21dfaa1d19c8ed2a C3N-03764.WGS.T.hg38 957b7c6c-7ef6-4fae-bbf5-785a98e6ad0e C3N-03764.WGS.N.hg38 4334fe61-4e0f-46bb-81ed-f1bf83fba41b a15375ac-3c06-4091-bb12-c1f1d7bba35c C3N-03764 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03764.final.SV.WGS.vcf 163586 VCF 166f85e4c359b0e021a44cd918211227 C3N-03764.WGS.T.hg38 957b7c6c-7ef6-4fae-bbf5-785a98e6ad0e C3N-03764.WGS.N.hg38 4334fe61-4e0f-46bb-81ed-f1bf83fba41b a15375ac-3c06-4091-bb12-c1f1d7bba35c @@ -2841,6 +3072,12 @@ C3N-03789 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3N-03791 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03791.evidence_0.2b68f934-9910-4dc6-adc3-1cf82764a7a0_wgs_gdc_realn.bam 43327522 BAM fcc431c0c02f11075084ffbfcc336836 C3N-03791.WGS.T.hg38 9d67076c-f460-4452-b785-b2aa0e0ae8df C3N-03791.WGS.N.hg38 dbb9edea-f9d6-4add-b71f-a6229f36db20 680aae23-97a2-4267-8b7f-098b7f6bf71f C3N-03791 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03791.evidence_1.a12853e7-7ad9-40e5-a71a-b50c18db7465_wgs_gdc_realn.bam 40290027 BAM 3f9d4e345403f1f64f28dfc94612686a C3N-03791.WGS.T.hg38 9d67076c-f460-4452-b785-b2aa0e0ae8df C3N-03791.WGS.N.hg38 dbb9edea-f9d6-4add-b71f-a6229f36db20 680aae23-97a2-4267-8b7f-098b7f6bf71f C3N-03791 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03791.final.SV.WGS.vcf 149621 VCF 4957fe6cde1cdf036ba5598fc62583cd C3N-03791.WGS.T.hg38 9d67076c-f460-4452-b785-b2aa0e0ae8df C3N-03791.WGS.N.hg38 dbb9edea-f9d6-4add-b71f-a6229f36db20 680aae23-97a2-4267-8b7f-098b7f6bf71f +C3N-03792 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-03792.evidence_0.3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 62724483 BAM ec42267fca27f3c0ae18f343756bf23d C3N-03792.WGS.T.hg38 589da87e-23f6-4ea0-a617-aca6a439932b C3N-03792.WGS.N.hg38 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 d6b520b2-15d6-43b7-ae87-9aa54aac8252 +C3N-03792 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-03792.evidence_1.e3217e6c-3148-4949-9082-6a364c7f5166_wgs_gdc_realn.bam 55148027 BAM d34c563a07104679f98b01576d84ed91 C3N-03792.WGS.T.hg38 589da87e-23f6-4ea0-a617-aca6a439932b C3N-03792.WGS.N.hg38 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 d6b520b2-15d6-43b7-ae87-9aa54aac8252 +C3N-03792 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-03792.final.SV.WGS.vcf 180324 VCF 9fc19cdf8138a3ac1026049aeee38663 C3N-03792.WGS.T.hg38 589da87e-23f6-4ea0-a617-aca6a439932b C3N-03792.WGS.N.hg38 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 d6b520b2-15d6-43b7-ae87-9aa54aac8252 +C3N-03796 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-03796.evidence_0.108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 58922075 BAM 5b1757db3001bee6db52fecd087d95a4 C3N-03796.WGS.T.hg38 dab304ed-18fc-4407-b298-b1c9e04fadbf C3N-03796.WGS.N.hg38 44090d4f-41a1-4a1c-840a-f1c20832adde ca120aa3-b386-4ae3-829a-e2f71f0f2f76 +C3N-03796 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-03796.evidence_1.a34a1b81-a986-4402-a383-1bc5816a0e7e_wgs_gdc_realn.bam 53649607 BAM 35e2a1e4668f897e029dfd4de3e0e38a C3N-03796.WGS.T.hg38 dab304ed-18fc-4407-b298-b1c9e04fadbf C3N-03796.WGS.N.hg38 44090d4f-41a1-4a1c-840a-f1c20832adde ca120aa3-b386-4ae3-829a-e2f71f0f2f76 +C3N-03796 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-03796.final.SV.WGS.vcf 208332 VCF 39740c726b8aa1b7386c271878a0c4eb C3N-03796.WGS.T.hg38 dab304ed-18fc-4407-b298-b1c9e04fadbf C3N-03796.WGS.N.hg38 44090d4f-41a1-4a1c-840a-f1c20832adde ca120aa3-b386-4ae3-829a-e2f71f0f2f76 C3N-03797 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03797.evidence_0.966c6951-4f60-4deb-8ffe-9c5954afab8e_wgs_gdc_realn.bam 72561203 BAM ce2a353ccf5c5b903ed15cbd49ba06f2 C3N-03797.WGS.T.hg38 9ef14794-ec5b-4756-b14e-78e0a5b5f791 C3N-03797.WGS.N.hg38 c8df50e5-603b-4afa-987d-53514939e122 ca62a9eb-7533-4cb0-981d-188562ea3d4c C3N-03797 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03797.evidence_1.422a6465-56ff-4265-bb86-43cf4b882e46_wgs_gdc_realn.bam 32506157 BAM 2e1167924e568ecdc16ba23d3a7b56c0 C3N-03797.WGS.T.hg38 9ef14794-ec5b-4756-b14e-78e0a5b5f791 C3N-03797.WGS.N.hg38 c8df50e5-603b-4afa-987d-53514939e122 ca62a9eb-7533-4cb0-981d-188562ea3d4c C3N-03797 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03797.final.SV.WGS.vcf 149371 VCF 16ff94475f6b0efbcee32c20ef5b00cc C3N-03797.WGS.T.hg38 9ef14794-ec5b-4756-b14e-78e0a5b5f791 C3N-03797.WGS.N.hg38 c8df50e5-603b-4afa-987d-53514939e122 ca62a9eb-7533-4cb0-981d-188562ea3d4c @@ -2880,6 +3117,9 @@ C3N-03911 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3N-03921 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03921.evidence_0.999fc728-4e24-4737-9daf-55eb19ded472_wgs_gdc_realn.bam 42449574 BAM 0489dd4c4d8b00b9d53e8fb307dccf89 C3N-03921.WGS.T.hg38 be3f4887-19e5-4dea-8d27-ec6c573d5571 C3N-03921.WGS.N.hg38 e35a5b94-ed10-489e-81eb-fe73e8229013 afa79b0f-24ad-488f-a6f7-ea2e9cc9859d C3N-03921 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03921.evidence_1.56ede771-6ddf-4dd2-9672-f93767b5a999_wgs_gdc_realn.bam 50894191 BAM 203f6fc3ef6cafa989edd7f74b610f94 C3N-03921.WGS.T.hg38 be3f4887-19e5-4dea-8d27-ec6c573d5571 C3N-03921.WGS.N.hg38 e35a5b94-ed10-489e-81eb-fe73e8229013 afa79b0f-24ad-488f-a6f7-ea2e9cc9859d C3N-03921 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03921.final.SV.WGS.vcf 154548 VCF 3c5300c30852b8ce6f6a97f14bfc4f9f C3N-03921.WGS.T.hg38 be3f4887-19e5-4dea-8d27-ec6c573d5571 C3N-03921.WGS.N.hg38 e35a5b94-ed10-489e-81eb-fe73e8229013 afa79b0f-24ad-488f-a6f7-ea2e9cc9859d +C3N-03923 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-03923.evidence_0.5b4a4a97-1ca6-43c7-ae59-d4de15fcbd74_wgs_gdc_realn.bam 49840584 BAM dc827a1ae29bb92ce2f2cc36565bd6d7 C3N-03923.WGS.T.hg38 fdf76f02-3f94-4907-964d-b082cbb0af56 C3N-03923.WGS.N.hg38 d0933bbc-e62a-41b2-bd12-be1d63e53836 91825cc3-57ae-4d48-8af0-670ab1847dbb +C3N-03923 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-03923.evidence_1.3df344f8-a667-4995-baf0-ea7725ad0ea9_wgs_gdc_realn.bam 49895964 BAM c64f7715602535cb96d1bf0f7f7196e2 C3N-03923.WGS.T.hg38 fdf76f02-3f94-4907-964d-b082cbb0af56 C3N-03923.WGS.N.hg38 d0933bbc-e62a-41b2-bd12-be1d63e53836 91825cc3-57ae-4d48-8af0-670ab1847dbb +C3N-03923 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-03923.final.SV.WGS.vcf 204779 VCF 3f8488a6714668e5c0b1cdc387702f7e C3N-03923.WGS.T.hg38 fdf76f02-3f94-4907-964d-b082cbb0af56 C3N-03923.WGS.N.hg38 d0933bbc-e62a-41b2-bd12-be1d63e53836 91825cc3-57ae-4d48-8af0-670ab1847dbb C3N-03928 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3N-03928.final.SV.WGS.vcf 687594 VCF 3f06b67b3c5b98d6927cafcea1485481 C3N-03928.WGS.T UMich-adhoc-realign C3N-03928.WGS.N UMich-adhoc-realign 3609c29d-a0c7-4d02-a963-db56e717d9f0 C3N-03929 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03929.evidence_0.6844c215-74c9-4279-92a7-7bd760aedaf2_wgs_gdc_realn.bam 52509579 BAM ffa1ea7d882d46fcb6e6552920d02a76 C3N-03929.WGS.T.hg38 f8417132-d56e-41aa-9abc-b6e1a0a674b8 C3N-03929.WGS.N.hg38 ddfdbe51-fc93-411d-be38-da554a7cef3d c0b7b329-14c8-4ecb-a41d-f8497bff99c7 C3N-03929 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-03929.evidence_1.ade1d469-d5fa-4a53-8646-e4f88e52bd4c_wgs_gdc_realn.bam 51392871 BAM bba9d7f81a33c67b0ef696cac8c19445 C3N-03929.WGS.T.hg38 f8417132-d56e-41aa-9abc-b6e1a0a674b8 C3N-03929.WGS.N.hg38 ddfdbe51-fc93-411d-be38-da554a7cef3d c0b7b329-14c8-4ecb-a41d-f8497bff99c7 @@ -2919,9 +3159,15 @@ C3N-04157 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_ C3N-04157 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04157.evidence_1.58547ca2-ad3a-435c-8475-e89753be99a7_wgs_gdc_realn.bam 43939709 BAM bb3853f52172323d671ed14531a22680 C3N-04157.WGS.T.hg38 fa55fcc0-ac46-40cc-ad0f-56302e7ac4c2 C3N-04157.WGS.N.hg38 84153e0f-0b09-40db-b5b7-d65fe981258f 17065361-bdb0-4898-bb75-e5dec0555983 C3N-04157 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04157.final.SV.WGS.vcf 147012 VCF e44ab38eafb8b5a3a393a347fe1cf3df C3N-04157.WGS.T.hg38 fa55fcc0-ac46-40cc-ad0f-56302e7ac4c2 C3N-04157.WGS.N.hg38 84153e0f-0b09-40db-b5b7-d65fe981258f 17065361-bdb0-4898-bb75-e5dec0555983 C3N-04162 LSCC WGS_SV v1.1 20191120 Y3 /CPTAC3.Y2_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_LSCC-remainder_20191120/C3N-04162.final.SV.WGS.vcf 159586 VCF fc3503884296b81c3bad8018577973d7 C3N-04162.WGS.T.hg38 544123c3-f2e2-467a-a08a-321eee4abf75 C3N-04162.WGS.N.hg38 8a7829cf-beff-4e1f-9437-863117642312 +C3N-04167 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04167.evidence_0.0675bc40-c123-4b18-a757-d78c4b35e44d_wgs_gdc_realn.bam 52531169 BAM ec5a01baf722b8871c5f4303e84c7ed0 C3N-04167.WGS.T.hg38 137fb776-d437-4540-b758-a4da5a85994f C3N-04167.WGS.N.hg38 2771a10d-8489-46ac-8cc4-3b167f93421f 5fc91d09-0713-4acb-a3c5-4a4f02163971 +C3N-04167 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04167.evidence_1.08585106-99a3-44b3-8df8-1d8ca02e0287_wgs_gdc_realn.bam 52932372 BAM ab54984fd88f456da912c67cba727540 C3N-04167.WGS.T.hg38 137fb776-d437-4540-b758-a4da5a85994f C3N-04167.WGS.N.hg38 2771a10d-8489-46ac-8cc4-3b167f93421f 5fc91d09-0713-4acb-a3c5-4a4f02163971 +C3N-04167 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04167.final.SV.WGS.vcf 168357 VCF 7ca54743de68bf5c1649e0735df2364f C3N-04167.WGS.T.hg38 137fb776-d437-4540-b758-a4da5a85994f C3N-04167.WGS.N.hg38 2771a10d-8489-46ac-8cc4-3b167f93421f 5fc91d09-0713-4acb-a3c5-4a4f02163971 C3N-04168 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04168.evidence_0.0d3002e7-e715-44ac-9774-c07ee75d5d0a_wgs_gdc_realn.bam 66773506 BAM 2beaba233e1e878c2d7d79337459c5c9 C3N-04168.WGS.T.hg38 bb8490da-a68f-4adf-9bf4-d81488529100 C3N-04168.WGS.N.hg38 bb82aeb6-da15-4bec-9405-137957c2cc81 22c0386d-8df6-4b05-beb0-52554cc5ff93 C3N-04168 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04168.evidence_1.3fcfbdc6-c537-4fc6-a54c-b0fdaae07128_wgs_gdc_realn.bam 54687492 BAM d32c0c2ff99f1e24c0f96d798e008bbb C3N-04168.WGS.T.hg38 bb8490da-a68f-4adf-9bf4-d81488529100 C3N-04168.WGS.N.hg38 bb82aeb6-da15-4bec-9405-137957c2cc81 22c0386d-8df6-4b05-beb0-52554cc5ff93 C3N-04168 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04168.final.SV.WGS.vcf 146282 VCF 7ea35f42b6c9d37f713f14ba5fff732a C3N-04168.WGS.T.hg38 bb8490da-a68f-4adf-9bf4-d81488529100 C3N-04168.WGS.N.hg38 bb82aeb6-da15-4bec-9405-137957c2cc81 22c0386d-8df6-4b05-beb0-52554cc5ff93 +C3N-04169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04169.evidence_0.54e2e9f0-9524-4e55-9d51-57a4fb7cce60_wgs_gdc_realn.bam 51442654 BAM ee812cd1fe7b29cc2980e6cdb6067ed7 C3N-04169.WGS.T.hg38 0804e70b-bb9b-43d8-ab44-1205ebbde973 C3N-04169.WGS.N.hg38 d3718f3b-2fda-4bdc-a5ad-37575d052825 b9acfe20-4e5f-47a4-a621-fe88ddc79bf3 +C3N-04169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04169.evidence_1.a23139fb-5134-4078-b6dc-1bda1c7f8bd9_wgs_gdc_realn.bam 41719634 BAM 856bcd670fc92050cb0077c94f373d42 C3N-04169.WGS.T.hg38 0804e70b-bb9b-43d8-ab44-1205ebbde973 C3N-04169.WGS.N.hg38 d3718f3b-2fda-4bdc-a5ad-37575d052825 b9acfe20-4e5f-47a4-a621-fe88ddc79bf3 +C3N-04169 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04169.final.SV.WGS.vcf 178353 VCF d35a8d1f898dbe4dc0b52ad025a1b694 C3N-04169.WGS.T.hg38 0804e70b-bb9b-43d8-ab44-1205ebbde973 C3N-04169.WGS.N.hg38 d3718f3b-2fda-4bdc-a5ad-37575d052825 b9acfe20-4e5f-47a4-a621-fe88ddc79bf3 C3N-04173 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04173.evidence_0.298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wgs_gdc_realn.bam 58380443 BAM 77c4c5950d0434d80f4ece1267b410da C3N-04173.WGS.T.hg38 5b0d16d0-934f-45f3-8d11-1b8f4ac1e6bb C3N-04173.WGS.N.hg38 3ad93279-c460-4e39-8791-0e83339a9121 fd579f5b-407d-4867-9b74-80ca6196c1a7 C3N-04173 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04173.evidence_1.69ebc122-a499-4542-be3d-a8dda6e7f08a_wgs_gdc_realn.bam 60274707 BAM 1cef7f5eef1116663fef570b61684e8a C3N-04173.WGS.T.hg38 5b0d16d0-934f-45f3-8d11-1b8f4ac1e6bb C3N-04173.WGS.N.hg38 3ad93279-c460-4e39-8791-0e83339a9121 fd579f5b-407d-4867-9b74-80ca6196c1a7 C3N-04173 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04173.final.SV.WGS.vcf 147416 VCF fc48ce6491a452ba6932e6c16cda5d91 C3N-04173.WGS.T.hg38 5b0d16d0-934f-45f3-8d11-1b8f4ac1e6bb C3N-04173.WGS.N.hg38 3ad93279-c460-4e39-8791-0e83339a9121 fd579f5b-407d-4867-9b74-80ca6196c1a7 @@ -2947,16 +3193,73 @@ C3N-04312 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1. C3N-04382 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04382.evidence_0.88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wgs_gdc_realn.bam 49119378 BAM 53171a1dff43e845be4dbf780610679e C3N-04382.WGS.T.hg38 1b1f792a-6c78-41a7-be1b-b7ff70c43db3 C3N-04382.WGS.N.hg38 ca3a7c80-24b2-4eef-a824-158c4f53e2af 229a5c3a-2884-4d19-a219-5c31bd875d69 C3N-04382 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04382.evidence_1.ac407b00-f068-483f-b21e-9b5cada5daf4_wgs_gdc_realn.bam 57311653 BAM 423516df27f46e9ff499569a69c8ad99 C3N-04382.WGS.T.hg38 1b1f792a-6c78-41a7-be1b-b7ff70c43db3 C3N-04382.WGS.N.hg38 ca3a7c80-24b2-4eef-a824-158c4f53e2af 229a5c3a-2884-4d19-a219-5c31bd875d69 C3N-04382 LUAD WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/LUAD/CPTAC3_LUAD_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04382.final.SV.WGS.vcf 168797 VCF e05e7ecfb3330e5c609d32ae411b44a3 C3N-04382.WGS.T.hg38 1b1f792a-6c78-41a7-be1b-b7ff70c43db3 C3N-04382.WGS.N.hg38 ca3a7c80-24b2-4eef-a824-158c4f53e2af 229a5c3a-2884-4d19-a219-5c31bd875d69 +C3N-04457 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04457.evidence_0.0f0cf4d8-bb22-4f10-a486-5277dc30f309_wgs_gdc_realn.bam 50819151 BAM ab4546da318a885c1e15c9f9d922f8fe C3N-04457.WGS.T.hg38 1832e3d6-cc03-4573-9524-0d738f7a7c48 C3N-04457.WGS.N.hg38 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 0980ceeb-b882-4c85-917e-16cea31f5087 +C3N-04457 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04457.evidence_1.54c6972a-c420-4047-87bc-ed4566f36a28_wgs_gdc_realn.bam 61485120 BAM 5afeb1dd0ed041e5f91242db08b03de0 C3N-04457.WGS.T.hg38 1832e3d6-cc03-4573-9524-0d738f7a7c48 C3N-04457.WGS.N.hg38 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 0980ceeb-b882-4c85-917e-16cea31f5087 +C3N-04457 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04457.final.SV.WGS.vcf 175474 VCF 7ad71ca2f69849fc84e09691ffb409e0 C3N-04457.WGS.T.hg38 1832e3d6-cc03-4573-9524-0d738f7a7c48 C3N-04457.WGS.N.hg38 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 0980ceeb-b882-4c85-917e-16cea31f5087 +C3N-04609 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04609.evidence_0.d2aedfb1-8888-46fa-b2a6-ed9137cf7761_wgs_gdc_realn.bam 48067993 BAM 036aef4c650f256dc51f23094295ff82 C3N-04609.WGS.T.hg38 1c4ef9fd-f19e-4a53-83e8-b1f50688373d C3N-04609.WGS.N.hg38 ec37fbbc-6add-431e-813d-367d21742608 8331f0d3-1ba3-4e9c-b1d5-9ab463719286 +C3N-04609 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04609.evidence_1.daf0041e-8cbb-47d7-af99-edc911331d31_wgs_gdc_realn.bam 55116069 BAM ea8adf07487f54f96b01e907e0c80a69 C3N-04609.WGS.T.hg38 1c4ef9fd-f19e-4a53-83e8-b1f50688373d C3N-04609.WGS.N.hg38 ec37fbbc-6add-431e-813d-367d21742608 8331f0d3-1ba3-4e9c-b1d5-9ab463719286 +C3N-04609 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04609.final.SV.WGS.vcf 199449 VCF 56d6b87146c72e523bd1340fe0295522 C3N-04609.WGS.T.hg38 1c4ef9fd-f19e-4a53-83e8-b1f50688373d C3N-04609.WGS.N.hg38 ec37fbbc-6add-431e-813d-367d21742608 8331f0d3-1ba3-4e9c-b1d5-9ab463719286 C3N-04611 HNSCC WGS_SV 20200103 20200107 Y3 /CPTAC3.Y2_WashU/HNSCC/CPTAC3_HNSCC_WGS_SV_20200103_HNSCC_UMich_20200107/C3N-04611.final.SV.WGS.vcf 344615 VCF 5fd092670754a9c0c8c006984f044aff C3N-04611.WGS.T UMich-adhoc-realign C3N-04611.WGS.N UMich-adhoc-realign 0ffe4322-91f7-478d-9ec2-18499892d1f8 +C3N-04673 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04673.evidence_0.2146b731-6763-48fb-a3eb-b18ee89cfb73_wgs_gdc_realn.bam 53032421 BAM fb874a6de2f43b58947ff2c5c20b55d4 C3N-04673.WGS.T.hg38 3aec8b92-8f04-4415-91a0-083e7d10a472 C3N-04673.WGS.N.hg38 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 a43934e5-7ab7-4f00-965b-9d66e156bb0e +C3N-04673 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04673.evidence_1.70db54d7-3201-4b69-bb47-74987b867428_wgs_gdc_realn.bam 54203966 BAM a0c660456d613712f12dc0292bb8809f C3N-04673.WGS.T.hg38 3aec8b92-8f04-4415-91a0-083e7d10a472 C3N-04673.WGS.N.hg38 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 a43934e5-7ab7-4f00-965b-9d66e156bb0e +C3N-04673 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04673.final.SV.WGS.vcf 189149 VCF 1096c432b8d9bdb79b785d7ff9aac631 C3N-04673.WGS.T.hg38 3aec8b92-8f04-4415-91a0-083e7d10a472 C3N-04673.WGS.N.hg38 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 a43934e5-7ab7-4f00-965b-9d66e156bb0e C3N-04683 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04683.evidence_0.83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wgs_gdc_realn.bam 41127184 BAM f29c68a3e7ca2c85a09b1f8b968ca9a0 C3N-04683.WGS.T.hg38 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b C3N-04683.WGS.N.hg38 f3bee196-c66b-45c1-92f3-fb04a65c0b65 319d69fa-1967-4660-ae25-e4d90d2795e7 C3N-04683 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04683.evidence_1.caea80b3-44ef-4e4b-a5a5-91889e0ca761_wgs_gdc_realn.bam 46226398 BAM cee9c089faafa93d47e43c11d72663fb C3N-04683.WGS.T.hg38 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b C3N-04683.WGS.N.hg38 f3bee196-c66b-45c1-92f3-fb04a65c0b65 319d69fa-1967-4660-ae25-e4d90d2795e7 C3N-04683 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04683.final.SV.WGS.vcf 150027 VCF 2cb9f9c50f875290bc3b542db1060b02 C3N-04683.WGS.T.hg38 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b C3N-04683.WGS.N.hg38 f3bee196-c66b-45c1-92f3-fb04a65c0b65 319d69fa-1967-4660-ae25-e4d90d2795e7 C3N-04686 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04686.evidence_0.04d7ff8e-1924-477d-a04b-5eaef2815a7d_wgs_gdc_realn.bam 40168531 BAM ccd49a27feb83f4aaa086596ddbfb20c C3N-04686.WGS.T.hg38 59582a18-0dfc-420d-bfbd-dfd9aac6c58a C3N-04686.WGS.N.hg38 1617d7cd-32d7-40c4-92a8-c7d33265aeea 60bf740f-2104-4492-883e-ca6d848ca35b C3N-04686 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04686.evidence_1.c5c81116-8317-4cbd-89c7-d189c6bd58d5_wgs_gdc_realn.bam 51269335 BAM 1570d0f62379680bd21504362edc585e C3N-04686.WGS.T.hg38 59582a18-0dfc-420d-bfbd-dfd9aac6c58a C3N-04686.WGS.N.hg38 1617d7cd-32d7-40c4-92a8-c7d33265aeea 60bf740f-2104-4492-883e-ca6d848ca35b C3N-04686 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04686.final.SV.WGS.vcf 181264 VCF 660ad9a640a9dc70ae3c81921cd05c03 C3N-04686.WGS.T.hg38 59582a18-0dfc-420d-bfbd-dfd9aac6c58a C3N-04686.WGS.N.hg38 1617d7cd-32d7-40c4-92a8-c7d33265aeea 60bf740f-2104-4492-883e-ca6d848ca35b +C3N-04687 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-04687.evidence_0.89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 64219814 BAM dcd7e8bed59ac6cec69d5ce2d9ea7fcb C3N-04687.WGS.T.hg38 0e2b89fc-c483-476d-96f9-d0dcdbcec179 C3N-04687.WGS.N.hg38 a12ebbd1-84fa-441b-8b7e-019cbde83059 c447b64c-46ae-4e55-ae80-70c84d6f772c +C3N-04687 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-04687.evidence_1.8d5b75ae-e777-4df1-8837-4a71d060d681_wgs_gdc_realn.bam 55780857 BAM 39b64ec5ed429e4a496cf0db974d5a35 C3N-04687.WGS.T.hg38 0e2b89fc-c483-476d-96f9-d0dcdbcec179 C3N-04687.WGS.N.hg38 a12ebbd1-84fa-441b-8b7e-019cbde83059 c447b64c-46ae-4e55-ae80-70c84d6f772c +C3N-04687 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-04687.final.SV.WGS.vcf 150271 VCF e19ca635036bbae2370f782ed9fff1cf C3N-04687.WGS.T.hg38 0e2b89fc-c483-476d-96f9-d0dcdbcec179 C3N-04687.WGS.N.hg38 a12ebbd1-84fa-441b-8b7e-019cbde83059 c447b64c-46ae-4e55-ae80-70c84d6f772c C3N-04691 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04691.evidence_0.cdd22aae-ff9d-430d-a275-1da5f8befaab_wgs_gdc_realn.bam 43372590 BAM 3a8028bb02568db20ea10bf7e2fe17e8 C3N-04691.WGS.T.hg38 705077f1-277d-46d7-85d6-3248b1d8a3db C3N-04691.WGS.N.hg38 7a1f5582-fc6d-4c7f-9da4-b605a67108ea 035cade1-cb57-4e8a-b44c-1ce1a5730d6f C3N-04691 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04691.evidence_1.c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wgs_gdc_realn.bam 47629684 BAM 66221d20747344d3550b33e77cd97fd6 C3N-04691.WGS.T.hg38 705077f1-277d-46d7-85d6-3248b1d8a3db C3N-04691.WGS.N.hg38 7a1f5582-fc6d-4c7f-9da4-b605a67108ea 035cade1-cb57-4e8a-b44c-1ce1a5730d6f C3N-04691 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04691.final.SV.WGS.vcf 153456 VCF 9d48c45a0f7eef3543704dd46c730f15 C3N-04691.WGS.T.hg38 705077f1-277d-46d7-85d6-3248b1d8a3db C3N-04691.WGS.N.hg38 7a1f5582-fc6d-4c7f-9da4-b605a67108ea 035cade1-cb57-4e8a-b44c-1ce1a5730d6f C3N-04693 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04693.evidence_0.b996ab8e-ae14-42ed-ac60-b74d932c0460_wgs_gdc_realn.bam 46410527 BAM 09888afa5597102ee0ffd18c34c1eb54 C3N-04693.WGS.T.hg38 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 C3N-04693.WGS.N.hg38 de5ee410-fb28-490e-81a9-60d05e4039f8 815b46ad-0ec6-4cc3-89aa-8754a2f73a39 C3N-04693 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04693.evidence_1.27f4dc0c-6231-4650-a00e-9ccc4e942c89_wgs_gdc_realn.bam 60177242 BAM 74ad23a7d20c86c81d9f9d6dc3dd796c C3N-04693.WGS.T.hg38 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 C3N-04693.WGS.N.hg38 de5ee410-fb28-490e-81a9-60d05e4039f8 815b46ad-0ec6-4cc3-89aa-8754a2f73a39 C3N-04693 GBM WGS_SV v1.1 20210415 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_LUAD_GBM.SV_20210415/C3N-04693.final.SV.WGS.vcf 166629 VCF 65e8823210dc00b65c5f65ab2f1bb903 C3N-04693.WGS.T.hg38 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 C3N-04693.WGS.N.hg38 de5ee410-fb28-490e-81a9-60d05e4039f8 815b46ad-0ec6-4cc3-89aa-8754a2f73a39 +C3N-04695 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-04695.evidence_0.dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 53353957 BAM 27e225be87234c671d6e0e436d04e3c2 C3N-04695.WGS.T.hg38 1892aa40-a858-4f1d-a3ee-24e84b7d6216 C3N-04695.WGS.N.hg38 fab7e8e1-714b-4798-9ef7-1612394e55d5 7fce96ba-784c-480c-a339-b369007319f9 +C3N-04695 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-04695.evidence_1.d7f885b4-11bb-4eef-81bf-74643b30908c_wgs_gdc_realn.bam 65791463 BAM 3cb5a9f5e652152f333b93f11211d1a6 C3N-04695.WGS.T.hg38 1892aa40-a858-4f1d-a3ee-24e84b7d6216 C3N-04695.WGS.N.hg38 fab7e8e1-714b-4798-9ef7-1612394e55d5 7fce96ba-784c-480c-a339-b369007319f9 +C3N-04695 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-04695.final.SV.WGS.vcf 175029 VCF 3ad6a77f0fbf0a645ae4c6c4f75b78c1 C3N-04695.WGS.T.hg38 1892aa40-a858-4f1d-a3ee-24e84b7d6216 C3N-04695.WGS.N.hg38 fab7e8e1-714b-4798-9ef7-1612394e55d5 7fce96ba-784c-480c-a339-b369007319f9 +C3N-04701 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04701.evidence_0.dea222cc-4710-482a-b1b9-12cfc82f8bb2_wgs_gdc_realn.bam 59715040 BAM d7c37574f50b679287307d857ee79da9 C3N-04701.WGS.T.hg38 5305bb2a-ddee-4206-92c2-f11f72ce674c C3N-04701.WGS.N.hg38 ff0ab924-09a0-4169-af5a-304760c894ed 0491b370-df88-4ad9-8795-8c3477310f9e +C3N-04701 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04701.evidence_1.a5c1bd98-d6d5-4c56-9678-10c596b60c35_wgs_gdc_realn.bam 42786274 BAM 8bfd3a6b6fe7acb0528293640bc6deba C3N-04701.WGS.T.hg38 5305bb2a-ddee-4206-92c2-f11f72ce674c C3N-04701.WGS.N.hg38 ff0ab924-09a0-4169-af5a-304760c894ed 0491b370-df88-4ad9-8795-8c3477310f9e +C3N-04701 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04701.final.SV.WGS.vcf 202330 VCF f4f8f26d76813f58a42adf1dc7b07387 C3N-04701.WGS.T.hg38 5305bb2a-ddee-4206-92c2-f11f72ce674c C3N-04701.WGS.N.hg38 ff0ab924-09a0-4169-af5a-304760c894ed 0491b370-df88-4ad9-8795-8c3477310f9e +C3N-04713 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04713.evidence_0.abcb9f24-8fc3-4847-81c8-9ba7a653708b_wgs_gdc_realn.bam 48914295 BAM 36e41c421286b3756c5ef3bc8e7066b4 C3N-04713.WGS.T.hg38 f3b5fe92-eb38-46c1-a633-55a42207db59 C3N-04713.WGS.N.hg38 fe118dcc-3a00-4479-a4cb-afe06060bf5f 6c830eb1-81d4-47ef-98da-f75ea9953a4a +C3N-04713 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04713.evidence_1.12d287b2-1cfd-443b-8d67-6b536b763eb1_wgs_gdc_realn.bam 45970395 BAM 03ce8fc591618045588e483b1c473cfa C3N-04713.WGS.T.hg38 f3b5fe92-eb38-46c1-a633-55a42207db59 C3N-04713.WGS.N.hg38 fe118dcc-3a00-4479-a4cb-afe06060bf5f 6c830eb1-81d4-47ef-98da-f75ea9953a4a +C3N-04713 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-04713.final.SV.WGS.vcf 159719 VCF bb03e2b7645903162d1844bfbc4dd526 C3N-04713.WGS.T.hg38 f3b5fe92-eb38-46c1-a633-55a42207db59 C3N-04713.WGS.N.hg38 fe118dcc-3a00-4479-a4cb-afe06060bf5f 6c830eb1-81d4-47ef-98da-f75ea9953a4a +C3N-05039 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05039.evidence_0.e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 54679295 BAM a070655eec05b98d3b40493e12f92b57 C3N-05039.WGS.T.hg38 03e5daf7-cc04-4a52-855a-8f776d8655a5 C3N-05039.WGS.N.hg38 05fa37fb-0df8-498f-8f7f-14f9a735c215 99e9382b-b729-4ca2-92f2-b5ae388da17c +C3N-05039 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05039.evidence_1.fe17632c-e4bd-4c42-aa43-255206b1a97b_wgs_gdc_realn.bam 62811726 BAM 8de7788dbd05ba165d77a96292c0f808 C3N-05039.WGS.T.hg38 03e5daf7-cc04-4a52-855a-8f776d8655a5 C3N-05039.WGS.N.hg38 05fa37fb-0df8-498f-8f7f-14f9a735c215 99e9382b-b729-4ca2-92f2-b5ae388da17c +C3N-05039 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05039.final.SV.WGS.vcf 156430 VCF 12a88956b47715904591fc0837282836 C3N-05039.WGS.T.hg38 03e5daf7-cc04-4a52-855a-8f776d8655a5 C3N-05039.WGS.N.hg38 05fa37fb-0df8-498f-8f7f-14f9a735c215 99e9382b-b729-4ca2-92f2-b5ae388da17c +C3N-05078 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05078.evidence_0.0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wgs_gdc_realn.bam 57134551 BAM 9d97582696114156a7c1f6aa5556839c C3N-05078.WGS.T.hg38 ecbfef91-e2f0-4b29-926b-a3611f97331f C3N-05078.WGS.N.hg38 aaca2d93-2662-44b2-b37b-e819c5a0d346 0b150c83-0c2b-4432-83e6-796d77837cf8 +C3N-05078 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05078.evidence_1.81268520-0222-48f1-8b38-865b7d274018_wgs_gdc_realn.bam 44385415 BAM 5f63d3f45a930f354ad90cd7db7e1929 C3N-05078.WGS.T.hg38 ecbfef91-e2f0-4b29-926b-a3611f97331f C3N-05078.WGS.N.hg38 aaca2d93-2662-44b2-b37b-e819c5a0d346 0b150c83-0c2b-4432-83e6-796d77837cf8 +C3N-05078 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05078.final.SV.WGS.vcf 171163 VCF 31253e2e098235662d69bb3bf1daf4cf C3N-05078.WGS.T.hg38 ecbfef91-e2f0-4b29-926b-a3611f97331f C3N-05078.WGS.N.hg38 aaca2d93-2662-44b2-b37b-e819c5a0d346 0b150c83-0c2b-4432-83e6-796d77837cf8 +C3N-05079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05079.evidence_0.cc6e30e4-a477-48c7-b201-528211f3d5df_wgs_gdc_realn.bam 47331101 BAM b69b460f2553e73d824956236271d290 C3N-05079.WGS.T.hg38 191a2a9b-da05-4186-8e73-a43dad489dcb C3N-05079.WGS.N.hg38 77f97a94-18b9-4cb0-8b97-498eb2a9b441 c1c4863a-4f35-4520-9349-6f09b1e28240 +C3N-05079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05079.evidence_1.7c9f892f-1bd3-492d-bae7-09c323a90ab8_wgs_gdc_realn.bam 49470778 BAM f0106ad27330e6499a404d70fd43a77a C3N-05079.WGS.T.hg38 191a2a9b-da05-4186-8e73-a43dad489dcb C3N-05079.WGS.N.hg38 77f97a94-18b9-4cb0-8b97-498eb2a9b441 c1c4863a-4f35-4520-9349-6f09b1e28240 +C3N-05079 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05079.final.SV.WGS.vcf 178097 VCF 07f2c63c0dba9de37e3d0d588c89ff10 C3N-05079.WGS.T.hg38 191a2a9b-da05-4186-8e73-a43dad489dcb C3N-05079.WGS.N.hg38 77f97a94-18b9-4cb0-8b97-498eb2a9b441 c1c4863a-4f35-4520-9349-6f09b1e28240 +C3N-05080 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05080.evidence_0.7ab7860a-416f-40a9-ad13-90c49c392507_wgs_gdc_realn.bam 73324646 BAM d922aa62534ac1cec90f131171b1c7b7 C3N-05080.WGS.T.hg38 188683b2-4b05-4ba7-af25-da55de8055fe C3N-05080.WGS.N.hg38 fede5ded-dfdb-46d0-a96c-db681ead09da 37aba1d3-5f39-4a2e-8e5c-8411fbe028a7 +C3N-05080 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05080.evidence_1.9e4c78c3-fe39-47ab-8ede-e7a9843de8ae_wgs_gdc_realn.bam 50267820 BAM ae75fbc12b127d639557b6efc1de3e29 C3N-05080.WGS.T.hg38 188683b2-4b05-4ba7-af25-da55de8055fe C3N-05080.WGS.N.hg38 fede5ded-dfdb-46d0-a96c-db681ead09da 37aba1d3-5f39-4a2e-8e5c-8411fbe028a7 +C3N-05080 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05080.final.SV.WGS.vcf 147923 VCF c3279f242f4cea2c8375a47186185598 C3N-05080.WGS.T.hg38 188683b2-4b05-4ba7-af25-da55de8055fe C3N-05080.WGS.N.hg38 fede5ded-dfdb-46d0-a96c-db681ead09da 37aba1d3-5f39-4a2e-8e5c-8411fbe028a7 +C3N-05100 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05100.evidence_0.39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wgs_gdc_realn.bam 41185296 BAM 86af72627f2d53f645ebb1fb43a4f7e2 C3N-05100.WGS.T.hg38 e32667cf-b7d8-4ec2-a63a-17497134fd97 C3N-05100.WGS.N.hg38 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f bec4f465-4852-4c71-ae64-9699f6b2a96d +C3N-05100 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05100.evidence_1.5ef62f88-5293-4a68-a523-50eacbd2dc9b_wgs_gdc_realn.bam 37887158 BAM defae4a16b0be85f8c738be3345677d9 C3N-05100.WGS.T.hg38 e32667cf-b7d8-4ec2-a63a-17497134fd97 C3N-05100.WGS.N.hg38 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f bec4f465-4852-4c71-ae64-9699f6b2a96d +C3N-05100 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05100.final.SV.WGS.vcf 167048 VCF 34df17660829d48464bcaa80127116eb C3N-05100.WGS.T.hg38 e32667cf-b7d8-4ec2-a63a-17497134fd97 C3N-05100.WGS.N.hg38 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f bec4f465-4852-4c71-ae64-9699f6b2a96d +C3N-05114 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05114.evidence_0.e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 55906423 BAM 2193138f697168df99ce0edbe14e2e6a C3N-05114.WGS.T.hg38 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 C3N-05114.WGS.N.hg38 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae a3319004-1353-469c-86a9-3149d1310269 +C3N-05114 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05114.evidence_1.5169afe8-1fb1-459b-b5b6-f28129bc1de1_wgs_gdc_realn.bam 69889030 BAM 7a110d389f35204e5d25ba1f91602370 C3N-05114.WGS.T.hg38 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 C3N-05114.WGS.N.hg38 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae a3319004-1353-469c-86a9-3149d1310269 +C3N-05114 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05114.final.SV.WGS.vcf 167180 VCF 9f67d86296814bdc6f41efb5124e801e C3N-05114.WGS.T.hg38 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 C3N-05114.WGS.N.hg38 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae a3319004-1353-469c-86a9-3149d1310269 +C3N-05135 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05135.evidence_0.d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 52749016 BAM 6575e57768de934a1d3a8103d46b70f1 C3N-05135.WGS.T.hg38 c50b159a-8d6b-4760-afff-db1dce9ff738 C3N-05135.WGS.N.hg38 5dc48332-6ed2-417b-958f-c1595135fa9e 5955f3f5-1227-407c-b50e-69702129162f +C3N-05135 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05135.evidence_1.f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wgs_gdc_realn.bam 57416926 BAM 71eb771573d619491cb47ee732e0fc31 C3N-05135.WGS.T.hg38 c50b159a-8d6b-4760-afff-db1dce9ff738 C3N-05135.WGS.N.hg38 5dc48332-6ed2-417b-958f-c1595135fa9e 5955f3f5-1227-407c-b50e-69702129162f +C3N-05135 GBM WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WGS_SV_v1.1_batch821_20210916/C3N-05135.final.SV.WGS.vcf 150744 VCF a764c6bd3a7e94da75c0171bab038306 C3N-05135.WGS.T.hg38 c50b159a-8d6b-4760-afff-db1dce9ff738 C3N-05135.WGS.N.hg38 5dc48332-6ed2-417b-958f-c1595135fa9e 5955f3f5-1227-407c-b50e-69702129162f +C3N-05629 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05629.evidence_0.52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wgs_gdc_realn.bam 54913637 BAM a391d23ae060efd4ae8e5be1c6570e17 C3N-05629.WGS.T.hg38 c1ae0af0-8e3d-48fd-81da-7364eaca0c00 C3N-05629.WGS.N.hg38 f50609fc-9226-4f82-a225-48e4491d6e1a 30f4dcea-2269-4abc-a52f-dad696398f70 +C3N-05629 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05629.evidence_1.392cdd57-f49f-436c-88b4-556f2a60586a_wgs_gdc_realn.bam 47983299 BAM 880bbdc96a97bb0002818972987bf717 C3N-05629.WGS.T.hg38 c1ae0af0-8e3d-48fd-81da-7364eaca0c00 C3N-05629.WGS.N.hg38 f50609fc-9226-4f82-a225-48e4491d6e1a 30f4dcea-2269-4abc-a52f-dad696398f70 +C3N-05629 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05629.final.SV.WGS.vcf 167859 VCF af989788419338af7b7e6821844767ce C3N-05629.WGS.T.hg38 c1ae0af0-8e3d-48fd-81da-7364eaca0c00 C3N-05629.WGS.N.hg38 f50609fc-9226-4f82-a225-48e4491d6e1a 30f4dcea-2269-4abc-a52f-dad696398f70 +C3N-05914 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05914.evidence_0.8f68f68a-13a5-4085-a115-17a6701ab6fd_wgs_gdc_realn.bam 49021032 BAM e77522ecb3cf1d0dfdb71f1e227012ac C3N-05914.WGS.T.hg38 e7d3a961-5650-41cd-856b-3073994a9331 C3N-05914.WGS.N.hg38 a5b9dad9-61b5-4b00-b76e-d1964d9932bb 158ecfc7-9bd9-4904-be49-c21f1195c845 +C3N-05914 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05914.evidence_1.50080744-d8e0-430b-93a5-77eddd53834b_wgs_gdc_realn.bam 48908344 BAM 6a693ff6fe1e1e2673fc3b2d24f68d4a C3N-05914.WGS.T.hg38 e7d3a961-5650-41cd-856b-3073994a9331 C3N-05914.WGS.N.hg38 a5b9dad9-61b5-4b00-b76e-d1964d9932bb 158ecfc7-9bd9-4904-be49-c21f1195c845 +C3N-05914 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05914.final.SV.WGS.vcf 238508 VCF 054fa234f58d4c16f725ad5c5bb6cdde C3N-05914.WGS.T.hg38 e7d3a961-5650-41cd-856b-3073994a9331 C3N-05914.WGS.N.hg38 a5b9dad9-61b5-4b00-b76e-d1964d9932bb 158ecfc7-9bd9-4904-be49-c21f1195c845 +C3N-05915 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05915.evidence_0.559686d4-6154-46cb-9117-0f8891718a04_wgs_gdc_realn.bam 51130639 BAM 8262fd70831d4a6946e6dfb7fbc43376 C3N-05915.WGS.T.hg38 d5ffc59c-b2ae-4689-b4d0-6547a2d77ae3 C3N-05915.WGS.N.hg38 e12e825f-4ce5-4a46-8f95-1c68bc93eb39 4ee1e404-d553-470b-885d-b92adb0be4e5 +C3N-05915 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05915.evidence_1.3c742abb-e129-49e8-92cf-6af9ce1804eb_wgs_gdc_realn.bam 52240860 BAM 5dab0a57f832544ee52543bc2c53a3b1 C3N-05915.WGS.T.hg38 d5ffc59c-b2ae-4689-b4d0-6547a2d77ae3 C3N-05915.WGS.N.hg38 e12e825f-4ce5-4a46-8f95-1c68bc93eb39 4ee1e404-d553-470b-885d-b92adb0be4e5 +C3N-05915 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05915.final.SV.WGS.vcf 154735 VCF 250eaf8adc194bc463b5b3eda97b2b23 C3N-05915.WGS.T.hg38 d5ffc59c-b2ae-4689-b4d0-6547a2d77ae3 C3N-05915.WGS.N.hg38 e12e825f-4ce5-4a46-8f95-1c68bc93eb39 4ee1e404-d553-470b-885d-b92adb0be4e5 +C3N-05923 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05923.evidence_0.e7d93998-6d00-4922-885b-9cbf6087243a_wgs_gdc_realn.bam 44343612 BAM 4337055e07c6111d1935c5323ba1c899 C3N-05923.WGS.T.hg38 5c0f4d7b-2228-4bb3-b955-0a61ba2b0705 C3N-05923.WGS.N.hg38 97e58f07-e0c8-401b-8cc0-ca458145607e f4e1569e-5a02-4143-b92d-bf476f93738e +C3N-05923 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05923.evidence_1.c318d792-3d62-40bb-87bd-a98703d4c4b2_wgs_gdc_realn.bam 59458921 BAM c6d72025c43eb775814a51b79eea5a31 C3N-05923.WGS.T.hg38 5c0f4d7b-2228-4bb3-b955-0a61ba2b0705 C3N-05923.WGS.N.hg38 97e58f07-e0c8-401b-8cc0-ca458145607e f4e1569e-5a02-4143-b92d-bf476f93738e +C3N-05923 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05923.final.SV.WGS.vcf 240342 VCF e35c9b20093cde36765794e0de464a34 C3N-05923.WGS.T.hg38 5c0f4d7b-2228-4bb3-b955-0a61ba2b0705 C3N-05923.WGS.N.hg38 97e58f07-e0c8-401b-8cc0-ca458145607e f4e1569e-5a02-4143-b92d-bf476f93738e +C3N-05929 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05929.evidence_0.e3bf416b-3d08-4d1b-bec4-808e55c7788c_wgs_gdc_realn.bam 39741728 BAM c58477c5427acacb6c07a2d671366895 C3N-05929.WGS.T.hg38 c5d518a3-fc69-4d7b-a719-0aad38abe43a C3N-05929.WGS.N.hg38 823dda5b-ff15-4a66-b28b-de0632850623 548ac155-348a-4b88-8947-8a2c2678ade5 +C3N-05929 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05929.evidence_1.23fa88f9-9293-406b-bc21-2928ff12bc8b_wgs_gdc_realn.bam 37944398 BAM 5021ec69609cce0e32570d9462a309eb C3N-05929.WGS.T.hg38 c5d518a3-fc69-4d7b-a719-0aad38abe43a C3N-05929.WGS.N.hg38 823dda5b-ff15-4a66-b28b-de0632850623 548ac155-348a-4b88-8947-8a2c2678ade5 +C3N-05929 LSCC WGS_SV v1.1 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_WGS_SV_v1.1_batch821_20210916/C3N-05929.final.SV.WGS.vcf 150674 VCF f6bf88b724a385b370991a72989e2864 C3N-05929.WGS.T.hg38 c5d518a3-fc69-4d7b-a719-0aad38abe43a C3N-05929.WGS.N.hg38 823dda5b-ff15-4a66-b28b-de0632850623 548ac155-348a-4b88-8947-8a2c2678ade5