From 995d2b9c19d15cee386a989e3c4680adc6e4dab8 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Wed, 20 Jan 2021 18:00:41 -0600 Subject: [PATCH] Download to storage1 of 31 UCEC WGS and all WGS on katmai * 38.0027 Tb in 436 files * Work dir: /storage1/fs1/home1/Active/home/m.wyczalkowski/Projects/CPTAC3/import/20210116.WGS-katmai --- BamMap/storage1.BamMap.dat | 438 ++++++++++++++++++++++++++++++++++++- 1 file changed, 437 insertions(+), 1 deletion(-) diff --git a/BamMap/storage1.BamMap.dat b/BamMap/storage1.BamMap.dat index af5e83f..5dc7c03 100644 --- a/BamMap/storage1.BamMap.dat +++ b/BamMap/storage1.BamMap.dat @@ -27,11 +27,15 @@ C3L-00010.WGS.T.hg38 C3L-00010 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-00011.WGS.A.hg38 C3L-00011 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f6c22b5-83c0-4518-bc4e-a5db09f87e97/5637db92-8716-4190-8c2e-9a32bb099cf6_wgs_gdc_realn.bam 94084523957 BAM hg38 8f6c22b5-83c0-4518-bc4e-a5db09f87e97 storage1 C3L-00011.WGS.N.hg38 C3L-00011 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10bbe16c-ba5d-4489-84d1-dbdd5ffa54ed/1fd51af9-c67f-4c54-8c8e-db4aef40d5ad_gdc_realn.bam 211685129229 BAM hg38 10bbe16c-ba5d-4489-84d1-dbdd5ffa54ed storage1 C3L-00011.WGS.T.hg38 C3L-00011 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/215cedd8-5ce2-4c50-a85d-9f7197e6472c/f47b3035-cf5e-4905-8859-1459781618fc_gdc_realn.bam 189303516909 BAM hg38 215cedd8-5ce2-4c50-a85d-9f7197e6472c storage1 +C3L-00016.WGS.N.hg38 C3L-00016 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7afe875f-ea77-47f6-a840-2b6f5ac8d749/65158bcf-b42e-4e35-aa37-aad195b41e03_gdc_realn.bam 97699854646 BAM hg38 7afe875f-ea77-47f6-a840-2b6f5ac8d749 storage1 +C3L-00016.WGS.T.hg38 C3L-00016 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0d761fc-b161-4a9d-9f0c-66d30fba4c08/0eb51bef-799b-4c17-89dc-b5e15f13d7bc_gdc_realn.bam 88511055555 BAM hg38 d0d761fc-b161-4a9d-9f0c-66d30fba4c08 storage1 C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9fbbc31e-053a-4d23-8a67-2fdff79e1141/d82ec42c-7c4f-4e59-ba88-1c883b9c6732.rna_seq.genomic.gdc_realn.bam 9981542710 BAM hg38 9fbbc31e-053a-4d23-8a67-2fdff79e1141 storage1 C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/435f1318-6e70-4a62-9321-b0ca736e9d14/d51783ce-12f6-46ca-86f1-10d85611cf17.rna_seq.genomic.gdc_realn.bam 7421030916 BAM hg38 435f1318-6e70-4a62-9321-b0ca736e9d14 storage1 C3L-00017.WGS.A.hg38 C3L-00017 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f60e0cf4-9070-4d80-a522-e5eda6e81c1e/3daadcf0-24a3-4f29-a9e3-cb177cc7004e_wgs_gdc_realn.bam 76800590904 BAM hg38 f60e0cf4-9070-4d80-a522-e5eda6e81c1e storage1 C3L-00017.WGS.N.hg38 C3L-00017 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2eb95024-ed2d-471d-bcf7-199ef3348719/6aa9462a-bda4-4c7e-9049-dfd4e79fab18_gdc_realn.bam 113878540714 BAM hg38 2eb95024-ed2d-471d-bcf7-199ef3348719 storage1 C3L-00017.WGS.T.hg38 C3L-00017 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca8326ec-c84d-4efa-a39d-25f53e5a8c2a/90daf6b6-b405-431c-bb0d-6f52df3e6ef9_gdc_realn.bam 112204550063 BAM hg38 ca8326ec-c84d-4efa-a39d-25f53e5a8c2a storage1 +C3L-00019.WGS.N.hg38 C3L-00019 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2aa44cc1-38d3-49c3-a03c-c6396c979491/383c9539-9c57-47c4-90f3-c0453068ff6f_gdc_realn.bam 130962659926 BAM hg38 2aa44cc1-38d3-49c3-a03c-c6396c979491 storage1 +C3L-00019.WGS.T.hg38 C3L-00019 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a7a4858-0863-4975-a72a-dbb110efd70f/8cb0498b-f2ca-40d3-9850-0354f0c53f1e_gdc_realn.bam 120614061544 BAM hg38 8a7a4858-0863-4975-a72a-dbb110efd70f storage1 C3L-00026.WGS.A.hg38 C3L-00026 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29bdccbd-b072-49d0-bfe1-721c3319a29a/e7e7be46-4ae9-4c07-8354-c3c310ea060a_wgs_gdc_realn.bam 83508451153 BAM hg38 29bdccbd-b072-49d0-bfe1-721c3319a29a storage1 C3L-00026.WGS.N.hg38 C3L-00026 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dcb94c3-b18b-4a17-8c51-3bb6beafa8ba/4f432fe5-856b-4678-bd0c-e3170f1bf7d5_gdc_realn.bam 189691572924 BAM hg38 6dcb94c3-b18b-4a17-8c51-3bb6beafa8ba storage1 C3L-00026.WGS.T.hg38 C3L-00026 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f195488e-ec5c-446b-8f99-ec53af93c25c/7fb72fd0-9f8d-46d5-bd34-9216e4be58ff_gdc_realn.bam 205257026715 BAM hg38 f195488e-ec5c-446b-8f99-ec53af93c25c storage1 @@ -43,9 +47,14 @@ C3L-00079.WGS.T.hg38 C3L-00079 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-00080.WGS.A.hg38 C3L-00080 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39a75785-7d97-4ddc-9b7e-1b847d72e8e3/367111cb-498a-48db-8c12-5fb198c1f435_wgs_gdc_realn.bam 119427123874 BAM hg38 39a75785-7d97-4ddc-9b7e-1b847d72e8e3 storage1 C3L-00080.WGS.N.hg38 C3L-00080 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b0719f5-2549-466c-892c-df316fff7fe0/0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 200634122075 BAM hg38 9b0719f5-2549-466c-892c-df316fff7fe0 storage1 C3L-00080.WGS.T.hg38 C3L-00080 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7b17e10f-1802-41a3-9d39-98d7f4f7ab40/402105a0-263d-474b-b32d-11a7ad92150f_gdc_realn.bam 217796501697 BAM hg38 7b17e10f-1802-41a3-9d39-98d7f4f7ab40 storage1 +C3L-00081.WGS.A.hg38 C3L-00081 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7de8530-f1ff-412e-8553-2f44dec09d49/48433c5e-7746-4ae8-888a-3c9390b460d4_wgs_gdc_realn.bam 91867368039 BAM hg38 c7de8530-f1ff-412e-8553-2f44dec09d49 storage1 +C3L-00081.WGS.N.hg38 C3L-00081 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4571e0d7-4c43-4ff8-aad2-f39bc4964cdf/5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 191650804479 BAM hg38 4571e0d7-4c43-4ff8-aad2-f39bc4964cdf storage1 +C3L-00081.WGS.T.hg38 C3L-00081 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb4885fd-11cd-4eca-a876-35c74daf9feb/499d2ebb-679e-4720-8b86-3c989769d905_gdc_realn.bam 211055991444 BAM hg38 cb4885fd-11cd-4eca-a876-35c74daf9feb storage1 C3L-00083.WGS.A.hg38 C3L-00083 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8535bce5-31d8-4f7b-bbb7-ef9ed49c1517/6aa4d1fe-35eb-4db1-9427-3398beedae1d_wgs_gdc_realn.bam 86037221741 BAM hg38 8535bce5-31d8-4f7b-bbb7-ef9ed49c1517 storage1 C3L-00083.WGS.N.hg38 C3L-00083 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ac479d6-5d12-4169-9908-a789d8fbe546/2eddaefa-786d-42e4-ab02-e94a893a9441_wgs_gdc_realn.bam 97867709363 BAM hg38 7ac479d6-5d12-4169-9908-a789d8fbe546 storage1 C3L-00083.WGS.T.hg38 C3L-00083 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1ea371a-d8a3-4b25-aee2-a384da065956/560018e3-da42-4581-b77d-db661cb3a7b4_wgs_gdc_realn.bam 96680796121 BAM hg38 e1ea371a-d8a3-4b25-aee2-a384da065956 storage1 +C3L-00084.WGS.N.hg38 C3L-00084 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/edc0e018-cb28-4bf3-b1ff-39490924e401/b0c06553-0088-41fd-a0de-fecc9bb6574a_gdc_realn.bam 203220813830 BAM hg38 edc0e018-cb28-4bf3-b1ff-39490924e401 storage1 +C3L-00084.WGS.T.hg38 C3L-00084 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6eac4de-7732-414b-bcd2-de1bab0a00a3/e58981f9-0125-452a-9a6a-ad0c3116ebdd_gdc_realn.bam 201242866841 BAM hg38 f6eac4de-7732-414b-bcd2-de1bab0a00a3 storage1 C3L-00086.WGS.N.hg38 C3L-00086 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5001f32e-96d1-4307-82d2-5eea376f4c5c/8fc6c425-9cb5-49f4-86da-ea1361e7a692_wgs_gdc_realn.bam 92368698049 BAM hg38 5001f32e-96d1-4307-82d2-5eea376f4c5c storage1 C3L-00086.WGS.T.hg38 C3L-00086 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36c203cf-6035-41da-909d-466fc33a4315/5eebe409-6c81-40fa-a496-e1fa53b2de64_wgs_gdc_realn.bam 91710617793 BAM hg38 36c203cf-6035-41da-909d-466fc33a4315 storage1 C3L-00088.WGS.A.hg38 C3L-00088 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bcbf89a-9b67-4003-ade8-1d46318a987e/60bdecd2-bd6f-4e64-a096-798dd3d5d945_wgs_gdc_realn.bam 77216653403 BAM hg38 8bcbf89a-9b67-4003-ade8-1d46318a987e storage1 @@ -82,6 +91,8 @@ C3L-00103.WGS.T.HET_oyo53.hg38 C3L-00103 CCRCC WGS tumor /storage1/fs1/m.wyczalk C3L-00103.WGS.T.hg38 C3L-00103 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1bc9301e-0f79-401d-9a81-e96a5675005e/c5a3c455-b1f3-4125-a6f5-401385ab2720_gdc_realn.bam 101056769537 BAM hg38 1bc9301e-0f79-401d-9a81-e96a5675005e storage1 C3L-00104.RNA-Seq.chimeric.T.hg38 C3L-00104 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c0ed322-f613-4bb9-bb87-01424e8b4d90/e86802b2-71d4-41e7-9698-ea5e0bc1a673.rna_seq.chimeric.gdc_realn.bam 59626720 BAM hg38 4c0ed322-f613-4bb9-bb87-01424e8b4d90 storage1 C3L-00104.RNA-Seq.transcriptome.T.hg38 C3L-00104 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fccb593e-bb76-4223-b50e-2d4cf2dc8283/e86802b2-71d4-41e7-9698-ea5e0bc1a673.rna_seq.transcriptome.gdc_realn.bam 9652542224 BAM hg38 fccb593e-bb76-4223-b50e-2d4cf2dc8283 storage1 +C3L-00104.WGS.N.hg38 C3L-00104 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b671161a-35d8-41ec-af05-22e5d61df42a/27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wgs_gdc_realn.bam 96242353366 BAM hg38 b671161a-35d8-41ec-af05-22e5d61df42a storage1 +C3L-00104.WGS.T.hg38 C3L-00104 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1be16bb-3b12-40f2-ac23-99fabddc615a/d36cf415-f716-4e50-a949-a06459cd5277_wgs_gdc_realn.bam 86365683446 BAM hg38 d1be16bb-3b12-40f2-ac23-99fabddc615a storage1 C3L-00136.WGS.N.hg38 C3L-00136 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df7dc177-6120-49ae-9046-fffbeed04583/2a17380f-bcb1-4de3-8934-af1d4b914892_gdc_realn.bam 90461500957 BAM hg38 df7dc177-6120-49ae-9046-fffbeed04583 storage1 C3L-00136.WGS.T.hg38 C3L-00136 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cb2d2f8-a700-4dbf-bc69-cb34274209b9/0da07c96-e95e-45df-b12f-8c745696f271_gdc_realn.bam 99707787740 BAM hg38 9cb2d2f8-a700-4dbf-bc69-cb34274209b9 storage1 C3L-00137.WGS.N.hg38 C3L-00137 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3183b3b5-5fdf-4f74-928e-7493bd04c1eb/552d7534-1fd1-490b-8751-9dff1bf55569_gdc_realn.bam 86049366669 BAM hg38 3183b3b5-5fdf-4f74-928e-7493bd04c1eb storage1 @@ -114,13 +125,19 @@ C3L-00189.WGS.N.hg38 C3L-00189 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-00189.WGS.T.hg38 C3L-00189 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c754b34f-3547-411c-8e38-fd847d23d130/89bd375b-f0de-4c53-bc3a-0857dd2a02ba_gdc_realn.bam 148094086812 BAM hg38 c754b34f-3547-411c-8e38-fd847d23d130 storage1 C3L-00263.WGS.N.hg38 C3L-00263 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6590064c-552c-46e9-b432-1689f86250c1/2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 83185306069 BAM hg38 6590064c-552c-46e9-b432-1689f86250c1 storage1 C3L-00263.WGS.T.hg38 C3L-00263 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4312fc01-aaf2-4c9e-998a-4aaf2bbf37ff/f0c8f826-d8fd-4c98-9717-6cca974055dc_gdc_realn.bam 93780859548 BAM hg38 4312fc01-aaf2-4c9e-998a-4aaf2bbf37ff storage1 +C3L-00265.WGS.N.hg38 C3L-00265 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49abd759-c4f2-4a40-8f59-153c9bb19170/6a73f3b9-56b8-4007-ad6f-7dbc00f85a4c_gdc_realn.bam 108566070050 BAM hg38 49abd759-c4f2-4a40-8f59-153c9bb19170 storage1 +C3L-00265.WGS.T.hg38 C3L-00265 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/235e63ba-8a7d-4183-b146-4bbef059d377/19a44d3b-775c-44db-aaf0-f16fe219c7b9_gdc_realn.bam 92485616116 BAM hg38 235e63ba-8a7d-4183-b146-4bbef059d377 storage1 C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5044465f-6d5a-4f30-b024-c0dbb7144ad1/a4f3c3ff-60d1-4ca3-897f-785dcf1d25d0.rna_seq.genomic.gdc_realn.bam 8056180233 BAM hg38 5044465f-6d5a-4f30-b024-c0dbb7144ad1 storage1 C3L-00277.WGS.A.hg38 C3L-00277 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf7da377-8b18-4680-94f9-6eeea19620b7/c7dd538d-a66e-4698-8f58-d5c2f6863d0c_wgs_gdc_realn.bam 82522674490 BAM hg38 bf7da377-8b18-4680-94f9-6eeea19620b7 storage1 C3L-00277.WGS.N.hg38 C3L-00277 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a4be4e7-4ade-43d1-bf0d-05bf7f75f777/596f83a1-5e9c-451b-9087-fbb18efe8447_gdc_realn.bam 95139814329 BAM hg38 5a4be4e7-4ade-43d1-bf0d-05bf7f75f777 storage1 C3L-00277.WGS.T.hg38 C3L-00277 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdc9052b-65b1-40bf-befd-3f8f2669f7b0/5d5bbdb1-74e4-4f1d-a025-df1959b77aa1_gdc_realn.bam 122527571156 BAM hg38 fdc9052b-65b1-40bf-befd-3f8f2669f7b0 storage1 +C3L-00278.WGS.N.hg38 C3L-00278 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d799361e-0e2c-478f-a3b8-4e371dd47ea3/d4bac28e-6b0d-4f9b-8bb6-9785ccd8d8ec_gdc_realn.bam 115293749793 BAM hg38 d799361e-0e2c-478f-a3b8-4e371dd47ea3 storage1 +C3L-00278.WGS.T.hg38 C3L-00278 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88697b09-149a-4099-9f68-a1aed95fefe6/a2c60332-44c4-4103-9333-c22d7ae59578_gdc_realn.bam 109090599494 BAM hg38 88697b09-149a-4099-9f68-a1aed95fefe6 storage1 C3L-00279.WGS.A.hg38 C3L-00279 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d8333a3-6e19-45b1-bbe8-a25e3e3d018c/59fb1c78-43fc-40d8-bdb5-4722c0670842_wgs_gdc_realn.bam 82603925963 BAM hg38 5d8333a3-6e19-45b1-bbe8-a25e3e3d018c storage1 C3L-00279.WGS.N.hg38 C3L-00279 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22224aab-7f41-4ae5-8acd-a93d161cf396/65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 133995229320 BAM hg38 22224aab-7f41-4ae5-8acd-a93d161cf396 storage1 C3L-00279.WGS.T.hg38 C3L-00279 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1942b0b8-95ec-4524-b31c-f0a50f42708f/d974bcf0-cacc-4d3c-9ad7-c3851c1e2cb1_gdc_realn.bam 103365534756 BAM hg38 1942b0b8-95ec-4524-b31c-f0a50f42708f storage1 +C3L-00349.WGS.N.hg38 C3L-00349 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b66d491-66d9-463b-8def-7f9ce1152199/5996a9d5-3f37-40fd-8c62-32549e1189fb_gdc_realn.bam 88572225867 BAM hg38 4b66d491-66d9-463b-8def-7f9ce1152199 storage1 +C3L-00349.WGS.T.hg38 C3L-00349 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1452eba8-9c52-4a1a-9a2a-4ba70d24ef47/4f397f83-cb82-420f-b319-12a156ff2d7f_gdc_realn.bam 114912966389 BAM hg38 1452eba8-9c52-4a1a-9a2a-4ba70d24ef47 storage1 C3L-00356.WGS.N.hg38 C3L-00356 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b2d66ef-8fc7-47b4-9717-2dc51259c0a6/0d1a19ed-b1f4-4d0f-9eff-5922afcb6cbe_gdc_realn.bam 87764016454 BAM hg38 8b2d66ef-8fc7-47b4-9717-2dc51259c0a6 storage1 C3L-00356.WGS.T.hg38 C3L-00356 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b841bd14-fc26-40a4-b89b-f7fc50cdc513/e6e1c2a6-27c3-4d55-87ed-6cd0ab0fd6b6_gdc_realn.bam 91675515120 BAM hg38 b841bd14-fc26-40a4-b89b-f7fc50cdc513 storage1 C3L-00358.WGS.N.hg38 C3L-00358 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb62f2d2-b146-490a-bc13-b209c265d28d/8927cd25-7348-4319-8a9b-248fc0bc8e56_gdc_realn.bam 82314231902 BAM hg38 bb62f2d2-b146-490a-bc13-b209c265d28d storage1 @@ -137,6 +154,8 @@ C3L-00362.WGS.N.hg38 C3L-00362 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-00362.WGS.T.hg38 C3L-00362 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3af7e6a3-594d-4830-a5ea-cef88e23f906/cc81280d-f906-4e45-a988-000aeb16fcdf_gdc_realn.bam 104618646070 BAM hg38 3af7e6a3-594d-4830-a5ea-cef88e23f906 storage1 C3L-00365.RNA-Seq.chimeric.T.hg38 C3L-00365 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e40c847-a50b-4144-8f84-e02628c2833b/b44988b3-2906-455f-9a03-98e881ec0826.rna_seq.chimeric.gdc_realn.bam 134800859 BAM hg38 3e40c847-a50b-4144-8f84-e02628c2833b storage1 C3L-00365.RNA-Seq.transcriptome.T.hg38 C3L-00365 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe304d8-7715-4b45-8a50-396f7a3d3f3e/b44988b3-2906-455f-9a03-98e881ec0826.rna_seq.transcriptome.gdc_realn.bam 9245106889 BAM hg38 fbe304d8-7715-4b45-8a50-396f7a3d3f3e storage1 +C3L-00365.WGS.N.hg38 C3L-00365 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d6b2cf2-0e59-4d7e-8189-7ce030358a1e/1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 125945749891 BAM hg38 4d6b2cf2-0e59-4d7e-8189-7ce030358a1e storage1 +C3L-00365.WGS.T.hg38 C3L-00365 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0976b529-4cf1-4ce0-9777-5700dc51cede/fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 120800504632 BAM hg38 0976b529-4cf1-4ce0-9777-5700dc51cede storage1 C3L-00368.WGS.A.hg38 C3L-00368 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/434dac67-26a6-440c-83ac-a6a706b6c51f/eb9967de-974e-4c8b-b16c-4da0dd47f3ed_wgs_gdc_realn.bam 85674261409 BAM hg38 434dac67-26a6-440c-83ac-a6a706b6c51f storage1 C3L-00368.WGS.N.hg38 C3L-00368 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d730cefc-a602-472e-8450-43a4ee8923b3/d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 99365652695 BAM hg38 d730cefc-a602-472e-8450-43a4ee8923b3 storage1 C3L-00368.WGS.T.hg38 C3L-00368 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52e3f28d-d03b-4a11-bc14-c9b906921610/72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 124826566318 BAM hg38 52e3f28d-d03b-4a11-bc14-c9b906921610 storage1 @@ -157,6 +176,9 @@ C3L-00412.WGS.N.hg38 C3L-00412 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-00412.WGS.T.hg38 C3L-00412 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6057d4a-f89b-4a98-9ba2-b0eb23bc374d/9cc4a810-0c4e-4b3e-a95c-bc041d77d81d_gdc_realn.bam 94600529937 BAM hg38 f6057d4a-f89b-4a98-9ba2-b0eb23bc374d storage1 C3L-00413.WGS.N.hg38 C3L-00413 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22c5648f-e238-4e98-b2d5-32d41ab94314/92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 100033312069 BAM hg38 22c5648f-e238-4e98-b2d5-32d41ab94314 storage1 C3L-00413.WGS.T.hg38 C3L-00413 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7cd7dd5b-4c04-4f55-88c5-73a813a1b7a8/ef798c59-f595-45b8-960e-6b36c8169fb9_gdc_realn.bam 84393379739 BAM hg38 7cd7dd5b-4c04-4f55-88c5-73a813a1b7a8 storage1 +C3L-00415.WGS.A.hg38 C3L-00415 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06add90a-ada5-4b00-88a2-c23331fd9f55/46ef162e-6ea4-45a1-adac-24b1615c7c8a_wgs_gdc_realn.bam 83752007066 BAM hg38 06add90a-ada5-4b00-88a2-c23331fd9f55 storage1 +C3L-00415.WGS.N.hg38 C3L-00415 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1415f178-da4e-478d-9909-53e201c259e4/ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 107561633801 BAM hg38 1415f178-da4e-478d-9909-53e201c259e4 storage1 +C3L-00415.WGS.T.hg38 C3L-00415 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51a9bfe4-562f-44a7-b1c5-e5237c92b927/6acbde3c-8e88-4c38-85d5-8868552a6441_gdc_realn.bam 107285908367 BAM hg38 51a9bfe4-562f-44a7-b1c5-e5237c92b927 storage1 C3L-00416.WGS.A.hg38 C3L-00416 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be631715-80a0-4730-9295-b69cfa13ff26/11addf54-be1c-4ab9-9aab-ddcd9708392b_wgs_gdc_realn.bam 77064710424 BAM hg38 be631715-80a0-4730-9295-b69cfa13ff26 storage1 C3L-00416.WGS.N.hg38 C3L-00416 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc2be928-6599-4690-846a-2227c275d164/d0950d5e-e5ef-4f12-8c6f-3b28522b1778_gdc_realn.bam 87578282192 BAM hg38 bc2be928-6599-4690-846a-2227c275d164 storage1 C3L-00416.WGS.T.hg38 C3L-00416 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27f56b06-46e8-45a5-8bb0-f4c91b69893d/b6b85465-cb0b-4539-9e85-639a6fe66086_gdc_realn.bam 99980462249 BAM hg38 27f56b06-46e8-45a5-8bb0-f4c91b69893d storage1 @@ -168,9 +190,16 @@ C3L-00418.WGS.T.hg38 C3L-00418 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-00422.WGS.A.hg38 C3L-00422 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbb6185c-c7a6-48ac-aae4-76f64052eae7/1468d8d0-c4b4-4c00-b057-97b8d19a4bd8_wgs_gdc_realn.bam 90428630751 BAM hg38 dbb6185c-c7a6-48ac-aae4-76f64052eae7 storage1 C3L-00422.WGS.N.hg38 C3L-00422 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/844da3e5-7f5e-49be-843a-62ebc6fce4b5/37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 102785940242 BAM hg38 844da3e5-7f5e-49be-843a-62ebc6fce4b5 storage1 C3L-00422.WGS.T.hg38 C3L-00422 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ddc9c82-e2aa-46ca-b3cd-491c194219bb/d2779a54-6282-4c22-a689-d752fbdc3b21_gdc_realn.bam 100368722134 BAM hg38 8ddc9c82-e2aa-46ca-b3cd-491c194219bb storage1 +C3L-00424.WGS.N.hg38 C3L-00424 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c0a76f1-62b3-4989-b052-d7c1b998d3b5/ab02af11-b8e9-479f-9bf0-1a422709018b_gdc_realn.bam 108115628265 BAM hg38 6c0a76f1-62b3-4989-b052-d7c1b998d3b5 storage1 +C3L-00424.WGS.T.hg38 C3L-00424 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0901ba1-f57c-48c6-9c0b-93c0bcb66e51/ac5da2f4-2c43-4872-a123-a3fc556a98d4_gdc_realn.bam 96583401222 BAM hg38 e0901ba1-f57c-48c6-9c0b-93c0bcb66e51 storage1 +C3L-00429.WGS.N.hg38 C3L-00429 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88056b8b-09dd-4be2-871b-1c23ea05c0cf/c4fd9692-30a3-4f34-a8ae-8f320c4a0050_gdc_realn.bam 108275397437 BAM hg38 88056b8b-09dd-4be2-871b-1c23ea05c0cf storage1 +C3L-00429.WGS.T.hg38 C3L-00429 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9ebdfe6-8bdd-4469-be27-c8999c000e8f/9cc4c755-ca18-481a-b9ef-25ebd4706838_gdc_realn.bam 91616344611 BAM hg38 a9ebdfe6-8bdd-4469-be27-c8999c000e8f storage1 C3L-00444.WGS.A.hg38 C3L-00444 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52849fba-9ad9-4809-b5e3-7ecd13c8fe47/207dfc06-0684-4fb5-b41e-b086e29ed031_wgs_gdc_realn.bam 80353184323 BAM hg38 52849fba-9ad9-4809-b5e3-7ecd13c8fe47 storage1 C3L-00444.WGS.N.hg38 C3L-00444 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/871ed22a-9e21-48ce-a4a1-08eff04a2069/f18e1637-2c6e-4970-a4e5-bcf58991b13d_wgs_gdc_realn.bam 89460173970 BAM hg38 871ed22a-9e21-48ce-a4a1-08eff04a2069 storage1 C3L-00444.WGS.T.hg38 C3L-00444 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7915db03-94ac-4cc3-85f2-b44fe4ed0296/3dbbf0d2-e67d-4401-8199-a2377fac5565_wgs_gdc_realn.bam 103668090021 BAM hg38 7915db03-94ac-4cc3-85f2-b44fe4ed0296 storage1 +C3L-00445.WGS.A.hg38 C3L-00445 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a6a8d58-bc2b-4629-a6d5-a003bb1f77b8/8e464f1c-a960-4810-a984-75d62f2086e8_wgs_gdc_realn.bam 77751126157 BAM hg38 4a6a8d58-bc2b-4629-a6d5-a003bb1f77b8 storage1 +C3L-00445.WGS.N.hg38 C3L-00445 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/446f4c05-4489-4fcb-bdae-f7111851ad05/671050aa-def8-4a5c-9101-f9e53d9e8fe4_wgs_gdc_realn.bam 72801510671 BAM hg38 446f4c05-4489-4fcb-bdae-f7111851ad05 storage1 +C3L-00445.WGS.T.hg38 C3L-00445 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8228dc0-a129-4009-9833-236447a5e66d/0a402562-24c6-4a9f-af18-9c5ac968f866_wgs_gdc_realn.bam 89533514743 BAM hg38 f8228dc0-a129-4009-9833-236447a5e66d storage1 C3L-00446.WGS.A.hg38 C3L-00446 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47fd5108-15bb-4eeb-9810-6a7a9a4ff02b/75048cfb-71f1-4fdf-b78c-aa86369f3619_wgs_gdc_realn.bam 84118607107 BAM hg38 47fd5108-15bb-4eeb-9810-6a7a9a4ff02b storage1 C3L-00446.WGS.N.hg38 C3L-00446 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7560b484-dee8-4f0e-ac15-5f46d77cb5eb/99f55744-433e-48b2-bec7-34b3d3f1b297_wgs_gdc_realn.bam 80588309709 BAM hg38 7560b484-dee8-4f0e-ac15-5f46d77cb5eb storage1 C3L-00446.WGS.T.hg38 C3L-00446 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3dd2e673-ebc0-4df1-b382-8c0c45641738/8817b640-f385-4838-a90d-56e2deed4b68_wgs_gdc_realn.bam 80390375511 BAM hg38 3dd2e673-ebc0-4df1-b382-8c0c45641738 storage1 @@ -184,14 +213,23 @@ C3L-00448.WGS.N.hg38 C3L-00448 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3L-00448.WGS.T.hg38 C3L-00448 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fd869b5-46a2-416e-ad29-81af97074ef7/c3fde858-d1da-49bc-b32c-c10227fa28fb_gdc_realn.bam 95423542957 BAM hg38 5fd869b5-46a2-416e-ad29-81af97074ef7 storage1 C3L-00449.WGS.N.hg38 C3L-00449 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/688ef886-6324-46d5-89ee-11be2c3c3b8b/5a75740b-ad5b-4f29-8b9e-1d011f50aac7_gdc_realn.bam 118804355054 BAM hg38 688ef886-6324-46d5-89ee-11be2c3c3b8b storage1 C3L-00449.WGS.T.hg38 C3L-00449 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79b0a390-f6b2-4eb1-a905-90f69c0104e5/73d8e268-db73-4fa5-b943-4e99a762e81a_gdc_realn.bam 103412720618 BAM hg38 79b0a390-f6b2-4eb1-a905-90f69c0104e5 storage1 +C3L-00503.WGS.N.hg38 C3L-00503 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8b7beaf-0808-4e2b-99ad-4981c2fca5c7/9b1d1a96-4652-4b71-961a-1159746b2e10_gdc_realn.bam 114729660774 BAM hg38 a8b7beaf-0808-4e2b-99ad-4981c2fca5c7 storage1 +C3L-00503.WGS.T.hg38 C3L-00503 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc77e602-348c-4658-870a-f7b48274f3fa/e7d164b4-6504-4434-b466-31771b0cb8b6_gdc_realn.bam 99428718346 BAM hg38 bc77e602-348c-4658-870a-f7b48274f3fa storage1 +C3L-00506.WGS.N.hg38 C3L-00506 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eccb55ab-88b8-404d-bd51-a31496496a73/7caabded-768a-4faf-b164-e646657c0a08_gdc_realn.bam 111357006675 BAM hg38 eccb55ab-88b8-404d-bd51-a31496496a73 storage1 +C3L-00506.WGS.T.hg38 C3L-00506 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b1e84dc-a6a0-435b-b260-b776ea156a72/3d0b68f7-ef37-4da6-8626-0ffcbed10d02_gdc_realn.bam 121224209825 BAM hg38 4b1e84dc-a6a0-435b-b260-b776ea156a72 storage1 C3L-00510.WGS.A.hg38 C3L-00510 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca505e15-fc37-4072-b93a-480d15d6916d/5647908e-8c82-4887-94db-e88fc075275d_wgs_gdc_realn.bam 80931299818 BAM hg38 ca505e15-fc37-4072-b93a-480d15d6916d storage1 C3L-00510.WGS.N.hg38 C3L-00510 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa23d9da-e01e-488e-88e0-b64662d57826/7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 115533506100 BAM hg38 fa23d9da-e01e-488e-88e0-b64662d57826 storage1 C3L-00510.WGS.T.hg38 C3L-00510 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31bcd733-1f6a-4ae3-afc5-9503cde6821c/20dda897-e9c3-4180-bfae-686cff203424_gdc_realn.bam 86288638462 BAM hg38 31bcd733-1f6a-4ae3-afc5-9503cde6821c storage1 +C3L-00528.WGS.N.hg38 C3L-00528 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd82f611-4074-4cef-be9e-78dc06a720fc/19d40ca7-57bd-4396-990b-08df765b0ea5_gdc_realn.bam 107915085965 BAM hg38 cd82f611-4074-4cef-be9e-78dc06a720fc storage1 +C3L-00528.WGS.T.hg38 C3L-00528 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a8acde5-1901-498b-80f5-8270e0f35202/4045ff81-bda7-41d2-9cff-4123d19de044_gdc_realn.bam 116799603774 BAM hg38 5a8acde5-1901-498b-80f5-8270e0f35202 storage1 C3L-00561.WGS.A.hg38 C3L-00561 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19d99b83-9a48-40a8-ae3e-f387ebe4afa6/499db071-21c6-4e62-afb1-ab7b3b3f3d31_wgs_gdc_realn.bam 80272829983 BAM hg38 19d99b83-9a48-40a8-ae3e-f387ebe4afa6 storage1 C3L-00561.WGS.N.hg38 C3L-00561 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e75e68a9-7ea6-43b9-8da1-6a01f05acea8/a54a0716-5554-41b5-8adf-70c76dedf8b7_gdc_realn.bam 93221503329 BAM hg38 e75e68a9-7ea6-43b9-8da1-6a01f05acea8 storage1 C3L-00561.WGS.T.hg38 C3L-00561 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44b4ef6c-47a3-485b-90b0-713dcc1c6e33/56a6a879-3a4e-4e3b-a002-98c8be88c245_gdc_realn.bam 90244243768 BAM hg38 44b4ef6c-47a3-485b-90b0-713dcc1c6e33 storage1 C3L-00563.WGS.N.hg38 C3L-00563 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/611aab51-5e8b-42a5-a07c-0f263c5b99cb/f38738f1-ed43-4824-9c84-b23a66d122b2_gdc_realn.bam 102537189019 BAM hg38 611aab51-5e8b-42a5-a07c-0f263c5b99cb storage1 C3L-00563.WGS.T.hg38 C3L-00563 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8135d8d2-1d84-43d2-ac41-4eec5cebb607/e1743cdd-69f2-4643-810d-4f1c677560ac_gdc_realn.bam 105011002665 BAM hg38 8135d8d2-1d84-43d2-ac41-4eec5cebb607 storage1 +C3L-00568.WGS.A.hg38 C3L-00568 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa870c2e-837e-4013-9eee-19a1c23bb28c/d6197e35-b862-4f90-8986-af1a6450b2f7_wgs_gdc_realn.bam 94810014779 BAM hg38 aa870c2e-837e-4013-9eee-19a1c23bb28c storage1 +C3L-00568.WGS.N.hg38 C3L-00568 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1415e5d-d67b-494a-9bc7-f2b1d7548803/556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 109357855846 BAM hg38 a1415e5d-d67b-494a-9bc7-f2b1d7548803 storage1 +C3L-00568.WGS.T.hg38 C3L-00568 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53d1bac2-cd1f-4a52-919a-088825cfb7af/a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 85102392288 BAM hg38 53d1bac2-cd1f-4a52-919a-088825cfb7af storage1 C3L-00581.WGS.A.hg38 C3L-00581 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96faf309-d99a-4243-ba15-1fe8593487a8/4f72a152-448d-4036-8ddb-a12576e7689c_wgs_gdc_realn.bam 91702661429 BAM hg38 96faf309-d99a-4243-ba15-1fe8593487a8 storage1 C3L-00581.WGS.N.hg38 C3L-00581 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/719061f9-20d5-428b-9615-9a6e3e092026/e9638496-3274-4e1b-b294-c8780236f749_gdc_realn.bam 100037637687 BAM hg38 719061f9-20d5-428b-9615-9a6e3e092026 storage1 C3L-00581.WGS.T.HET_rkQ092.hg38 C3L-00581 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de0bba0c-65ae-49ac-b741-332b4af6ad8d/59865d46-a742-4ac0-88a1-2973bccead8e_wgs_gdc_realn.bam 68986127272 BAM hg38 de0bba0c-65ae-49ac-b741-332b4af6ad8d storage1 @@ -210,6 +248,8 @@ C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor /storage1/fs1/m.wyc C3L-00589.WGS.A.hg38 C3L-00589 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36faf0bc-ac63-4994-b7b8-6788c21e3929/02445bc7-10d8-415e-9f77-d527639fc06c_wgs_gdc_realn.bam 117123440776 BAM hg38 36faf0bc-ac63-4994-b7b8-6788c21e3929 storage1 C3L-00589.WGS.N.hg38 C3L-00589 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0de0ca38-c970-40f3-aaab-4ef901ae99b1/50495b8a-9bca-4f88-af7a-0d1181f82755_gdc_realn.bam 120115071198 BAM hg38 0de0ca38-c970-40f3-aaab-4ef901ae99b1 storage1 C3L-00589.WGS.T.hg38 C3L-00589 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af432ac5-46f8-410c-9c96-033ef6bfe7fb/2fe897e3-129e-4d02-a5b7-a4f3e64192e7_gdc_realn.bam 102089108537 BAM hg38 af432ac5-46f8-410c-9c96-033ef6bfe7fb storage1 +C3L-00591.WGS.N.hg38 C3L-00591 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/48514219-2827-49a3-a3a2-8278595707e2/3632d20f-f2f9-4939-878b-1037c915cea6_gdc_realn.bam 153973639303 BAM hg38 48514219-2827-49a3-a3a2-8278595707e2 storage1 +C3L-00591.WGS.T.hg38 C3L-00591 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac860b57-f9e9-4c46-bf05-a4613c3f1fc2/5736b539-4c8c-4b7e-b846-bdabc53b42c6_gdc_realn.bam 101839321944 BAM hg38 ac860b57-f9e9-4c46-bf05-a4613c3f1fc2 storage1 C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c7716fd-1c10-4de1-a7b1-a764133a52e0/44dc96bd-d59e-4b31-8897-552d8ae9fd91.rna_seq.genomic.gdc_realn.bam 8755804690 BAM hg38 4c7716fd-1c10-4de1-a7b1-a764133a52e0 storage1 C3L-00598.WGS.N.hg38 C3L-00598 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3807504c-554a-47af-b7ee-49701c01149e/033ec902-7b53-4260-ba74-cc11cdd77e17_gdc_realn.bam 106296469741 BAM hg38 3807504c-554a-47af-b7ee-49701c01149e storage1 C3L-00598.WGS.T.DEEP_vQZPEM.hg38 C3L-00598 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b203921-5eb7-4ab0-812a-76fe5353f9ec/e7c86c73-63a8-4e75-b394-56dc2c0179ba_gdc_realn.bam 104996631654 BAM hg38 5b203921-5eb7-4ab0-812a-76fe5353f9ec storage1 @@ -219,6 +259,9 @@ C3L-00599.WGS.T.hg38 C3L-00599 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active C3L-00601.WGS.A.hg38 C3L-00601 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1563405d-7781-4421-a33d-07a7a7b786a5/babcb183-1b5a-4b68-b09f-636e02e71030_wgs_gdc_realn.bam 94440078384 BAM hg38 1563405d-7781-4421-a33d-07a7a7b786a5 storage1 C3L-00601.WGS.N.hg38 C3L-00601 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db638288-3dbf-436b-8444-56185109f1eb/50c4a6f8-9efd-4898-a962-a7d89078b9b5_gdc_realn.bam 99301680248 BAM hg38 db638288-3dbf-436b-8444-56185109f1eb storage1 C3L-00601.WGS.T.hg38 C3L-00601 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50107236-d227-4b6c-bd75-b9e860965ea2/84ccff59-af29-4cbf-8068-185a2e2b4c1f_gdc_realn.bam 87876886198 BAM hg38 50107236-d227-4b6c-bd75-b9e860965ea2 storage1 +C3L-00603.WGS.A.hg38 C3L-00603 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e0a1264-08b2-4675-ae8f-df54b2455b55/123bd489-c6dc-474d-8516-cb98dec889bb_wgs_gdc_realn.bam 80462415116 BAM hg38 9e0a1264-08b2-4675-ae8f-df54b2455b55 storage1 +C3L-00603.WGS.N.hg38 C3L-00603 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e257e919-586e-4b59-a437-cf85f7302a0a/f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 113637734370 BAM hg38 e257e919-586e-4b59-a437-cf85f7302a0a storage1 +C3L-00603.WGS.T.hg38 C3L-00603 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de305e9b-c689-46e7-8199-5a2201a711eb/07d0fbf7-5440-4262-965f-c1cc1a739ea4_gdc_realn.bam 114311172616 BAM hg38 de305e9b-c689-46e7-8199-5a2201a711eb storage1 C3L-00604.WGS.A.hg38 C3L-00604 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf5851fc-243e-4d15-995d-be6fd603bea6/d7158a62-4b6b-4102-8459-56e0755e2751_wgs_gdc_realn.bam 85223667769 BAM hg38 bf5851fc-243e-4d15-995d-be6fd603bea6 storage1 C3L-00604.WGS.N.hg38 C3L-00604 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f20f01b-b4e8-4e8a-9dba-8351c388f10c/c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 94701123417 BAM hg38 5f20f01b-b4e8-4e8a-9dba-8351c388f10c storage1 C3L-00604.WGS.T.hg38 C3L-00604 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a80207e6-c13e-478a-b5d0-62389c04ddb5/1464b756-be16-4e28-a7c9-29d5bc6172e9_gdc_realn.bam 134796692358 BAM hg38 a80207e6-c13e-478a-b5d0-62389c04ddb5 storage1 @@ -242,15 +285,23 @@ C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor /storage1/fs1/m.wyc C3L-00625.WGS.A.hg38 C3L-00625 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cecebe2-588a-41d9-9604-ae02ff2a35ab/c24e555d-bc33-4b9d-a08a-cfd379ed765d_wgs_gdc_realn.bam 94046916326 BAM hg38 5cecebe2-588a-41d9-9604-ae02ff2a35ab storage1 C3L-00625.WGS.N.hg38 C3L-00625 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/acb673c1-1691-4dc0-87df-c45130643e4f/cd0605d3-9330-41c3-904c-3fd3f3724e98_gdc_realn.bam 104347332492 BAM hg38 acb673c1-1691-4dc0-87df-c45130643e4f storage1 C3L-00625.WGS.T.hg38 C3L-00625 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a5c7c77-02ed-4bf2-bf16-f08947fabadd/35cbfe6b-e6d9-4191-8f9f-c1a53233e611_gdc_realn.bam 90292248464 BAM hg38 9a5c7c77-02ed-4bf2-bf16-f08947fabadd storage1 +C3L-00631.WGS.N.hg38 C3L-00631 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c125c1d-248b-4df3-a9f8-83a889bd5d56/ba314412-f2aa-4afc-a303-f484d4d6475b_gdc_realn.bam 134087049398 BAM hg38 7c125c1d-248b-4df3-a9f8-83a889bd5d56 storage1 +C3L-00631.WGS.T.hg38 C3L-00631 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0985e93c-fecd-4821-8010-7f7977332cbc/89bc34cf-1175-4cf3-a93a-3836a78ba599_gdc_realn.bam 100197898657 BAM hg38 0985e93c-fecd-4821-8010-7f7977332cbc storage1 C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dfa23859-8a3e-4f14-8018-d0269863c4e0/832ef78d-7629-46e0-862e-5d2e250ceb5e.rna_seq.genomic.gdc_realn.bam 8484009157 BAM hg38 dfa23859-8a3e-4f14-8018-d0269863c4e0 storage1 C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/510bcf2a-44f5-4821-b885-db740a37594b/4164e0e9-8038-40a0-b5a9-61f9617e9135.rna_seq.genomic.gdc_realn.bam 6469999487 BAM hg38 510bcf2a-44f5-4821-b885-db740a37594b storage1 C3L-00640.WGS.A.hg38 C3L-00640 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3612e91-212b-4111-93c8-ca8c374139c1/e3fcb2e6-a532-445e-98f1-aeb3cf3e457f_wgs_gdc_realn.bam 88123286830 BAM hg38 d3612e91-212b-4111-93c8-ca8c374139c1 storage1 C3L-00640.WGS.N.hg38 C3L-00640 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6c5a3a7-bd00-43a1-91c5-eb44e001f740/7d8b1cc7-e9d2-406f-ad58-80a02eb2ad47_gdc_realn.bam 116404250023 BAM hg38 d6c5a3a7-bd00-43a1-91c5-eb44e001f740 storage1 C3L-00640.WGS.T.hg38 C3L-00640 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef416433-6b55-4966-9547-7c6f5733c31a/2998d128-cf02-44f9-a832-ee94ce2d4d56_gdc_realn.bam 108723052847 BAM hg38 ef416433-6b55-4966-9547-7c6f5733c31a storage1 +C3L-00671.WGS.N.hg38 C3L-00671 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ead64768-7a50-4e91-99ac-cbd78dd958d4/48fc7b46-f9a5-4936-9ac5-d76e81657ec8_gdc_realn.bam 112723889609 BAM hg38 ead64768-7a50-4e91-99ac-cbd78dd958d4 storage1 +C3L-00671.WGS.T.hg38 C3L-00671 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5f076bd-526b-443f-8cd7-06b7e4c622b8/25b38c04-0a7f-482a-a715-80d9551c4fed_gdc_realn.bam 109615517898 BAM hg38 b5f076bd-526b-443f-8cd7-06b7e4c622b8 storage1 C3L-00674.RNA-Seq.chimeric.T.hg38 C3L-00674 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfeacbd2-fb7e-41f0-b45f-cc6fee88ce07/d4187670-64bc-48c5-9be9-3780bc7cd89e.rna_seq.chimeric.gdc_realn.bam 33824476 BAM hg38 bfeacbd2-fb7e-41f0-b45f-cc6fee88ce07 storage1 C3L-00674.RNA-Seq.transcriptome.T.hg38 C3L-00674 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/371d5b1a-75c3-4174-865e-00cdb92de256/d4187670-64bc-48c5-9be9-3780bc7cd89e.rna_seq.transcriptome.gdc_realn.bam 9380961835 BAM hg38 371d5b1a-75c3-4174-865e-00cdb92de256 storage1 +C3L-00674.WGS.N.hg38 C3L-00674 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8eb43b54-434f-4d96-884d-0f1d3a9cdc7b/7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 117728414212 BAM hg38 8eb43b54-434f-4d96-884d-0f1d3a9cdc7b storage1 +C3L-00674.WGS.T.hg38 C3L-00674 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c1b29a0-d802-44cc-8629-74050711a8fa/6d3bba42-a739-401a-b95c-44a01c7780c0_gdc_realn.bam 97182893414 BAM hg38 8c1b29a0-d802-44cc-8629-74050711a8fa storage1 C3L-00677.RNA-Seq.chimeric.T.hg38 C3L-00677 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4085f10-a6ff-4f78-a725-a6244eb07d80/0d1e2fdc-6246-4c05-a4af-967e338acec6.rna_seq.chimeric.gdc_realn.bam 49385665 BAM hg38 b4085f10-a6ff-4f78-a725-a6244eb07d80 storage1 C3L-00677.RNA-Seq.transcriptome.T.hg38 C3L-00677 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e9a5052-903d-46eb-8c39-2ce8b0ff5988/0d1e2fdc-6246-4c05-a4af-967e338acec6.rna_seq.transcriptome.gdc_realn.bam 7859286177 BAM hg38 3e9a5052-903d-46eb-8c39-2ce8b0ff5988 storage1 +C3L-00677.WGS.N.hg38 C3L-00677 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c36b7bb-4d3d-4702-94f1-4618d96cbe82/5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 94179524762 BAM hg38 3c36b7bb-4d3d-4702-94f1-4618d96cbe82 storage1 +C3L-00677.WGS.T.hg38 C3L-00677 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9bbac005-ca4b-48ba-b0c5-2cfa573227e1/1d6c4f0f-09c4-4472-a19e-30ee7e0ecf64_gdc_realn.bam 104577851813 BAM hg38 9bbac005-ca4b-48ba-b0c5-2cfa573227e1 storage1 C3L-00765.WGS.N.hg38 C3L-00765 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2da471be-93f2-4674-82d7-93c868ab4faa/309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 100395994243 BAM hg38 2da471be-93f2-4674-82d7-93c868ab4faa storage1 C3L-00765.WGS.T.hg38 C3L-00765 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2c631e0-2f69-4f59-8b69-b6a7f1332a2d/f5b3f122-436a-45d1-bb80-ee76ceaf7d48_gdc_realn.bam 147999449972 BAM hg38 c2c631e0-2f69-4f59-8b69-b6a7f1332a2d storage1 C3L-00766.WGS.N.hg38 C3L-00766 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1803562e-4a8e-44e0-a4f7-dba1b397b9bd/83ea1247-e8c1-4bfc-a980-ff6559c85880_gdc_realn.bam 98180727025 BAM hg38 1803562e-4a8e-44e0-a4f7-dba1b397b9bd storage1 @@ -312,6 +363,9 @@ C3L-00898.WGS.T.hg38 C3L-00898 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3L-00902.WGS.A.hg38 C3L-00902 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d81d1664-abb5-440f-9cde-ff2ff5a98070/a0f2851f-dfab-44c6-8f10-c08b22b05af9_wgs_gdc_realn.bam 93809506184 BAM hg38 d81d1664-abb5-440f-9cde-ff2ff5a98070 storage1 C3L-00902.WGS.N.hg38 C3L-00902 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be4390e5-10ce-459b-b1a7-acc51c8997e5/cc4b8a38-f97c-4cc2-b2d6-4f5d4b135ec3_gdc_realn.bam 114460676121 BAM hg38 be4390e5-10ce-459b-b1a7-acc51c8997e5 storage1 C3L-00902.WGS.T.hg38 C3L-00902 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7f9f3c60-6d35-48dd-9ed0-576ad6ec0ece/42d54beb-4782-41f3-961e-9e2410b43eb3_gdc_realn.bam 133426690584 BAM hg38 7f9f3c60-6d35-48dd-9ed0-576ad6ec0ece storage1 +C3L-00904.WGS.A.hg38 C3L-00904 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2be35bc-1af5-4fd0-933f-22f152880ca8/32e37138-84ae-40e3-9533-7d9be547c627_wgs_gdc_realn.bam 77587305561 BAM hg38 c2be35bc-1af5-4fd0-933f-22f152880ca8 storage1 +C3L-00904.WGS.N.hg38 C3L-00904 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/321d197d-86f3-4d3a-8434-2b621da14ed4/a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 116634762187 BAM hg38 321d197d-86f3-4d3a-8434-2b621da14ed4 storage1 +C3L-00904.WGS.T.hg38 C3L-00904 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8cfd2c1c-4306-45b7-b393-c542321edf01/c643b5b9-f774-44bb-bb8c-a6ab9d1e0d29_gdc_realn.bam 116181554915 BAM hg38 8cfd2c1c-4306-45b7-b393-c542321edf01 storage1 C3L-00905.WGS.N.hg38 C3L-00905 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8db9ff3a-558c-4fdb-88e7-310c92350b3b/609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 130867023487 BAM hg38 8db9ff3a-558c-4fdb-88e7-310c92350b3b storage1 C3L-00905.WGS.T.hg38 C3L-00905 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/239efdc5-6656-41bd-acd4-c6ba3c99c4d0/d678d221-9dbd-4e9f-8f94-9aaef5f7092f_gdc_realn.bam 120086520020 BAM hg38 239efdc5-6656-41bd-acd4-c6ba3c99c4d0 storage1 C3L-00907.WGS.A.hg38 C3L-00907 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09e37da2-947b-4d6f-a750-189425191c8d/bba5ddc0-4f69-4f42-a1c0-e4b9d9e6d3a8_wgs_gdc_realn.bam 73494321854 BAM hg38 09e37da2-947b-4d6f-a750-189425191c8d storage1 @@ -336,13 +390,24 @@ C3L-00918.WGS.N.hg38 C3L-00918 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-00918.WGS.T.hg38 C3L-00918 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10d59b04-f3be-4df0-a5ad-217de279d020/2d192478-8285-48eb-855b-40b8ce2a42a0_gdc_realn.bam 115292505756 BAM hg38 10d59b04-f3be-4df0-a5ad-217de279d020 storage1 C3L-00921.WGS.N.hg38 C3L-00921 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d726701-04ed-4a0a-bcab-495568a316e5/5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 116281837995 BAM hg38 4d726701-04ed-4a0a-bcab-495568a316e5 storage1 C3L-00921.WGS.T.hg38 C3L-00921 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa13139a-3e2c-49cd-9318-1d7dc55f2f19/b9d8510c-3b0e-49fb-98a3-c7db2cd05da7_gdc_realn.bam 101518905800 BAM hg38 fa13139a-3e2c-49cd-9318-1d7dc55f2f19 storage1 +C3L-00923.WGS.A.hg38 C3L-00923 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52213dc3-dfbc-460a-95be-341b26d47b64/152edad9-88f9-4902-b4b5-259a03f52797_wgs_gdc_realn.bam 94028001435 BAM hg38 52213dc3-dfbc-460a-95be-341b26d47b64 storage1 +C3L-00923.WGS.N.hg38 C3L-00923 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4357651-c5f4-4003-a4e5-a7833f5b82eb/d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 92854181272 BAM hg38 b4357651-c5f4-4003-a4e5-a7833f5b82eb storage1 +C3L-00923.WGS.T.hg38 C3L-00923 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19b0cf04-990a-4dd4-ab3d-2ee864f209db/4fe1aac3-4bf0-4ceb-a371-c129d5fac28d_gdc_realn.bam 105578059870 BAM hg38 19b0cf04-990a-4dd4-ab3d-2ee864f209db storage1 +C3L-00927.WGS.A.hg38 C3L-00927 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83134601-004d-441e-8b34-d4522d8bcdd4/5b5b4d6b-ebe0-4b3b-ad1e-4b99c11dfa76_wgs_gdc_realn.bam 102599646323 BAM hg38 83134601-004d-441e-8b34-d4522d8bcdd4 storage1 +C3L-00927.WGS.N.hg38 C3L-00927 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f20d768-3910-41ba-916c-9dae17838d8a/b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 139557671252 BAM hg38 5f20d768-3910-41ba-916c-9dae17838d8a storage1 +C3L-00927.WGS.T.hg38 C3L-00927 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f270ceaa-bb11-460c-83ac-7085f601fc48/57bdf35e-fa6d-4379-b4bc-1baa1e07fec3_gdc_realn.bam 110977423149 BAM hg38 f270ceaa-bb11-460c-83ac-7085f601fc48 storage1 C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6def6e24-e2a4-4a18-b1ad-c5a0c921f759/392ffa78-ab52-4eeb-964c-d1a2d06d3490.rna_seq.genomic.gdc_realn.bam 6475494604 BAM hg38 6def6e24-e2a4-4a18-b1ad-c5a0c921f759 storage1 C3L-00928.WGS.A.hg38 C3L-00928 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43b1561d-30ba-4d8f-ad12-d06a7ae196ea/3bddfbe5-3fe9-4c16-9d0d-441b180f9f2e_wgs_gdc_realn.bam 93160451048 BAM hg38 43b1561d-30ba-4d8f-ad12-d06a7ae196ea storage1 C3L-00928.WGS.N.hg38 C3L-00928 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2ead13a-53f6-48a4-beae-6eb532cddbff/4d28d79b-7cbb-4ad9-af4c-13e4de70ebeb_gdc_realn.bam 120097649872 BAM hg38 e2ead13a-53f6-48a4-beae-6eb532cddbff storage1 C3L-00928.WGS.T.hg38 C3L-00928 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e793f13c-835b-46f7-8d5c-87f4f7759c53/0b9a91bc-a425-4324-94f9-a5b3bb4078a6_gdc_realn.bam 107491950009 BAM hg38 e793f13c-835b-46f7-8d5c-87f4f7759c53 storage1 +C3L-00930.WGS.N.hg38 C3L-00930 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6eae4de5-f622-4da6-a903-277839115653/5708aec3-d858-4356-8fae-69eb52a5f8ce_gdc_realn.bam 85913008913 BAM hg38 6eae4de5-f622-4da6-a903-277839115653 storage1 +C3L-00930.WGS.T.hg38 C3L-00930 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/163f3412-edbb-4a88-904d-11214b91d6a4/e12a4da4-0cc5-46c9-9227-27c1e3599a72_gdc_realn.bam 89413919233 BAM hg38 163f3412-edbb-4a88-904d-11214b91d6a4 storage1 C3L-00932.WGS.A.hg38 C3L-00932 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c111a067-1178-4466-a0c4-0c3dec761db2/b79e342b-9467-45ba-8e99-d467ddfc6747_wgs_gdc_realn.bam 81594243258 BAM hg38 c111a067-1178-4466-a0c4-0c3dec761db2 storage1 C3L-00932.WGS.N.hg38 C3L-00932 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/81b1a4f5-dcab-4985-bdda-f1dfbca21017/2b46f8aa-89b0-472b-969d-2ddd7b6266a5_gdc_realn.bam 91245920520 BAM hg38 81b1a4f5-dcab-4985-bdda-f1dfbca21017 storage1 C3L-00932.WGS.T.hg38 C3L-00932 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1e1965b-85d8-40d2-a084-afa2886d1da3/6fea7283-a05f-4452-bcfc-4489af212782_gdc_realn.bam 111642907072 BAM hg38 c1e1965b-85d8-40d2-a084-afa2886d1da3 storage1 +C3L-00935.WGS.A.hg38 C3L-00935 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/088efaf5-f1ef-44d1-a675-f7b03464e169/821fdf87-30a0-4dd1-9a9d-3d3bb7efbab0_wgs_gdc_realn.bam 77015541916 BAM hg38 088efaf5-f1ef-44d1-a675-f7b03464e169 storage1 +C3L-00935.WGS.N.hg38 C3L-00935 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d014202b-ec83-45ea-95cb-b82c57a747da/8a85343c-93ed-4ab5-9012-afde6177de3e_gdc_realn.bam 100906567191 BAM hg38 d014202b-ec83-45ea-95cb-b82c57a747da storage1 +C3L-00935.WGS.T.hg38 C3L-00935 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57d2cd52-d763-4ece-bf74-acc7b7e805e7/8dd384fc-54c9-4764-a288-7c0183f33592_gdc_realn.bam 111230571404 BAM hg38 57d2cd52-d763-4ece-bf74-acc7b7e805e7 storage1 C3L-00938.WGS.N.hg38 C3L-00938 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/382e74bf-0a8c-439e-95c7-88d8d22024fc/354aacf4-4f9f-4177-8882-d3f996822ad9_gdc_realn.bam 105008388487 BAM hg38 382e74bf-0a8c-439e-95c7-88d8d22024fc storage1 C3L-00938.WGS.T.hg38 C3L-00938 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4e1ff6a-e89a-4351-969b-1d7c583f21f4/56a3cbdb-5dad-4d22-af0f-f56075c412b9_gdc_realn.bam 88926367833 BAM hg38 e4e1ff6a-e89a-4351-969b-1d7c583f21f4 storage1 C3L-00942.WGS.N.hg38 C3L-00942 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1b5b9a4-609d-4bb6-a61e-c0c9e499f9ef/3bf4671c-36c5-4987-a7f4-7afefe6422cf_gdc_realn.bam 138875632087 BAM hg38 e1b5b9a4-609d-4bb6-a61e-c0c9e499f9ef storage1 @@ -359,6 +424,8 @@ C3L-00961.WGS.N.hg38 C3L-00961 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-00961.WGS.T.hg38 C3L-00961 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c79d829-0805-426f-bde9-d7862506dc75/56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 95919916981 BAM hg38 2c79d829-0805-426f-bde9-d7862506dc75 storage1 C3L-00963.WGS.N.hg38 C3L-00963 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fc95228-bfef-4385-8139-e212a669da09/6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 88258777385 BAM hg38 1fc95228-bfef-4385-8139-e212a669da09 storage1 C3L-00963.WGS.T.hg38 C3L-00963 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5df1af76-66e7-4bf2-af84-e795e172fc9b/8dd015d6-ae3a-40d5-bc79-798ae6e58d69_gdc_realn.bam 106051183348 BAM hg38 5df1af76-66e7-4bf2-af84-e795e172fc9b storage1 +C3L-00965.WGS.N.hg38 C3L-00965 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/178064bc-5caa-486d-a646-d6cb4dcb1eda/fb9fa687-6ff7-445d-8f04-b7831151cb3b_wgs_gdc_realn.bam 93380029224 BAM hg38 178064bc-5caa-486d-a646-d6cb4dcb1eda storage1 +C3L-00965.WGS.T.hg38 C3L-00965 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1cc3450-d82b-43e3-ab48-ea2b88a33932/12efcab8-04a7-4ae6-ac66-34cac3484d19_wgs_gdc_realn.bam 88689987555 BAM hg38 e1cc3450-d82b-43e3-ab48-ea2b88a33932 storage1 C3L-00966.WGS.A.hg38 C3L-00966 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/133a9d5f-bfdc-4fd2-901c-ab3b32aa4758/20b0ba65-fa9c-49ad-850d-d9f3e644a617_wgs_gdc_realn.bam 94012045685 BAM hg38 133a9d5f-bfdc-4fd2-901c-ab3b32aa4758 storage1 C3L-00966.WGS.N.hg38 C3L-00966 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0034826b-bd5e-40a7-9918-cba39f52d6ec/ba2edf2f-c23f-47cb-a8c8-cf0110df4fe0_wgs_gdc_realn.bam 91384310737 BAM hg38 0034826b-bd5e-40a7-9918-cba39f52d6ec storage1 C3L-00966.WGS.T.hg38 C3L-00966 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da5bbbe6-8e0f-43b9-a885-7c78b8fb698e/f26c7002-5320-4a51-9f26-f8b0e703f019_wgs_gdc_realn.bam 81771555164 BAM hg38 da5bbbe6-8e0f-43b9-a885-7c78b8fb698e storage1 @@ -393,6 +460,9 @@ C3L-00987.WGS.T.hg38 C3L-00987 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-00991.WGS.A.hg38 C3L-00991 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf49c113-1eb3-460c-b6a0-2589250bcb81/ec283004-af44-4c9e-a7dd-b612be07284b_wgs_gdc_realn.bam 82372480584 BAM hg38 cf49c113-1eb3-460c-b6a0-2589250bcb81 storage1 C3L-00991.WGS.N.hg38 C3L-00991 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09a1599a-a1ba-4578-8bf9-9cfb1ad63679/8dc92f70-9830-4d9d-8e77-288406b2abee_wgs_gdc_realn.bam 94992767464 BAM hg38 09a1599a-a1ba-4578-8bf9-9cfb1ad63679 storage1 C3L-00991.WGS.T.hg38 C3L-00991 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3cfdb11-a523-4cdb-a060-e18f80a42e0c/bbfd62a1-2f6a-41f0-a8c6-015b6132e2c2_wgs_gdc_realn.bam 93295082003 BAM hg38 f3cfdb11-a523-4cdb-a060-e18f80a42e0c storage1 +C3L-00993.WGS.A.hg38 C3L-00993 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c6178b4-86dc-4293-9fbd-54a318af355a/9d07d0b9-db86-441c-996a-990a6389901b_wgs_gdc_realn.bam 89148307376 BAM hg38 7c6178b4-86dc-4293-9fbd-54a318af355a storage1 +C3L-00993.WGS.N.hg38 C3L-00993 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d7b2df0-5008-4cef-922e-58fa9be16ba8/3a95c365-c7ec-44e1-88cf-1a5a9711d928_wgs_gdc_realn.bam 87027263680 BAM hg38 6d7b2df0-5008-4cef-922e-58fa9be16ba8 storage1 +C3L-00993.WGS.T.hg38 C3L-00993 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/552fe02d-6fc3-4253-a4bf-8f3bbf62e6a0/a6c3d626-63a7-41ce-9c86-7bb0d30a71b6_wgs_gdc_realn.bam 94828036229 BAM hg38 552fe02d-6fc3-4253-a4bf-8f3bbf62e6a0 storage1 C3L-00994.WGS.N.hg38 C3L-00994 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/858d63f6-daf4-4edc-a5fc-e9ff916949f9/822985be-35ff-4ffe-a7d7-0a85c7a5fe75_wgs_gdc_realn.bam 85957923457 BAM hg38 858d63f6-daf4-4edc-a5fc-e9ff916949f9 storage1 C3L-00994.WGS.T.hg38 C3L-00994 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/feeb7f38-d1d8-4c52-a882-407ee0b58088/69b38344-d664-4be3-9f4a-c8d3607e70fe_wgs_gdc_realn.bam 88786072849 BAM hg38 feeb7f38-d1d8-4c52-a882-407ee0b58088 storage1 C3L-00995.WGS.N.hg38 C3L-00995 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da1895a5-e4ba-4b9f-ac70-93112be64086/bc308dfe-70e7-4a18-932d-5364e9fd4277_wgs_gdc_realn.bam 94454936875 BAM hg38 da1895a5-e4ba-4b9f-ac70-93112be64086 storage1 @@ -401,6 +471,9 @@ C3L-00997.WGS.N.hg38 C3L-00997 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkows C3L-00997.WGS.T.hg38 C3L-00997 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6479db6e-982c-42cd-9c0c-f4b7c6bf74ae/1e3b8e97-6196-4930-9588-abbe7c613637_wgs_gdc_realn.bam 84230097730 BAM hg38 6479db6e-982c-42cd-9c0c-f4b7c6bf74ae storage1 C3L-00999.WGS.N.hg38 C3L-00999 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03d51c99-8605-4ad4-8427-0e0c40a00af6/a78e438f-2565-4383-b625-43310079ac32_wgs_gdc_realn.bam 88876590392 BAM hg38 03d51c99-8605-4ad4-8427-0e0c40a00af6 storage1 C3L-00999.WGS.T.hg38 C3L-00999 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1511a82d-85d0-49dc-bd4f-52c99a00de36/ab838072-d27e-4066-9e36-7ff17592c06c_wgs_gdc_realn.bam 84804024704 BAM hg38 1511a82d-85d0-49dc-bd4f-52c99a00de36 storage1 +C3L-01000.WGS.A.hg38 C3L-01000 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ad90838-2ef4-47a6-83d7-16c82d4eeba8/e847cd05-b1e9-4333-bc61-45fbc0c69179_wgs_gdc_realn.bam 84434318781 BAM hg38 0ad90838-2ef4-47a6-83d7-16c82d4eeba8 storage1 +C3L-01000.WGS.N.hg38 C3L-01000 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8856e7c-0843-494a-af8e-39e107a3d76c/11276d27-830d-4769-ad1b-c68676e58625_wgs_gdc_realn.bam 97368795130 BAM hg38 e8856e7c-0843-494a-af8e-39e107a3d76c storage1 +C3L-01000.WGS.T.hg38 C3L-01000 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07bf958a-9383-4a54-8aae-39f24c5ecc8d/85d26179-d508-42a7-96c2-c030e69c8600_wgs_gdc_realn.bam 89628862053 BAM hg38 07bf958a-9383-4a54-8aae-39f24c5ecc8d storage1 C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b094258-d3a0-4c63-a962-7379922fbcd7/1522e63c-029f-4847-a261-6ddb648c79aa.rna_seq.genomic.gdc_realn.bam 8724107568 BAM hg38 2b094258-d3a0-4c63-a962-7379922fbcd7 storage1 C3L-01031.WGS.A.hg38 C3L-01031 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35da4930-c750-40b2-8ed1-755994133099/1387c555-23d6-476a-9447-1cc6a66dd065_wgs_gdc_realn.bam 102484139312 BAM hg38 35da4930-c750-40b2-8ed1-755994133099 storage1 C3L-01031.WGS.N.hg38 C3L-01031 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e025f7e-69fd-4ead-b0ec-3fd303ed6950/f2683a7b-a49a-48af-91ee-c9185ea9ee2b_wgs_gdc_realn.bam 95686085424 BAM hg38 9e025f7e-69fd-4ead-b0ec-3fd303ed6950 storage1 @@ -423,12 +496,20 @@ C3L-01037.WGS.N.hg38 C3L-01037 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-01037.WGS.T.hg38 C3L-01037 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31c3a193-02db-4201-b892-f875dc956fbf/b75965f9-6de3-4257-9f86-ff21ca24c9f1_wgs_gdc_realn.bam 99618467523 BAM hg38 31c3a193-02db-4201-b892-f875dc956fbf storage1 C3L-01040.RNA-Seq.chimeric.T.hg38 C3L-01040 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b97c2c7-11c6-4575-a67f-a3d05caab1ae/ad329b33-b7cc-42fb-8daf-2096b91752fb.rna_seq.chimeric.gdc_realn.bam 30327190 BAM hg38 6b97c2c7-11c6-4575-a67f-a3d05caab1ae storage1 C3L-01040.RNA-Seq.transcriptome.T.hg38 C3L-01040 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fcd4cb4-6a2c-42a4-acc8-cb25d4f674a5/ad329b33-b7cc-42fb-8daf-2096b91752fb.rna_seq.transcriptome.gdc_realn.bam 6990595728 BAM hg38 5fcd4cb4-6a2c-42a4-acc8-cb25d4f674a5 storage1 +C3L-01040.WGS.N.hg38 C3L-01040 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c45f433-c594-4e0f-90e0-e7533a606720/30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wgs_gdc_realn.bam 88428000831 BAM hg38 3c45f433-c594-4e0f-90e0-e7533a606720 storage1 +C3L-01040.WGS.T.hg38 C3L-01040 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ac3b5d9-b876-4575-80ac-d915973981de/82659d5a-a5f5-43bd-86ed-b64dcc4d4503_wgs_gdc_realn.bam 100556072773 BAM hg38 4ac3b5d9-b876-4575-80ac-d915973981de storage1 C3L-01043.RNA-Seq.chimeric.T.hg38 C3L-01043 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3267bb03-c917-46e1-9b86-2beb130e3085/bcba586f-1f62-4816-b76b-ac2ebb5f8094.rna_seq.chimeric.gdc_realn.bam 137880966 BAM hg38 3267bb03-c917-46e1-9b86-2beb130e3085 storage1 C3L-01043.RNA-Seq.transcriptome.T.hg38 C3L-01043 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b6391db-b60c-4d1e-bf5a-c36aaef253a0/bcba586f-1f62-4816-b76b-ac2ebb5f8094.rna_seq.transcriptome.gdc_realn.bam 9295226882 BAM hg38 6b6391db-b60c-4d1e-bf5a-c36aaef253a0 storage1 +C3L-01043.WGS.N.hg38 C3L-01043 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44c2286d-e07c-4871-9f20-b4bcca0adba6/a79dbdd5-f75c-475d-9779-9b789365a607_wgs_gdc_realn.bam 92189444626 BAM hg38 44c2286d-e07c-4871-9f20-b4bcca0adba6 storage1 +C3L-01043.WGS.T.hg38 C3L-01043 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37242c27-ad2c-41eb-b802-26b0a5cdcd19/27e86e11-a91a-4a57-a421-e890ea7eced1_wgs_gdc_realn.bam 86215273880 BAM hg38 37242c27-ad2c-41eb-b802-26b0a5cdcd19 storage1 C3L-01045.RNA-Seq.chimeric.T.hg38 C3L-01045 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c2ea903b-2dcb-4fd3-b0d6-c719db7cf427/c1549287-1d21-4120-9660-bbf562cca5cf.rna_seq.chimeric.gdc_realn.bam 55866239 BAM hg38 c2ea903b-2dcb-4fd3-b0d6-c719db7cf427 storage1 C3L-01045.RNA-Seq.transcriptome.T.hg38 C3L-01045 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc53772-e396-455c-b717-e58955640b79/c1549287-1d21-4120-9660-bbf562cca5cf.rna_seq.transcriptome.gdc_realn.bam 7768704216 BAM hg38 3cc53772-e396-455c-b717-e58955640b79 storage1 +C3L-01045.WGS.N.hg38 C3L-01045 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18051194-5341-4e37-8c41-52ebb75a1c10/ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wgs_gdc_realn.bam 82160164266 BAM hg38 18051194-5341-4e37-8c41-52ebb75a1c10 storage1 +C3L-01045.WGS.T.hg38 C3L-01045 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c2a03ad-4ae2-4b8c-9f29-38232d19a992/b9f6bf00-d9af-4281-a9a8-e3e734cf4497_wgs_gdc_realn.bam 83135673504 BAM hg38 0c2a03ad-4ae2-4b8c-9f29-38232d19a992 storage1 C3L-01046.RNA-Seq.chimeric.T.hg38 C3L-01046 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e0f2d49-a528-4cf7-a61f-8b24dc7261fa/5f6c699d-3dd1-4c1e-b772-71283cf32603.rna_seq.chimeric.gdc_realn.bam 103036845 BAM hg38 5e0f2d49-a528-4cf7-a61f-8b24dc7261fa storage1 C3L-01046.RNA-Seq.transcriptome.T.hg38 C3L-01046 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4264f51-a6eb-44da-bf6e-e6df00115b99/5f6c699d-3dd1-4c1e-b772-71283cf32603.rna_seq.transcriptome.gdc_realn.bam 9683212628 BAM hg38 a4264f51-a6eb-44da-bf6e-e6df00115b99 storage1 +C3L-01046.WGS.N.hg38 C3L-01046 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebb12c39-da23-41fa-a0a0-5acef3da13d2/1cd7030a-e45b-4933-a33a-8b9695c7f05d_wgs_gdc_realn.bam 77049093776 BAM hg38 ebb12c39-da23-41fa-a0a0-5acef3da13d2 storage1 +C3L-01046.WGS.T.hg38 C3L-01046 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2472e1fe-6275-45b8-a0fa-d70d34f740df/dde307c7-34d6-4c40-8adb-ab3d526d3d1d_wgs_gdc_realn.bam 93632121974 BAM hg38 2472e1fe-6275-45b8-a0fa-d70d34f740df storage1 C3L-01048.RNA-Seq.chimeric.T.hg38 C3L-01048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b16b5693-a333-40fa-a8cf-6cf060db39fe/1ba88acd-951a-472f-b5be-b4e8cc4174ce.rna_seq.chimeric.gdc_realn.bam 41061687 BAM hg38 b16b5693-a333-40fa-a8cf-6cf060db39fe storage1 C3L-01048.RNA-Seq.transcriptome.T.hg38 C3L-01048 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/463e36ac-0de7-404f-bb53-50e783ac822b/1ba88acd-951a-472f-b5be-b4e8cc4174ce.rna_seq.transcriptome.gdc_realn.bam 8119972886 BAM hg38 463e36ac-0de7-404f-bb53-50e783ac822b storage1 C3L-01048.WGS.N.hg38 C3L-01048 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db210706-5e05-4ef3-b3e7-9d61b6338696/9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wgs_gdc_realn.bam 91768712836 BAM hg38 db210706-5e05-4ef3-b3e7-9d61b6338696 storage1 @@ -548,6 +629,11 @@ C3L-01282.WGS.N.hg38 C3L-01282 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-01282.WGS.T.hg38 C3L-01282 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58cbc0e7-4448-4ecc-807e-f7386431c790/bdb69ab0-ab7e-42b7-a661-ddf5a6001729_gdc_realn.bam 94461339679 BAM hg38 58cbc0e7-4448-4ecc-807e-f7386431c790 storage1 C3L-01283.WGS.N.hg38 C3L-01283 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/897b6ee0-2fdb-4563-af8e-ff9ffed0170e/e8c358f4-8994-4b68-aa8a-521b69eee0f9_gdc_realn.bam 113942588506 BAM hg38 897b6ee0-2fdb-4563-af8e-ff9ffed0170e storage1 C3L-01283.WGS.T.hg38 C3L-01283 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/26c17bc9-eea5-4ec9-80b1-6a9e04d5221e/378ea411-3d58-4f9a-803d-8b7b89c9a5b3_gdc_realn.bam 110635260938 BAM hg38 26c17bc9-eea5-4ec9-80b1-6a9e04d5221e storage1 +C3L-01284.WGS.N.hg38 C3L-01284 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd10e94b-b778-44a2-a1af-3caf087d274f/3d32ea57-7403-4d6e-ad7a-c86faa54393d_gdc_realn.bam 106717353602 BAM hg38 bd10e94b-b778-44a2-a1af-3caf087d274f storage1 +C3L-01284.WGS.T.hg38 C3L-01284 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9b52bf6-4681-41a9-a3c9-5c13609de510/f36e8c4a-0fc4-4b27-9629-d4838f7ba815_gdc_realn.bam 108540333280 BAM hg38 a9b52bf6-4681-41a9-a3c9-5c13609de510 storage1 +C3L-01285.WGS.A.hg38 C3L-01285 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8cb38e1a-2a6d-43f1-92d4-0f101237408f/68478f98-036d-4812-9b6d-a8a850925cb3_wgs_gdc_realn.bam 87580693686 BAM hg38 8cb38e1a-2a6d-43f1-92d4-0f101237408f storage1 +C3L-01285.WGS.N.hg38 C3L-01285 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f52e8430-6879-4a01-b417-9f9221970f98/e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wgs_gdc_realn.bam 100210891212 BAM hg38 f52e8430-6879-4a01-b417-9f9221970f98 storage1 +C3L-01285.WGS.T.ADNA_roMl92.hg38 C3L-01285 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86676d44-42fe-4224-b835-65d8597dd17f/09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wgs_gdc_realn.bam 83723210431 BAM hg38 86676d44-42fe-4224-b835-65d8597dd17f storage1 C3L-01286.WGS.A.hg38 C3L-01286 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dcd48c0-d3b4-4655-8954-ff719cc20919/76a1e6c8-1257-40b0-b2e0-941a1a66b0da_wgs_gdc_realn.bam 79057723249 BAM hg38 1dcd48c0-d3b4-4655-8954-ff719cc20919 storage1 C3L-01286.WGS.N.hg38 C3L-01286 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf602db8-93c8-4773-b99a-7078fae45412/d82565ca-eaa7-41fe-8a36-6cd4ec201b64_gdc_realn.bam 105941787422 BAM hg38 bf602db8-93c8-4773-b99a-7078fae45412 storage1 C3L-01286.WGS.T.HET_roYL7L.hg38 C3L-01286 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/601ed550-d4e7-41c9-9aac-91462165fac0/020028de-c4ec-4699-a174-79639c6ee6bd_wgs_gdc_realn.bam 85450385411 BAM hg38 601ed550-d4e7-41c9-9aac-91462165fac0 storage1 @@ -579,6 +665,8 @@ C3L-01313.WGS.N.hg38 C3L-01313 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3L-01313.WGS.T.hg38 C3L-01313 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c75357f-8172-4bd1-b5af-3028766f001b/3f1962c7-2a1e-4ac9-b8e0-3e0ab8150728_gdc_realn.bam 114858412722 BAM hg38 3c75357f-8172-4bd1-b5af-3028766f001b storage1 C3L-01327.RNA-Seq.chimeric.T.hg38 C3L-01327 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c17058b-6d36-43c4-a2d3-bb3e1d26e234/c384ac16-e8e5-4fe9-868a-0c09c4d46f07.rna_seq.chimeric.gdc_realn.bam 55108653 BAM hg38 7c17058b-6d36-43c4-a2d3-bb3e1d26e234 storage1 C3L-01327.RNA-Seq.transcriptome.T.hg38 C3L-01327 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84ae0dde-4387-49b1-acdc-735bb4261071/c384ac16-e8e5-4fe9-868a-0c09c4d46f07.rna_seq.transcriptome.gdc_realn.bam 6350855193 BAM hg38 84ae0dde-4387-49b1-acdc-735bb4261071 storage1 +C3L-01327.WGS.N.hg38 C3L-01327 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbe76591-1276-49d4-a0d5-22878b05c8f9/d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 125494357631 BAM hg38 dbe76591-1276-49d4-a0d5-22878b05c8f9 storage1 +C3L-01327.WGS.T.hg38 C3L-01327 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f573ff27-2c76-4d3a-92fa-050676487f52/3b2c4984-e1ca-4748-bb09-e62be4918bae_gdc_realn.bam 98566544991 BAM hg38 f573ff27-2c76-4d3a-92fa-050676487f52 storage1 C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77b18d72-f08c-47ec-a786-d7a2ecb5c1b6/f1274a56-b5b2-4316-999f-5de0211fcf37.rna_seq.genomic.gdc_realn.bam 11353910760 BAM hg38 77b18d72-f08c-47ec-a786-d7a2ecb5c1b6 storage1 C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3da74dc6-380b-4de0-8f9e-221a3cf79a4a/51a03355-1437-48f7-ac14-2c09f83cd89c.rna_seq.genomic.gdc_realn.bam 9451583241 BAM hg38 3da74dc6-380b-4de0-8f9e-221a3cf79a4a storage1 C3L-01328.WGS.A.hg38 C3L-01328 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80c596a7-1280-418b-962e-dc2db04052b8/6a5398e0-434f-4dea-8c9e-75cd3d1069a8_wgs_gdc_realn.bam 88259026630 BAM hg38 80c596a7-1280-418b-962e-dc2db04052b8 storage1 @@ -596,6 +684,9 @@ C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor /storage1/fs1/m.wyc C3L-01453.WGS.A.hg38 C3L-01453 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f57bd77-2dce-4c3f-8eb4-b391d8f07345/b5c2ce79-efc4-4838-a64b-d10699c59075_wgs_gdc_realn.bam 96938177064 BAM hg38 2f57bd77-2dce-4c3f-8eb4-b391d8f07345 storage1 C3L-01453.WGS.N.hg38 C3L-01453 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d/dc6ce414-625c-4290-b5c9-b46f72582478_wgs_gdc_realn.bam 107577882836 BAM hg38 cd2f26c3-8c7f-4ac1-aa94-af6b31ef421d storage1 C3L-01453.WGS.T.DEEP_rxJo3W.hg38 C3L-01453 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18f0a656-615a-417e-92b1-953fbfd4afd6/4494960c-3f83-48f8-8cd8-265f77a5aaa6_wgs_gdc_realn.bam 99095446357 BAM hg38 18f0a656-615a-417e-92b1-953fbfd4afd6 storage1 +C3L-01455.WGS.A.hg38 C3L-01455 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b11a1346-850e-4233-8a96-ed1e6ff0de8d/23e914a3-9538-4816-90ca-95ef0960b86d_wgs_gdc_realn.bam 87546027787 BAM hg38 b11a1346-850e-4233-8a96-ed1e6ff0de8d storage1 +C3L-01455.WGS.N.hg38 C3L-01455 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2166ea32-e285-4f46-babf-70f7c19fea16/cf3222f7-40e1-48fa-af77-ec1ca37435c2_wgs_gdc_realn.bam 78130530534 BAM hg38 2166ea32-e285-4f46-babf-70f7c19fea16 storage1 +C3L-01455.WGS.T.hg38 C3L-01455 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/820aac6d-53f3-4c65-a26b-f7a5217ad15b/d300f0c0-0904-42c8-bddc-973ff46f5994_wgs_gdc_realn.bam 104646376857 BAM hg38 820aac6d-53f3-4c65-a26b-f7a5217ad15b storage1 C3L-01459.WGS.N.hg38 C3L-01459 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c36ff144-2cea-4141-91a3-0d71ee37dcb7/04b86eab-b41c-4b80-bf4f-ca867afe4c02_gdc_realn.bam 111782579047 BAM hg38 c36ff144-2cea-4141-91a3-0d71ee37dcb7 storage1 C3L-01459.WGS.T.hg38 C3L-01459 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/581ac66f-7cf9-43a7-a2c0-cf7b4be5bce7/a9a00193-10b4-48f5-a3d5-8946a4710f20_gdc_realn.bam 100283837250 BAM hg38 581ac66f-7cf9-43a7-a2c0-cf7b4be5bce7 storage1 C3L-01462.WGS.A.hg38 C3L-01462 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a54d990-6fe2-40ca-afc2-5df1c3f8ef65/cf413cfe-d871-4dc4-88b0-42d82a1aaea2_wgs_gdc_realn.bam 100860850101 BAM hg38 0a54d990-6fe2-40ca-afc2-5df1c3f8ef65 storage1 @@ -624,6 +715,11 @@ C3L-01603.WGS.N.hg38 C3L-01603 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3L-01603.WGS.T.HET_roE4nw.hg38 C3L-01603 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/574e9d8a-9f96-4111-84f9-b20009293f10/aaedabcc-7240-4ff3-91ed-4a68ff39c3c9_wgs_gdc_realn.bam 81926898476 BAM hg38 574e9d8a-9f96-4111-84f9-b20009293f10 storage1 C3L-01603.WGS.T.HET_roEl76.hg38 C3L-01603 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ec7bdd1-cad3-4f0c-939c-474457ac5aee/9be1846a-7ec6-4fa3-861e-5505d3402179_wgs_gdc_realn.bam 59066720417 BAM hg38 2ec7bdd1-cad3-4f0c-939c-474457ac5aee storage1 C3L-01603.WGS.T.hg38 C3L-01603 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f347105-b500-4cdd-8a0e-d931f4a6b999/68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 99249775539 BAM hg38 0f347105-b500-4cdd-8a0e-d931f4a6b999 storage1 +C3L-01604.WGS.N.hg38 C3L-01604 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/202bb7e0-8cb6-42b8-879b-2f20b59d5b9b/906fd915-ba9a-4efc-9783-e656e5bf0c3a_gdc_realn.bam 97598478509 BAM hg38 202bb7e0-8cb6-42b8-879b-2f20b59d5b9b storage1 +C3L-01604.WGS.T.hg38 C3L-01604 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5ff7532-f58f-46f5-9a82-357b2a10c37f/7f203466-2a9c-4d39-942b-991a80dd903e_gdc_realn.bam 123058939691 BAM hg38 a5ff7532-f58f-46f5-9a82-357b2a10c37f storage1 +C3L-01606.WGS.A.hg38 C3L-01606 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0d9c5d2-44de-42f7-b2b0-69ac2f7d7b64/1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wgs_gdc_realn.bam 77494669498 BAM hg38 e0d9c5d2-44de-42f7-b2b0-69ac2f7d7b64 storage1 +C3L-01606.WGS.N.hg38 C3L-01606 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44226526-d229-4949-9534-14dc2e600f7d/14f61799-01e6-4bc3-8da4-8d52b448bdaf_wgs_gdc_realn.bam 94768225643 BAM hg38 44226526-d229-4949-9534-14dc2e600f7d storage1 +C3L-01606.WGS.T.hg38 C3L-01606 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1549df6f-6d6c-472b-b597-a5b04336b9d1/ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wgs_gdc_realn.bam 96237422798 BAM hg38 1549df6f-6d6c-472b-b597-a5b04336b9d1 storage1 C3L-01607.WGS.A.hg38 C3L-01607 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c725d63-9de7-4561-b68b-9ad43f8d16a5/db922bd9-8bd7-408d-b971-bdafbf4a08ce_wgs_gdc_realn.bam 99501129833 BAM hg38 4c725d63-9de7-4561-b68b-9ad43f8d16a5 storage1 C3L-01607.WGS.N.hg38 C3L-01607 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7192e800-b3ae-4f0b-9bf1-f5ecd0e6fa51/2986b7c9-3b40-46f8-a85a-4160c153fb79_wgs_gdc_realn.bam 99746668230 BAM hg38 7192e800-b3ae-4f0b-9bf1-f5ecd0e6fa51 storage1 C3L-01607.WGS.T.HET_rlG2xE.hg38 C3L-01607 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb9be0a8-2f2f-42d0-9f2b-da90d9b56abc/9a22a752-6b30-46f1-82b8-65d20b385a02_wgs_gdc_realn.bam 83711726608 BAM hg38 cb9be0a8-2f2f-42d0-9f2b-da90d9b56abc storage1 @@ -647,6 +743,9 @@ C3L-01639.WGS.T.hg38 C3L-01639 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76544f8a-da30-425d-96d9-dc84292c58a1/f6f916cf-5d2d-4908-b294-4ac79b803e7c.rna_seq.genomic.gdc_realn.bam 9830709164 BAM hg38 76544f8a-da30-425d-96d9-dc84292c58a1 storage1 C3L-01662.WGS.N.hg38 C3L-01662 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7414b32-3c62-4400-9382-f438829f3c30/2f5a49e9-c6f0-445e-80b9-b66e560c5255_wgs_gdc_realn.bam 85057139736 BAM hg38 b7414b32-3c62-4400-9382-f438829f3c30 storage1 C3L-01662.WGS.T.hg38 C3L-01662 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9de1387c-9399-40e4-8c83-9f4e6dcde134/d4ac8568-7108-410e-ae03-a8596a8482b8_wgs_gdc_realn.bam 99047758223 BAM hg38 9de1387c-9399-40e4-8c83-9f4e6dcde134 storage1 +C3L-01663.WGS.A.hg38 C3L-01663 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7dfe8b2-35b7-4f03-9cf7-406dee195ed6/d0ea30eb-f465-4c37-86f7-c259ea148c28_wgs_gdc_realn.bam 82854517176 BAM hg38 d7dfe8b2-35b7-4f03-9cf7-406dee195ed6 storage1 +C3L-01663.WGS.N.hg38 C3L-01663 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ef0c346-cfe6-4acb-9e4f-8eafe124472b/c0be2772-0404-43bf-87d1-057321de4a1c_wgs_gdc_realn.bam 96362297417 BAM hg38 2ef0c346-cfe6-4acb-9e4f-8eafe124472b storage1 +C3L-01663.WGS.T.hg38 C3L-01663 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc1694b8-a22e-4f70-89c7-1fe64d2195b0/e712b7fc-5d1d-49f9-b0c7-ec951cf20427_wgs_gdc_realn.bam 97768099192 BAM hg38 fc1694b8-a22e-4f70-89c7-1fe64d2195b0 storage1 C3L-01664.WGS.N.hg38 C3L-01664 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1dcd820-778b-4d02-92ef-68dd5ba837b5/d500ddc5-7e3c-4e3b-89a1-ac32ae7d24a5_gdc_realn.bam 100355349082 BAM hg38 a1dcd820-778b-4d02-92ef-68dd5ba837b5 storage1 C3L-01664.WGS.T.hg38 C3L-01664 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2576642e-2fbe-4c9f-a0b3-57dd90a3219f/4cf4fb4b-35b7-4431-a8e3-dce12eddc6a3_gdc_realn.bam 113222203524 BAM hg38 2576642e-2fbe-4c9f-a0b3-57dd90a3219f storage1 C3L-01665.WGS.A.hg38 C3L-01665 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36f7e42f-807d-4005-afee-172278bb5369/c192eb5a-01f5-4795-a4dc-57cb22564607_wgs_gdc_realn.bam 86257749071 BAM hg38 36f7e42f-807d-4005-afee-172278bb5369 storage1 @@ -697,11 +796,14 @@ C3L-01833.WGS.N.hg38 C3L-01833 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-01833.WGS.T.hg38 C3L-01833 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e6318bc-bb0f-41a9-8595-059ccfda8f71/e1bf75ae-709e-484b-b4d7-2d589861b32c_wgs_gdc_realn.bam 83963530671 BAM hg38 8e6318bc-bb0f-41a9-8595-059ccfda8f71 storage1 C3L-01834.RNA-Seq.chimeric.T.hg38 C3L-01834 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/63e9bfc7-a78d-4ae6-98a5-34d3ad1cef86/0bd61f0c-5023-49e8-978d-758d69e12e07.rna_seq.chimeric.gdc_realn.bam 107300205 BAM hg38 63e9bfc7-a78d-4ae6-98a5-34d3ad1cef86 storage1 C3L-01834.RNA-Seq.transcriptome.T.hg38 C3L-01834 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5afef067-5da7-4570-a70a-9d252b72cb9e/0bd61f0c-5023-49e8-978d-758d69e12e07.rna_seq.transcriptome.gdc_realn.bam 9387694402 BAM hg38 5afef067-5da7-4570-a70a-9d252b72cb9e storage1 +C3L-01834.WGS.N.hg38 C3L-01834 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/758f901a-f6be-4f59-bc5d-50185c78a336/7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wgs_gdc_realn.bam 85614011228 BAM hg38 758f901a-f6be-4f59-bc5d-50185c78a336 storage1 C3L-01836.WGS.A.hg38 C3L-01836 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cddc27b7-2431-4f34-a52a-91a3268a227c/79324909-5b7b-47bf-a656-6578f9b68759_wgs_gdc_realn.bam 83602021242 BAM hg38 cddc27b7-2431-4f34-a52a-91a3268a227c storage1 C3L-01836.WGS.N.hg38 C3L-01836 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79c2dd57-7f81-496a-b6cf-5e864f1690fd/d8619652-f544-49a1-83ca-bf3bdaaea21c_gdc_realn.bam 117651557299 BAM hg38 79c2dd57-7f81-496a-b6cf-5e864f1690fd storage1 C3L-01836.WGS.T.HET_ro9412.hg38 C3L-01836 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c5e98e5-af52-4c77-b36c-f9180c2dfee9/54465230-bd1f-4cc6-a884-b66f9745bb61_wgs_gdc_realn.bam 62480126275 BAM hg38 4c5e98e5-af52-4c77-b36c-f9180c2dfee9 storage1 C3L-01836.WGS.T.HET_ro9Jk4.hg38 C3L-01836 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e843476a-adf0-4879-8aa5-29ecd51f854d/39647b55-0a9b-4c6b-83e3-6810740239ce_wgs_gdc_realn.bam 78187110312 BAM hg38 e843476a-adf0-4879-8aa5-29ecd51f854d storage1 C3L-01836.WGS.T.hg38 C3L-01836 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d462889b-a998-467a-8296-17046b7ab4ea/8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 102442208131 BAM hg38 d462889b-a998-467a-8296-17046b7ab4ea storage1 +C3L-01838.WGS.N.hg38 C3L-01838 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/803648bc-6df2-4e23-a5aa-16f4425989e8/c4403a57-0f50-47aa-8620-5271d576d48b_wgs_gdc_realn.bam 120173391896 BAM hg38 803648bc-6df2-4e23-a5aa-16f4425989e8 storage1 +C3L-01838.WGS.T.hg38 C3L-01838 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/26bf5415-148f-4c56-ab0f-42a7b68c8cde/1860169f-3c25-44c2-b9fd-6349950c3dc8_wgs_gdc_realn.bam 89892819518 BAM hg38 26bf5415-148f-4c56-ab0f-42a7b68c8cde storage1 C3L-01840.WGS.N.hg38 C3L-01840 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/832dd017-471c-48ab-8b81-1d4ee65f4a4b/bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wgs_gdc_realn.bam 87572684580 BAM hg38 832dd017-471c-48ab-8b81-1d4ee65f4a4b storage1 C3L-01840.WGS.T.hg38 C3L-01840 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/810231c7-c588-4775-9973-a2356a1ddfc2/b5e15343-b733-4c14-87d8-161b1e37c3be_wgs_gdc_realn.bam 87308457395 BAM hg38 810231c7-c588-4775-9973-a2356a1ddfc2 storage1 C3L-01861.WGS.A.hg38 C3L-01861 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdd3b337-fe3e-4276-9aa3-2bc249cbca53/12053926-97e3-4dab-ba27-56a85edfa7ff_wgs_gdc_realn.bam 92682235660 BAM hg38 bdd3b337-fe3e-4276-9aa3-2bc249cbca53 storage1 @@ -719,11 +821,16 @@ C3L-01869.WGS.T.hg38 C3L-01869 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-01882.WGS.A.hg38 C3L-01882 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e301db22-a1cd-450c-b1af-9db77a662b7c/b48fb663-54c2-494d-8864-8c4ab1f84f1f_wgs_gdc_realn.bam 102876480695 BAM hg38 e301db22-a1cd-450c-b1af-9db77a662b7c storage1 C3L-01882.WGS.N.hg38 C3L-01882 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8798c0d1-4288-45c5-8b71-b4c9bb22dec2/57cd12ae-3813-4ebc-8afb-7369a9367c0a_wgs_gdc_realn.bam 83253606900 BAM hg38 8798c0d1-4288-45c5-8b71-b4c9bb22dec2 storage1 C3L-01882.WGS.T.hg38 C3L-01882 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6eff53a9-7c67-47a1-acb6-b432d4fdd593/efba470d-46ea-4677-97ff-8db35dd946d0_wgs_gdc_realn.bam 85950651273 BAM hg38 6eff53a9-7c67-47a1-acb6-b432d4fdd593 storage1 +C3L-01884.WGS.A.hg38 C3L-01884 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23c71a11-f980-4b70-8819-dbeb96cc02e7/7ac07dcd-9f3c-4723-84de-6673ff7d4e05_wgs_gdc_realn.bam 92104161515 BAM hg38 23c71a11-f980-4b70-8819-dbeb96cc02e7 storage1 +C3L-01884.WGS.N.hg38 C3L-01884 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f566337-e30d-446d-ab64-36ac1f18d5ec/fb1f04c2-11b4-46b5-9102-75c435c66d06_wgs_gdc_realn.bam 87466633512 BAM hg38 6f566337-e30d-446d-ab64-36ac1f18d5ec storage1 +C3L-01884.WGS.T.hg38 C3L-01884 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e667336b-a6c8-4bbc-864c-7256ba2fdcb4/8df61ace-1d12-451f-b246-d43e6e2a026e_wgs_gdc_realn.bam 87501645409 BAM hg38 e667336b-a6c8-4bbc-864c-7256ba2fdcb4 storage1 C3L-01885.WGS.A.hg38 C3L-01885 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b796069e-101a-4925-97cb-c0cc114e0818/6d5aa340-f9fd-4f7e-9a82-0970e7137e07_wgs_gdc_realn.bam 83269364748 BAM hg38 b796069e-101a-4925-97cb-c0cc114e0818 storage1 C3L-01885.WGS.N.hg38 C3L-01885 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e041ad49-5dd4-4378-b7f3-31dffbfe5f0e/4433997d-8aed-4464-ac3c-2895df2e69b4_wgs_gdc_realn.bam 80335173667 BAM hg38 e041ad49-5dd4-4378-b7f3-31dffbfe5f0e storage1 C3L-01885.WGS.T.hg38 C3L-01885 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95cc0b3f-00c6-4022-8bf0-ac779b158514/26c6c792-50dc-4611-8888-d9baa193ac21_wgs_gdc_realn.bam 98749716402 BAM hg38 95cc0b3f-00c6-4022-8bf0-ac779b158514 storage1 C3L-01887.RNA-Seq.chimeric.T.hg38 C3L-01887 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbfaedaf-d89f-410c-b7d6-5f7821d69804/ecdfe25c-9d03-449b-9c2d-22081e956c18.rna_seq.chimeric.gdc_realn.bam 34865776 BAM hg38 bbfaedaf-d89f-410c-b7d6-5f7821d69804 storage1 C3L-01887.RNA-Seq.transcriptome.T.hg38 C3L-01887 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/328ffde4-e06c-44df-98e9-bdb7c61aef69/ecdfe25c-9d03-449b-9c2d-22081e956c18.rna_seq.transcriptome.gdc_realn.bam 7497227309 BAM hg38 328ffde4-e06c-44df-98e9-bdb7c61aef69 storage1 +C3L-01887.WGS.N.hg38 C3L-01887 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f992d65-6bb5-473e-a664-1a817a7eec2e/030a80ff-6a29-4599-b87a-c0811c028057_wgs_gdc_realn.bam 83145630508 BAM hg38 9f992d65-6bb5-473e-a664-1a817a7eec2e storage1 +C3L-01887.WGS.T.hg38 C3L-01887 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59e0b276-24b6-4bf5-80fc-ff074f3eba57/e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wgs_gdc_realn.bam 116396076820 BAM hg38 59e0b276-24b6-4bf5-80fc-ff074f3eba57 storage1 C3L-01889.WGS.A.hg38 C3L-01889 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad21af02-0870-40bb-b0bb-d3ff3919022f/7e191962-9279-4ced-bad0-d13f9562894c_wgs_gdc_realn.bam 89725055194 BAM hg38 ad21af02-0870-40bb-b0bb-d3ff3919022f storage1 C3L-01889.WGS.N.hg38 C3L-01889 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8620204-9330-4def-9095-858dd79f1a8f/c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wgs_gdc_realn.bam 114785133755 BAM hg38 d8620204-9330-4def-9095-858dd79f1a8f storage1 C3L-01889.WGS.T.hg38 C3L-01889 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df83e48f-7069-4f85-a1ea-f4099cdc90c9/e370556f-98bc-4182-8a75-9ef866159d07_wgs_gdc_realn.bam 92198541467 BAM hg38 df83e48f-7069-4f85-a1ea-f4099cdc90c9 storage1 @@ -763,6 +870,8 @@ C3L-01978.WGS.N.hg38 C3L-01978 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3L-01978.WGS.T.hg38 C3L-01978 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/97ff763d-d813-46ba-bc51-02a874fee3c8/0c1c2a5e-1bcd-477f-8f3d-0a9493fff631_wgs_gdc_realn.bam 71356471541 BAM hg38 97ff763d-d813-46ba-bc51-02a874fee3c8 storage1 C3L-02041.RNA-Seq.chimeric.T.hg38 C3L-02041 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd2339c2-e504-455d-a614-d2e0673aa665/75774427-0141-4f32-a16b-88e39ca26928.rna_seq.chimeric.gdc_realn.bam 48378182 BAM hg38 dd2339c2-e504-455d-a614-d2e0673aa665 storage1 C3L-02041.RNA-Seq.transcriptome.T.hg38 C3L-02041 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7dc808a-ad7c-4ce9-8ade-c972ad4c9fc1/75774427-0141-4f32-a16b-88e39ca26928.rna_seq.transcriptome.gdc_realn.bam 7292240460 BAM hg38 e7dc808a-ad7c-4ce9-8ade-c972ad4c9fc1 storage1 +C3L-02041.WGS.N.hg38 C3L-02041 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e4208c9-c462-4b08-8e72-a5842dae8f86/413408c0-fdd9-4e15-85da-132bfe999cb2_wgs_gdc_realn.bam 82504136941 BAM hg38 5e4208c9-c462-4b08-8e72-a5842dae8f86 storage1 +C3L-02041.WGS.T.hg38 C3L-02041 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5a9cb82-9dba-4166-ac51-13c08ab9bb23/e7dea719-2e7d-4dd9-b165-1a6a80e193ec_wgs_gdc_realn.bam 96364360840 BAM hg38 b5a9cb82-9dba-4166-ac51-13c08ab9bb23 storage1 C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a/5ba4631a-55a0-4e2e-a28c-10c1c30aeabf.rna_seq.genomic.gdc_realn.bam 7203899740 BAM hg38 1fbb2fb3-71fa-4cde-b196-162d0ba1ad1a storage1 C3L-02109.WGS.N.hg38 C3L-02109 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d00e599-0b48-4775-b3aa-746c0bafe349/c38b9acb-52d8-4fd9-8ee7-2e4ac8175fcc_wgs_gdc_realn.bam 83298578297 BAM hg38 9d00e599-0b48-4775-b3aa-746c0bafe349 storage1 C3L-02109.WGS.T.hg38 C3L-02109 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d241dea6-9bc0-4a63-9d58-3390f4287e7b/ce17f9d1-748e-4d5e-a4bc-031ea3ea0291_wgs_gdc_realn.bam 88656281572 BAM hg38 d241dea6-9bc0-4a63-9d58-3390f4287e7b storage1 @@ -789,14 +898,31 @@ C3L-02121.WGS.N.hg38 C3L-02121 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-02121.WGS.T.hg38 C3L-02121 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92637f7f-aec4-421b-a39d-b6cf62f11aee/97676e1b-baf7-4ce8-a31c-85f48297f123_wgs_gdc_realn.bam 76382345939 BAM hg38 92637f7f-aec4-421b-a39d-b6cf62f11aee storage1 C3L-02125.WGS.N.hg38 C3L-02125 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e47245d-af78-4698-a4f6-296f06c099a5/4b853998-7ba1-4649-9783-e09a313508c2_wgs_gdc_realn.bam 117834340024 BAM hg38 9e47245d-af78-4698-a4f6-296f06c099a5 storage1 C3L-02125.WGS.T.hg38 C3L-02125 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12e8ad0c-70f9-4626-96bb-124451c75302/78aac7c2-2610-4aab-9451-3949fd11a120_wgs_gdc_realn.bam 86696677535 BAM hg38 12e8ad0c-70f9-4626-96bb-124451c75302 storage1 +C3L-02127.WGS.A.hg38 C3L-02127 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22c40f7a-50a2-4bbf-817c-292f69b9d0f5/ad26fa70-8b09-48f7-bb6b-df942821f368_wgs_gdc_realn.bam 105012116107 BAM hg38 22c40f7a-50a2-4bbf-817c-292f69b9d0f5 storage1 +C3L-02127.WGS.N.hg38 C3L-02127 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/caa9bd32-438d-4827-9835-351c908f2e9e/5e39c390-85ac-4582-9f12-a6792994fc69_wgs_gdc_realn.bam 81925801403 BAM hg38 caa9bd32-438d-4827-9835-351c908f2e9e storage1 +C3L-02127.WGS.T.hg38 C3L-02127 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95577ed9-ef52-4e17-aaf4-61d940480231/735d360a-8d51-45b9-817e-d97c12e86c0a_wgs_gdc_realn.bam 87027711471 BAM hg38 95577ed9-ef52-4e17-aaf4-61d940480231 storage1 C3L-02129.WGS.N.hg38 C3L-02129 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a1e0a78-70c6-4118-a60c-4ef220ea1e8f/475e3abc-03e4-4447-b6ac-839fc068f5ea_wgs_gdc_realn.bam 87886343876 BAM hg38 5a1e0a78-70c6-4118-a60c-4ef220ea1e8f storage1 C3L-02129.WGS.T.hg38 C3L-02129 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/547fac6d-d3fe-4c63-ba95-8fdb364e5df8/5f10744c-0ae5-4f7e-a3bc-34a201b73375_wgs_gdc_realn.bam 86520391931 BAM hg38 547fac6d-d3fe-4c63-ba95-8fdb364e5df8 storage1 +C3L-02130.WGS.A.hg38 C3L-02130 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da1049ff-fde1-4fe0-bb79-228b165b09d4/5c4867de-abc1-4ab3-8bb5-07733e3b7008_wgs_gdc_realn.bam 79528417690 BAM hg38 da1049ff-fde1-4fe0-bb79-228b165b09d4 storage1 +C3L-02130.WGS.N.hg38 C3L-02130 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8490c690-dac7-4a72-b2bf-1991fbe05c36/c742c34f-6323-463f-97b2-8670c2f4e950_wgs_gdc_realn.bam 79570021758 BAM hg38 8490c690-dac7-4a72-b2bf-1991fbe05c36 storage1 +C3L-02130.WGS.T.hg38 C3L-02130 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d9c3c11-0d28-481a-9392-86755de63ad3/d8ab669a-e58a-4f91-8d3a-0ab143c4a2ad_wgs_gdc_realn.bam 84163312700 BAM hg38 6d9c3c11-0d28-481a-9392-86755de63ad3 storage1 +C3L-02163.WGS.A.hg38 C3L-02163 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18e6fdeb-a177-4af1-8f31-55555d90d95b/9715fe8d-bfc1-49ce-8853-64f8fbd52500_wgs_gdc_realn.bam 89736103072 BAM hg38 18e6fdeb-a177-4af1-8f31-55555d90d95b storage1 +C3L-02163.WGS.N.hg38 C3L-02163 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3e28b59-bc29-4464-8d3d-205a7ead299c/3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wgs_gdc_realn.bam 84456783103 BAM hg38 b3e28b59-bc29-4464-8d3d-205a7ead299c storage1 +C3L-02163.WGS.T.hg38 C3L-02163 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b08c1b94-78fd-455d-84f9-dd84d222979c/c3fcf397-78d9-40cb-a915-24bbc9a5cb59_wgs_gdc_realn.bam 86351879621 BAM hg38 b08c1b94-78fd-455d-84f9-dd84d222979c storage1 +C3L-02164.WGS.A.hg38 C3L-02164 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b40e8eb-68d8-4d0d-9cd2-928fb30b8c60/29e16a89-1177-45a2-884e-363151aee3c8_wgs_gdc_realn.bam 88533764628 BAM hg38 6b40e8eb-68d8-4d0d-9cd2-928fb30b8c60 storage1 +C3L-02164.WGS.N.hg38 C3L-02164 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6d387d3-30cb-496b-a274-50d628d3124d/cb3de721-41d7-4780-a377-47238d576458_wgs_gdc_realn.bam 82549938680 BAM hg38 f6d387d3-30cb-496b-a274-50d628d3124d storage1 +C3L-02164.WGS.T.hg38 C3L-02164 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b632788a-df3c-4270-b919-502faaf732b1/692c864f-e57b-478b-ade7-7e8ef994bac6_wgs_gdc_realn.bam 76362366393 BAM hg38 b632788a-df3c-4270-b919-502faaf732b1 storage1 C3L-02165.WGS.A.hg38 C3L-02165 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8add41f7-6199-4743-b699-2d1ae230455d/ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wgs_gdc_realn.bam 86663973046 BAM hg38 8add41f7-6199-4743-b699-2d1ae230455d storage1 C3L-02165.WGS.N.hg38 C3L-02165 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbea6bd0-b205-4088-a344-62d7656b9bf1/c34832b9-9c05-4ac5-a581-a59d59d2e8bb_wgs_gdc_realn.bam 80361785822 BAM hg38 fbea6bd0-b205-4088-a344-62d7656b9bf1 storage1 C3L-02165.WGS.T.hg38 C3L-02165 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0a4bb47-d668-414e-832f-baaa4a0297e4/de799385-c88e-4f46-a502-b0c4d6b0a6a9_wgs_gdc_realn.bam 76096623254 BAM hg38 b0a4bb47-d668-414e-832f-baaa4a0297e4 storage1 +C3L-02168.WGS.A.hg38 C3L-02168 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66f7cc00-1b8b-43db-88dd-3c349bd45f75/c15d8e6d-02f7-4ae3-9fd8-23cb0665ec92_wgs_gdc_realn.bam 82552509795 BAM hg38 66f7cc00-1b8b-43db-88dd-3c349bd45f75 storage1 +C3L-02168.WGS.N.hg38 C3L-02168 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5266fb4a-b4bf-4025-bb28-82fdd77837e0/0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wgs_gdc_realn.bam 89124593493 BAM hg38 5266fb4a-b4bf-4025-bb28-82fdd77837e0 storage1 +C3L-02168.WGS.T.hg38 C3L-02168 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4e214d0-f287-4325-85b0-d467b42d6045/4a02531c-43ca-4755-b48a-f9732230695f_wgs_gdc_realn.bam 95264569703 BAM hg38 d4e214d0-f287-4325-85b0-d467b42d6045 storage1 C3L-02169.WGS.A.hg38 C3L-02169 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d30c8364-c3e4-4b6a-bb15-fc82540939f3/6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wgs_gdc_realn.bam 77303064830 BAM hg38 d30c8364-c3e4-4b6a-bb15-fc82540939f3 storage1 C3L-02169.WGS.N.hg38 C3L-02169 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/812b96aa-6bd9-4105-b8cc-4101ea562e38/650a2f0e-c2b7-49d8-a61a-d6b420f000e2_wgs_gdc_realn.bam 93854024125 BAM hg38 812b96aa-6bd9-4105-b8cc-4101ea562e38 storage1 C3L-02169.WGS.T.hg38 C3L-02169 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae53d7d1-50f5-4350-9979-332e2e55fccb/12a95ce5-d1e9-4029-8e73-ac1eb765082f_wgs_gdc_realn.bam 74682366099 BAM hg38 ae53d7d1-50f5-4350-9979-332e2e55fccb storage1 +C3L-02170.WGS.N.hg38 C3L-02170 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7b0ff87-766c-4143-978f-f5f108948904/dd54f8e5-09cc-4925-86e5-797f029e52cb_wgs_gdc_realn.bam 86046076265 BAM hg38 e7b0ff87-766c-4143-978f-f5f108948904 storage1 +C3L-02170.WGS.T.hg38 C3L-02170 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da9c9114-f494-4d90-a45c-513173fe8bde/5222af15-8276-44d6-927e-e46b9d44f28d_wgs_gdc_realn.bam 91723359858 BAM hg38 da9c9114-f494-4d90-a45c-513173fe8bde storage1 C3L-02175.WGS.N.hg38 C3L-02175 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0bff2363-4079-4835-9e0b-b698ece29edc/6eadb488-015f-427c-8194-9709dff9facf_wgs_gdc_realn.bam 97648522008 BAM hg38 0bff2363-4079-4835-9e0b-b698ece29edc storage1 C3L-02175.WGS.T.ADNA_rGO344.hg38 C3L-02175 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71aa6238-f9f2-4374-a406-c192e6ed0154/573d770d-55a6-413b-874b-444f2bff1b31_wgs_gdc_realn.bam 83424429662 BAM hg38 71aa6238-f9f2-4374-a406-c192e6ed0154 storage1 C3L-02176.WGS.N.hg38 C3L-02176 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70a3d096-9863-4512-9f0b-667497ec80bf/253aadb4-5232-451d-a462-01613fba4d1e_wgs_gdc_realn.bam 86587170323 BAM hg38 70a3d096-9863-4512-9f0b-667497ec80bf storage1 @@ -834,6 +960,9 @@ C3L-02347.WGS.T.hg38 C3L-02347 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3L-02348.WGS.A.hg38 C3L-02348 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8d9374d-ba50-4ed6-9c9e-ef2e00a1ef0f/c8f77a00-dd00-44bc-8a2e-6c802f975b40_wgs_gdc_realn.bam 75362403405 BAM hg38 f8d9374d-ba50-4ed6-9c9e-ef2e00a1ef0f storage1 C3L-02348.WGS.N.hg38 C3L-02348 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/518cb3c1-9b81-464a-9de0-b7ddbd3a3250/d140c210-45d6-4aa0-9f78-cde6b7a29207_wgs_gdc_realn.bam 79368968869 BAM hg38 518cb3c1-9b81-464a-9de0-b7ddbd3a3250 storage1 C3L-02348.WGS.T.hg38 C3L-02348 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e86c17db-ab76-4cce-9bdc-7ef2d2288345/4a14d77a-990e-4cba-854c-856a434fa63a_wgs_gdc_realn.bam 110215792391 BAM hg38 e86c17db-ab76-4cce-9bdc-7ef2d2288345 storage1 +C3L-02349.WGS.A.hg38 C3L-02349 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cb5230a-e25f-422a-8da0-3246e5020e90/27e94b6f-a024-4066-9511-05989a7c9124_wgs_gdc_realn.bam 81632153164 BAM hg38 6cb5230a-e25f-422a-8da0-3246e5020e90 storage1 +C3L-02349.WGS.N.hg38 C3L-02349 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1261730f-702c-4781-9d77-bd1c59244821/3ba3953b-5543-477c-9bb0-4433cd773a8f_wgs_gdc_realn.bam 87153972921 BAM hg38 1261730f-702c-4781-9d77-bd1c59244821 storage1 +C3L-02349.WGS.T.hg38 C3L-02349 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c0d0935-44e8-46fb-b258-eb45b6ac0447/d26de4cd-762b-4e7e-bb50-e98df6cf7077_wgs_gdc_realn.bam 76436186000 BAM hg38 8c0d0935-44e8-46fb-b258-eb45b6ac0447 storage1 C3L-02350.WGS.A.hg38 C3L-02350 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0202116f-d3a0-432e-88ec-46291fa4338b/e7f74934-b812-43c5-94f5-2c87f74b7f6f_wgs_gdc_realn.bam 77014202932 BAM hg38 0202116f-d3a0-432e-88ec-46291fa4338b storage1 C3L-02350.WGS.N.hg38 C3L-02350 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dacf396-02e5-436c-ab15-6d0909282714/2c8cbf2e-1ac6-46cb-9315-3690d564180f_wgs_gdc_realn.bam 93696489662 BAM hg38 4dacf396-02e5-436c-ab15-6d0909282714 storage1 C3L-02350.WGS.T.hg38 C3L-02350 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e66b912b-c2b5-431d-b928-68db0c4b1a57/c3ec294d-2862-4510-ba10-a7ea7d3ca87b_wgs_gdc_realn.bam 84062134673 BAM hg38 e66b912b-c2b5-431d-b928-68db0c4b1a57 storage1 @@ -847,6 +976,9 @@ C3L-02354.WGS.N.hg38 C3L-02354 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-02354.WGS.T.hg38 C3L-02354 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9dedae7f-92d8-459a-856e-2dbeac7f4ef6/41fa6fa9-57db-459a-b50a-6fb9d6ff8b77_wgs_gdc_realn.bam 97935154380 BAM hg38 9dedae7f-92d8-459a-856e-2dbeac7f4ef6 storage1 C3L-02357.WGS.N.hg38 C3L-02357 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9115dbbe-ef7e-4c69-aa6d-dd8f24ae0ed8/69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wgs_gdc_realn.bam 81027382280 BAM hg38 9115dbbe-ef7e-4c69-aa6d-dd8f24ae0ed8 storage1 C3L-02357.WGS.T.hg38 C3L-02357 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ccb32710-0918-43b0-907c-106e53ff2f0d/f43f1826-ba38-4389-ac95-dd6097317421_wgs_gdc_realn.bam 81947339856 BAM hg38 ccb32710-0918-43b0-907c-106e53ff2f0d storage1 +C3L-02358.WGS.A.hg38 C3L-02358 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/644f9be9-44f3-42b1-8ebb-e5f8f6b43d2f/dd68794f-b41b-46f5-baac-5876e3060f08_wgs_gdc_realn.bam 81486223975 BAM hg38 644f9be9-44f3-42b1-8ebb-e5f8f6b43d2f storage1 +C3L-02358.WGS.N.hg38 C3L-02358 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c108047-55fd-4108-915e-3435a5fab0ce/2df2a777-76f3-43fd-8d48-ac283e79c4eb_wgs_gdc_realn.bam 85424473542 BAM hg38 4c108047-55fd-4108-915e-3435a5fab0ce storage1 +C3L-02358.WGS.T.hg38 C3L-02358 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d651392-d678-43c2-9d62-4f8ebb90d33f/61f5b700-0bb6-424d-aab5-ecf10d369c99_wgs_gdc_realn.bam 83009244570 BAM hg38 6d651392-d678-43c2-9d62-4f8ebb90d33f storage1 C3L-02364.WGS.A.hg38 C3L-02364 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9de6301d-0126-4bc9-93c4-977bbd40b927/a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wgs_gdc_realn.bam 89049644192 BAM hg38 9de6301d-0126-4bc9-93c4-977bbd40b927 storage1 C3L-02364.WGS.N.hg38 C3L-02364 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72808c26-caba-4ebb-b603-dc372d801b98/be8f1237-9410-41ce-b51f-f44bf6373a98_wgs_gdc_realn.bam 73309023961 BAM hg38 72808c26-caba-4ebb-b603-dc372d801b98 storage1 C3L-02364.WGS.T.hg38 C3L-02364 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a06b3fcd-7daf-4b3c-a823-935e4a5b929f/e132f354-c423-4c15-bc4b-20373f2f57b0_wgs_gdc_realn.bam 82234303992 BAM hg38 a06b3fcd-7daf-4b3c-a823-935e4a5b929f storage1 @@ -860,6 +992,7 @@ C3L-02384.WGS.T.hg38 C3L-02384 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3L-02389.WGS.N.hg38 C3L-02389 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cbf88027-f2f7-41f6-954e-dac3b7e73e16/9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wgs_gdc_realn.bam 110533470294 BAM hg38 cbf88027-f2f7-41f6-954e-dac3b7e73e16 storage1 C3L-02389.WGS.T.hg38 C3L-02389 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/348f3eeb-e418-4596-8915-c3423f148022/cb67a9c4-89aa-48a8-8a01-5a7f991bc7a6_wgs_gdc_realn.bam 83403626473 BAM hg38 348f3eeb-e418-4596-8915-c3423f148022 storage1 C3L-02392.WGS.N.hg38 C3L-02392 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82831af9-d6ec-4673-8440-5cf41005227a/ebccbb2e-028d-40f4-8880-6dd3967edde8_wgs_gdc_realn.bam 107766832826 BAM hg38 82831af9-d6ec-4673-8440-5cf41005227a storage1 +C3L-02392.WGS.T.hg38 C3L-02392 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d07581d-a14e-44f3-98b7-af5d6eccd861/c964c60c-be35-45c6-b7a7-12b7fb3622f5_wgs_gdc_realn.bam 117962729732 BAM hg38 6d07581d-a14e-44f3-98b7-af5d6eccd861 storage1 C3L-02395.WGS.N.hg38 C3L-02395 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69c6d886-813e-4eab-8c49-96c206af8d9e/853593c3-09dc-4248-8661-55e1babe4789_wgs_gdc_realn.bam 82034365435 BAM hg38 69c6d886-813e-4eab-8c49-96c206af8d9e storage1 C3L-02395.WGS.T.hg38 C3L-02395 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62ab4487-f909-4cf1-816f-f33a97e129e1/c7f2be82-a75d-4f94-8476-5c2616ca8f44_wgs_gdc_realn.bam 78955859180 BAM hg38 62ab4487-f909-4cf1-816f-f33a97e129e1 storage1 C3L-02399.WGS.N.hg38 C3L-02399 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c028d7e5-2439-456c-a58f-d69fc4d89fb2/54efbba4-a6e0-4483-8b65-e5e89c443579_wgs_gdc_realn.bam 111890821546 BAM hg38 c028d7e5-2439-456c-a58f-d69fc4d89fb2 storage1 @@ -885,11 +1018,15 @@ C3L-02463.WGS.N.hg38 C3L-02463 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-02463.WGS.T.hg38 C3L-02463 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3455e2ae-0417-41f0-b283-f043d7f84d10/c34fad46-4da8-4e0a-8b47-44c57040312b_wgs_gdc_realn.bam 95148435219 BAM hg38 3455e2ae-0417-41f0-b283-f043d7f84d10 storage1 C3L-02465.RNA-Seq.chimeric.T.hg38 C3L-02465 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c7828b7-4b91-4bcf-803b-17e65891716b/7df4a1c0-38a7-4a70-b6b7-000f7cc05e3f.rna_seq.chimeric.gdc_realn.bam 38641486 BAM hg38 3c7828b7-4b91-4bcf-803b-17e65891716b storage1 C3L-02465.RNA-Seq.transcriptome.T.hg38 C3L-02465 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7ffa91f-bb41-4b2e-a7ac-9e5bfb8c2625/7df4a1c0-38a7-4a70-b6b7-000f7cc05e3f.rna_seq.transcriptome.gdc_realn.bam 10765192717 BAM hg38 d7ffa91f-bb41-4b2e-a7ac-9e5bfb8c2625 storage1 +C3L-02465.WGS.N.hg38 C3L-02465 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28431047-9ed6-4c05-85be-cca99883ae97/f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wgs_gdc_realn.bam 100401110014 BAM hg38 28431047-9ed6-4c05-85be-cca99883ae97 storage1 +C3L-02465.WGS.T.hg38 C3L-02465 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e919b6c7-d76f-44c1-a86f-7c732fce8858/953ddd78-016b-47f4-8708-054f23481a45_wgs_gdc_realn.bam 80756863359 BAM hg38 e919b6c7-d76f-44c1-a86f-7c732fce8858 storage1 C3L-02468.WGS.A.hg38 C3L-02468 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e633e2a1-334f-4b7d-a19f-fcd155b6cdbd/52c4f856-6e69-4ad8-b8c1-edae35bdf6a2_wgs_gdc_realn.bam 95958803137 BAM hg38 e633e2a1-334f-4b7d-a19f-fcd155b6cdbd storage1 C3L-02468.WGS.N.hg38 C3L-02468 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70ce63ec-5515-491d-90d5-83c6f9a13010/6dcbce3e-ba98-4bdd-b436-03c9a2e37ea4_wgs_gdc_realn.bam 87940528141 BAM hg38 70ce63ec-5515-491d-90d5-83c6f9a13010 storage1 C3L-02468.WGS.T.hg38 C3L-02468 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2dfed7a8-8b92-4382-915e-b94860938a25/c7b1a2b5-e019-4e2e-a4f5-f0431a4a4260_wgs_gdc_realn.bam 84130853056 BAM hg38 2dfed7a8-8b92-4382-915e-b94860938a25 storage1 C3L-02504.RNA-Seq.chimeric.T.hg38 C3L-02504 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b4a42d8-e93c-4c86-bf30-0261eed21d17/71f3dcab-b871-4e7f-b68a-43d27e5840e1.rna_seq.chimeric.gdc_realn.bam 37065317 BAM hg38 3b4a42d8-e93c-4c86-bf30-0261eed21d17 storage1 C3L-02504.RNA-Seq.transcriptome.T.hg38 C3L-02504 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ca5d39b-0d60-4104-8cc5-c09317387036/71f3dcab-b871-4e7f-b68a-43d27e5840e1.rna_seq.transcriptome.gdc_realn.bam 8478849181 BAM hg38 2ca5d39b-0d60-4104-8cc5-c09317387036 storage1 +C3L-02504.WGS.N.hg38 C3L-02504 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4ff5445-c045-4bd0-80da-bbfb01175a2b/40f6448c-51b7-499e-8c86-300966f87b99_wgs_gdc_realn.bam 91176818503 BAM hg38 d4ff5445-c045-4bd0-80da-bbfb01175a2b storage1 +C3L-02504.WGS.T.hg38 C3L-02504 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffa548b6-0285-432c-bb41-fd5d5df3b546/df794db3-ed91-4798-a664-49ff826f1131_wgs_gdc_realn.bam 90359529343 BAM hg38 ffa548b6-0285-432c-bb41-fd5d5df3b546 storage1 C3L-02508.WGS.A.hg38 C3L-02508 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4cfae1b-9690-471e-8ebc-fa2419c2691c/0b76afcf-e5dc-45d5-9d4f-45eb93e83b71_wgs_gdc_realn.bam 87951380013 BAM hg38 e4cfae1b-9690-471e-8ebc-fa2419c2691c storage1 C3L-02508.WGS.N.hg38 C3L-02508 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2509fb9f-8364-40ac-a019-9ad013618340/e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wgs_gdc_realn.bam 89294281274 BAM hg38 2509fb9f-8364-40ac-a019-9ad013618340 storage1 C3L-02508.WGS.T.hg38 C3L-02508 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fab451a-8376-46f4-bcfc-ee673c3a5353/0196af9e-08f9-41a7-9f95-38ccf723f916_wgs_gdc_realn.bam 83452937597 BAM hg38 8fab451a-8376-46f4-bcfc-ee673c3a5353 storage1 @@ -899,17 +1036,25 @@ C3L-02515.WGS.N.hg38 C3L-02515 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-02515.WGS.T.hg38 C3L-02515 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/89cc1441-cfcb-406c-99dd-9190b189b76b/0d79013b-c3d2-48fc-ad8a-9eb8427260bf_wgs_gdc_realn.bam 102541987186 BAM hg38 89cc1441-cfcb-406c-99dd-9190b189b76b storage1 C3L-02542.RNA-Seq.chimeric.T.hg38 C3L-02542 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdc601d5-bda5-45d9-9c1b-d580802eb5bd/5d9c5c93-6e90-4703-a956-0c1127804984.rna_seq.chimeric.gdc_realn.bam 33615029 BAM hg38 bdc601d5-bda5-45d9-9c1b-d580802eb5bd storage1 C3L-02542.RNA-Seq.transcriptome.T.hg38 C3L-02542 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66c6070f-00bf-4a63-a92f-41f196252618/5d9c5c93-6e90-4703-a956-0c1127804984.rna_seq.transcriptome.gdc_realn.bam 8386509096 BAM hg38 66c6070f-00bf-4a63-a92f-41f196252618 storage1 +C3L-02542.WGS.N.hg38 C3L-02542 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5daa535-65cf-4f16-9101-9694dbe04250/daa74a11-fa31-4edd-9735-67188296ef8a_wgs_gdc_realn.bam 77449398479 BAM hg38 b5daa535-65cf-4f16-9101-9694dbe04250 storage1 +C3L-02542.WGS.T.hg38 C3L-02542 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25c37631-c529-48a3-936d-cc1d4e9d507e/ebd8c827-69e4-4261-a40b-05acc7a4ae5f_wgs_gdc_realn.bam 96691082498 BAM hg38 25c37631-c529-48a3-936d-cc1d4e9d507e storage1 C3L-02544.WGS.A.hg38 C3L-02544 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6cace19-1b12-4003-8156-5ea5413327dd/835b94a2-fb69-44b9-b331-3485c383fd0d_wgs_gdc_realn.bam 82717616680 BAM hg38 f6cace19-1b12-4003-8156-5ea5413327dd storage1 C3L-02544.WGS.N.hg38 C3L-02544 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47d5da90-42fe-416f-8d5a-ece103e761f0/1430bf9c-586e-4959-a4d9-f5046d72e341_wgs_gdc_realn.bam 83173406666 BAM hg38 47d5da90-42fe-416f-8d5a-ece103e761f0 storage1 C3L-02544.WGS.T.hg38 C3L-02544 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/47a7c1ae-80fb-45fe-a36b-51916e2c7d67/2117b6c5-8d1c-4d2d-82d9-84ebc43d3642_wgs_gdc_realn.bam 82329901819 BAM hg38 47a7c1ae-80fb-45fe-a36b-51916e2c7d67 storage1 C3L-02545.WGS.N.hg38 C3L-02545 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e655dbd5-c57d-42f2-9c25-24194b3f118a/c318b321-0a84-424a-897e-68cbd9f5b838_wgs_gdc_realn.bam 87587039901 BAM hg38 e655dbd5-c57d-42f2-9c25-24194b3f118a storage1 C3L-02545.WGS.T.hg38 C3L-02545 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1df9248-1f34-4b5e-9eba-151721970fd3/7cb30cf9-6a37-4102-b3aa-ebc9666f8900_wgs_gdc_realn.bam 92449481381 BAM hg38 d1df9248-1f34-4b5e-9eba-151721970fd3 storage1 +C3L-02546.WGS.A.hg38 C3L-02546 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d611f811-594f-47a1-93d8-8dcec08f3630/549d8dfc-90ff-4c2c-9306-c4b24ee1c81d_wgs_gdc_realn.bam 77462064099 BAM hg38 d611f811-594f-47a1-93d8-8dcec08f3630 storage1 +C3L-02546.WGS.N.hg38 C3L-02546 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ed949aa-4ed0-41f6-8bee-ad3a4ba74d83/800c8094-c41a-48ff-8af9-955d58e3db66_wgs_gdc_realn.bam 89632146514 BAM hg38 2ed949aa-4ed0-41f6-8bee-ad3a4ba74d83 storage1 +C3L-02546.WGS.T.hg38 C3L-02546 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9095ed6f-aeb6-402b-82d1-a9c79f9a4ee7/4df9fe66-df3a-4c95-9e8a-99ff3c3ef043_wgs_gdc_realn.bam 77041069256 BAM hg38 9095ed6f-aeb6-402b-82d1-a9c79f9a4ee7 storage1 C3L-02549.WGS.A.hg38 C3L-02549 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2fb6f3a-ddea-4285-8092-6355faa35b3d/d7dd9bcd-738a-4c20-8a7f-26ab1b436806_wgs_gdc_realn.bam 82295251947 BAM hg38 e2fb6f3a-ddea-4285-8092-6355faa35b3d storage1 C3L-02549.WGS.N.hg38 C3L-02549 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56355cf3-e713-4f84-8341-34a831669dce/3993fcff-1eb7-4269-b65d-17692a77b538_wgs_gdc_realn.bam 88723889621 BAM hg38 56355cf3-e713-4f84-8341-34a831669dce storage1 C3L-02549.WGS.T.hg38 C3L-02549 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7b01188-7297-430d-bf6e-03af64176550/277a56c0-5e19-4292-951f-6b10ac741447_wgs_gdc_realn.bam 96152277766 BAM hg38 c7b01188-7297-430d-bf6e-03af64176550 storage1 C3L-02551.WGS.A.hg38 C3L-02551 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bfcb0ad-55a4-4b46-bc88-4970e01c162a/3e963853-6bb2-4a64-b030-c8072ed444c0_wgs_gdc_realn.bam 113037172321 BAM hg38 3bfcb0ad-55a4-4b46-bc88-4970e01c162a storage1 C3L-02551.WGS.N.hg38 C3L-02551 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3d40404-9760-45c8-9fda-0efe44bd0513/1fb328fe-22e7-498e-b000-3dc3d9c718fa_wgs_gdc_realn.bam 82896023601 BAM hg38 c3d40404-9760-45c8-9fda-0efe44bd0513 storage1 C3L-02551.WGS.T.hg38 C3L-02551 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eef8dd9f-3421-4a87-8334-f293485bbadd/525cb672-9543-414c-9d01-9bb1f81ae753_wgs_gdc_realn.bam 77848821261 BAM hg38 eef8dd9f-3421-4a87-8334-f293485bbadd storage1 +C3L-02552.WGS.A.hg38 C3L-02552 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1351618d-c62e-4990-b9b4-8842d49e2c82/b5bc65fe-e820-49e0-b4d6-0f42c7a12b5e_wgs_gdc_realn.bam 78566617374 BAM hg38 1351618d-c62e-4990-b9b4-8842d49e2c82 storage1 +C3L-02552.WGS.N.hg38 C3L-02552 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16c519d7-2727-4650-a5ca-09a534507d21/ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wgs_gdc_realn.bam 82568662923 BAM hg38 16c519d7-2727-4650-a5ca-09a534507d21 storage1 +C3L-02552.WGS.T.hg38 C3L-02552 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d84f80-c543-4ade-9ccf-ebc449d13fa1/6890c26c-2da6-4867-aece-58b9af97bd4d_wgs_gdc_realn.bam 84727852338 BAM hg38 02d84f80-c543-4ade-9ccf-ebc449d13fa1 storage1 C3L-02553.WGS.N.hg38 C3L-02553 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87a421dd-8e22-4e24-8577-36ffc94a34d6/46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wgs_gdc_realn.bam 104396358325 BAM hg38 87a421dd-8e22-4e24-8577-36ffc94a34d6 storage1 C3L-02553.WGS.T.hg38 C3L-02553 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad647c91-1696-4512-849e-ceb2dcc939e5/23a9ef2a-8d08-481b-b9a9-5ec6080dc5a0_wgs_gdc_realn.bam 100174688675 BAM hg38 ad647c91-1696-4512-849e-ceb2dcc939e5 storage1 C3L-02555.WGS.N.hg38 C3L-02555 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a4876c8-413d-400b-b6f2-0d68e3a90181/e14b2ac5-d3ba-432b-b415-9943d761bd25_wgs_gdc_realn.bam 84653929323 BAM hg38 5a4876c8-413d-400b-b6f2-0d68e3a90181 storage1 @@ -955,8 +1100,23 @@ C3L-02616.WGS.N.hg38 C3L-02616 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-02616.WGS.T.hg38 C3L-02616 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8105969b-3a9c-4779-ac5f-ef9d22860c99/5168a152-2084-4c61-ab12-1602325fe82e_wgs_gdc_realn.bam 102564563633 BAM hg38 8105969b-3a9c-4779-ac5f-ef9d22860c99 storage1 C3L-02617.WGS.N.hg38 C3L-02617 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/417dfe70-1bfe-4de0-930c-61ffe8b20253/f13bac4a-9644-49b5-b293-9a1c7bbc403f_wgs_gdc_realn.bam 75722880431 BAM hg38 417dfe70-1bfe-4de0-930c-61ffe8b20253 storage1 C3L-02617.WGS.T.RDNA_o2mjl6L.hg38 C3L-02617 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90464380-6f65-439f-9566-28df2137ae7a/be017248-e1fd-45fd-b185-d0e102ada4e8_wgs_gdc_realn.bam 110729474179 BAM hg38 90464380-6f65-439f-9566-28df2137ae7a storage1 +C3L-02619.WGS.A.hg38 C3L-02619 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f9b5e4a-831c-4b01-8ed7-af9df0f60657/86a146cb-c16b-4d97-8b77-e5e9dfb1ed6d_wgs_gdc_realn.bam 93167766642 BAM hg38 2f9b5e4a-831c-4b01-8ed7-af9df0f60657 storage1 +C3L-02619.WGS.N.hg38 C3L-02619 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/52912028-5b24-424a-9690-188bd3bf7b1b/b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wgs_gdc_realn.bam 77954383541 BAM hg38 52912028-5b24-424a-9690-188bd3bf7b1b storage1 +C3L-02619.WGS.T.hg38 C3L-02619 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0698f59a-d0cf-4362-9398-f40c9403ef1a/f693b499-5f81-4c9a-a653-c2f989293a5f_wgs_gdc_realn.bam 92205286209 BAM hg38 0698f59a-d0cf-4362-9398-f40c9403ef1a storage1 C3L-02621.WGS.N.hg38 C3L-02621 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20eae819-83fd-4ade-9bb9-ae11912f675b/02f60b7f-627c-467f-82d6-b766f213c238_wgs_gdc_realn.bam 85697597279 BAM hg38 20eae819-83fd-4ade-9bb9-ae11912f675b storage1 C3L-02621.WGS.T.hg38 C3L-02621 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5e5f962-cd15-424f-bed2-496c59837503/4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wgs_gdc_realn.bam 112311513475 BAM hg38 f5e5f962-cd15-424f-bed2-496c59837503 storage1 +C3L-02624.WGS.A.hg38 C3L-02624 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/23f67a4c-6297-4d64-8e55-0646b33d7a2c/2f3c18a4-fdda-4b95-95e3-cca183fc73e1_wgs_gdc_realn.bam 85786854562 BAM hg38 23f67a4c-6297-4d64-8e55-0646b33d7a2c storage1 +C3L-02624.WGS.N.hg38 C3L-02624 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69daca40-9f0f-43bd-bfef-9d49b9ec7055/1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wgs_gdc_realn.bam 93093483277 BAM hg38 69daca40-9f0f-43bd-bfef-9d49b9ec7055 storage1 +C3L-02624.WGS.T.hg38 C3L-02624 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04034030-8eac-44c6-b0e1-f9e477c978c5/7a444a8f-b557-47ba-bfdb-241bfb165c82_wgs_gdc_realn.bam 93973548993 BAM hg38 04034030-8eac-44c6-b0e1-f9e477c978c5 storage1 +C3L-02625.WGS.A.hg38 C3L-02625 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0179fa2-781e-404e-bc4e-a18ef1a56c5c/3d635e4b-4492-423c-9c73-64d6049459b1_wgs_gdc_realn.bam 94772144631 BAM hg38 a0179fa2-781e-404e-bc4e-a18ef1a56c5c storage1 +C3L-02625.WGS.N.hg38 C3L-02625 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/020dc66a-179f-4169-a126-39220d939638/0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wgs_gdc_realn.bam 78884685977 BAM hg38 020dc66a-179f-4169-a126-39220d939638 storage1 +C3L-02625.WGS.T.hg38 C3L-02625 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f0e16a9-631d-4c09-9bc3-34ec395d7ce3/55194cd1-6ee4-4c6c-ab7e-ff73a429a1a9_wgs_gdc_realn.bam 97566477168 BAM hg38 1f0e16a9-631d-4c09-9bc3-34ec395d7ce3 storage1 +C3L-02627.WGS.A.hg38 C3L-02627 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb075bbc-e4d4-4332-9475-26592fc857db/d7371f00-8697-4a03-ba6f-8a87c790aaea_wgs_gdc_realn.bam 82406035207 BAM hg38 bb075bbc-e4d4-4332-9475-26592fc857db storage1 +C3L-02627.WGS.N.hg38 C3L-02627 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef6b3cab-f35e-4315-8762-b289ca547298/5ef6c53e-92c4-4938-add5-99d12373b127_wgs_gdc_realn.bam 77925801567 BAM hg38 ef6b3cab-f35e-4315-8762-b289ca547298 storage1 +C3L-02627.WGS.T.hg38 C3L-02627 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/70088342-ad1b-4309-9861-5c4c965319aa/99cc8223-ac71-4ad0-bbe4-f1e683686c6d_wgs_gdc_realn.bam 83456753519 BAM hg38 70088342-ad1b-4309-9861-5c4c965319aa storage1 +C3L-02629.WGS.A.hg38 C3L-02629 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bc1bedc-2686-49c2-b393-10e60d4c896c/0fe4767b-76e5-4b00-ac44-8396e660e293_wgs_gdc_realn.bam 86449032257 BAM hg38 4bc1bedc-2686-49c2-b393-10e60d4c896c storage1 +C3L-02629.WGS.N.hg38 C3L-02629 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac7e6d30-242f-4c4a-9482-1c53fdd54e57/bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wgs_gdc_realn.bam 87870129416 BAM hg38 ac7e6d30-242f-4c4a-9482-1c53fdd54e57 storage1 +C3L-02629.WGS.T.hg38 C3L-02629 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38b75c50-e5ad-43a5-83d8-642eb3c2db80/03fcf9b5-9cc3-4f38-b28b-f6fd65bab61e_wgs_gdc_realn.bam 92464028310 BAM hg38 38b75c50-e5ad-43a5-83d8-642eb3c2db80 storage1 C3L-02642.RNA-Seq.chimeric.T.hg38 C3L-02642 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b53ef791-3765-41eb-8fcc-4584211f9218/71d3f3ec-6a82-4497-895c-86cd6b27ea44.rna_seq.chimeric.gdc_realn.bam 44637224 BAM hg38 b53ef791-3765-41eb-8fcc-4584211f9218 storage1 C3L-02642.RNA-Seq.transcriptome.T.hg38 C3L-02642 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cac8b5c-46b0-481e-b39d-0fbdaa0ff99b/71d3f3ec-6a82-4497-895c-86cd6b27ea44.rna_seq.transcriptome.gdc_realn.bam 7928274711 BAM hg38 5cac8b5c-46b0-481e-b39d-0fbdaa0ff99b storage1 C3L-02642.WGS.N.hg38 C3L-02642 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a033ca3-1a89-4818-9753-e11146c7efa7/e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wgs_gdc_realn.bam 99147007103 BAM hg38 6a033ca3-1a89-4818-9753-e11146c7efa7 storage1 @@ -967,10 +1127,24 @@ C3L-02644.RNA-Seq.R1.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-02644.RNA-Seq.R2.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10aec24b-bc0f-4ee3-9179-a94b8da520f4/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ NA 10aec24b-bc0f-4ee3-9179-a94b8da520f4 storage1 C3L-02644.WGS.N.hg38 C3L-02644 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45a5b3d6-b371-4bf2-8477-3e06f8b6cb56/6cdbd613-0752-40a2-9347-582356daf34f_wgs_gdc_realn.bam 76860325745 BAM hg38 45a5b3d6-b371-4bf2-8477-3e06f8b6cb56 storage1 C3L-02644.WGS.T.hg38 C3L-02644 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fac8453c-2278-4a7a-8cca-571fb949d33e/46bef5ac-320b-47da-8f0b-ba57db403534_wgs_gdc_realn.bam 83884571975 BAM hg38 fac8453c-2278-4a7a-8cca-571fb949d33e storage1 +C3L-02646.WGS.N.hg38 C3L-02646 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab08e047-4767-496d-8028-4150f9381989/a0d0f408-012f-4580-b28d-aaad9ef55a9f_wgs_gdc_realn.bam 84464346595 BAM hg38 ab08e047-4767-496d-8028-4150f9381989 storage1 +C3L-02646.WGS.T.hg38 C3L-02646 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59899683-9cfa-4471-aadd-caf311a8d5de/ffb7f59b-2554-45af-a0be-67a3c8c475e0_wgs_gdc_realn.bam 89037066609 BAM hg38 59899683-9cfa-4471-aadd-caf311a8d5de storage1 +C3L-02648.WGS.A.hg38 C3L-02648 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd93be81-4c63-452e-9e39-720e44e4faf6/c2fd39e9-b12b-443e-8791-39c6b0eca5fb_wgs_gdc_realn.bam 84380514202 BAM hg38 bd93be81-4c63-452e-9e39-720e44e4faf6 storage1 +C3L-02648.WGS.N.hg38 C3L-02648 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6de08dda-1701-465b-8ec2-e16b812b4daa/f67b7239-b480-45f2-99f9-8d791898bc76_wgs_gdc_realn.bam 86561325429 BAM hg38 6de08dda-1701-465b-8ec2-e16b812b4daa storage1 +C3L-02648.WGS.T.hg38 C3L-02648 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/382df309-7ba9-42b0-8b90-62894c829084/ef93c6db-775c-4fb4-9ccf-0a154af43b67_wgs_gdc_realn.bam 85582553962 BAM hg38 382df309-7ba9-42b0-8b90-62894c829084 storage1 +C3L-02649.WGS.A.hg38 C3L-02649 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7bc9a56-3e91-4640-b3e5-70e7a74b0585/9762e18f-229e-44d4-a77d-af8394788f2a_wgs_gdc_realn.bam 88409634597 BAM hg38 b7bc9a56-3e91-4640-b3e5-70e7a74b0585 storage1 +C3L-02649.WGS.N.hg38 C3L-02649 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58138bab-7fb8-46cd-9447-69b243eb6adb/72c299ee-e3f5-424b-b8e1-53670cb12243_wgs_gdc_realn.bam 88133938320 BAM hg38 58138bab-7fb8-46cd-9447-69b243eb6adb storage1 +C3L-02649.WGS.T.hg38 C3L-02649 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2321f9d2-017a-4118-90bf-f8d0f14290e4/0f3d9c3e-663e-4a22-9700-4d5b0b379643_wgs_gdc_realn.bam 90921931098 BAM hg38 2321f9d2-017a-4118-90bf-f8d0f14290e4 storage1 +C3L-02650.WGS.A.hg38 C3L-02650 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dcc38388-bb3e-42d2-9e09-2042c18b85c9/ad2d8ed8-f6d2-4967-b80e-e9861cab8584_wgs_gdc_realn.bam 77182714644 BAM hg38 dcc38388-bb3e-42d2-9e09-2042c18b85c9 storage1 +C3L-02650.WGS.N.hg38 C3L-02650 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/125bd299-2408-4825-86f0-c7dbd224c1ab/016f1a26-26fd-47b4-97f2-e1be18215a1a_wgs_gdc_realn.bam 87897608634 BAM hg38 125bd299-2408-4825-86f0-c7dbd224c1ab storage1 +C3L-02650.WGS.T.hg38 C3L-02650 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9eb68351-9f2d-4b8b-88fb-5df92e88f30e/4562d6e2-e2a9-4bc2-84c3-69e1d9fd3663_wgs_gdc_realn.bam 100032216458 BAM hg38 9eb68351-9f2d-4b8b-88fb-5df92e88f30e storage1 C3L-02651.WGS.N.hg38 C3L-02651 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6abbd1e0-f10a-49f1-9355-98d743ad5c8b/bef61092-18b4-4faa-9ca2-e2df017cd929_wgs_gdc_realn.bam 86494300984 BAM hg38 6abbd1e0-f10a-49f1-9355-98d743ad5c8b storage1 C3L-02651.WGS.T.hg38 C3L-02651 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa35b4bf-09f8-438a-85a2-660ecf36df41/b8885ef7-8413-4a1c-82fd-c9f586ff8b1d_wgs_gdc_realn.bam 88629628251 BAM hg38 aa35b4bf-09f8-438a-85a2-660ecf36df41 storage1 C3L-02654.WGS.N.hg38 C3L-02654 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db223147-200e-40e3-829e-7c0a7764e117/1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wgs_gdc_realn.bam 128662443074 BAM hg38 db223147-200e-40e3-829e-7c0a7764e117 storage1 C3L-02654.WGS.T.hg38 C3L-02654 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8ad9c33-028c-417e-8a4c-c556cdb01b36/aa3dd3eb-75de-489f-bece-cf760cdbbf1f_wgs_gdc_realn.bam 131093375590 BAM hg38 f8ad9c33-028c-417e-8a4c-c556cdb01b36 storage1 +C3L-02660.WGS.A.hg38 C3L-02660 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3588cb3-b835-423f-865d-506fe829e28d/ac3ceb98-8878-4f7e-bedf-e4c65aa39b49_wgs_gdc_realn.bam 85661384855 BAM hg38 b3588cb3-b835-423f-865d-506fe829e28d storage1 +C3L-02660.WGS.N.hg38 C3L-02660 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ec09acd-1d07-4040-8d36-c147a3f86972/24b56530-504e-4423-a833-238e49cb0d18_wgs_gdc_realn.bam 95035411940 BAM hg38 6ec09acd-1d07-4040-8d36-c147a3f86972 storage1 +C3L-02660.WGS.T.hg38 C3L-02660 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/13fb6720-c0ec-4762-b4d9-fe0d3a1774fe/de5ff6c5-79fc-4c44-9d16-79b73e2e8e06_wgs_gdc_realn.bam 85038312517 BAM hg38 13fb6720-c0ec-4762-b4d9-fe0d3a1774fe storage1 C3L-02661.WGS.A.hg38 C3L-02661 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7355c31a-2f71-43a8-98d8-a228241365de/1fc581d1-064b-4142-805d-4567983c81b8_wgs_gdc_realn.bam 92448623248 BAM hg38 7355c31a-2f71-43a8-98d8-a228241365de storage1 C3L-02661.WGS.N.hg38 C3L-02661 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f719b72d-fa85-4e32-9adc-63e4c2721cd5/b80dc241-e5cc-4d1b-8322-4e0a0258717a_wgs_gdc_realn.bam 78295912022 BAM hg38 f719b72d-fa85-4e32-9adc-63e4c2721cd5 storage1 C3L-02661.WGS.T.hg38 C3L-02661 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f24991a2-0ecb-4e5a-8652-4c5beee7e947/b1b5326f-11ac-4f1e-86b8-da1238672b6e_wgs_gdc_realn.bam 90521274557 BAM hg38 f24991a2-0ecb-4e5a-8652-4c5beee7e947 storage1 @@ -978,6 +1152,12 @@ C3L-02662.RNA-Seq.R1.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-02662.RNA-Seq.R2.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45e95154-6823-4405-a610-9a42d4bc5f10/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ NA 45e95154-6823-4405-a610-9a42d4bc5f10 storage1 C3L-02662.WGS.N.hg38 C3L-02662 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfb3b98e-daac-48dc-bd69-85c8886a45c5/ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wgs_gdc_realn.bam 81374312262 BAM hg38 bfb3b98e-daac-48dc-bd69-85c8886a45c5 storage1 C3L-02662.WGS.T.hg38 C3L-02662 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3462153-48c2-4ced-9b84-4179b0f08cb3/48a74119-daeb-4577-9c10-649d7d71f72e_wgs_gdc_realn.bam 81794446548 BAM hg38 c3462153-48c2-4ced-9b84-4179b0f08cb3 storage1 +C3L-02665.WGS.A.hg38 C3L-02665 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10c52c5f-9dc1-47bd-9430-abe69e502b17/79331dda-0cea-40c9-b02c-d051078d3f8e_wgs_gdc_realn.bam 103397245521 BAM hg38 10c52c5f-9dc1-47bd-9430-abe69e502b17 storage1 +C3L-02665.WGS.N.hg38 C3L-02665 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8276e38-9884-486f-a161-fe9cb40fed6f/0340681b-f04e-4e51-8a70-319412cbe7f4_wgs_gdc_realn.bam 94340005437 BAM hg38 c8276e38-9884-486f-a161-fe9cb40fed6f storage1 +C3L-02665.WGS.T.hg38 C3L-02665 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43cd46a6-d168-402e-9ec5-2ae662c2df58/6673be4a-ae2d-48ae-a437-b47350c5a48c_wgs_gdc_realn.bam 84512606625 BAM hg38 43cd46a6-d168-402e-9ec5-2ae662c2df58 storage1 +C3L-02669.WGS.A.hg38 C3L-02669 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3e15b469-8b14-4300-96ac-e12b491f4d95/4c3ef2d4-483c-4dfe-a215-ce07100e7acf_wgs_gdc_realn.bam 86773259935 BAM hg38 3e15b469-8b14-4300-96ac-e12b491f4d95 storage1 +C3L-02669.WGS.N.hg38 C3L-02669 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61410268-e0d8-40a3-9b7b-a81fb9005901/76b8bd0d-a73f-44c1-95f4-e059baba9717_wgs_gdc_realn.bam 80025204906 BAM hg38 61410268-e0d8-40a3-9b7b-a81fb9005901 storage1 +C3L-02669.WGS.T.hg38 C3L-02669 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5177ac64-c113-4dbe-af5e-8ce4c5bd3325/3683abf1-0725-4c58-aa84-dda4cc85ed85_wgs_gdc_realn.bam 103535141933 BAM hg38 5177ac64-c113-4dbe-af5e-8ce4c5bd3325 storage1 C3L-02701.RNA-Seq.genomic.T.hg38 C3L-02701 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b0f648b-fa8d-489c-8895-a0634f2ab29a/29ddf312-1255-43fb-b15e-86014e387d71.rna_seq.genomic.gdc_realn.bam 8681219436 BAM hg38 0b0f648b-fa8d-489c-8895-a0634f2ab29a storage1 C3L-02701.WGS.N.hg38 C3L-02701 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4aa07956-2f19-4be7-8a49-bee74e9439f7/4b9778c1-f481-4848-a179-d1cadaba6491_wgs_gdc_realn.bam 85687698016 BAM hg38 4aa07956-2f19-4be7-8a49-bee74e9439f7 storage1 C3L-02701.WGS.T.hg38 C3L-02701 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc75bb21-726b-4c29-a4e2-782395cc376e/b094badf-1417-4766-aa99-0d8ef35fcf39_wgs_gdc_realn.bam 93420807546 BAM hg38 bc75bb21-726b-4c29-a4e2-782395cc376e storage1 @@ -1028,6 +1208,9 @@ C3L-02857.WGS.T.hg38 C3L-02857 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f7a16a8-5f47-440b-9c14-cd93c403ea68/2027f021-88f5-487d-8df3-c91c4b203e2f.rna_seq.genomic.gdc_realn.bam 8744825521 BAM hg38 4f7a16a8-5f47-440b-9c14-cd93c403ea68 storage1 C3L-02890.WGS.N.hg38 C3L-02890 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9bd78a6a-d4fc-4750-9f39-4e4b9910e32f/2358f2ec-b9f0-44f6-be2c-270b74ce2482_wgs_gdc_realn.bam 94735923334 BAM hg38 9bd78a6a-d4fc-4750-9f39-4e4b9910e32f storage1 C3L-02890.WGS.T.hg38 C3L-02890 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69bede23-40d4-4ba0-987a-dcdbd7643515/348499bf-d9cb-4bc4-baa4-7b72b3f62956_wgs_gdc_realn.bam 88960068667 BAM hg38 69bede23-40d4-4ba0-987a-dcdbd7643515 storage1 +C3L-02891.WGS.A.hg38 C3L-02891 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b354c84-de84-4bda-b5d5-63f0f81838b3/a819c3d7-b052-46a5-8163-c30fab80758c_wgs_gdc_realn.bam 84441855341 BAM hg38 2b354c84-de84-4bda-b5d5-63f0f81838b3 storage1 +C3L-02891.WGS.N.hg38 C3L-02891 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18cc4bc2-f7a7-4314-9b26-a1174489b4b5/dc7a5978-8435-4a74-a321-9975d1b9db7f_wgs_gdc_realn.bam 90780849091 BAM hg38 18cc4bc2-f7a7-4314-9b26-a1174489b4b5 storage1 +C3L-02891.WGS.T.hg38 C3L-02891 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/78215c83-894a-4dca-a826-2361bd047771/b341203a-de92-4bb8-9749-ccb9721ec873_wgs_gdc_realn.bam 97892053925 BAM hg38 78215c83-894a-4dca-a826-2361bd047771 storage1 C3L-02893.WGS.N.hg38 C3L-02893 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a124bff4-c42b-4663-9d6d-ec17825afdcf/82551fd4-96fd-4a18-9f23-2564f03cfb37_wgs_gdc_realn.bam 111472479929 BAM hg38 a124bff4-c42b-4663-9d6d-ec17825afdcf storage1 C3L-02893.WGS.T.hg38 C3L-02893 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e86bbe40-eaf8-4331-9a0d-fa66a3fc0afe/52cb658d-2bc0-4319-9868-58221c5811e2_wgs_gdc_realn.bam 85514404535 BAM hg38 e86bbe40-eaf8-4331-9a0d-fa66a3fc0afe storage1 C3L-02894.WGS.N.hg38 C3L-02894 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68919e37-7f72-4142-9056-d25bd6aae103/08fe61b1-a4ad-4176-bb16-0c9bdfa98c13_wgs_gdc_realn.bam 102216615296 BAM hg38 68919e37-7f72-4142-9056-d25bd6aae103 storage1 @@ -1043,6 +1226,9 @@ C3L-02900.RNA-Seq.chimeric.T.hg38 C3L-02900 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-02900.RNA-Seq.transcriptome.T.hg38 C3L-02900 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0141eda0-eb36-4366-8ef9-1f1e7d4c243a/19731962-7807-4792-a519-8f93504900d5.rna_seq.transcriptome.gdc_realn.bam 8415243299 BAM hg38 0141eda0-eb36-4366-8ef9-1f1e7d4c243a storage1 C3L-02900.WGS.N.hg38 C3L-02900 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ac20d11-64f1-4a61-9d85-5b7463206ccd/6264f251-942e-4eb8-a787-58c3a28a6d66_wgs_gdc_realn.bam 95457873554 BAM hg38 6ac20d11-64f1-4a61-9d85-5b7463206ccd storage1 C3L-02900.WGS.T.hg38 C3L-02900 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abca7dea-8322-4871-b75c-51642cccd475/31973fc9-0507-456d-be4a-1a696ea3cf34_wgs_gdc_realn.bam 94007884048 BAM hg38 abca7dea-8322-4871-b75c-51642cccd475 storage1 +C3L-02951.WGS.A.hg38 C3L-02951 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9489071b-55d3-4f2e-83a8-5859c8a9641c/8346e137-57c1-4c12-ad48-0fb8561ff80e_wgs_gdc_realn.bam 99463677477 BAM hg38 9489071b-55d3-4f2e-83a8-5859c8a9641c storage1 +C3L-02951.WGS.N.hg38 C3L-02951 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9df6ab2-8f0a-485e-a5e7-1dbe20db6169/4df1dc43-1efa-4b94-b67a-20022c5480d9_wgs_gdc_realn.bam 74168944308 BAM hg38 a9df6ab2-8f0a-485e-a5e7-1dbe20db6169 storage1 +C3L-02951.WGS.T.hg38 C3L-02951 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75aef4ef-f9ef-40f5-90f1-2f8d627efcb0/773198bc-d32a-4963-b33a-af0793609e9a_wgs_gdc_realn.bam 79044046007 BAM hg38 75aef4ef-f9ef-40f5-90f1-2f8d627efcb0 storage1 C3L-02953.WGS.N.hg38 C3L-02953 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06bdc9bb-c645-4a26-a2fe-2a38b175b531/9bc1bf3d-4c79-4144-bef0-90730270b764_wgs_gdc_realn.bam 115309510897 BAM hg38 06bdc9bb-c645-4a26-a2fe-2a38b175b531 storage1 C3L-02953.WGS.T.hg38 C3L-02953 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4493f47-d3c8-426c-a1c5-68e2217a1736/e420eef5-8b13-49c1-ab87-f9138d283c9a_wgs_gdc_realn.bam 118165266587 BAM hg38 e4493f47-d3c8-426c-a1c5-68e2217a1736 storage1 C3L-02954.WGS.N.hg38 C3L-02954 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2662d55-b8c2-4a39-85e7-c37d2281cd29/5241b5b0-f264-4a87-804c-b0bff2e35445_wgs_gdc_realn.bam 116359383690 BAM hg38 a2662d55-b8c2-4a39-85e7-c37d2281cd29 storage1 @@ -1058,8 +1244,20 @@ C3L-02958.WGS.N.hg38 C3L-02958 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-02958.WGS.T.hg38 C3L-02958 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66d67499-c526-42b2-840f-113fb36718f8/42d4673a-9890-4752-8cb4-fb60d04e0626_wgs_gdc_realn.bam 112987968042 BAM hg38 66d67499-c526-42b2-840f-113fb36718f8 storage1 C3L-02961.WGS.N.hg38 C3L-02961 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da100a30-a64a-4279-8732-0f0bd5fe3a54/c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wgs_gdc_realn.bam 104998787194 BAM hg38 da100a30-a64a-4279-8732-0f0bd5fe3a54 storage1 C3L-02961.WGS.T.hg38 C3L-02961 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4855b3b-d2bf-44ed-a8da-936c827a9bd6/a32ad1ee-0504-4bcf-93e1-6f4156fe9ed7_wgs_gdc_realn.bam 101775809061 BAM hg38 d4855b3b-d2bf-44ed-a8da-936c827a9bd6 storage1 +C3L-02963.WGS.A.hg38 C3L-02963 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6623be12-a9f6-4f11-b27b-59c7824ae48a/20097d24-a552-4d2a-b448-783b6d1a22b6_wgs_gdc_realn.bam 82234644249 BAM hg38 6623be12-a9f6-4f11-b27b-59c7824ae48a storage1 +C3L-02963.WGS.N.hg38 C3L-02963 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8016d2ee-3e26-4e8f-8084-fe3500f137f9/d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wgs_gdc_realn.bam 93217700054 BAM hg38 8016d2ee-3e26-4e8f-8084-fe3500f137f9 storage1 +C3L-02963.WGS.T.hg38 C3L-02963 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/199340d1-43e3-4722-b6dd-0a2d45d16d11/85b7bdbb-a618-4313-8c74-e456b77e87c7_wgs_gdc_realn.bam 103002752943 BAM hg38 199340d1-43e3-4722-b6dd-0a2d45d16d11 storage1 +C3L-02964.WGS.A.hg38 C3L-02964 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/66040048-17aa-48eb-95db-ed03a65d10a3/6271eedd-fa77-49ab-b900-e35c35ef9756_wgs_gdc_realn.bam 92480773424 BAM hg38 66040048-17aa-48eb-95db-ed03a65d10a3 storage1 +C3L-02964.WGS.N.hg38 C3L-02964 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a90895bc-ccad-45a0-82bf-61a5687c0fef/dec8fef6-3592-4fb4-b0e0-5ade153deb94_wgs_gdc_realn.bam 85170591679 BAM hg38 a90895bc-ccad-45a0-82bf-61a5687c0fef storage1 +C3L-02964.WGS.T.hg38 C3L-02964 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5502135-f4bc-4db5-8cec-1f7e3c72b97d/4fafc3a0-d12b-49b5-94ed-8c778bf2901e_wgs_gdc_realn.bam 85276436807 BAM hg38 e5502135-f4bc-4db5-8cec-1f7e3c72b97d storage1 C3L-02967.WGS.N.hg38 C3L-02967 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4d0c158-330c-4f44-99ec-ddf8f5a8ef41/1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wgs_gdc_realn.bam 103401256299 BAM hg38 b4d0c158-330c-4f44-99ec-ddf8f5a8ef41 storage1 C3L-02967.WGS.T.hg38 C3L-02967 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56cf039d-0b49-4bb9-826d-885242df57f3/5b10df83-32cd-4037-a8c7-108a0db69540_wgs_gdc_realn.bam 87123504863 BAM hg38 56cf039d-0b49-4bb9-826d-885242df57f3 storage1 +C3L-02968.WGS.A.hg38 C3L-02968 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f51a9e67-53d2-466f-8fc4-37c1581886be/1ebfd6b6-905c-49b0-bbae-0914b9b30b55_wgs_gdc_realn.bam 78544372657 BAM hg38 f51a9e67-53d2-466f-8fc4-37c1581886be storage1 +C3L-02968.WGS.N.hg38 C3L-02968 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6360b9dc-ba81-4a30-b7e0-4ef9f66ca0ef/e610b46f-890b-4983-92e8-8068231b156f_wgs_gdc_realn.bam 87170458713 BAM hg38 6360b9dc-ba81-4a30-b7e0-4ef9f66ca0ef storage1 +C3L-02968.WGS.T.hg38 C3L-02968 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd3d17d3-1c72-46e4-812b-54b8a8133692/db738e74-7347-44e7-93c3-128a4de48f7d_wgs_gdc_realn.bam 96292591008 BAM hg38 dd3d17d3-1c72-46e4-812b-54b8a8133692 storage1 +C3L-02969.WGS.A.hg38 C3L-02969 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/151f172b-0b80-4b17-b1d8-7944707c380d/49e0f1b2-1114-41d1-b285-78712af47ee3_wgs_gdc_realn.bam 76359229965 BAM hg38 151f172b-0b80-4b17-b1d8-7944707c380d storage1 +C3L-02969.WGS.N.hg38 C3L-02969 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bea6c5f0-48a8-4bdb-b1c7-f5edb92eca84/0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wgs_gdc_realn.bam 88144850145 BAM hg38 bea6c5f0-48a8-4bdb-b1c7-f5edb92eca84 storage1 +C3L-02969.WGS.T.hg38 C3L-02969 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc40bdfe-a0a4-4332-b495-4beb709c8bdd/6fa25117-7dbe-4157-991c-8df8657eda53_wgs_gdc_realn.bam 85683028892 BAM hg38 fc40bdfe-a0a4-4332-b495-4beb709c8bdd storage1 C3L-02970.RNA-Seq.chimeric.T.hg38 C3L-02970 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4107bce-bafc-40cb-9cac-39d0687333bf/215ee23f-0bee-4208-a70d-f188b8d73b79.rna_seq.chimeric.gdc_realn.bam 73607775 BAM hg38 f4107bce-bafc-40cb-9cac-39d0687333bf storage1 C3L-02970.RNA-Seq.transcriptome.T.hg38 C3L-02970 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98635230-4659-4ec3-9ec9-80e961c7b7fb/215ee23f-0bee-4208-a70d-f188b8d73b79.rna_seq.transcriptome.gdc_realn.bam 7338970743 BAM hg38 98635230-4659-4ec3-9ec9-80e961c7b7fb storage1 C3L-02970.WGS.N.hg38 C3L-02970 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e191426-5a5f-4ae1-8f35-4abfe09561ca/61b7727d-fa5b-4787-8df0-c1c0e0662f06_wgs_gdc_realn.bam 88065989978 BAM hg38 6e191426-5a5f-4ae1-8f35-4abfe09561ca storage1 @@ -1098,6 +1296,8 @@ C3L-03268.WGS.N.hg38 C3L-03268 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-03268.WGS.T.hg38 C3L-03268 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1514eb13-3cb8-4aef-91ea-1d8918d3267a/d49c7553-0062-4add-ab9e-4462b7a8c030_wgs_gdc_realn.bam 99319524451 BAM hg38 1514eb13-3cb8-4aef-91ea-1d8918d3267a storage1 C3L-03271.WGS.N.hg38 C3L-03271 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1699c142-456b-460d-8ae0-7c8eddbb1d4d/561e422d-e4db-4213-8bde-505d3cf49cf7_wgs_gdc_realn.bam 84228170736 BAM hg38 1699c142-456b-460d-8ae0-7c8eddbb1d4d storage1 C3L-03271.WGS.T.hg38 C3L-03271 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f96c07e-aa95-4164-8293-c59b1866b6aa/ce89aed6-750b-4d18-8f28-d4940dc0b546_wgs_gdc_realn.bam 76853161899 BAM hg38 2f96c07e-aa95-4164-8293-c59b1866b6aa storage1 +C3L-03272.WGS.N.hg38 C3L-03272 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34b966ea-7310-4aad-ab2f-3abbff502e84/463e4a08-38ab-408f-ac18-8f6899380f8c_wgs_gdc_realn.bam 92663627417 BAM hg38 34b966ea-7310-4aad-ab2f-3abbff502e84 storage1 +C3L-03272.WGS.T.hg38 C3L-03272 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72f758cf-917a-4a95-b714-d422e6c58128/8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wgs_gdc_realn.bam 82136878579 BAM hg38 72f758cf-917a-4a95-b714-d422e6c58128 storage1 C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e2d71d8-e5ef-458b-be15-58ab0efbaa8b/dc8a291f-e1da-453e-884e-bfb112058607.rna_seq.genomic.gdc_realn.bam 8277980120 BAM hg38 2e2d71d8-e5ef-458b-be15-58ab0efbaa8b storage1 C3L-03350.WGS.N.hg38 C3L-03350 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3aff18dc-c927-4f39-a5f2-e43fbc2a92e8/76d3caa1-56dc-481e-9d3e-e2a8c353c855_wgs_gdc_realn.bam 99427085983 BAM hg38 3aff18dc-c927-4f39-a5f2-e43fbc2a92e8 storage1 C3L-03350.WGS.T.hg38 C3L-03350 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ba0ce7c-be58-4b50-a682-a89f95bc13b0/8441a514-b64c-438e-8146-28af1c73ee54_wgs_gdc_realn.bam 100091921537 BAM hg38 3ba0ce7c-be58-4b50-a682-a89f95bc13b0 storage1 @@ -1188,6 +1388,8 @@ C3L-03639.WGS.N.hg38 C3L-03639 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-03639.WGS.T.hg38 C3L-03639 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/594965a2-2fa4-40a2-b479-392b5e0a4355/18a2e2df-4b2a-4444-8a37-134b95717eba_wgs_gdc_realn.bam 103689067042 BAM hg38 594965a2-2fa4-40a2-b479-392b5e0a4355 storage1 C3L-03642.WGS.N.hg38 C3L-03642 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/354b9f63-8a25-4d68-ac09-fd19d420622d/92c97b23-8846-4d06-b2b2-670f5bb378b7_wgs_gdc_realn.bam 101404143412 BAM hg38 354b9f63-8a25-4d68-ac09-fd19d420622d storage1 C3L-03642.WGS.T.hg38 C3L-03642 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b622dd0f-01de-4a90-8824-bfae022a3a60/edea2be0-85ea-4fc2-956e-8dd70dc6286e_wgs_gdc_realn.bam 121087808075 BAM hg38 b622dd0f-01de-4a90-8824-bfae022a3a60 storage1 +C3L-03678.WGS.N.hg38 C3L-03678 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ed1b874-7344-4479-b1ea-77d7dec97040/0acf70c7-0014-4247-b7e3-674203be4121_wgs_gdc_realn.bam 95620288289 BAM hg38 4ed1b874-7344-4479-b1ea-77d7dec97040 storage1 +C3L-03678.WGS.T.hg38 C3L-03678 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f387e5d-8d4e-4123-abe7-4f07456d80cd/e2a1d57f-6440-4101-81b8-226346ca0ae2_wgs_gdc_realn.bam 90582949605 BAM hg38 1f387e5d-8d4e-4123-abe7-4f07456d80cd storage1 C3L-03679.WGS.N.hg38 C3L-03679 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92c6aeed-036c-44a9-99bd-52b38f97da15/e8f894ad-e0c8-4dd8-b72e-1336b3e1ef3b_wgs_gdc_realn.bam 103667715600 BAM hg38 92c6aeed-036c-44a9-99bd-52b38f97da15 storage1 C3L-03679.WGS.T.hg38 C3L-03679 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65e1d328-70b8-4afa-bcff-c78c3a93593d/0846a033-ae31-467a-a838-707bbc3f2d8d_wgs_gdc_realn.bam 88329417448 BAM hg38 65e1d328-70b8-4afa-bcff-c78c3a93593d storage1 C3L-03681.RNA-Seq.chimeric.T.hg38 C3L-03681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f063124-cddc-4cc8-bffc-5e59a8513034/b13b944c-cbb8-4400-8e6c-4ebdeac56021.rna_seq.chimeric.gdc_realn.bam 36232999 BAM hg38 3f063124-cddc-4cc8-bffc-5e59a8513034 storage1 @@ -1224,10 +1426,19 @@ C3L-03744.RNA-Seq.chimeric.T.hg38 C3L-03744 GBM RNA-Seq tumor /storage1/fs1/m.wy C3L-03744.RNA-Seq.transcriptome.T.hg38 C3L-03744 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf25c460-eff3-4441-a637-ab9c4c4fecab/2923f52c-a269-4e4b-ba3c-1b005eee2066.rna_seq.transcriptome.gdc_realn.bam 10095010838 BAM hg38 cf25c460-eff3-4441-a637-ab9c4c4fecab storage1 C3L-03744.WGS.N.hg38 C3L-03744 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28786672-2983-417e-9c3f-32b2a8e7e114/3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wgs_gdc_realn.bam 76421878020 BAM hg38 28786672-2983-417e-9c3f-32b2a8e7e114 storage1 C3L-03744.WGS.T.hg38 C3L-03744 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/603495d3-0a81-4668-a1c8-74a5bbbe8c6b/b291d9bd-e99f-427c-a1d9-730d69d55a57_wgs_gdc_realn.bam 101148486261 BAM hg38 603495d3-0a81-4668-a1c8-74a5bbbe8c6b storage1 +C3L-03747.WGS.N.hg38 C3L-03747 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f060af66-6986-4c8b-be4f-29950061dabb/388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wgs_gdc_realn.bam 84283984691 BAM hg38 f060af66-6986-4c8b-be4f-29950061dabb storage1 +C3L-03747.WGS.T.hg38 C3L-03747 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab83eaed-187a-4bb1-ad5c-a8e8c03828cc/22d36fbd-33f1-4d30-a20e-a3f59330c5fa_wgs_gdc_realn.bam 94170173043 BAM hg38 ab83eaed-187a-4bb1-ad5c-a8e8c03828cc storage1 C3L-03748.RNA-Seq.chimeric.T.hg38 C3L-03748 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39483958-b645-4fe6-a818-51a1a948f613/f9eb1a8f-7812-44d5-a19d-22350c1f5145.rna_seq.chimeric.gdc_realn.bam 33166772 BAM hg38 39483958-b645-4fe6-a818-51a1a948f613 storage1 C3L-03748.RNA-Seq.transcriptome.T.hg38 C3L-03748 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e76c7c0-bdc5-44a7-9f0d-ceccb9eb7a7c/f9eb1a8f-7812-44d5-a19d-22350c1f5145.rna_seq.transcriptome.gdc_realn.bam 10310258777 BAM hg38 6e76c7c0-bdc5-44a7-9f0d-ceccb9eb7a7c storage1 C3L-03748.WGS.N.hg38 C3L-03748 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad507579-6e47-4698-aa55-5d47304df7dd/cedd1569-11a3-49f4-a54c-36f18c88e15b_wgs_gdc_realn.bam 83504601495 BAM hg38 ad507579-6e47-4698-aa55-5d47304df7dd storage1 C3L-03748.WGS.T.hg38 C3L-03748 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/330758b2-97f5-4111-a2b1-b80145713d3c/9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wgs_gdc_realn.bam 79848899956 BAM hg38 330758b2-97f5-4111-a2b1-b80145713d3c storage1 +C3L-03961.WGS.N.hg38 C3L-03961 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5330bea7-b3fe-45b7-9078-1a99f80b2157/dec7ca10-fdd0-4772-9083-99eb76cada5a_wgs_gdc_realn.bam 80586310895 BAM hg38 5330bea7-b3fe-45b7-9078-1a99f80b2157 storage1 +C3L-03962.WGS.N.hg38 C3L-03962 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b1df6c8-e378-4d45-91e0-142ad3ee7a87/02e2349f-c2ee-479c-81e2-1ce03fb3485e_wgs_gdc_realn.bam 105084569419 BAM hg38 5b1df6c8-e378-4d45-91e0-142ad3ee7a87 storage1 +C3L-03962.WGS.T.hg38 C3L-03962 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f451a309-b730-4310-a594-27fa3985549e/fa7582c9-d7a9-42d8-8fe2-e358ef604ee8_wgs_gdc_realn.bam 78199008186 BAM hg38 f451a309-b730-4310-a594-27fa3985549e storage1 +C3L-03963.WGS.N.hg38 C3L-03963 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98737e65-d960-4a55-be3e-39b0f1372dad/d14970f8-64a4-4186-bec7-ccdf5e2a0505_wgs_gdc_realn.bam 77982457295 BAM hg38 98737e65-d960-4a55-be3e-39b0f1372dad storage1 +C3L-03963.WGS.T.hg38 C3L-03963 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b7b021f-f2d0-4d48-8904-8888170b4959/d2d9af9d-8785-44b7-b3f2-3359c624c777_wgs_gdc_realn.bam 101505490789 BAM hg38 3b7b021f-f2d0-4d48-8904-8888170b4959 storage1 +C3L-03965.WGS.N.hg38 C3L-03965 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4473ede-affb-4d91-a124-be84b540a9b4/9b912644-c500-4133-a97b-215ecd2c4688_wgs_gdc_realn.bam 90428975998 BAM hg38 d4473ede-affb-4d91-a124-be84b540a9b4 storage1 +C3L-03965.WGS.T.hg38 C3L-03965 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b510852-fab6-4526-8f7b-7b588f18c8a6/2e89777b-80db-4682-8fd6-a3e5e2263f36_wgs_gdc_realn.bam 100040345060 BAM hg38 9b510852-fab6-4526-8f7b-7b588f18c8a6 storage1 C3L-03968.RNA-Seq.chimeric.T.hg38 C3L-03968 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cdb13d84-1554-43e1-95bd-ba341cefac68/b9da1e14-7929-46ba-8e1d-c25682ba7df5.rna_seq.chimeric.gdc_realn.bam 88996732 BAM hg38 cdb13d84-1554-43e1-95bd-ba341cefac68 storage1 C3L-03968.RNA-Seq.transcriptome.T.hg38 C3L-03968 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2965b6ed-aa86-4091-85c4-5f4451d15b3e/b9da1e14-7929-46ba-8e1d-c25682ba7df5.rna_seq.transcriptome.gdc_realn.bam 8363388866 BAM hg38 2965b6ed-aa86-4091-85c4-5f4451d15b3e storage1 C3L-03968.WGS.N.hg38 C3L-03968 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b49821e-bb58-4201-ae96-cb252e209018/8b735522-06d1-4074-adb7-0f326c2842b4_wgs_gdc_realn.bam 75690377017 BAM hg38 1b49821e-bb58-4201-ae96-cb252e209018 storage1 @@ -1240,6 +1451,10 @@ C3L-03984.WGS.N.hg38 C3L-03984 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-03984.WGS.T.hg38 C3L-03984 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad4247d2-7bf6-452f-bf98-b8e7a65aa17d/5a5eb3fb-fcca-47bf-be8e-7431634a2361_wgs_gdc_realn.bam 105709164883 BAM hg38 ad4247d2-7bf6-452f-bf98-b8e7a65aa17d storage1 C3L-03985.WGS.N.hg38 C3L-03985 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5aba0e04-2e1f-4ae7-918c-8261be9bcddb/ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wgs_gdc_realn.bam 122987289593 BAM hg38 5aba0e04-2e1f-4ae7-918c-8261be9bcddb storage1 C3L-03985.WGS.T.hg38 C3L-03985 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/836e8686-90ce-4136-9115-edaddaa819c6/25c995d7-c22e-4ac7-8e76-bc68a944f046_wgs_gdc_realn.bam 84388858786 BAM hg38 836e8686-90ce-4136-9115-edaddaa819c6 storage1 +C3L-04013.WGS.N.hg38 C3L-04013 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11e71a75-c179-414d-a78f-03aa26e8ef3b/0e3452f6-3bfd-46b5-b974-1b142a82845e_wgs_gdc_realn.bam 92470461052 BAM hg38 11e71a75-c179-414d-a78f-03aa26e8ef3b storage1 +C3L-04013.WGS.T.hg38 C3L-04013 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa19974e-c452-4f58-ac86-f1a1e9d5439d/7f8bd24f-62f5-4fbc-8633-378805089c7c_wgs_gdc_realn.bam 88135792490 BAM hg38 fa19974e-c452-4f58-ac86-f1a1e9d5439d storage1 +C3L-04014.WGS.N.hg38 C3L-04014 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8cbda257-6835-4990-81de-e5ffa268a15f/9eb60886-10fc-4637-8745-d721a4f514e5_wgs_gdc_realn.bam 82820611592 BAM hg38 8cbda257-6835-4990-81de-e5ffa268a15f storage1 +C3L-04014.WGS.T.hg38 C3L-04014 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab5e2db8-499b-456b-a9a7-7a926b1b48f1/295863ad-93e1-4be4-b13e-0bbd4ca64aff_wgs_gdc_realn.bam 94589190053 BAM hg38 ab5e2db8-499b-456b-a9a7-7a926b1b48f1 storage1 C3L-04025.WGS.N.hg38 C3L-04025 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f8f0f1c-af93-4c0d-9cf3-2f114ce56c95/380bd699-e9e1-4b6e-ae17-2ab7d0daca42_wgs_gdc_realn.bam 87489177823 BAM hg38 2f8f0f1c-af93-4c0d-9cf3-2f114ce56c95 storage1 C3L-04025.WGS.T.hg38 C3L-04025 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c74bf74c-599d-4db3-ace0-f15122c73c73/e1676c01-5acc-48b5-99c3-2077a6ed1505_wgs_gdc_realn.bam 86028509691 BAM hg38 c74bf74c-599d-4db3-ace0-f15122c73c73 storage1 C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a729717a-d57e-434d-a30b-abb1e9732b13/44a768a7-1cab-4b18-9307-9d1c136e234b.rna_seq.genomic.gdc_realn.bam 8410259578 BAM hg38 a729717a-d57e-434d-a30b-abb1e9732b13 storage1 @@ -1262,6 +1477,8 @@ C3L-04038.WGS.N.hg38 C3L-04038 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-04038.WGS.T.hg38 C3L-04038 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b5bfea2-570b-4285-85db-df3e57f7fbf6/17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wgs_gdc_realn.bam 82873631851 BAM hg38 9b5bfea2-570b-4285-85db-df3e57f7fbf6 storage1 C3L-04040.WGS.N.hg38 C3L-04040 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f/3125ce10-eeb2-4a71-9101-3576d527d1a7_wgs_gdc_realn.bam 110179630465 BAM hg38 5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f storage1 C3L-04040.WGS.T.hg38 C3L-04040 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46922002-23c9-47e7-8119-036e1d14f8e8/f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wgs_gdc_realn.bam 115023520974 BAM hg38 46922002-23c9-47e7-8119-036e1d14f8e8 storage1 +C3L-04071.WGS.N.hg38 C3L-04071 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6072dfd0-63ad-46d4-a039-35a0f851216b/3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wgs_gdc_realn.bam 94307388841 BAM hg38 6072dfd0-63ad-46d4-a039-35a0f851216b storage1 +C3L-04071.WGS.T.hg38 C3L-04071 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55d13f2d-9a6a-49ec-a9f2-258019a74413/80cdb7b5-f5b1-4343-a227-34c9e836f2ad_wgs_gdc_realn.bam 83429903448 BAM hg38 55d13f2d-9a6a-49ec-a9f2-258019a74413 storage1 C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b19262e9-e49a-41bb-b23b-ecdcb74293a0/94fdc446-7e55-4021-9204-139677fecadb.rna_seq.genomic.gdc_realn.bam 10047178019 BAM hg38 b19262e9-e49a-41bb-b23b-ecdcb74293a0 storage1 C3L-04072.RNA-Seq.genomic.T.hg38 C3L-04072 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/703bed27-f995-4a9e-bcf5-39213337b456/87944582-d98e-4afd-a00f-4fd6ff8d5940.rna_seq.genomic.gdc_realn.bam 8484341677 BAM hg38 703bed27-f995-4a9e-bcf5-39213337b456 storage1 C3L-04072.WGS.N.hg38 C3L-04072 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d9437e6-d8dd-44ab-b1e5-a68bb179cc11/e7f1b14d-4706-4e02-8833-4e72f56a82c0_wgs_gdc_realn.bam 101107887523 BAM hg38 4d9437e6-d8dd-44ab-b1e5-a68bb179cc11 storage1 @@ -1302,6 +1519,8 @@ C3L-04362.WGS.N.hg38 C3L-04362 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-04362.WGS.T.hg38 C3L-04362 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dddd8326-8131-4431-8f69-3bb571ce57e9/54bcff95-090d-41c1-92c6-66140f4b3ab9_wgs_gdc_realn.bam 73951272849 BAM hg38 dddd8326-8131-4431-8f69-3bb571ce57e9 storage1 C3L-04365.WGS.N.hg38 C3L-04365 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a65d2756-edfd-4640-ac1a-10ef43808513/a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wgs_gdc_realn.bam 124296999433 BAM hg38 a65d2756-edfd-4640-ac1a-10ef43808513 storage1 C3L-04365.WGS.T.hg38 C3L-04365 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c8c1e75-8f8f-448f-a584-cd062f4a2f7c/f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wgs_gdc_realn.bam 88704198855 BAM hg38 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c storage1 +C3L-04391.WGS.N.hg38 C3L-04391 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d22a2984-330a-4fda-b33b-85c32cd191ea/7d68aadc-cfad-474d-8cbd-98866b356245_wgs_gdc_realn.bam 81091303675 BAM hg38 d22a2984-330a-4fda-b33b-85c32cd191ea storage1 +C3L-04391.WGS.T.hg38 C3L-04391 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0693edc4-6418-4abd-a114-d378f88dd700/a52caf88-af54-482a-adcc-5c303877aa1b_wgs_gdc_realn.bam 81007262049 BAM hg38 0693edc4-6418-4abd-a114-d378f88dd700 storage1 C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2d69a8c-7132-4daf-8895-7ceaaaafdbb9/fd2439d2-945b-4f58-911f-839ecc4ae8fb.rna_seq.genomic.gdc_realn.bam 7728076176 BAM hg38 d2d69a8c-7132-4daf-8895-7ceaaaafdbb9 storage1 C3L-04473.WGS.N.hg38 C3L-04473 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b7cb28b-6f79-412d-bfb2-a51570017a54/04647a29-ea3a-414e-9087-cbc7da3dc358_wgs_gdc_realn.bam 99432240175 BAM hg38 1b7cb28b-6f79-412d-bfb2-a51570017a54 storage1 C3L-04473.WGS.T.hg38 C3L-04473 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ffb2eec6-0b15-452c-b504-90f3899edb47/3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_wgs_gdc_realn.bam 108219075922 BAM hg38 ffb2eec6-0b15-452c-b504-90f3899edb47 storage1 @@ -1357,6 +1576,12 @@ C3L-04849.WGS.T.hg38 C3L-04849 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f000225d-5838-4974-a814-06f07b9733e1/9486a946-d6e0-42d9-961e-a1c14d606a4e.rna_seq.genomic.gdc_realn.bam 8944027681 BAM hg38 f000225d-5838-4974-a814-06f07b9733e1 storage1 C3L-04853.WGS.N.hg38 C3L-04853 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/048bd256-f280-4b1b-96f6-c3c55614fa35/bade3320-65ef-4e7b-82af-e3a0f2a88a55_wgs_gdc_realn.bam 113456877658 BAM hg38 048bd256-f280-4b1b-96f6-c3c55614fa35 storage1 C3L-04853.WGS.T.hg38 C3L-04853 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b55e752a-e1d0-4ac8-8d6d-c28b1ee96967/e37b44f0-ad8b-4afd-b48b-67cc920c40cf_wgs_gdc_realn.bam 178397735894 BAM hg38 b55e752a-e1d0-4ac8-8d6d-c28b1ee96967 storage1 +C3L-05571.WGS.N.hg38 C3L-05571 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04fe5225-2758-4691-b709-934aa7656050/2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wgs_gdc_realn.bam 72991842163 BAM hg38 04fe5225-2758-4691-b709-934aa7656050 storage1 +C3L-05571.WGS.T.hg38 C3L-05571 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a1d1971-388c-472e-a6ac-c3608817ee7d/63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wgs_gdc_realn.bam 76185528314 BAM hg38 0a1d1971-388c-472e-a6ac-c3608817ee7d storage1 +C3L-05848.WGS.N.hg38 C3L-05848 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9d8dbc3-28d5-4a81-99c1-88246d743f56/7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wgs_gdc_realn.bam 64633587295 BAM hg38 b9d8dbc3-28d5-4a81-99c1-88246d743f56 storage1 +C3L-05848.WGS.T.hg38 C3L-05848 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11884c29-689e-4c70-adfb-9490351d8c07/4371e677-059d-4c39-9ec3-fdbad29b064e_wgs_gdc_realn.bam 76555436982 BAM hg38 11884c29-689e-4c70-adfb-9490351d8c07 storage1 +C3L-05849.WGS.N.hg38 C3L-05849 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5aa3512e-d383-486a-ac23-d66db53f7388/138f530d-492b-4fc7-aba2-be1c9dc10174_wgs_gdc_realn.bam 54235420135 BAM hg38 5aa3512e-d383-486a-ac23-d66db53f7388 storage1 +C3L-05849.WGS.T.hg38 C3L-05849 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e/6966a7ce-9a95-4aa0-a41f-0ceb9404607b_wgs_gdc_realn.bam 70891852385 BAM hg38 d3be3cd8-bc72-4e35-a6dd-1155cf4e9d0e storage1 C3N-00148.WGS.A.hg38 C3N-00148 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/31226045-9a66-42b4-bfef-6e2b3eec8b23/03f3a930-23ac-4022-a180-7eddf513f3a6_wgs_gdc_realn.bam 78288422049 BAM hg38 31226045-9a66-42b4-bfef-6e2b3eec8b23 storage1 C3N-00148.WGS.N.hg38 C3N-00148 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aeb1deff-af9c-4977-8b98-e3ebfc0653bd/925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 137507958986 BAM hg38 aeb1deff-af9c-4977-8b98-e3ebfc0653bd storage1 C3N-00148.WGS.T.HET_r6OkJK.hg38 C3N-00148 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b106741d-59eb-42e6-b699-1d03231ca80b/c3d0c798-3921-4d07-b355-d0c56d3e85c0_wgs_gdc_realn.bam 83772692900 BAM hg38 b106741d-59eb-42e6-b699-1d03231ca80b storage1 @@ -1422,9 +1647,13 @@ C3N-00203.WGS.N.hg38 C3N-00203 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-00203.WGS.T.hg38 C3N-00203 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8256f05b-b59c-452b-984d-20cfb560be40/506d087f-a4aa-433d-9ecf-a1d908ab50f8_wgs_gdc_realn.bam 86129127596 BAM hg38 8256f05b-b59c-452b-984d-20cfb560be40 storage1 C3N-00204.WGS.N.hg38 C3N-00204 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e448c645-2d99-456b-8e3f-965f5d0b0d10/c93de7f1-762b-4ca7-a1e4-8f959c170856_wgs_gdc_realn.bam 81401583726 BAM hg38 e448c645-2d99-456b-8e3f-965f5d0b0d10 storage1 C3N-00204.WGS.T.hg38 C3N-00204 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55f9d24b-032f-46ac-9cf7-f92c767a90c2/5eab67d6-ad15-43ea-b7d4-265945e3ba09_wgs_gdc_realn.bam 104382998256 BAM hg38 55f9d24b-032f-46ac-9cf7-f92c767a90c2 storage1 +C3N-00211.WGS.N.hg38 C3N-00211 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ebfa20c-097f-47c4-afb3-9688c6c5b074/bbab7603-c304-4c44-a735-91e677083ee9_wgs_gdc_realn.bam 98091811789 BAM hg38 0ebfa20c-097f-47c4-afb3-9688c6c5b074 storage1 +C3N-00211.WGS.T.hg38 C3N-00211 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/97d83f5f-a371-45c5-8075-bb02b43655ce/7ac573c7-ed1b-4085-a310-805e1aff4b20_wgs_gdc_realn.bam 108456934879 BAM hg38 97d83f5f-a371-45c5-8075-bb02b43655ce storage1 C3N-00217.WGS.A.hg38 C3N-00217 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a7ee755-ceea-47c5-ae5c-fdd1ee99b963/e21dba0d-f7c8-43ca-abe2-d532ac286c53_wgs_gdc_realn.bam 83476535203 BAM hg38 8a7ee755-ceea-47c5-ae5c-fdd1ee99b963 storage1 C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c0fa13b-ae71-42df-800a-a9480cc67133/df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM hg38 7c0fa13b-ae71-42df-800a-a9480cc67133 storage1 C3N-00217.WGS.T.hg38 C3N-00217 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3101c27-4922-4e8e-890a-d8f838e04751/e6268f9c-fd73-4163-8824-eca1dab52d32_wgs_gdc_realn.bam 111488141459 BAM hg38 c3101c27-4922-4e8e-890a-d8f838e04751 storage1 +C3N-00221.WGS.N.hg38 C3N-00221 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20eadfd0-2177-4684-bd76-6191a4387ec9/5c67075a-e5ac-4324-80fd-d1d15e0331da_wgs_gdc_realn.bam 89632830119 BAM hg38 20eadfd0-2177-4684-bd76-6191a4387ec9 storage1 +C3N-00221.WGS.T.hg38 C3N-00221 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54836e99-46d5-40d2-b523-f4b782588dd0/474f12bc-db60-42d9-b11b-400bf4338ada_wgs_gdc_realn.bam 89726320658 BAM hg38 54836e99-46d5-40d2-b523-f4b782588dd0 storage1 C3N-00223.WGS.A.hg38 C3N-00223 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/012bb22b-c53b-45b2-a1d3-43e7f96f2474/82c5882b-db28-4fef-a849-52a1e67e9422_wgs_gdc_realn.bam 86279209348 BAM hg38 012bb22b-c53b-45b2-a1d3-43e7f96f2474 storage1 C3N-00223.WGS.N.hg38 C3N-00223 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eab0894a-13ab-4a8f-8de5-1a503dd3a441/1bd914de-77b5-40a2-92cd-d59097de853f_wgs_gdc_realn.bam 97741387306 BAM hg38 eab0894a-13ab-4a8f-8de5-1a503dd3a441 storage1 C3N-00223.WGS.T.hg38 C3N-00223 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f99a50c7-1a1d-4db0-9e9c-4ce5b16e60c4/c21b39c5-2ee8-4071-832e-febc767e64aa_wgs_gdc_realn.bam 89060004286 BAM hg38 f99a50c7-1a1d-4db0-9e9c-4ce5b16e60c4 storage1 @@ -1436,6 +1665,8 @@ C3N-00244.WGS.N.hg38 C3N-00244 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-00244.WGS.T.hg38 C3N-00244 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/63367d7f-c123-41de-82d0-449663286b8a/0e504ad9-bd5a-4c37-8996-66032855966d_gdc_realn.bam 108997975791 BAM hg38 63367d7f-c123-41de-82d0-449663286b8a storage1 C3N-00246.WGS.N.hg38 C3N-00246 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5c9b3fd4-a694-4304-a7a6-0e84d4fa373e/ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 141378006084 BAM hg38 5c9b3fd4-a694-4304-a7a6-0e84d4fa373e storage1 C3N-00246.WGS.T.hg38 C3N-00246 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2169708d-9ece-40d3-a19d-8ad0b1345e10/0c549f20-30eb-4517-b94a-116c0f1e6755_gdc_realn.bam 101429143329 BAM hg38 2169708d-9ece-40d3-a19d-8ad0b1345e10 storage1 +C3N-00247.WGS.N.hg38 C3N-00247 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53d1890c-8b29-487f-a73a-5bf0c6ef901d/864d0707-63aa-439f-8fcc-cbe77d2235bb_wgs_gdc_realn.bam 89697207318 BAM hg38 53d1890c-8b29-487f-a73a-5bf0c6ef901d storage1 +C3N-00247.WGS.T.hg38 C3N-00247 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe418d3f-6a3b-468d-979a-bd4a4a941546/d8775fea-842f-49cd-a59c-e95128566a32_wgs_gdc_realn.bam 84772160370 BAM hg38 fe418d3f-6a3b-468d-979a-bd4a4a941546 storage1 C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d9f735ab-743e-4cdd-8c04-8fea0056e4a0/c0d29ef9-858d-4b65-a27d-d64f5f8a3ba9.rna_seq.genomic.gdc_realn.bam 8810349366 BAM hg38 d9f735ab-743e-4cdd-8c04-8fea0056e4a0 storage1 C3N-00249.WGS.A.hg38 C3N-00249 PDA WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dc33b42-8c3b-442f-8ad9-9b34ffc488c0/06e41ea8-02fb-402b-ad68-51acac08b514_wgs_gdc_realn.bam 84152106557 BAM hg38 5dc33b42-8c3b-442f-8ad9-9b34ffc488c0 storage1 C3N-00249.WGS.N.hg38 C3N-00249 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0db8bf92-5008-4807-96a7-940e4e22fadc/665f6e49-5c68-43f5-9fe9-67ab623e3bce_gdc_realn.bam 99588228315 BAM hg38 0db8bf92-5008-4807-96a7-940e4e22fadc storage1 @@ -1467,6 +1698,8 @@ C3N-00306.WGS.T.hg38 C3N-00306 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3N-00307.WGS.A.hg38 C3N-00307 HNSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/db760550-0155-437c-85b9-dbdd23ab008c/76a79796-e8d4-4f45-9412-3d346ab171de_wgs_gdc_realn.bam 86508213236 BAM hg38 db760550-0155-437c-85b9-dbdd23ab008c storage1 C3N-00307.WGS.N.hg38 C3N-00307 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7000ec75-4eee-4e03-acf5-8fc555c3b981/8e8a8a98-dbf5-4628-bb3e-cb0bc5eac907_gdc_realn.bam 124905417983 BAM hg38 7000ec75-4eee-4e03-acf5-8fc555c3b981 storage1 C3N-00307.WGS.T.hg38 C3N-00307 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1d02572-a87c-45b5-bc41-c533348d7d6d/27fa7c90-11ae-4586-85e7-fb2e269ad442_gdc_realn.bam 113657057767 BAM hg38 a1d02572-a87c-45b5-bc41-c533348d7d6d storage1 +C3N-00309.WGS.N.hg38 C3N-00309 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbd36f17-35ca-4bfe-b795-2fabe3967c6f/1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 115288393197 BAM hg38 fbd36f17-35ca-4bfe-b795-2fabe3967c6f storage1 +C3N-00309.WGS.T.hg38 C3N-00309 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8dcbc14e-ef8c-4970-bad9-7c667a6c3005/433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 92572352153 BAM hg38 8dcbc14e-ef8c-4970-bad9-7c667a6c3005 storage1 C3N-00310.WGS.A.hg38 C3N-00310 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d35a6db6-a200-4083-af00-30b1de25d491/ebba4dd0-7cf4-4b4f-9886-bb48ade6b588_wgs_gdc_realn.bam 83264264292 BAM hg38 d35a6db6-a200-4083-af00-30b1de25d491 storage1 C3N-00310.WGS.N.hg38 C3N-00310 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2df558b7-8ba4-4409-944d-239833b51a3d/46d15fa0-e832-47c8-a5ba-a1caca39b8ad_gdc_realn.bam 106783168790 BAM hg38 2df558b7-8ba4-4409-944d-239833b51a3d storage1 C3N-00310.WGS.T.HET_r0p5N2.hg38 C3N-00310 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/162da098-c0ce-4b31-acf6-0d3998bbf8a9/5959cbb5-44c4-4969-8451-73e5af3e1ec1_wgs_gdc_realn.bam 74019923289 BAM hg38 162da098-c0ce-4b31-acf6-0d3998bbf8a9 storage1 @@ -1574,6 +1807,9 @@ C3N-00494.WGS.T.hg38 C3N-00494 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3N-00495.WGS.A.hg38 C3N-00495 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/073a5b62-68ed-432d-a7d3-bb77e2534531/18845e06-84c7-4e8c-b77f-eb2dd229f458_wgs_gdc_realn.bam 90460686899 BAM hg38 073a5b62-68ed-432d-a7d3-bb77e2534531 storage1 C3N-00495.WGS.N.hg38 C3N-00495 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61a39a45-33d3-49bb-b5fd-da1d6bd4fe0c/92a60f1e-d6d9-4eed-9b90-d50c151d0381_gdc_realn.bam 95423514621 BAM hg38 61a39a45-33d3-49bb-b5fd-da1d6bd4fe0c storage1 C3N-00495.WGS.T.hg38 C3N-00495 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/675b3ccf-2515-4b66-a988-e2a2bf7dbc33/77acae83-6dc6-4efe-8c93-1008974b60d9_gdc_realn.bam 101508453801 BAM hg38 675b3ccf-2515-4b66-a988-e2a2bf7dbc33 storage1 +C3N-00497.WGS.A.hg38 C3N-00497 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bec1eae8-9b6c-4139-ac14-8ae15ae345d1/baf7ec82-a326-4be6-a469-1a24548643f1_wgs_gdc_realn.bam 81993469330 BAM hg38 bec1eae8-9b6c-4139-ac14-8ae15ae345d1 storage1 +C3N-00497.WGS.N.hg38 C3N-00497 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/573a65d6-7991-4edf-a387-fda73368928e/ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 91139802227 BAM hg38 573a65d6-7991-4edf-a387-fda73368928e storage1 +C3N-00497.WGS.T.hg38 C3N-00497 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24ad9c9b-7bb0-48bf-92ec-d8c5fe53e3ef/a505c2ad-3df9-4e1d-a4c0-de78601088a6_gdc_realn.bam 93673276262 BAM hg38 24ad9c9b-7bb0-48bf-92ec-d8c5fe53e3ef storage1 C3N-00498.WGS.N.hg38 C3N-00498 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba88d55b-5908-4a0a-8e8b-72e4af321ed1/ae19af2b-2847-48a7-bbd8-413c8b0d3720_gdc_realn.bam 98249186693 BAM hg38 ba88d55b-5908-4a0a-8e8b-72e4af321ed1 storage1 C3N-00498.WGS.T.hg38 C3N-00498 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07e10191-4dd1-4a4f-be4a-89e7bb7ef9a4/2d6748ff-846e-4f6c-9278-22f421c7a32a_gdc_realn.bam 105046099295 BAM hg38 07e10191-4dd1-4a4f-be4a-89e7bb7ef9a4 storage1 C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58fe84ae-8f6a-442e-89d6-c59e3999e413/055f3a0f-d48e-409d-9e1d-90c26cc6bebc.rna_seq.genomic.gdc_realn.bam 8061985822 BAM hg38 58fe84ae-8f6a-442e-89d6-c59e3999e413 storage1 @@ -1635,6 +1871,9 @@ C3N-00551.WGS.T.hg38 C3N-00551 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3N-00552.WGS.A.hg38 C3N-00552 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e69d7c7-d920-4075-9d61-ca2d891ffc99/516de7b2-eddb-4b15-869a-4e1ef56abce4_wgs_gdc_realn.bam 84673363958 BAM hg38 4e69d7c7-d920-4075-9d61-ca2d891ffc99 storage1 C3N-00552.WGS.N.hg38 C3N-00552 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f3922ca-65e6-425b-b9a6-6726467bd527/397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 128714272978 BAM hg38 3f3922ca-65e6-425b-b9a6-6726467bd527 storage1 C3N-00552.WGS.T.hg38 C3N-00552 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/385a6831-e760-4f9d-9aaf-4a1bf92ecb7d/08423635-fe99-41bf-96a0-cdea06897bde_gdc_realn.bam 103147443378 BAM hg38 385a6831-e760-4f9d-9aaf-4a1bf92ecb7d storage1 +C3N-00555.WGS.A.hg38 C3N-00555 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a144f99d-1738-4d9a-90c9-64eff17fb789/7ad4d839-7612-4d70-97ac-e0ee7920826a_wgs_gdc_realn.bam 75502390228 BAM hg38 a144f99d-1738-4d9a-90c9-64eff17fb789 storage1 +C3N-00555.WGS.N.hg38 C3N-00555 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df90a8f7-91fe-4249-a664-3fb9ceb71940/8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 112252028059 BAM hg38 df90a8f7-91fe-4249-a664-3fb9ceb71940 storage1 +C3N-00555.WGS.T.hg38 C3N-00555 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6dce2979-1a93-400d-a979-7c209f140b4a/415e2d1f-8d86-4cd3-bdd2-45526a993d5d_gdc_realn.bam 114651923867 BAM hg38 6dce2979-1a93-400d-a979-7c209f140b4a storage1 C3N-00556.WGS.A.hg38 C3N-00556 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/120fbc7e-c843-483a-95c0-953f3fca0c2f/d9194d74-2daa-4404-80b7-79fbd4ec2ba1_wgs_gdc_realn.bam 85911873931 BAM hg38 120fbc7e-c843-483a-95c0-953f3fca0c2f storage1 C3N-00556.WGS.N.hg38 C3N-00556 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b7a4651a-a059-4b4e-955f-f94e03509855/b0e167ba-7294-454e-bb50-8924f1495898_wgs_gdc_realn.bam 94439292998 BAM hg38 b7a4651a-a059-4b4e-955f-f94e03509855 storage1 C3N-00556.WGS.T.hg38 C3N-00556 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c103a65-5a60-4335-9cf0-651614b6a4e2/03737151-19b0-46c6-a74d-cdc16b25f2cb_wgs_gdc_realn.bam 96817508581 BAM hg38 8c103a65-5a60-4335-9cf0-651614b6a4e2 storage1 @@ -1681,12 +1920,20 @@ C3N-00647.WGS.N.hg38 C3N-00647 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-00647.WGS.T.hg38 C3N-00647 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6dceaf1-e428-4b81-9215-828b86c8e45f/adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wgs_gdc_realn.bam 90350301604 BAM hg38 f6dceaf1-e428-4b81-9215-828b86c8e45f storage1 C3N-00661.RNA-Seq.chimeric.T.hg38 C3N-00661 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43b57e20-0107-4d3a-a04c-880529c115f8/b260219c-c945-48ed-8b9f-288a773bd1bb.rna_seq.chimeric.gdc_realn.bam 43166370 BAM hg38 43b57e20-0107-4d3a-a04c-880529c115f8 storage1 C3N-00661.RNA-Seq.transcriptome.T.hg38 C3N-00661 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/067bbb65-a504-44d4-8c1c-f4338669306a/b260219c-c945-48ed-8b9f-288a773bd1bb.rna_seq.transcriptome.gdc_realn.bam 9055178451 BAM hg38 067bbb65-a504-44d4-8c1c-f4338669306a storage1 +C3N-00661.WGS.N.hg38 C3N-00661 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f/e997aa99-cb00-4512-ba9d-89c014720977_wgs_gdc_realn.bam 91546572846 BAM hg38 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f storage1 +C3N-00661.WGS.T.hg38 C3N-00661 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fed7e32-d8c9-46cf-8ace-368ede492a80/3bce098d-2249-4ea7-8832-b1a436035810_wgs_gdc_realn.bam 98029268406 BAM hg38 2fed7e32-d8c9-46cf-8ace-368ede492a80 storage1 C3N-00662.RNA-Seq.chimeric.T.hg38 C3N-00662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a98f9d50-9175-4a4e-aeb0-482032ef7535/7ecb1fa8-f5c1-40b6-8909-8a6232ae461f.rna_seq.chimeric.gdc_realn.bam 38679363 BAM hg38 a98f9d50-9175-4a4e-aeb0-482032ef7535 storage1 C3N-00662.RNA-Seq.transcriptome.T.hg38 C3N-00662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/caa0a2cb-e6ef-42a7-a86c-7ab237d78bf1/7ecb1fa8-f5c1-40b6-8909-8a6232ae461f.rna_seq.transcriptome.gdc_realn.bam 7440177034 BAM hg38 caa0a2cb-e6ef-42a7-a86c-7ab237d78bf1 storage1 +C3N-00662.WGS.N.hg38 C3N-00662 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd1e269b-54b0-4731-a58e-dd1c5f87c097/8c165614-a7de-4661-b701-726d28c8ac3a_wgs_gdc_realn.bam 84160516593 BAM hg38 dd1e269b-54b0-4731-a58e-dd1c5f87c097 storage1 +C3N-00662.WGS.T.hg38 C3N-00662 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/071aca22-1581-46de-b6d5-7b64afeb0d85/8ef2e973-1a92-476d-b73a-10a37332e9d7_wgs_gdc_realn.bam 100057036877 BAM hg38 071aca22-1581-46de-b6d5-7b64afeb0d85 storage1 C3N-00663.RNA-Seq.chimeric.T.hg38 C3N-00663 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b0b8575-1dde-406d-b7e0-2ec1b6336e10/959a2a16-9b32-473f-84ac-9dc9f81d5ec2.rna_seq.chimeric.gdc_realn.bam 54147653 BAM hg38 1b0b8575-1dde-406d-b7e0-2ec1b6336e10 storage1 C3N-00663.RNA-Seq.transcriptome.T.hg38 C3N-00663 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53b9d4b4-c7d4-4d9e-b4b2-45b2282c3585/959a2a16-9b32-473f-84ac-9dc9f81d5ec2.rna_seq.transcriptome.gdc_realn.bam 7516681142 BAM hg38 53b9d4b4-c7d4-4d9e-b4b2-45b2282c3585 storage1 +C3N-00663.WGS.N.hg38 C3N-00663 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6582bf3-3f98-46b1-a149-7997f5009bda/a1aa3a23-f590-48d2-b559-2340afcb3e6c_wgs_gdc_realn.bam 115995719987 BAM hg38 d6582bf3-3f98-46b1-a149-7997f5009bda storage1 +C3N-00663.WGS.T.hg38 C3N-00663 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65c5d898-e316-4071-87cd-f1341762fd48/cd98c349-930d-4cd6-a2db-5bb1a7f4951b_wgs_gdc_realn.bam 91452960453 BAM hg38 65c5d898-e316-4071-87cd-f1341762fd48 storage1 C3N-00665.RNA-Seq.chimeric.T.hg38 C3N-00665 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3251b2a4-b1fd-4cd0-a5cb-9953ce08b597/48d1a5e8-481e-4b3f-94ac-6c297f0e3ef5.rna_seq.chimeric.gdc_realn.bam 34990594 BAM hg38 3251b2a4-b1fd-4cd0-a5cb-9953ce08b597 storage1 C3N-00665.RNA-Seq.transcriptome.T.hg38 C3N-00665 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4fbbe94-f99a-4dfb-abc3-35971fe83bde/48d1a5e8-481e-4b3f-94ac-6c297f0e3ef5.rna_seq.transcriptome.gdc_realn.bam 10659390306 BAM hg38 f4fbbe94-f99a-4dfb-abc3-35971fe83bde storage1 +C3N-00665.WGS.N.hg38 C3N-00665 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/394b7faf-cc03-4e59-a36c-01fbfba7449c/847e2c7e-5327-4064-a364-9e8c65bfd949_wgs_gdc_realn.bam 99580079735 BAM hg38 394b7faf-cc03-4e59-a36c-01fbfba7449c storage1 +C3N-00665.WGS.T.hg38 C3N-00665 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aabf00cc-4646-4c76-ba85-e71a9918937b/f2365384-0941-41c2-8356-e5cb86183369_wgs_gdc_realn.bam 97209041208 BAM hg38 aabf00cc-4646-4c76-ba85-e71a9918937b storage1 C3N-00704.WGS.N.hg38 C3N-00704 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2d7bb33-913f-4649-818d-ea17dec28c73/577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 112962603484 BAM hg38 e2d7bb33-913f-4649-818d-ea17dec28c73 storage1 C3N-00704.WGS.T.hg38 C3N-00704 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96826950-6ed1-4823-9139-a25ac9973c6b/518bf809-26b7-44df-8594-e9d18ed203b8_gdc_realn.bam 117895174497 BAM hg38 96826950-6ed1-4823-9139-a25ac9973c6b storage1 C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88b83619-2e12-43a4-b078-9aa7dab5c404/8eb73313-d0eb-434a-a08b-3b8c9e4f8bde.rna_seq.genomic.gdc_realn.bam 8852010459 BAM hg38 88b83619-2e12-43a4-b078-9aa7dab5c404 storage1 @@ -1739,6 +1986,8 @@ C3N-00834.WGS.N.hg38 C3N-00834 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-00834.WGS.T.hg38 C3N-00834 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8059f369-bc8d-4a49-8701-4e266fa9a995/c913633d-4498-4e7c-aa72-c7bd0c2924fa_gdc_realn.bam 87478246080 BAM hg38 8059f369-bc8d-4a49-8701-4e266fa9a995 storage1 C3N-00836.WGS.N.hg38 C3N-00836 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09220dab-d4b0-4d15-bb22-a222b5d0abc1/fa4f35a1-cb0a-4d92-8631-4f675161b355_gdc_realn.bam 90862219577 BAM hg38 09220dab-d4b0-4d15-bb22-a222b5d0abc1 storage1 C3N-00836.WGS.T.hg38 C3N-00836 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b118458-2f1c-42f4-9ae0-17485da8782a/08fed8ee-199e-4b11-bcee-2b3b2b320ae9_gdc_realn.bam 89213250637 BAM hg38 3b118458-2f1c-42f4-9ae0-17485da8782a storage1 +C3N-00839.WGS.N.hg38 C3N-00839 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2afa22d9-5b15-4eee-91e4-b9b52787d940/516dbdf8-2b5a-4bb3-ae4e-95c4d3700e6c_gdc_realn.bam 139953537186 BAM hg38 2afa22d9-5b15-4eee-91e4-b9b52787d940 storage1 +C3N-00839.WGS.T.hg38 C3N-00839 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82a9e684-fe5b-41eb-9b5a-6ae7216cf20e/b8a43596-790d-461a-bc55-3c2bf876b979_gdc_realn.bam 105484587913 BAM hg38 82a9e684-fe5b-41eb-9b5a-6ae7216cf20e storage1 C3N-00846.WGS.N.hg38 C3N-00846 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88ab56f7-89d2-4247-86c8-e168f53c54b6/50ca401a-353c-4ac6-b5b1-10ef34bcc849_gdc_realn.bam 134628683555 BAM hg38 88ab56f7-89d2-4247-86c8-e168f53c54b6 storage1 C3N-00846.WGS.T.hg38 C3N-00846 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64de0f5f-e915-4475-9510-7059a8648148/e0c7b843-344c-45b6-bdf8-824f62f9fd52_gdc_realn.bam 99427725960 BAM hg38 64de0f5f-e915-4475-9510-7059a8648148 storage1 C3N-00847.WGS.N.hg38 C3N-00847 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbdad251-d8da-4651-9e23-ab9aa7ebdfca/9333c264-b25a-4ad9-8cbc-60d4d961a1e4_gdc_realn.bam 93972603059 BAM hg38 fbdad251-d8da-4651-9e23-ab9aa7ebdfca storage1 @@ -1786,6 +2035,8 @@ C3N-00957.WGS.T.DEEP_roKgy2.hg38 C3N-00957 PDA WGS tumor /storage1/fs1/m.wyczalk C3N-00959.WGS.A.hg38 C3N-00959 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/670ca876-71b8-42c6-91a6-84bcfd4c86cd/e57ae3c6-fdc3-428f-a274-35a0ae813f7b_wgs_gdc_realn.bam 85457569017 BAM hg38 670ca876-71b8-42c6-91a6-84bcfd4c86cd storage1 C3N-00959.WGS.N.hg38 C3N-00959 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86018d06-3354-4a51-8200-591a3071350a/8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 112542448845 BAM hg38 86018d06-3354-4a51-8200-591a3071350a storage1 C3N-00959.WGS.T.hg38 C3N-00959 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe620bed-1b17-40d7-87cb-1012d86518b2/ab74ba2c-c2fc-4dc1-9d4b-943680f7b486_gdc_realn.bam 100578487992 BAM hg38 fe620bed-1b17-40d7-87cb-1012d86518b2 storage1 +C3N-01001.WGS.N.hg38 C3N-01001 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01c15e02-acbc-49f1-b489-5e171548b0e8/d02e9e05-81d1-4fa8-a227-ca3cec105ba9_gdc_realn.bam 108834310807 BAM hg38 01c15e02-acbc-49f1-b489-5e171548b0e8 storage1 +C3N-01001.WGS.T.hg38 C3N-01001 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7d46687a-97ce-4fe4-adb0-3da1045e32d4/9b7b8a64-7bb9-4c81-ac55-726b9577429a_gdc_realn.bam 125890075212 BAM hg38 7d46687a-97ce-4fe4-adb0-3da1045e32d4 storage1 C3N-01003.WGS.N.hg38 C3N-01003 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f7ee25ab-e8b9-411d-8a85-30a3e162ce4b/51eb5a05-ad42-43dc-90a4-3ff7bb659a08_gdc_realn.bam 99991837066 BAM hg38 f7ee25ab-e8b9-411d-8a85-30a3e162ce4b storage1 C3N-01003.WGS.T.hg38 C3N-01003 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3c5f8e3-f323-4657-baab-5a0af7cbc471/b3f94939-b025-462f-8fff-ecbcd2a7d970_gdc_realn.bam 110019715494 BAM hg38 c3c5f8e3-f323-4657-baab-5a0af7cbc471 storage1 C3N-01007.WGS.N.hg38 C3N-01007 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec2f5ff4-8c4b-4612-8f8e-6e021b101ac0/5a790ee0-6b08-46bf-9caa-8e1fffea7565_wgs_gdc_realn.bam 86050153894 BAM hg38 ec2f5ff4-8c4b-4612-8f8e-6e021b101ac0 storage1 @@ -1804,9 +2055,18 @@ C3N-01012.WGS.T.hg38 C3N-01012 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active C3N-01016.WGS.A.hg38 C3N-01016 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa218704-43eb-41b4-a247-b808f483a7a0/a6ab0136-7ec4-4ec9-9f29-415c78515d9c_wgs_gdc_realn.bam 89760042482 BAM hg38 fa218704-43eb-41b4-a247-b808f483a7a0 storage1 C3N-01016.WGS.N.hg38 C3N-01016 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57eee6a7-effa-4a86-953f-77dac8c309a5/5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 97369674939 BAM hg38 57eee6a7-effa-4a86-953f-77dac8c309a5 storage1 C3N-01016.WGS.T.hg38 C3N-01016 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fec09b12-5744-4e5d-841c-7cda0c5990d3/b7314944-d4d1-4f1c-9359-5c631f7c5041_gdc_realn.bam 98232882829 BAM hg38 fec09b12-5744-4e5d-841c-7cda0c5990d3 storage1 +C3N-01017.WGS.A.hg38 C3N-01017 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb7d814e-3b60-46db-9563-6f4847abca7c/77ab1337-2692-4476-bb3f-0b72a3a80b95_wgs_gdc_realn.bam 94421567698 BAM hg38 cb7d814e-3b60-46db-9563-6f4847abca7c storage1 +C3N-01017.WGS.N.hg38 C3N-01017 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a6de050-ae97-46ce-af90-687cab44d66d/f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 113216154553 BAM hg38 0a6de050-ae97-46ce-af90-687cab44d66d storage1 +C3N-01017.WGS.T.hg38 C3N-01017 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7696b433-05b6-497f-b513-f1790149787d/e4f28c38-427f-4133-9424-10f35a261de4_gdc_realn.bam 112034013327 BAM hg38 7696b433-05b6-497f-b513-f1790149787d storage1 +C3N-01018.WGS.A.hg38 C3N-01018 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/219aa7fc-a48b-4a77-8d08-b35109a33e20/159fc77a-455a-46de-9c44-faa86e646fc2_wgs_gdc_realn.bam 91926512838 BAM hg38 219aa7fc-a48b-4a77-8d08-b35109a33e20 storage1 +C3N-01018.WGS.N.hg38 C3N-01018 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f7a0c9b-8708-4f8f-8de2-1ea3a7a6b13a/32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wgs_gdc_realn.bam 94743426427 BAM hg38 4f7a0c9b-8708-4f8f-8de2-1ea3a7a6b13a storage1 +C3N-01018.WGS.T.hg38 C3N-01018 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05fe41a8-401b-47a2-82be-b7b9420a2671/267cd1b6-4e5c-4cc7-9909-d0a3a7132719_wgs_gdc_realn.bam 96362628243 BAM hg38 05fe41a8-401b-47a2-82be-b7b9420a2671 storage1 C3N-01019.WGS.A.hg38 C3N-01019 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/344949ad-1a00-4dfa-8a50-45f8dee29ada/90b0c8c6-9e8d-4015-8c68-3a96adee4184_wgs_gdc_realn.bam 95671822675 BAM hg38 344949ad-1a00-4dfa-8a50-45f8dee29ada storage1 C3N-01019.WGS.N.hg38 C3N-01019 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd1abc83-764b-4f89-abf0-b43b4f928871/2fd642b2-49e4-47ed-aa09-e55d1f01ec59_wgs_gdc_realn.bam 90294215581 BAM hg38 cd1abc83-764b-4f89-abf0-b43b4f928871 storage1 C3N-01019.WGS.T.hg38 C3N-01019 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1bc2695-c010-4142-91f0-dc856496588b/bf84a979-446c-47ae-98e4-c4bbb443e928_wgs_gdc_realn.bam 97078263484 BAM hg38 e1bc2695-c010-4142-91f0-dc856496588b storage1 +C3N-01020.WGS.A.hg38 C3N-01020 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae17f21e-13a6-4dd1-a78b-7d29c61e0e25/29543f7c-4933-4205-8775-181c20696cf6_wgs_gdc_realn.bam 86355184819 BAM hg38 ae17f21e-13a6-4dd1-a78b-7d29c61e0e25 storage1 +C3N-01020.WGS.N.hg38 C3N-01020 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c748ffc-76da-402c-ac35-3eacdffed03e/3a7b901e-d06f-42da-9914-eef74275e002_wgs_gdc_realn.bam 87425000059 BAM hg38 7c748ffc-76da-402c-ac35-3eacdffed03e storage1 +C3N-01020.WGS.T.hg38 C3N-01020 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/773a7c69-6ed0-4b7b-9094-8759381c5a11/61e19b63-df4f-459e-9ca0-97e943d855d9_wgs_gdc_realn.bam 88537581155 BAM hg38 773a7c69-6ed0-4b7b-9094-8759381c5a11 storage1 C3N-01021.WGS.A.hg38 C3N-01021 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eecd1619-e464-47da-8c02-25a431640223/d7d51562-4b03-475f-957a-18bf0fe7ffa5_wgs_gdc_realn.bam 84144213609 BAM hg38 eecd1619-e464-47da-8c02-25a431640223 storage1 C3N-01021.WGS.N.hg38 C3N-01021 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10064d24-13b8-4350-81c2-27d5e1448f2d/fc900e46-4670-4fd9-ab78-ce18452fcb32_wgs_gdc_realn.bam 114065162253 BAM hg38 10064d24-13b8-4350-81c2-27d5e1448f2d storage1 C3N-01021.WGS.T.hg38 C3N-01021 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/004c6292-6780-46ca-8897-2b676a0542a5/6e8c1ae0-ff66-4df1-834d-ce7788106d40_wgs_gdc_realn.bam 88695661530 BAM hg38 004c6292-6780-46ca-8897-2b676a0542a5 storage1 @@ -1819,6 +2079,12 @@ C3N-01023.WGS.T.hg38 C3N-01023 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3N-01024.WGS.A.hg38 C3N-01024 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/feb04b17-09ba-4698-9198-047c3d2a6831/b5e049c4-a147-488f-8545-70c5ade90d94_wgs_gdc_realn.bam 109407714464 BAM hg38 feb04b17-09ba-4698-9198-047c3d2a6831 storage1 C3N-01024.WGS.N.hg38 C3N-01024 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96403b4d-7d4d-4740-9cf9-2c544882f6a5/56936176-1fa4-4fab-8558-c250f52613e2_wgs_gdc_realn.bam 90661453856 BAM hg38 96403b4d-7d4d-4740-9cf9-2c544882f6a5 storage1 C3N-01024.WGS.T.hg38 C3N-01024 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75c882b4-a172-4412-aa44-26df17479645/b054d196-6194-469f-aa49-62037b18d803_wgs_gdc_realn.bam 105547429040 BAM hg38 75c882b4-a172-4412-aa44-26df17479645 storage1 +C3N-01025.WGS.A.hg38 C3N-01025 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e852138c-e1c8-423e-8908-3ab8029a7dd4/8fec352a-9f29-4192-9cf7-4e168121d65a_wgs_gdc_realn.bam 85351032567 BAM hg38 e852138c-e1c8-423e-8908-3ab8029a7dd4 storage1 +C3N-01025.WGS.N.hg38 C3N-01025 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2aa47188-a36b-436f-9fa8-38fa65d43168/deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 106684041857 BAM hg38 2aa47188-a36b-436f-9fa8-38fa65d43168 storage1 +C3N-01025.WGS.T.hg38 C3N-01025 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/235fdf79-7fc1-4173-82dc-406ef59a9f31/ec4f4827-a41c-44ff-b5d8-dfaa16db54a3_gdc_realn.bam 97633619562 BAM hg38 235fdf79-7fc1-4173-82dc-406ef59a9f31 storage1 +C3N-01028.WGS.A.hg38 C3N-01028 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f7b1e37-c50a-42a8-9ed0-8f387389e9e9/559f5fdf-bd53-4226-8288-4cf99d291e00_wgs_gdc_realn.bam 82457230957 BAM hg38 1f7b1e37-c50a-42a8-9ed0-8f387389e9e9 storage1 +C3N-01028.WGS.N.hg38 C3N-01028 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea1eecac-2f2c-4e5a-9b16-d3b0d7c8a7e6/b5b5f651-2f29-457b-b99c-9b08ba7238da_wgs_gdc_realn.bam 89663607689 BAM hg38 ea1eecac-2f2c-4e5a-9b16-d3b0d7c8a7e6 storage1 +C3N-01028.WGS.T.hg38 C3N-01028 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddf4d672-37ad-4652-ad3d-299170bcbd9e/5447f151-e584-4e44-97c2-781182eb562a_wgs_gdc_realn.bam 89430487483 BAM hg38 ddf4d672-37ad-4652-ad3d-299170bcbd9e storage1 C3N-01030.WGS.A.hg38 C3N-01030 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b6c4724-11db-44b3-94df-39520177da76/b8952bf8-d01a-4ea8-bb07-957e3cc6fd55_wgs_gdc_realn.bam 77520063993 BAM hg38 4b6c4724-11db-44b3-94df-39520177da76 storage1 C3N-01030.WGS.N.hg38 C3N-01030 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7772f460-5f6f-4696-ac37-33d05f47a1ae/8e390124-ff80-417f-b8c3-a611f6e4fcbe_wgs_gdc_realn.bam 99833243257 BAM hg38 7772f460-5f6f-4696-ac37-33d05f47a1ae storage1 C3N-01030.WGS.T.hg38 C3N-01030 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3051cae9-adf3-4350-a963-6e9a108e22a9/d75c8fba-a99e-4930-b9fe-514d1e6db377_wgs_gdc_realn.bam 88048291874 BAM hg38 3051cae9-adf3-4350-a963-6e9a108e22a9 storage1 @@ -1891,8 +2157,17 @@ C3N-01180.WGS.N.hg38 C3N-01180 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-01180.WGS.T.hg38 C3N-01180 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dcc1020-894b-4352-826d-0da39a09de2b/5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 99294390661 BAM hg38 1dcc1020-894b-4352-826d-0da39a09de2b storage1 C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e0cac4e-ae60-4a00-a3f3-97193372485d/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.chimeric.gdc_realn.bam 53111853 BAM hg38 0e0cac4e-ae60-4a00-a3f3-97193372485d storage1 C3N-01192.RNA-Seq.transcriptome.T.hg38 C3N-01192 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b344fe26-5979-4b53-8d6a-1e13540fb7dd/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.transcriptome.gdc_realn.bam 10892346070 BAM hg38 b344fe26-5979-4b53-8d6a-1e13540fb7dd storage1 +C3N-01192.WGS.N.hg38 C3N-01192 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff0b98e8-93b8-4492-91ee-259293a5571a/300522b0-ac2f-4ec7-a5ae-cd55519df19c_wgs_gdc_realn.bam 102084073930 BAM hg38 ff0b98e8-93b8-4492-91ee-259293a5571a storage1 +C3N-01192.WGS.T.hg38 C3N-01192 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71abf089-0d4a-4f62-9691-f10844c265d1/b4dc9536-147b-46cf-b704-dc9244cb3980_wgs_gdc_realn.bam 99753558206 BAM hg38 71abf089-0d4a-4f62-9691-f10844c265d1 storage1 +C3N-01194.WGS.A.hg38 C3N-01194 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79b4667f-a822-4230-a18d-e659697f618f/5d4a1c91-6ea9-4957-bf09-2e47110b99c6_wgs_gdc_realn.bam 75933605428 BAM hg38 79b4667f-a822-4230-a18d-e659697f618f storage1 +C3N-01194.WGS.N.hg38 C3N-01194 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fab46b3d-6bde-43a2-8633-1eed8864948d/8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 115706074766 BAM hg38 fab46b3d-6bde-43a2-8633-1eed8864948d storage1 +C3N-01194.WGS.T.hg38 C3N-01194 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d178dd49-5ac5-421b-9653-021451682f46/7a1a881e-51c3-46c4-bf78-fffcb8fde6b8_gdc_realn.bam 93685031070 BAM hg38 d178dd49-5ac5-421b-9653-021451682f46 storage1 C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46f708f2-3985-442a-a64e-e66d5e595295/1a4dcfe0-7950-4957-ba2d-a52e74c3eac7.rna_seq.chimeric.gdc_realn.bam 49332849 BAM hg38 46f708f2-3985-442a-a64e-e66d5e595295 storage1 C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0735aac-d346-43ba-81c1-4054b7c906c3/1a4dcfe0-7950-4957-ba2d-a52e74c3eac7.rna_seq.transcriptome.gdc_realn.bam 7190041368 BAM hg38 a0735aac-d346-43ba-81c1-4054b7c906c3 storage1 +C3N-01196.WGS.N.hg38 C3N-01196 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1f1c0db8-a938-444a-a1b7-d92ead28e401/2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 109344171761 BAM hg38 1f1c0db8-a938-444a-a1b7-d92ead28e401 storage1 +C3N-01196.WGS.T.hg38 C3N-01196 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27/f5139e18-95b6-4359-8018-f511b3cdbac5_gdc_realn.bam 102911297394 BAM hg38 478b3dc7-7df2-4ce1-81b7-1dcfd9bc6f27 storage1 +C3N-01197.WGS.N.hg38 C3N-01197 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d103cd5-b6ba-499c-b86d-ee90e7722972/ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 101210139062 BAM hg38 8d103cd5-b6ba-499c-b86d-ee90e7722972 storage1 +C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69bc2a10-0aee-46d4-8974-e138bea74760/8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 119236219494 BAM hg38 69bc2a10-0aee-46d4-8974-e138bea74760 storage1 C3N-01200.WGS.A.hg38 C3N-01200 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b982ca99-b3d8-4021-8dd3-3a727eae6f22/6197fa8a-3d40-4e44-a89c-afcc3ad4d564_wgs_gdc_realn.bam 78460551401 BAM hg38 b982ca99-b3d8-4021-8dd3-3a727eae6f22 storage1 C3N-01200.WGS.N.hg38 C3N-01200 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f09fc36d-1f58-4903-8bcb-6476a64477ce/985b6a8c-9bee-4c84-beb6-289937143d49_gdc_realn.bam 102398962395 BAM hg38 f09fc36d-1f58-4903-8bcb-6476a64477ce storage1 C3N-01200.WGS.T.HET_xBGLLn.hg38 C3N-01200 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/349d8502-6f99-41da-8e96-833a0f288bdf/b7a42d2c-dcf9-4a38-b408-c0ed23354171_wgs_gdc_realn.bam 96507509265 BAM hg38 349d8502-6f99-41da-8e96-833a0f288bdf storage1 @@ -1928,6 +2203,8 @@ C3N-01267.WGS.N.hg38 C3N-01267 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-01267.WGS.T.hg38 C3N-01267 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a16e63f-e0cb-4ff2-bc69-f077232f3b2c/441ce217-806a-46cc-84fd-6391b0ba2d82_gdc_realn.bam 98922759749 BAM hg38 6a16e63f-e0cb-4ff2-bc69-f077232f3b2c storage1 C3N-01334.RNA-Seq.chimeric.T.hg38 C3N-01334 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bbda1f0b-343f-4170-a947-46dfb18fd158/5df0c6c8-8eba-4338-8d89-b17e7850409e.rna_seq.chimeric.gdc_realn.bam 128585819 BAM hg38 bbda1f0b-343f-4170-a947-46dfb18fd158 storage1 C3N-01334.RNA-Seq.transcriptome.T.hg38 C3N-01334 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/876554f1-7d5f-47d8-9f50-ac4d65f5facc/5df0c6c8-8eba-4338-8d89-b17e7850409e.rna_seq.transcriptome.gdc_realn.bam 8008207859 BAM hg38 876554f1-7d5f-47d8-9f50-ac4d65f5facc storage1 +C3N-01334.WGS.N.hg38 C3N-01334 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5980d118-12c4-440c-ba3d-3edfa259658a/1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wgs_gdc_realn.bam 90333471413 BAM hg38 5980d118-12c4-440c-ba3d-3edfa259658a storage1 +C3N-01334.WGS.T.hg38 C3N-01334 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d674d610-4fa5-4838-a145-4f60c956c43d/db1b4053-ac2a-4da7-b360-488978fbf6c4_wgs_gdc_realn.bam 92894519288 BAM hg38 d674d610-4fa5-4838-a145-4f60c956c43d storage1 C3N-01337.WGS.A.hg38 C3N-01337 HNSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7232386e-c114-4ca2-ba4c-3a102becbb45/ccd05ad6-d909-4da7-8f5f-5326e0a6db42_wgs_gdc_realn.bam 85357987865 BAM hg38 7232386e-c114-4ca2-ba4c-3a102becbb45 storage1 C3N-01337.WGS.N.hg38 C3N-01337 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60c95aca-9e6b-45a5-9e5a-78d183ec859a/ff8d9b73-dfdd-4de7-b9e4-96176aa60f7d_wgs_gdc_realn.bam 87234854570 BAM hg38 60c95aca-9e6b-45a5-9e5a-78d183ec859a storage1 C3N-01337.WGS.T.hg38 C3N-01337 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f923d70c-5ce2-47a0-8839-dcacb1ebe529/2da6fefd-4842-47be-9503-e87c867fb1dc_wgs_gdc_realn.bam 100634389854 BAM hg38 f923d70c-5ce2-47a0-8839-dcacb1ebe529 storage1 @@ -1954,14 +2231,24 @@ C3N-01361.WGS.N.hg38 C3N-01361 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-01361.WGS.T.hg38 C3N-01361 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/513087cd-d722-4195-b1cd-1f64546057a8/fbd6a4c7-253b-4895-83a8-349aae8f0273_gdc_realn.bam 118619538470 BAM hg38 513087cd-d722-4195-b1cd-1f64546057a8 storage1 C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a99193bc-1fbe-425f-a300-cde38994c3f9/a0e8a67a-dbd0-48f5-909b-3be648f0b277.rna_seq.chimeric.gdc_realn.bam 31307927 BAM hg38 a99193bc-1fbe-425f-a300-cde38994c3f9 storage1 C3N-01364.RNA-Seq.transcriptome.T.hg38 C3N-01364 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9c26957-61d6-40d8-b44a-babbb4768b13/a0e8a67a-dbd0-48f5-909b-3be648f0b277.rna_seq.transcriptome.gdc_realn.bam 9148519699 BAM hg38 c9c26957-61d6-40d8-b44a-babbb4768b13 storage1 +C3N-01364.WGS.N.hg38 C3N-01364 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e78972e-d40d-49c7-9dea-80a2ae300520/49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wgs_gdc_realn.bam 90233355921 BAM hg38 2e78972e-d40d-49c7-9dea-80a2ae300520 storage1 +C3N-01364.WGS.T.hg38 C3N-01364 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44b98b50-87ea-491b-bd05-5fa6650a8350/5f6180da-9f43-41a4-ac5b-816dd3297285_wgs_gdc_realn.bam 91034187503 BAM hg38 44b98b50-87ea-491b-bd05-5fa6650a8350 storage1 C3N-01366.RNA-Seq.chimeric.T.hg38 C3N-01366 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f312c43-28e4-4be1-a580-a617e7ab9ffc/825b7a02-a331-4c5b-9801-1e1e7c8901ec.rna_seq.chimeric.gdc_realn.bam 26760419 BAM hg38 6f312c43-28e4-4be1-a580-a617e7ab9ffc storage1 C3N-01366.RNA-Seq.transcriptome.T.hg38 C3N-01366 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f03d2fff-5440-4eb5-b2d5-941cd38e48eb/825b7a02-a331-4c5b-9801-1e1e7c8901ec.rna_seq.transcriptome.gdc_realn.bam 9691013755 BAM hg38 f03d2fff-5440-4eb5-b2d5-941cd38e48eb storage1 +C3N-01366.WGS.N.hg38 C3N-01366 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64768550-ac2f-4b5c-84ea-37014a8c1af4/dc744f87-3e3b-4eb1-b7de-ab743ef63880_wgs_gdc_realn.bam 101811273944 BAM hg38 64768550-ac2f-4b5c-84ea-37014a8c1af4 storage1 +C3N-01366.WGS.T.hg38 C3N-01366 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aedd51d0-330d-4780-b6fc-9ba566274980/bf7d406f-320d-4fc8-ba31-5d5779b11a18_wgs_gdc_realn.bam 104729974826 BAM hg38 aedd51d0-330d-4780-b6fc-9ba566274980 storage1 C3N-01367.RNA-Seq.chimeric.T.hg38 C3N-01367 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ff584c5-7b0c-4bc7-ad98-0e20eec1d69b/1ae50000-ca3d-4923-a7ea-f5ed3afdd5dd.rna_seq.chimeric.gdc_realn.bam 30847899 BAM hg38 2ff584c5-7b0c-4bc7-ad98-0e20eec1d69b storage1 C3N-01367.RNA-Seq.transcriptome.T.hg38 C3N-01367 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29cc5497-7cd4-4ada-b3a3-db6b5cd74ac7/1ae50000-ca3d-4923-a7ea-f5ed3afdd5dd.rna_seq.transcriptome.gdc_realn.bam 8120483710 BAM hg38 29cc5497-7cd4-4ada-b3a3-db6b5cd74ac7 storage1 +C3N-01367.WGS.N.hg38 C3N-01367 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd8825ce-40b7-4842-b8f5-227d168734d8/48c74137-31a5-45dc-a63f-026614b79af0_wgs_gdc_realn.bam 116424006952 BAM hg38 cd8825ce-40b7-4842-b8f5-227d168734d8 storage1 +C3N-01367.WGS.T.hg38 C3N-01367 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc340836-b124-4f46-b854-676386877c08/cf8b37ba-cabe-4e3b-9c0d-086725757e17_wgs_gdc_realn.bam 86693276819 BAM hg38 fc340836-b124-4f46-b854-676386877c08 storage1 C3N-01368.RNA-Seq.chimeric.T.hg38 C3N-01368 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21ab4772-06e9-4fca-b1ac-0df79814ba2e/cb31907f-5c8e-44e6-995e-ac2e1ee72dd0.rna_seq.chimeric.gdc_realn.bam 41738483 BAM hg38 21ab4772-06e9-4fca-b1ac-0df79814ba2e storage1 C3N-01368.RNA-Seq.transcriptome.T.hg38 C3N-01368 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa65181c-eeb9-4f7a-8a5a-2ae7c2251ecf/cb31907f-5c8e-44e6-995e-ac2e1ee72dd0.rna_seq.transcriptome.gdc_realn.bam 9251255296 BAM hg38 fa65181c-eeb9-4f7a-8a5a-2ae7c2251ecf storage1 +C3N-01368.WGS.N.hg38 C3N-01368 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac39fb69-64aa-44e4-b308-e41df3a974eb/6d5370f7-a363-4450-bf90-ade4abfee224_wgs_gdc_realn.bam 98468146967 BAM hg38 ac39fb69-64aa-44e4-b308-e41df3a974eb storage1 +C3N-01368.WGS.T.hg38 C3N-01368 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf41df48-ba05-4af3-8835-3c17bbd5236e/c2ed3978-37c5-4c6b-b61e-91ab4856698a_wgs_gdc_realn.bam 83200402994 BAM hg38 bf41df48-ba05-4af3-8835-3c17bbd5236e storage1 C3N-01369.RNA-Seq.chimeric.T.hg38 C3N-01369 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65dfe97d-b808-4523-ab4c-92cc4567e81a/413052c7-0d49-4515-be9c-75492747b3ee.rna_seq.chimeric.gdc_realn.bam 130490485 BAM hg38 65dfe97d-b808-4523-ab4c-92cc4567e81a storage1 C3N-01369.RNA-Seq.transcriptome.T.hg38 C3N-01369 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3d24fab-be98-48e5-8302-361c596ded27/413052c7-0d49-4515-be9c-75492747b3ee.rna_seq.transcriptome.gdc_realn.bam 7764716621 BAM hg38 a3d24fab-be98-48e5-8302-361c596ded27 storage1 +C3N-01369.WGS.N.hg38 C3N-01369 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/00a6c8d6-d21a-47d0-860b-af54979354bf/72e8c076-6bc4-4274-b90c-188820d472a1_wgs_gdc_realn.bam 92159766724 BAM hg38 00a6c8d6-d21a-47d0-860b-af54979354bf storage1 +C3N-01369.WGS.T.hg38 C3N-01369 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b65a532f-36d7-43e2-b46d-dc4f9d6ebade/b97f843a-68a7-430f-b277-93c55b7f4b76_wgs_gdc_realn.bam 93697537744 BAM hg38 b65a532f-36d7-43e2-b46d-dc4f9d6ebade storage1 C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08ae1a2f-7690-4442-9540-24453fcbf4da/298b81f7-eb41-43cd-a438-1c9c168ba4e4.rna_seq.genomic.gdc_realn.bam 7815912943 BAM hg38 08ae1a2f-7690-4442-9540-24453fcbf4da storage1 C3N-01375.WGS.N.hg38 C3N-01375 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74338bba-fc03-4ca2-ab99-a60e1688c9c4/70741c40-f272-4621-9043-296dbe5d6d26_gdc_realn.bam 105470647804 BAM hg38 74338bba-fc03-4ca2-ab99-a60e1688c9c4 storage1 C3N-01375.WGS.T.hg38 C3N-01375 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5357a10-f5e2-4372-ad47-71e415933515/fb705e01-bb41-414c-a9c3-f3ac72c0aa4e_wgs_gdc_realn.bam 174570967767 BAM hg38 f5357a10-f5e2-4372-ad47-71e415933515 storage1 @@ -2004,6 +2291,9 @@ C3N-01409.WGS.T.hg38 C3N-01409 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3N-01410.WGS.A.hg38 C3N-01410 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/705eb38d-04c2-4dbe-8dae-2dca8e2c32ae/72ac40bc-46e6-4e4e-9419-7e99bd8963c2_wgs_gdc_realn.bam 77199933337 BAM hg38 705eb38d-04c2-4dbe-8dae-2dca8e2c32ae storage1 C3N-01410.WGS.N.hg38 C3N-01410 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/add0603d-9625-460c-8a66-b9c81e393089/45c7d850-8bb3-4612-96c3-b0bb98f852bb_wgs_gdc_realn.bam 109312711989 BAM hg38 add0603d-9625-460c-8a66-b9c81e393089 storage1 C3N-01410.WGS.T.hg38 C3N-01410 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b1ff167-0d26-42b8-8608-b2e7de1a36d3/7c2971d4-40a3-41cd-92fd-3a771f40870f_wgs_gdc_realn.bam 89828957137 BAM hg38 6b1ff167-0d26-42b8-8608-b2e7de1a36d3 storage1 +C3N-01411.WGS.A.hg38 C3N-01411 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64daf356-b1a2-43f6-8b14-9f302664454b/809c752d-b093-4490-8cf6-06ce2f158553_wgs_gdc_realn.bam 93533049669 BAM hg38 64daf356-b1a2-43f6-8b14-9f302664454b storage1 +C3N-01411.WGS.N.hg38 C3N-01411 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5576da5-a68b-4802-aa1d-48b3864d3b62/b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wgs_gdc_realn.bam 93048772168 BAM hg38 b5576da5-a68b-4802-aa1d-48b3864d3b62 storage1 +C3N-01411.WGS.T.hg38 C3N-01411 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e17997d-8c52-4771-9b26-4803f9c1c53f/61b7c6e3-19c0-4e15-98ea-980978ff2e95_wgs_gdc_realn.bam 101426776439 BAM hg38 5e17997d-8c52-4771-9b26-4803f9c1c53f storage1 C3N-01413.WGS.A.hg38 C3N-01413 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79bf8871-4631-453e-bdc2-9c6d9fc212cc/a3b2cfbe-fced-4899-9451-5d48b5ea312b_wgs_gdc_realn.bam 95809259340 BAM hg38 79bf8871-4631-453e-bdc2-9c6d9fc212cc storage1 C3N-01413.WGS.N.hg38 C3N-01413 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee6fdbf4-69c1-4f29-88c4-b79d1cfdfa35/87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wgs_gdc_realn.bam 103029558776 BAM hg38 ee6fdbf4-69c1-4f29-88c4-b79d1cfdfa35 storage1 C3N-01413.WGS.T.hg38 C3N-01413 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c82f940-08fc-48be-a64e-3b6b34455d43/81f9ede6-25c7-4ade-85de-a5cbeff94b5a_wgs_gdc_realn.bam 98248389867 BAM hg38 0c82f940-08fc-48be-a64e-3b6b34455d43 storage1 @@ -2033,14 +2323,22 @@ C3N-01502.WGS.N.hg38 C3N-01502 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-01502.WGS.T.DEEP_rp63A6.hg38 C3N-01502 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18992ff2-d652-4450-a037-d477d50b7245/8c9b3147-4bf6-42f3-838e-b257eaa4b898_gdc_realn.bam 105875055640 BAM hg38 18992ff2-d652-4450-a037-d477d50b7245 storage1 C3N-01505.RNA-Seq.chimeric.T.hg38 C3N-01505 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/60a0f02c-0b90-49c1-936e-9ca993d66268/a4998e9e-e3f9-4ba3-9cfd-fd3f67f68382.rna_seq.chimeric.gdc_realn.bam 43948141 BAM hg38 60a0f02c-0b90-49c1-936e-9ca993d66268 storage1 C3N-01505.RNA-Seq.transcriptome.T.hg38 C3N-01505 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8c9d3a0d-f995-4a56-8e5d-c148e72ec95a/a4998e9e-e3f9-4ba3-9cfd-fd3f67f68382.rna_seq.transcriptome.gdc_realn.bam 9872289243 BAM hg38 8c9d3a0d-f995-4a56-8e5d-c148e72ec95a storage1 +C3N-01505.WGS.N.hg38 C3N-01505 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c49660d-60b1-40a4-9669-3aabc6c5ced2/087bdb48-d63e-46d0-96d1-1915276d5fb6_wgs_gdc_realn.bam 103578718945 BAM hg38 4c49660d-60b1-40a4-9669-3aabc6c5ced2 storage1 +C3N-01505.WGS.T.hg38 C3N-01505 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46030a49-3f35-442f-865c-2d7f298344ee/c51f48fb-4a71-430b-8492-cecd49c158d4_wgs_gdc_realn.bam 112049041549 BAM hg38 46030a49-3f35-442f-865c-2d7f298344ee storage1 C3N-01510.WGS.N.hg38 C3N-01510 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ef81d6b-2d4a-4ed8-960b-eea9cf8c3598/f8e5df28-e72a-43d1-867f-2774935b9d1b_gdc_realn.bam 91153684077 BAM hg38 5ef81d6b-2d4a-4ed8-960b-eea9cf8c3598 storage1 C3N-01510.WGS.T.hg38 C3N-01510 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f8c5708f-f692-4381-92ea-4dcf5a970d14/6071b625-57fb-4113-9926-83e265a78d28_gdc_realn.bam 92530012976 BAM hg38 f8c5708f-f692-4381-92ea-4dcf5a970d14 storage1 C3N-01515.RNA-Seq.chimeric.T.hg38 C3N-01515 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68beeac2-9997-4816-bb97-729a15becf4d/3eca3ff3-8621-4e8b-9a74-074e23c5f755.rna_seq.chimeric.gdc_realn.bam 44502229 BAM hg38 68beeac2-9997-4816-bb97-729a15becf4d storage1 C3N-01515.RNA-Seq.transcriptome.T.hg38 C3N-01515 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ef0e5e7-ffa5-47c6-9419-11fc35721697/3eca3ff3-8621-4e8b-9a74-074e23c5f755.rna_seq.transcriptome.gdc_realn.bam 9024936082 BAM hg38 8ef0e5e7-ffa5-47c6-9419-11fc35721697 storage1 +C3N-01515.WGS.N.ADNA_kPL1jE.hg38 C3N-01515 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f97f390b-0bb3-499c-b6bd-00b1afce849b/474dfea4-f2db-44d5-9f00-98c85f07f20b_wgs_gdc_realn.bam 75868489857 BAM hg38 f97f390b-0bb3-499c-b6bd-00b1afce849b storage1 +C3N-01515.WGS.T.hg38 C3N-01515 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a677c0b-d4b6-48c3-8cb1-f0450487c8e1/d4205a17-5d31-4f86-9a43-4631df1263ab_wgs_gdc_realn.bam 94688322512 BAM hg38 0a677c0b-d4b6-48c3-8cb1-f0450487c8e1 storage1 C3N-01517.RNA-Seq.chimeric.T.hg38 C3N-01517 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c669f616-6df5-4d08-8a18-ec83b0d7e5b3/f36cbc5e-efc0-4f59-9297-72aacc496954.rna_seq.chimeric.gdc_realn.bam 27442692 BAM hg38 c669f616-6df5-4d08-8a18-ec83b0d7e5b3 storage1 C3N-01517.RNA-Seq.transcriptome.T.hg38 C3N-01517 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e8bf8fb-c97e-410d-83df-69e7aba90292/f36cbc5e-efc0-4f59-9297-72aacc496954.rna_seq.transcriptome.gdc_realn.bam 8386397007 BAM hg38 6e8bf8fb-c97e-410d-83df-69e7aba90292 storage1 +C3N-01517.WGS.N.hg38 C3N-01517 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/99114da3-f483-48a9-bdad-c734fa942f52/c5532f02-56c1-4f58-8b21-238146948cf5_wgs_gdc_realn.bam 95893216700 BAM hg38 99114da3-f483-48a9-bdad-c734fa942f52 storage1 +C3N-01517.WGS.T.hg38 C3N-01517 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/693f85ac-183b-4e68-817e-e2c16c0b874b/17b3d2e1-0d12-438c-88ec-a8e7acf2f565_wgs_gdc_realn.bam 77834799761 BAM hg38 693f85ac-183b-4e68-817e-e2c16c0b874b storage1 C3N-01518.RNA-Seq.chimeric.T.hg38 C3N-01518 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eca6f561-422b-4fb2-9406-72dc4c61a1c1/2b172463-876d-4f5c-abdf-136d461af026.rna_seq.chimeric.gdc_realn.bam 35670126 BAM hg38 eca6f561-422b-4fb2-9406-72dc4c61a1c1 storage1 C3N-01518.RNA-Seq.transcriptome.T.hg38 C3N-01518 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b436fbc0-e822-4ec9-94f0-19d4fa5cfef9/2b172463-876d-4f5c-abdf-136d461af026.rna_seq.transcriptome.gdc_realn.bam 10536762091 BAM hg38 b436fbc0-e822-4ec9-94f0-19d4fa5cfef9 storage1 +C3N-01518.WGS.N.hg38 C3N-01518 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94e28d29-60d0-4731-9cc1-a406c71c384d/c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wgs_gdc_realn.bam 90499823103 BAM hg38 94e28d29-60d0-4731-9cc1-a406c71c384d storage1 +C3N-01518.WGS.T.hg38 C3N-01518 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254d09e0-182a-492d-934c-764c730d57a8/9ea35a6a-671b-47cc-95fa-53b5f461bc11_wgs_gdc_realn.bam 93619406656 BAM hg38 254d09e0-182a-492d-934c-764c730d57a8 storage1 C3N-01520.WGS.N.hg38 C3N-01520 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/021c018b-52e5-4d30-86e0-a0758b6eb859/22d8111e-ed85-442f-a8ff-2bc44792e155_gdc_realn.bam 91255036552 BAM hg38 021c018b-52e5-4d30-86e0-a0758b6eb859 storage1 C3N-01520.WGS.T.hg38 C3N-01520 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4f7f077-eadb-471d-8ab2-dcc8035aa087/7dea6331-0e16-40e5-b908-e9b403f848f6_gdc_realn.bam 114854625364 BAM hg38 d4f7f077-eadb-471d-8ab2-dcc8035aa087 storage1 C3N-01521.WGS.N.hg38 C3N-01521 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de536564-ee0b-471a-a157-203f5b67fb71/ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 93588727144 BAM hg38 de536564-ee0b-471a-a157-203f5b67fb71 storage1 @@ -2057,6 +2355,9 @@ C3N-01524.WGS.T.HET_rvrVo2.hg38 C3N-01524 CCRCC WGS tumor /storage1/fs1/m.wyczal C3N-01524.WGS.T.hg38 C3N-01524 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35dc1060-2818-46b3-9e62-7b105a2cef0b/5e8dd278-8b37-41fa-a827-7f417da498cd_gdc_realn.bam 100101202357 BAM hg38 35dc1060-2818-46b3-9e62-7b105a2cef0b storage1 C3N-01525.WGS.A.hg38 C3N-01525 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d282953d-5e60-457c-966c-f6233255e43f/6636828c-15a6-483d-ade1-0d697874131a_wgs_gdc_realn.bam 98443324645 BAM hg38 d282953d-5e60-457c-966c-f6233255e43f storage1 C3N-01525.WGS.N.hg38 C3N-01525 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a12a0859-002e-47f5-869f-240c8964517c/983de87d-c165-48e5-963d-970fad538bf7_wgs_gdc_realn.bam 103028139543 BAM hg38 a12a0859-002e-47f5-869f-240c8964517c storage1 +C3N-01525.WGS.T.heterogeneity.hg38 C3N-01525 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2cc1e692-94b8-45a2-a8a0-cd2c311800e6/ae065acd-6d37-4cce-9711-f1f08861cd33_wgs_gdc_realn.bam 84193932648 BAM hg38 2cc1e692-94b8-45a2-a8a0-cd2c311800e6 storage1 +C3N-01525.WGS.T.heterogeneity.hg38 C3N-01525 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/409cee47-278c-4d2e-bbd7-66e1070f883c/40060511-6d67-4a8a-a00f-9eac7a9c5162_wgs_gdc_realn.bam 94125675917 BAM hg38 409cee47-278c-4d2e-bbd7-66e1070f883c storage1 +C3N-01525.WGS.T.heterogeneity.hg38 C3N-01525 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba9bfacd-e671-4d39-92bb-aa9dbc1a306e/a0a8413c-e99e-4913-97f2-bbfd8e059eac_wgs_gdc_realn.bam 107659002653 BAM hg38 ba9bfacd-e671-4d39-92bb-aa9dbc1a306e storage1 C3N-01525.WGS.T.hg38 C3N-01525 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20b38ee9-5582-478e-8305-db960a2f88e7/8f21acac-0d82-485f-8eb5-072a6e2a866b_wgs_gdc_realn.bam 108433341840 BAM hg38 20b38ee9-5582-478e-8305-db960a2f88e7 storage1 C3N-01526.WGS.A.hg38 C3N-01526 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4db60e3-b255-434b-b7fb-5e206b67d60c/8b96444c-9b82-4d36-aaa3-09c03a0e72f3_wgs_gdc_realn.bam 88796923552 BAM hg38 a4db60e3-b255-434b-b7fb-5e206b67d60c storage1 C3N-01526.WGS.N.hg38 C3N-01526 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c10e788-99e6-44e1-96f7-7ec4f126c6b0/4b7869c4-9fe6-44b4-a679-433417679ee9_wgs_gdc_realn.bam 79847900603 BAM hg38 9c10e788-99e6-44e1-96f7-7ec4f126c6b0 storage1 @@ -2138,6 +2439,8 @@ C3N-01766.WGS.N.hg38 C3N-01766 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-01766.WGS.T.hg38 C3N-01766 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ab9be3a-77fb-4059-a8cc-713ae881d4f2/4f4f3cf5-ffc3-41e2-ab9a-3984f073b5f7_wgs_gdc_realn.bam 114104646184 BAM hg38 2ab9be3a-77fb-4059-a8cc-713ae881d4f2 storage1 C3N-01798.RNA-Seq.chimeric.T.hg38 C3N-01798 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0c7e8fc5-2626-42de-9325-39260887284e/ea4e4620-f51f-4725-bc5e-1fd95b55f774.rna_seq.chimeric.gdc_realn.bam 33452981 BAM hg38 0c7e8fc5-2626-42de-9325-39260887284e storage1 C3N-01798.RNA-Seq.transcriptome.T.hg38 C3N-01798 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca6c0ada-86f7-44ef-a0e0-a1ba0bea4972/ea4e4620-f51f-4725-bc5e-1fd95b55f774.rna_seq.transcriptome.gdc_realn.bam 9770218745 BAM hg38 ca6c0ada-86f7-44ef-a0e0-a1ba0bea4972 storage1 +C3N-01798.WGS.N.hg38 C3N-01798 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eabb8aaa-0339-4d65-828a-4c144da9442d/3fe573bd-7595-4c87-8006-ae55bfb46f6d_wgs_gdc_realn.bam 97251429797 BAM hg38 eabb8aaa-0339-4d65-828a-4c144da9442d storage1 +C3N-01798.WGS.T.hg38 C3N-01798 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b0f9efa7-91ee-4fb1-b03a-5472c3eb6957/6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wgs_gdc_realn.bam 99552056200 BAM hg38 b0f9efa7-91ee-4fb1-b03a-5472c3eb6957 storage1 C3N-01799.WGS.A.hg38 C3N-01799 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b55a4c81-a8b6-4394-a388-4ed041f5c5c1/ae11e403-c9c4-48e5-b4f0-ad6495db67cf_wgs_gdc_realn.bam 78828347607 BAM hg38 b55a4c81-a8b6-4394-a388-4ed041f5c5c1 storage1 C3N-01799.WGS.N.hg38 C3N-01799 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a01696bd-4e49-45a2-80ae-7382ea01ac28/680fb7ef-3c8a-4c38-9218-50fba1f412a1_wgs_gdc_realn.bam 87494110206 BAM hg38 a01696bd-4e49-45a2-80ae-7382ea01ac28 storage1 C3N-01799.WGS.T.hg38 C3N-01799 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ba1cb76d-87b5-4184-9c26-9f5721a2003a/51034358-c855-496f-96f4-28b8ecad1da1_wgs_gdc_realn.bam 92519009870 BAM hg38 ba1cb76d-87b5-4184-9c26-9f5721a2003a storage1 @@ -2151,18 +2454,28 @@ C3N-01808.WGS.N.hg38 C3N-01808 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-01808.WGS.T.hg38 C3N-01808 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20b73af5-f1f1-4abf-9efc-8e2adafa7500/875e2aa1-2d48-43e0-ab93-f937b70b80da_wgs_gdc_realn.bam 105734837760 BAM hg38 20b73af5-f1f1-4abf-9efc-8e2adafa7500 storage1 C3N-01814.RNA-Seq.chimeric.T.hg38 C3N-01814 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f80337ad-34be-4d83-8ae5-66171adafe49/ecc7fef4-78d0-4900-8fb0-3216b60ec1be.rna_seq.chimeric.gdc_realn.bam 35064539 BAM hg38 f80337ad-34be-4d83-8ae5-66171adafe49 storage1 C3N-01814.RNA-Seq.transcriptome.T.hg38 C3N-01814 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bfbfd59-0180-43d6-bc44-88095b79213c/ecc7fef4-78d0-4900-8fb0-3216b60ec1be.rna_seq.transcriptome.gdc_realn.bam 7765286060 BAM hg38 3bfbfd59-0180-43d6-bc44-88095b79213c storage1 +C3N-01814.WGS.N.hg38 C3N-01814 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7f7509e-0375-4e1c-a22c-b5ba92fa02cd/05e1c388-5dbe-44bd-8309-474ce6854f2a_wgs_gdc_realn.bam 76750989332 BAM hg38 e7f7509e-0375-4e1c-a22c-b5ba92fa02cd storage1 +C3N-01814.WGS.T.hg38 C3N-01814 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50aea80d-b1ca-4f31-b402-4df5b9474d46/89c71c22-206b-4f62-b69e-093b180053e2_wgs_gdc_realn.bam 87522260665 BAM hg38 50aea80d-b1ca-4f31-b402-4df5b9474d46 storage1 C3N-01815.RNA-Seq.chimeric.T.hg38 C3N-01815 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2972b66-1492-4e9c-8759-82b0627a602a/483a0839-2b99-420d-94b0-e8aa7a089737.rna_seq.chimeric.gdc_realn.bam 31126172 BAM hg38 f2972b66-1492-4e9c-8759-82b0627a602a storage1 C3N-01815.RNA-Seq.transcriptome.T.hg38 C3N-01815 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ee76b8c-9058-4d1c-9c80-9c3eb72cfd29/483a0839-2b99-420d-94b0-e8aa7a089737.rna_seq.transcriptome.gdc_realn.bam 10676308743 BAM hg38 0ee76b8c-9058-4d1c-9c80-9c3eb72cfd29 storage1 +C3N-01815.WGS.N.hg38 C3N-01815 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3871bd67-8f7f-4779-836f-244104dcfd7d/f3005199-2091-4c0e-9eb7-003fc235563b_wgs_gdc_realn.bam 85488812992 BAM hg38 3871bd67-8f7f-4779-836f-244104dcfd7d storage1 +C3N-01815.WGS.T.hg38 C3N-01815 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d597492d-0529-40e6-8ab6-b1899eca94c0/25a378f9-10f1-4864-b062-ef5d66d0c06b_wgs_gdc_realn.bam 82315464227 BAM hg38 d597492d-0529-40e6-8ab6-b1899eca94c0 storage1 C3N-01816.RNA-Seq.chimeric.T.hg38 C3N-01816 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5edeefdd-ffa4-4754-acb9-14aea1388ae4/10763311-cf6a-47d9-9777-39867a9ffd00.rna_seq.chimeric.gdc_realn.bam 29200017 BAM hg38 5edeefdd-ffa4-4754-acb9-14aea1388ae4 storage1 C3N-01816.RNA-Seq.transcriptome.T.hg38 C3N-01816 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f01eeaa-6b83-47f2-a3c8-de4d66a1d273/10763311-cf6a-47d9-9777-39867a9ffd00.rna_seq.transcriptome.gdc_realn.bam 11300019868 BAM hg38 6f01eeaa-6b83-47f2-a3c8-de4d66a1d273 storage1 +C3N-01816.WGS.N.hg38 C3N-01816 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96df1f35-0652-480a-90cf-9b4e184b5fa3/0582feca-5f76-4ca8-99a1-2183174f62a9_wgs_gdc_realn.bam 91027023070 BAM hg38 96df1f35-0652-480a-90cf-9b4e184b5fa3 storage1 +C3N-01816.WGS.T.hg38 C3N-01816 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69488b60-9ff2-4702-bc91-b13dea8a99c4/1ecfbcc3-a1a0-43e6-aa4f-97bd311b794a_wgs_gdc_realn.bam 81855660238 BAM hg38 69488b60-9ff2-4702-bc91-b13dea8a99c4 storage1 C3N-01818.RNA-Seq.chimeric.T.hg38 C3N-01818 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1637997b-b847-41f2-a426-efec01bec40c/64db4d73-f3fb-4997-93f8-71a98cd6b732.rna_seq.chimeric.gdc_realn.bam 28882035 BAM hg38 1637997b-b847-41f2-a426-efec01bec40c storage1 C3N-01818.RNA-Seq.transcriptome.T.hg38 C3N-01818 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf5f4669-aeae-49c5-b016-24bb97896647/64db4d73-f3fb-4997-93f8-71a98cd6b732.rna_seq.transcriptome.gdc_realn.bam 9000329548 BAM hg38 cf5f4669-aeae-49c5-b016-24bb97896647 storage1 +C3N-01818.WGS.N.hg38 C3N-01818 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/177f02b8-d8fc-4da9-9619-411582a25cd7/bd504223-27b1-4c70-af68-6985b7e5d23b_wgs_gdc_realn.bam 85455169092 BAM hg38 177f02b8-d8fc-4da9-9619-411582a25cd7 storage1 +C3N-01818.WGS.T.hg38 C3N-01818 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22e2c641-d4cd-46cf-ab29-697cad876617/f9340864-be80-405e-a3a3-e0b123762976_wgs_gdc_realn.bam 91961216211 BAM hg38 22e2c641-d4cd-46cf-ab29-697cad876617 storage1 +C3N-01821.WGS.N.hg38 C3N-01821 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65d9870e-b4d3-41dd-97ac-c15fb7282101/eef72e7e-aa67-428b-a43f-a7d6dd477c24_wgs_gdc_realn.bam 88495885754 BAM hg38 65d9870e-b4d3-41dd-97ac-c15fb7282101 storage1 +C3N-01821.WGS.T.hg38 C3N-01821 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4adacc0c-cdeb-450a-9cfd-5958f5b76181/b6fa685c-2f54-4665-b7b2-2c9b9186db2c_wgs_gdc_realn.bam 107381829537 BAM hg38 4adacc0c-cdeb-450a-9cfd-5958f5b76181 storage1 C3N-01823.WGS.A.hg38 C3N-01823 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43e69023-7983-4e5d-b4aa-a5d3173681a6/ee86383b-00b4-482e-b536-f27a462cf22d_wgs_gdc_realn.bam 91356898324 BAM hg38 43e69023-7983-4e5d-b4aa-a5d3173681a6 storage1 C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59fd9c47-a049-4483-90bf-3650711651ee/7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM hg38 59fd9c47-a049-4483-90bf-3650711651ee storage1 C3N-01823.WGS.T.hg38 C3N-01823 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad/ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wgs_gdc_realn.bam 96055710690 BAM hg38 cfcf2f7b-9f70-47a0-a2f0-d864ba6326ad storage1 C3N-01825.WGS.N.hg38 C3N-01825 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/522582a7-24d6-4b9a-9e6a-5116e3ca5c72/e85c33bd-3b8d-4bad-9735-e48f81491019_wgs_gdc_realn.bam 87791073707 BAM hg38 522582a7-24d6-4b9a-9e6a-5116e3ca5c72 storage1 -C3N-01825.WGS.T.RDNA_oBQ7nk.hg38 C3N-01825 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45a82c6e-c6d4-4716-9626-01ddb64f0b4e/42791ee5-99f8-4230-940c-d17609188034_wgs_gdc_realn.bam 86915536728 BAM hg38 45a82c6e-c6d4-4716-9626-01ddb64f0b4e storage1 C3N-01825.WGS.T.hg38.deprecated C3N-01825 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb0e4fbc-5442-43f8-ae0e-4d8d6cb67f59/3ec666f3-df1c-438d-bcc1-555e4c7db92b_wgs_gdc_realn.bam 88870399289 BAM hg38 eb0e4fbc-5442-43f8-ae0e-4d8d6cb67f59 storage1 +C3N-01825.WGS.T.RDNA_oBQ7nk.hg38 C3N-01825 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45a82c6e-c6d4-4716-9626-01ddb64f0b4e/42791ee5-99f8-4230-940c-d17609188034_wgs_gdc_realn.bam 86915536728 BAM hg38 45a82c6e-c6d4-4716-9626-01ddb64f0b4e storage1 C3N-01828.WGS.A.hg38 C3N-01828 CCRCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1d36d7a-66ef-4209-998c-6dfa4c848a1c/fff5df36-59bc-4e34-a194-e50179469f0b_wgs_gdc_realn.bam 96795677214 BAM hg38 b1d36d7a-66ef-4209-998c-6dfa4c848a1c storage1 C3N-01828.WGS.N.hg38 C3N-01828 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20d02643-385b-4abc-941e-7432e8e0755e/a56edf1b-1241-456b-8142-3d9fa753b19c_wgs_gdc_realn.bam 88073602844 BAM hg38 20d02643-385b-4abc-941e-7432e8e0755e storage1 C3N-01828.WGS.T.hg38 C3N-01828 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ba5a705-ae28-4f81-bb85-d225ecb27c47/5f133818-f707-4568-a7cb-294820a3a88c_wgs_gdc_realn.bam 95734481344 BAM hg38 0ba5a705-ae28-4f81-bb85-d225ecb27c47 storage1 @@ -2173,6 +2486,9 @@ C3N-01842.WGS.N.hg38 C3N-01842 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-01842.WGS.T.hg38 C3N-01842 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2554d6a3-cac4-46e0-9c57-0da24005921e/f370ca5a-c17b-4e60-b6b3-f0aee3f5b1c9_wgs_gdc_realn.bam 80726341564 BAM hg38 2554d6a3-cac4-46e0-9c57-0da24005921e storage1 C3N-01843.WGS.N.hg38 C3N-01843 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8bcb6d3-7c4a-4dfe-94f9-6168784a2226/2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wgs_gdc_realn.bam 83161577173 BAM hg38 d8bcb6d3-7c4a-4dfe-94f9-6168784a2226 storage1 C3N-01843.WGS.T.hg38 C3N-01843 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/37e8a8b0-1193-45aa-88ff-50ae76858075/982621a1-4bca-4b1e-ae32-15d4b9b860b6_wgs_gdc_realn.bam 87049722141 BAM hg38 37e8a8b0-1193-45aa-88ff-50ae76858075 storage1 +C3N-01846.WGS.A.hg38 C3N-01846 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/072edec1-52d2-43f1-bdc0-7cb854c6281b/2cb0e8ec-b8a9-4f65-aeb8-3a98d8889f53_wgs_gdc_realn.bam 85458051221 BAM hg38 072edec1-52d2-43f1-bdc0-7cb854c6281b storage1 +C3N-01846.WGS.N.hg38 C3N-01846 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67b1acc9-4e47-4745-8e98-4261b6c3669a/b47a302c-4e31-4c79-85e3-ead148c0237b_wgs_gdc_realn.bam 90343628884 BAM hg38 67b1acc9-4e47-4745-8e98-4261b6c3669a storage1 +C3N-01846.WGS.T.hg38 C3N-01846 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fa98c49-1ae1-4f50-9e86-e83d1a87e80e/e7aeabbd-a8b9-4804-a19d-a02b58cb27d7_wgs_gdc_realn.bam 92216746319 BAM hg38 2fa98c49-1ae1-4f50-9e86-e83d1a87e80e storage1 C3N-01847.WGS.A.hg38 C3N-01847 UCEC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/462f2069-63fc-427f-9ad3-3e7d55788cab/21d913ee-e1c1-4e89-876f-f026cd2e654c_wgs_gdc_realn.bam 87007708907 BAM hg38 462f2069-63fc-427f-9ad3-3e7d55788cab storage1 C3N-01847.WGS.N.hg38 C3N-01847 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/034ec33a-1523-479b-b3af-517c1213296d/5c5485ff-3bbe-49a3-ba3b-ea90a3c1ebd4_wgs_gdc_realn.bam 93404678397 BAM hg38 034ec33a-1523-479b-b3af-517c1213296d storage1 C3N-01847.WGS.T.hg38 C3N-01847 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f481e848-c0cc-4544-84c8-b9a59196108c/566e5e85-e970-4eb4-b258-9bcabb27379f_wgs_gdc_realn.bam 91105251479 BAM hg38 f481e848-c0cc-4544-84c8-b9a59196108c storage1 @@ -2183,6 +2499,7 @@ C3N-01849.RNA-Seq.R1.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-01849.RNA-Seq.R2.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83d649cc-79e9-457a-9e7f-e0fb46c94f8a/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ NA 83d649cc-79e9-457a-9e7f-e0fb46c94f8a storage1 C3N-01849.WGS.N.hg38 C3N-01849 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20c0f60b-3fab-4d2e-878b-23ad2d24d00a/bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wgs_gdc_realn.bam 78090125732 BAM hg38 20c0f60b-3fab-4d2e-878b-23ad2d24d00a storage1 C3N-01849.WGS.T.hg38 C3N-01849 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73/049c6c50-80e2-46b6-bb4b-951301cf76f1_wgs_gdc_realn.bam 63623607195 BAM hg38 1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73 storage1 +C3N-01850.WGS.N.hg38 C3N-01850 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/954ecba0-3516-4e98-b878-ca5f14147164/b0215200-5a5a-4ea7-89c6-09b058ab1ad4_wgs_gdc_realn.bam 94482934419 BAM hg38 954ecba0-3516-4e98-b878-ca5f14147164 storage1 C3N-01851.RNA-Seq.chimeric.T.hg38 C3N-01851 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d579e90-c8ac-467a-83bd-f9cd11b13f40/e23cf287-1d3b-4f27-86f3-d89dabfe5c10.rna_seq.chimeric.gdc_realn.bam 144581827 BAM hg38 3d579e90-c8ac-467a-83bd-f9cd11b13f40 storage1 C3N-01851.RNA-Seq.transcriptome.T.hg38 C3N-01851 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1fee552-2385-45d3-a0fd-b5a9557a6c62/e23cf287-1d3b-4f27-86f3-d89dabfe5c10.rna_seq.transcriptome.gdc_realn.bam 9091783870 BAM hg38 b1fee552-2385-45d3-a0fd-b5a9557a6c62 storage1 C3N-01851.WGS.N.hg38 C3N-01851 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b9ed756a-1b5d-48a3-b82a-807f17803b39/ba85de62-a722-4f2a-a296-c62622195e86_wgs_gdc_realn.bam 77843271265 BAM hg38 b9ed756a-1b5d-48a3-b82a-807f17803b39 storage1 @@ -2193,8 +2510,12 @@ C3N-01852.WGS.N.hg38 C3N-01852 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-01852.WGS.T.hg38 C3N-01852 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65b88411-df2b-44c8-9a4c-c97b465fdc7e/5f1e8acb-e97d-4915-9600-cd47b084100e_wgs_gdc_realn.bam 78505161924 BAM hg38 65b88411-df2b-44c8-9a4c-c97b465fdc7e storage1 C3N-01856.RNA-Seq.chimeric.T.hg38 C3N-01856 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ae79f1a-14f0-4fd0-ab1f-53a9be94888f/fdc8ec75-f157-4006-9b01-ddd2dd2d4439.rna_seq.chimeric.gdc_realn.bam 114556047 BAM hg38 0ae79f1a-14f0-4fd0-ab1f-53a9be94888f storage1 C3N-01856.RNA-Seq.transcriptome.T.hg38 C3N-01856 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/53287574-d708-430e-a091-904c58c80949/fdc8ec75-f157-4006-9b01-ddd2dd2d4439.rna_seq.transcriptome.gdc_realn.bam 9463108976 BAM hg38 53287574-d708-430e-a091-904c58c80949 storage1 +C3N-01856.WGS.N.hg38 C3N-01856 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e90546a-b4c0-4061-ab38-a69473bad093/f10efa6b-8bd4-4cf3-ac29-40030b28813b_wgs_gdc_realn.bam 88047328190 BAM hg38 9e90546a-b4c0-4061-ab38-a69473bad093 storage1 +C3N-01856.WGS.T.hg38 C3N-01856 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/455856d5-1b60-4d78-8591-8aea797add9e/486abf4c-bd38-4ee2-a2bc-87df864d1423_wgs_gdc_realn.bam 79412028971 BAM hg38 455856d5-1b60-4d78-8591-8aea797add9e storage1 C3N-01857.RNA-Seq.chimeric.T.hg38 C3N-01857 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1484aaa-31f9-4c8c-8372-a1f17f1cd9c6/0f69726c-edd1-4f9d-9d1d-bbdfaed9f920.rna_seq.chimeric.gdc_realn.bam 150060237 BAM hg38 b1484aaa-31f9-4c8c-8372-a1f17f1cd9c6 storage1 C3N-01857.RNA-Seq.transcriptome.T.hg38 C3N-01857 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebdc5e11-860f-4822-8c72-ba637b9901e9/0f69726c-edd1-4f9d-9d1d-bbdfaed9f920.rna_seq.transcriptome.gdc_realn.bam 8397507401 BAM hg38 ebdc5e11-860f-4822-8c72-ba637b9901e9 storage1 +C3N-01857.WGS.N.hg38 C3N-01857 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/159e558f-428b-40aa-b176-ec3aeed9cd15/3d771b8a-a107-41cc-b850-dd9639359d4e_wgs_gdc_realn.bam 92384124382 BAM hg38 159e558f-428b-40aa-b176-ec3aeed9cd15 storage1 +C3N-01857.WGS.T.hg38 C3N-01857 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/29d2a834-5c30-49a1-ab88-3f601c274532/d41f100d-be16-400e-9596-2062c6eaad67_wgs_gdc_realn.bam 80021318021 BAM hg38 29d2a834-5c30-49a1-ab88-3f601c274532 storage1 C3N-01858.WGS.N.hg38 C3N-01858 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86358fb6-9951-4ce5-8868-46b52bc57403/df6e28a1-8dd7-481b-b12a-c8ebd2fd973d_wgs_gdc_realn.bam 85073140408 BAM hg38 86358fb6-9951-4ce5-8868-46b52bc57403 storage1 C3N-01858.WGS.T.hg38 C3N-01858 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3967deb8-a165-43e2-8d6b-6871e4866dd6/a73a9c1a-c8de-4763-8f7a-0e85dd18e9a3_wgs_gdc_realn.bam 119155065295 BAM hg38 3967deb8-a165-43e2-8d6b-6871e4866dd6 storage1 C3N-01859.WGS.N.hg38 C3N-01859 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1e6ad2f5-ab4c-4b06-badd-2d0d246a52bf/7450df27-83a7-4d2a-ba70-02486c38bc94_wgs_gdc_realn.bam 103818412879 BAM hg38 1e6ad2f5-ab4c-4b06-badd-2d0d246a52bf storage1 @@ -2218,6 +2539,12 @@ C3N-01879.WGS.N.hg38 C3N-01879 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-01879.WGS.T.hg38 C3N-01879 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5fed5139-560c-4dbc-9672-979512d6139f/17897397-8ef1-4b7e-a4be-62724d409003_wgs_gdc_realn.bam 107595501648 BAM hg38 5fed5139-560c-4dbc-9672-979512d6139f storage1 C3N-01880.WGS.N.hg38 C3N-01880 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96d2e55b-836f-4013-b867-4703e7a2030a/1f1edace-64cf-49f2-b523-58f4a1ff2a04_wgs_gdc_realn.bam 117146846013 BAM hg38 96d2e55b-836f-4013-b867-4703e7a2030a storage1 C3N-01880.WGS.T.hg38 C3N-01880 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cf4564e-807e-47ee-a688-23c337bde369/e9c2219d-e9bc-4ccd-a5f1-34d361863681_wgs_gdc_realn.bam 94574287544 BAM hg38 6cf4564e-807e-47ee-a688-23c337bde369 storage1 +C3N-01892.WGS.A.hg38 C3N-01892 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/816d2725-b6e6-4a0a-8206-c6b07b77b0ac/e9434614-c14c-49e8-9440-4ba994f842e7_wgs_gdc_realn.bam 87408260885 BAM hg38 816d2725-b6e6-4a0a-8206-c6b07b77b0ac storage1 +C3N-01892.WGS.N.hg38 C3N-01892 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86222a6d-e2a9-4183-bb73-a518a823b924/9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wgs_gdc_realn.bam 88208725165 BAM hg38 86222a6d-e2a9-4183-bb73-a518a823b924 storage1 +C3N-01892.WGS.T.hg38 C3N-01892 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2cacbac-133d-4806-8a11-27525bebee82/262aaf3d-8ee6-4cff-bce8-a0bbaf248d1e_wgs_gdc_realn.bam 83420440370 BAM hg38 a2cacbac-133d-4806-8a11-27525bebee82 storage1 +C3N-01893.WGS.A.hg38 C3N-01893 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9c8b11f-4650-435a-8f70-2bdc4956daca/7c60c534-93d8-4c7c-b33e-8d3281b79bc1_wgs_gdc_realn.bam 81967955301 BAM hg38 c9c8b11f-4650-435a-8f70-2bdc4956daca storage1 +C3N-01893.WGS.N.hg38 C3N-01893 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/945bd9e8-b7a0-4e0b-a1de-9ca9121057b6/616d5c12-0f0b-4730-a075-3f376fee9a14_wgs_gdc_realn.bam 84790500558 BAM hg38 945bd9e8-b7a0-4e0b-a1de-9ca9121057b6 storage1 +C3N-01893.WGS.T.hg38 C3N-01893 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a818f561-7571-4136-8eed-d3d129252a09/b3ded0d8-e9fe-405b-aba1-07bbb123e5c1_wgs_gdc_realn.bam 81193198745 BAM hg38 a818f561-7571-4136-8eed-d3d129252a09 storage1 C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f89df8c-0e61-443f-864c-3484e1b8dc03/47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.genomic.gdc_realn.bam 12072962303 BAM hg38 2f89df8c-0e61-443f-864c-3484e1b8dc03 storage1 C3N-01897.WGS.N.hg38 C3N-01897 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d97d2ce5-d2dc-48f3-8918-b4023e0d16c0/3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wgs_gdc_realn.bam 111496052020 BAM hg38 d97d2ce5-d2dc-48f3-8918-b4023e0d16c0 storage1 C3N-01897.WGS.T.BULK_OVLqnQ.hg38 C3N-01897 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfaee155-68a0-4d46-aac6-d7e364233807/84bc5e5b-8adb-4fb6-a322-3b24daf08ec8_wgs_gdc_realn.bam 230465074591 BAM hg38 bfaee155-68a0-4d46-aac6-d7e364233807 storage1 @@ -2283,6 +2610,12 @@ C3N-02027.WGS.T.hg38 C3N-02027 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3N-02028.WGS.N.hg38 C3N-02028 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e249d843-17df-4561-9601-9d5fc2c010f9/7ca9695f-4331-43c0-af16-09fc88247605_wgs_gdc_realn.bam 129489764987 BAM hg38 e249d843-17df-4561-9601-9d5fc2c010f9 storage1 C3N-02028.WGS.T.hg38 C3N-02028 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8282b5a4-cb70-4721-9266-7a98ef007c7d/8e786c46-68d2-4c88-80ce-479ff84b737a_wgs_gdc_realn.bam 132464736886 BAM hg38 8282b5a4-cb70-4721-9266-7a98ef007c7d storage1 C3N-02030.WGS.N.hg38 C3N-02030 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6bef4527-ba45-445e-a6da-5b29ba4e4476/138b1cf0-0ac2-46d6-b211-35060de01e80_wgs_gdc_realn.bam 82771416633 BAM hg38 6bef4527-ba45-445e-a6da-5b29ba4e4476 storage1 +C3N-02030.WGS.T.heterogeneity.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d155398-634d-4993-a4ed-cdae99518bae/e64aabb6-f30a-4466-958c-14a07d5d7e3f_wgs_gdc_realn.bam 91538682587 BAM hg38 0d155398-634d-4993-a4ed-cdae99518bae storage1 +C3N-02030.WGS.T.heterogeneity.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/199d9247-71a4-4efb-94d1-3ce66012b272/0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wgs_gdc_realn.bam 75297593539 BAM hg38 199d9247-71a4-4efb-94d1-3ce66012b272 storage1 +C3N-02030.WGS.T.heterogeneity.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a9899f1-8a2a-4cc8-8d6e-e0c832b52b5a/7913b077-d539-41c8-8060-1ef6258df54c_wgs_gdc_realn.bam 46070776825 BAM hg38 5a9899f1-8a2a-4cc8-8d6e-e0c832b52b5a storage1 +C3N-02030.WGS.T.heterogeneity.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8be06db8-a0a0-443b-be0d-223011fcfa99/271f937c-0f6e-4fe0-bcab-bc0edfab4f76_wgs_gdc_realn.bam 50422331604 BAM hg38 8be06db8-a0a0-443b-be0d-223011fcfa99 storage1 +C3N-02030.WGS.T.heterogeneity.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c2855bb-1dc7-4f7d-9718-fe4353cd1759/dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wgs_gdc_realn.bam 86147208736 BAM hg38 9c2855bb-1dc7-4f7d-9718-fe4353cd1759 storage1 +C3N-02030.WGS.T.heterogeneity.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f77935dd-966f-4f62-aaaa-909fbed01106/07ab6239-d919-4d50-9be4-842845513886_wgs_gdc_realn.bam 60009864616 BAM hg38 f77935dd-966f-4f62-aaaa-909fbed01106 storage1 C3N-02030.WGS.T.hg38 C3N-02030 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25031dfb-de49-4bc5-8937-907f5399c3de/a81443de-b861-4bb8-ab23-501062de441f_wgs_gdc_realn.bam 87668734945 BAM hg38 25031dfb-de49-4bc5-8937-907f5399c3de storage1 C3N-02061.WGS.N.hg38 C3N-02061 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88f6cea8-8738-47a4-b0cf-91ed4803c76d/a3f680a5-4014-4b54-a23a-b952959e9e44_wgs_gdc_realn.bam 113099080074 BAM hg38 88f6cea8-8738-47a4-b0cf-91ed4803c76d storage1 C3N-02061.WGS.T.hg38 C3N-02061 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5ef336de-1301-4710-8422-2f15cfd1b164/70929d2b-ec21-4435-a063-570ec640d8ee_wgs_gdc_realn.bam 89842501130 BAM hg38 5ef336de-1301-4710-8422-2f15cfd1b164 storage1 @@ -2363,14 +2696,24 @@ C3N-02160.WGS.N.hg38 C3N-02160 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-02160.WGS.T.hg38 C3N-02160 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/209bdbfd-9b70-4eb0-b310-c7ad95f067ae/087767ce-29e8-4d56-b6aa-afe6f226d188_wgs_gdc_realn.bam 101842901175 BAM hg38 209bdbfd-9b70-4eb0-b310-c7ad95f067ae storage1 C3N-02181.RNA-Seq.chimeric.T.hg38 C3N-02181 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33e66561-638e-4780-a512-3e2838ef84f5/01cdfbec-b7b8-47bb-9b3c-04b9ceb89d19.rna_seq.chimeric.gdc_realn.bam 42932009 BAM hg38 33e66561-638e-4780-a512-3e2838ef84f5 storage1 C3N-02181.RNA-Seq.transcriptome.T.hg38 C3N-02181 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1050a45-6a91-4f0d-afbc-8b9a0e4dc309/01cdfbec-b7b8-47bb-9b3c-04b9ceb89d19.rna_seq.transcriptome.gdc_realn.bam 10494815301 BAM hg38 d1050a45-6a91-4f0d-afbc-8b9a0e4dc309 storage1 +C3N-02181.WGS.N.hg38 C3N-02181 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfde6003-aa52-42d0-b12c-ec711668f23b/c1dac155-9fca-4217-893e-8b02a8e95dd4_wgs_gdc_realn.bam 90545302597 BAM hg38 cfde6003-aa52-42d0-b12c-ec711668f23b storage1 +C3N-02181.WGS.T.hg38 C3N-02181 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bbd168-8f00-4412-ab15-83603e4abdb6/90b9cda0-892e-4532-a1c5-44df34c0e5a4_wgs_gdc_realn.bam 93689448748 BAM hg38 80bbd168-8f00-4412-ab15-83603e4abdb6 storage1 C3N-02183.RNA-Seq.chimeric.T.hg38 C3N-02183 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bee45675-43d8-4cc4-9bf2-15923ab0bf4c/c2ec45fc-3620-47a3-8ddb-f3db320ba09f.rna_seq.chimeric.gdc_realn.bam 28004234 BAM hg38 bee45675-43d8-4cc4-9bf2-15923ab0bf4c storage1 C3N-02183.RNA-Seq.transcriptome.T.hg38 C3N-02183 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/be03effa-e989-4b8e-a03a-b36c0ad8c84f/c2ec45fc-3620-47a3-8ddb-f3db320ba09f.rna_seq.transcriptome.gdc_realn.bam 9536008847 BAM hg38 be03effa-e989-4b8e-a03a-b36c0ad8c84f storage1 +C3N-02183.WGS.N.hg38 C3N-02183 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/226a2938-6b47-4ad8-a6d0-f7e4eb129a14/ede2c262-e52f-4ba3-a802-058195b89e64_wgs_gdc_realn.bam 78172680973 BAM hg38 226a2938-6b47-4ad8-a6d0-f7e4eb129a14 storage1 +C3N-02183.WGS.T.hg38 C3N-02183 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/54b12602-3d4f-4610-9667-10493d4d84ab/bd96ecbf-17b9-4dac-8090-05191cf90ee5_wgs_gdc_realn.bam 92015884024 BAM hg38 54b12602-3d4f-4610-9667-10493d4d84ab storage1 C3N-02185.RNA-Seq.chimeric.T.hg38 C3N-02185 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c816655d-3a59-4a46-a491-b4c0dd1f718c/f2bea98e-f4e6-400b-ae9c-10bad2f1a72d.rna_seq.chimeric.gdc_realn.bam 32261052 BAM hg38 c816655d-3a59-4a46-a491-b4c0dd1f718c storage1 C3N-02185.RNA-Seq.transcriptome.T.hg38 C3N-02185 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd172c6f-b1d9-41e3-a00c-68e86c3faa58/f2bea98e-f4e6-400b-ae9c-10bad2f1a72d.rna_seq.transcriptome.gdc_realn.bam 9988082266 BAM hg38 bd172c6f-b1d9-41e3-a00c-68e86c3faa58 storage1 +C3N-02185.WGS.N.hg38 C3N-02185 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35c10200-63e3-4aa0-a326-06081c354282/ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wgs_gdc_realn.bam 79381413593 BAM hg38 35c10200-63e3-4aa0-a326-06081c354282 storage1 +C3N-02185.WGS.T.hg38 C3N-02185 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28becd2a-daf1-4ec5-8d0d-7634249c7bd1/98a99ed8-3078-434b-8734-672dfba4299f_wgs_gdc_realn.bam 91562944421 BAM hg38 28becd2a-daf1-4ec5-8d0d-7634249c7bd1 storage1 C3N-02186.RNA-Seq.chimeric.T.hg38 C3N-02186 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c53b6a0e-1b25-4674-b0e2-30f7c796f28a/24075898-869a-46dc-823b-36bdccd1b538.rna_seq.chimeric.gdc_realn.bam 31357351 BAM hg38 c53b6a0e-1b25-4674-b0e2-30f7c796f28a storage1 C3N-02186.RNA-Seq.transcriptome.T.hg38 C3N-02186 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3abb6bc5-57eb-4750-a590-0b8ca4c64c62/24075898-869a-46dc-823b-36bdccd1b538.rna_seq.transcriptome.gdc_realn.bam 8819624707 BAM hg38 3abb6bc5-57eb-4750-a590-0b8ca4c64c62 storage1 +C3N-02186.WGS.N.hg38 C3N-02186 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ee0a4490-3d5d-4690-8bed-a38db3e2c1a3/90be4c44-6629-4db7-99be-e6f26416714d_wgs_gdc_realn.bam 83909668555 BAM hg38 ee0a4490-3d5d-4690-8bed-a38db3e2c1a3 storage1 +C3N-02186.WGS.T.hg38 C3N-02186 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2300cd3-70c3-4ac2-90d7-f96368b4d4ba/20703356-6eec-4dc7-a380-a6114fcc278f_wgs_gdc_realn.bam 94007956278 BAM hg38 d2300cd3-70c3-4ac2-90d7-f96368b4d4ba storage1 C3N-02188.RNA-Seq.chimeric.T.hg38 C3N-02188 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d20fe568-3b2e-4c3e-bc72-890a61aa0b52/2c57cb9b-9996-4619-80eb-c66eefedca1e.rna_seq.chimeric.gdc_realn.bam 36667724 BAM hg38 d20fe568-3b2e-4c3e-bc72-890a61aa0b52 storage1 C3N-02188.RNA-Seq.transcriptome.T.hg38 C3N-02188 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca927751-b7ef-4ed5-8ede-d16fbed93314/2c57cb9b-9996-4619-80eb-c66eefedca1e.rna_seq.transcriptome.gdc_realn.bam 12361598093 BAM hg38 ca927751-b7ef-4ed5-8ede-d16fbed93314 storage1 +C3N-02188.WGS.N.hg38 C3N-02188 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/462ec60f-d9e1-4cca-91e6-6146d9e12243/ea611a56-b305-4dcc-9d4b-620f7ff6410a_wgs_gdc_realn.bam 99011112123 BAM hg38 462ec60f-d9e1-4cca-91e6-6146d9e12243 storage1 +C3N-02188.WGS.T.hg38 C3N-02188 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b03c3510-17f5-4b92-b8eb-fd72099e47d0/2754920b-81c5-4087-8d0a-3d4142cff7c4_wgs_gdc_realn.bam 87025309564 BAM hg38 b03c3510-17f5-4b92-b8eb-fd72099e47d0 storage1 C3N-02190.RNA-Seq.chimeric.T.hg38 C3N-02190 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb8c629f-0677-4758-9f7a-75d0ec7ba654/b018dfdc-2137-4c34-b4bf-05cd7ab27e2c.rna_seq.chimeric.gdc_realn.bam 42766741 BAM hg38 bb8c629f-0677-4758-9f7a-75d0ec7ba654 storage1 C3N-02190.RNA-Seq.transcriptome.T.hg38 C3N-02190 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ddd06621-1c0c-4c5a-ac88-8bf03db5970d/b018dfdc-2137-4c34-b4bf-05cd7ab27e2c.rna_seq.transcriptome.gdc_realn.bam 12849225988 BAM hg38 ddd06621-1c0c-4c5a-ac88-8bf03db5970d storage1 C3N-02190.WGS.N.hg38 C3N-02190 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1907eba9-edc5-45eb-bf07-21627298553b/a6e52347-ea57-438b-963b-26d708da3ad1_wgs_gdc_realn.bam 82619204743 BAM hg38 1907eba9-edc5-45eb-bf07-21627298553b storage1 @@ -2400,6 +2743,9 @@ C3N-02248.WGS.N.hg38 C3N-02248 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-02248.WGS.T.hg38 C3N-02248 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec79bd0e-6eb9-4ecd-9685-f495e82b778c/6c378684-83f3-41ea-988b-68563579d68a_wgs_gdc_realn.bam 81677010106 BAM hg38 ec79bd0e-6eb9-4ecd-9685-f495e82b778c storage1 C3N-02249.WGS.N.hg38 C3N-02249 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2caf5ea0-a5fa-453c-8fe5-3a681b989632/5df2768a-0e96-490f-bff2-48589110108f_wgs_gdc_realn.bam 92762852447 BAM hg38 2caf5ea0-a5fa-453c-8fe5-3a681b989632 storage1 C3N-02249.WGS.T.hg38 C3N-02249 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74445290-cce1-4567-b21c-dcc1be852c2d/905ada72-761f-4a71-89bd-5dcabab30043_wgs_gdc_realn.bam 95003721366 BAM hg38 74445290-cce1-4567-b21c-dcc1be852c2d storage1 +C3N-02252.WGS.A.hg38 C3N-02252 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0c2ec20-9db9-49a7-a91c-3f7c2865d4c3/7c1392b8-94e4-4e62-a218-a8daa0dfb70d_wgs_gdc_realn.bam 88614410446 BAM hg38 a0c2ec20-9db9-49a7-a91c-3f7c2865d4c3 storage1 +C3N-02252.WGS.N.hg38 C3N-02252 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b26fa50b-ea4b-4324-8212-9c001c8e3b95/c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wgs_gdc_realn.bam 84828954077 BAM hg38 b26fa50b-ea4b-4324-8212-9c001c8e3b95 storage1 +C3N-02252.WGS.T.hg38 C3N-02252 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c9fb5ca-e390-4366-a48c-2570ad65020b/ebfc2cd0-54b0-4dba-afd4-a9b59f7e5706_wgs_gdc_realn.bam 90455600189 BAM hg38 1c9fb5ca-e390-4366-a48c-2570ad65020b storage1 C3N-02253.WGS.N.hg38 C3N-02253 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9593cfb4-8def-403d-a65c-f798f7b9c9b8/0ba84a92-8c3f-4d2f-b252-94f19d64ac7f_wgs_gdc_realn.bam 95128194201 BAM hg38 9593cfb4-8def-403d-a65c-f798f7b9c9b8 storage1 C3N-02253.WGS.T.hg38 C3N-02253 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5df1921-8e4c-4622-a276-f50b13cdf1a5/64ed7413-de86-4851-b0ef-e47aa17f1a3c_wgs_gdc_realn.bam 78318568643 BAM hg38 f5df1921-8e4c-4622-a276-f50b13cdf1a5 storage1 C3N-02255.RNA-Seq.chimeric.T.hg38 C3N-02255 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6582de49-0a3c-4dec-bcb3-4691e270db62/24baeb9d-b5bf-4ab6-b499-c78716c9a100.rna_seq.chimeric.gdc_realn.bam 142404202 BAM hg38 6582de49-0a3c-4dec-bcb3-4691e270db62 storage1 @@ -2436,10 +2782,23 @@ C3N-02281.WGS.N.hg38 C3N-02281 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-02281.WGS.T.hg38 C3N-02281 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f692508-a0f6-4275-831e-c32c175a45c9/e3bad720-d2a3-4514-b00a-6cfab2c5671c_wgs_gdc_realn.bam 77147732149 BAM hg38 8f692508-a0f6-4275-831e-c32c175a45c9 storage1 C3N-02282.WGS.N.hg38 C3N-02282 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2b57e57-7458-491d-89d1-5e89648ff462/8b5a5693-cd27-4083-9581-3c748292040a_wgs_gdc_realn.bam 118618949521 BAM hg38 e2b57e57-7458-491d-89d1-5e89648ff462 storage1 C3N-02282.WGS.T.hg38 C3N-02282 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33dfbcc7-8112-4fab-bd91-e5580f636e84/a7ea82bc-eefc-4de3-9673-b023fd390c78_wgs_gdc_realn.bam 153937059160 BAM hg38 33dfbcc7-8112-4fab-bd91-e5580f636e84 storage1 +C3N-02283.WGS.N.hg38 C3N-02283 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02d030b5-5b7a-41c9-ba6e-12c6db1eb429/19aa271d-2103-4fad-a065-5301809f651f_wgs_gdc_realn.bam 82170772698 BAM hg38 02d030b5-5b7a-41c9-ba6e-12c6db1eb429 storage1 +C3N-02283.WGS.T.hg38 C3N-02283 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac38d38d-ddd0-4fb5-86da-41e05dfa1062/4f64e5de-5d18-4635-857d-0c3bbe4ded3e_wgs_gdc_realn.bam 82183960488 BAM hg38 ac38d38d-ddd0-4fb5-86da-41e05dfa1062 storage1 +C3N-02284.WGS.N.hg38 C3N-02284 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34c364ee-f9e4-4e0e-8e9a-52de011021b4/c791c2be-5334-4d7b-9ab0-91a698b7efb9_wgs_gdc_realn.bam 100197693005 BAM hg38 34c364ee-f9e4-4e0e-8e9a-52de011021b4 storage1 +C3N-02284.WGS.T.hg38 C3N-02284 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/639eef3a-cbe7-4eb1-9647-f444fe63dd66/240bbd6e-5410-4449-a9c1-85d5148ce48d_wgs_gdc_realn.bam 88874339542 BAM hg38 639eef3a-cbe7-4eb1-9647-f444fe63dd66 storage1 +C3N-02285.WGS.A.hg38 C3N-02285 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c30e6f0d-25d3-45ee-94e7-ab833150ce65/2c412e3e-65bf-4971-b17b-ea46b886860b_wgs_gdc_realn.bam 95219483406 BAM hg38 c30e6f0d-25d3-45ee-94e7-ab833150ce65 storage1 +C3N-02285.WGS.N.hg38 C3N-02285 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/317eb8b8-1298-4c4e-89c9-5bf24a885bc0/69286d3c-b11d-4671-84fb-50219bfa4a7d_wgs_gdc_realn.bam 78819208763 BAM hg38 317eb8b8-1298-4c4e-89c9-5bf24a885bc0 storage1 +C3N-02285.WGS.T.hg38 C3N-02285 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ac1c2de-9499-4719-b141-a4982f55371f/bc40d70a-933b-4fab-8523-a5abcc82c6b3_wgs_gdc_realn.bam 93975848284 BAM hg38 8ac1c2de-9499-4719-b141-a4982f55371f storage1 C3N-02286.RNA-Seq.R1.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02665bb1-0f40-4959-9017-1d20d7a15ced/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ NA 02665bb1-0f40-4959-9017-1d20d7a15ced storage1 C3N-02286.RNA-Seq.R2.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bdd1ba-fe88-4d31-b371-bd54b3859722/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ NA 80bdd1ba-fe88-4d31-b371-bd54b3859722 storage1 C3N-02286.WGS.N.hg38 C3N-02286 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/049469de-687c-4e38-bddb-a16aabc783b1/ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wgs_gdc_realn.bam 77117048003 BAM hg38 049469de-687c-4e38-bddb-a16aabc783b1 storage1 C3N-02286.WGS.T.hg38 C3N-02286 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/513c7439-2b46-4105-ae68-efcee2cdddaf/4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wgs_gdc_realn.bam 80364977264 BAM hg38 513c7439-2b46-4105-ae68-efcee2cdddaf storage1 +C3N-02288.WGS.A.hg38 C3N-02288 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/484c7d93-f8f4-40a2-93dd-850690b74dea/77dcf4fd-f121-474e-a7bf-f6b8d238e0f3_wgs_gdc_realn.bam 94654764151 BAM hg38 484c7d93-f8f4-40a2-93dd-850690b74dea storage1 +C3N-02288.WGS.N.hg38 C3N-02288 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f257631d-13a7-4807-b1d6-663ef1a49a24/c7123429-3c8d-423a-9a61-67c733b83348_wgs_gdc_realn.bam 87640373571 BAM hg38 f257631d-13a7-4807-b1d6-663ef1a49a24 storage1 +C3N-02288.WGS.T.hg38 C3N-02288 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/904e2495-cb20-4d9a-98de-e9d0a82ac17d/7f25c67f-5bde-4d63-908b-8eb7a373a396_wgs_gdc_realn.bam 103111141547 BAM hg38 904e2495-cb20-4d9a-98de-e9d0a82ac17d storage1 +C3N-02289.WGS.A.hg38 C3N-02289 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e83903d-f9cc-41dc-a765-e75102ab90d2/483a4ac7-2f2a-4352-b5e8-1943c694a982_wgs_gdc_realn.bam 89308880551 BAM hg38 7e83903d-f9cc-41dc-a765-e75102ab90d2 storage1 +C3N-02289.WGS.N.hg38 C3N-02289 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/277cecf8-934f-4317-b124-1c1eea975962/d174d5b0-e1a6-4c90-9d07-707541183a9b_wgs_gdc_realn.bam 80974065111 BAM hg38 277cecf8-934f-4317-b124-1c1eea975962 storage1 +C3N-02289.WGS.T.hg38 C3N-02289 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d26fbee3-5d8e-4119-988d-c11b53aa5e02/45f472fc-d103-4071-935b-35f943d1b608_wgs_gdc_realn.bam 115695591446 BAM hg38 d26fbee3-5d8e-4119-988d-c11b53aa5e02 storage1 C3N-02290.WGS.N.hg38 C3N-02290 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02edb76d-23b0-42b7-a452-b92739131516/73ca30a6-3d6a-4c8b-96e5-991564146108_wgs_gdc_realn.bam 184225340399 BAM hg38 02edb76d-23b0-42b7-a452-b92739131516 storage1 C3N-02290.WGS.T.hg38 C3N-02290 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/481faef8-8d03-4082-978b-d55cb373fd4f/801d75b8-016b-4a06-9af7-6f00a9449d66_wgs_gdc_realn.bam 125446074964 BAM hg38 481faef8-8d03-4082-978b-d55cb373fd4f storage1 C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6401b7b9-8871-42bb-ba8b-2bec0a89e359/a1e91af2-8b5d-4fb7-9519-1b17ed5b7d5f.rna_seq.genomic.gdc_realn.bam 9068778845 BAM hg38 6401b7b9-8871-42bb-ba8b-2bec0a89e359 storage1 @@ -2449,6 +2808,8 @@ C3N-02296.WGS.N.hg38 C3N-02296 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-02296.WGS.T.hg38 C3N-02296 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b22c50b5-e3ef-48cd-ab42-0d6012bcc5c7/868c6a57-64e0-450f-a151-139f5520286d_wgs_gdc_realn.bam 137328908321 BAM hg38 b22c50b5-e3ef-48cd-ab42-0d6012bcc5c7 storage1 C3N-02298.WGS.N.hg38 C3N-02298 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5ed742b-3d0d-4f0c-b809-01d07b7e2fd4/349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wgs_gdc_realn.bam 105695375521 BAM hg38 e5ed742b-3d0d-4f0c-b809-01d07b7e2fd4 storage1 C3N-02298.WGS.T.hg38 C3N-02298 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2174b720-f136-468b-b8ea-c6c5714facb0/93c0c350-e6ac-4b76-95fd-428c202de743_wgs_gdc_realn.bam 34208668136 BAM hg38 2174b720-f136-468b-b8ea-c6c5714facb0 storage1 +C3N-02300.WGS.N.hg38 C3N-02300 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/156af5ca-43a0-4ed7-a4f0-f43b8fc3a486/b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wgs_gdc_realn.bam 88657058284 BAM hg38 156af5ca-43a0-4ed7-a4f0-f43b8fc3a486 storage1 +C3N-02300.WGS.T.hg38 C3N-02300 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/248f9ba8-c5ac-42fa-9815-c1d02a6d6ff7/98d7a110-ffda-421d-9fc0-f87a0d921257_wgs_gdc_realn.bam 88136819750 BAM hg38 248f9ba8-c5ac-42fa-9815-c1d02a6d6ff7 storage1 C3N-02302.WGS.N.hg38 C3N-02302 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae1586f1-701a-4540-9728-5c2f0ab51d19/307efc27-4a1a-4bd5-8705-31e1573bd0fb_wgs_gdc_realn.bam 110881040007 BAM hg38 ae1586f1-701a-4540-9728-5c2f0ab51d19 storage1 C3N-02302.WGS.T.hg38 C3N-02302 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0b38e3a6-32a4-42ef-b121-e7bca823c7fd/98562991-cf38-4173-90dd-518f188a593c_wgs_gdc_realn.bam 101473581985 BAM hg38 0b38e3a6-32a4-42ef-b121-e7bca823c7fd storage1 C3N-02332.WGS.N.hg38 C3N-02332 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93e5a295-e6c0-4a31-9c06-258d370e953f/225b554b-e33a-463e-a6d8-699f7692b126_wgs_gdc_realn.bam 76482193491 BAM hg38 93e5a295-e6c0-4a31-9c06-258d370e953f storage1 @@ -2459,8 +2820,17 @@ C3N-02337.WGS.N.hg38 C3N-02337 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-02337.WGS.T.hg38 C3N-02337 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/818bda3f-0514-4b8d-8805-ed25754e3eb8/f262d2e0-15d6-4d36-8df9-9932021a8268_wgs_gdc_realn.bam 88353967037 BAM hg38 818bda3f-0514-4b8d-8805-ed25754e3eb8 storage1 C3N-02338.WGS.N.hg38 C3N-02338 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d858ed2-3ad5-4890-b31e-51250b345ed3/da606039-6f4f-4d22-bb19-994cd41fddcd_wgs_gdc_realn.bam 118338303050 BAM hg38 3d858ed2-3ad5-4890-b31e-51250b345ed3 storage1 C3N-02338.WGS.T.hg38 C3N-02338 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea049fdf-f6ea-4ba2-8fb3-977bba4428a4/25efed2a-bca1-4367-803f-e800d2e509d6_wgs_gdc_realn.bam 150768515099 BAM hg38 ea049fdf-f6ea-4ba2-8fb3-977bba4428a4 storage1 +C3N-02339.WGS.A.hg38 C3N-02339 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b69e82b-fe1c-4997-bc1c-d61e2c7a4fbd/d99afba5-4370-4faf-a2ed-6a8739dfd22f_wgs_gdc_realn.bam 88503423270 BAM hg38 2b69e82b-fe1c-4997-bc1c-d61e2c7a4fbd storage1 +C3N-02339.WGS.N.hg38 C3N-02339 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a19f353c-2b13-4f53-b62a-6c7c11516a13/53109f4a-593a-4191-92b6-a188273d4470_wgs_gdc_realn.bam 98788562322 BAM hg38 a19f353c-2b13-4f53-b62a-6c7c11516a13 storage1 +C3N-02339.WGS.T.hg38 C3N-02339 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d27f76b7-9654-4592-ab83-7af0e18da134/dd35d5e7-e2bd-4497-89a1-f7f48740de73_wgs_gdc_realn.bam 117259664944 BAM hg38 d27f76b7-9654-4592-ab83-7af0e18da134 storage1 C3N-02372.WGS.N.hg38 C3N-02372 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dc554ad1-c4ea-4b23-9a85-02ac88c77398/081a4e84-b6f6-4f0b-b704-d354949b4730_wgs_gdc_realn.bam 103395445838 BAM hg38 dc554ad1-c4ea-4b23-9a85-02ac88c77398 storage1 C3N-02372.WGS.T.hg38 C3N-02372 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49d1cacd-a3c9-42d7-b1d1-7c01ca5dabc0/e3518070-0733-4f7e-b857-3bb3d89a8041_wgs_gdc_realn.bam 130851163214 BAM hg38 49d1cacd-a3c9-42d7-b1d1-7c01ca5dabc0 storage1 +C3N-02374.WGS.A.hg38 C3N-02374 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b83dc75-f927-4f9f-ab0f-8d6179e81432/c63f8b1c-3190-4d68-a36c-d18296220db4_wgs_gdc_realn.bam 89932505162 BAM hg38 2b83dc75-f927-4f9f-ab0f-8d6179e81432 storage1 +C3N-02374.WGS.N.hg38 C3N-02374 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e16cc46-ac3e-4426-852c-a2229b92e01f/0db610c9-ca9b-4565-a6ba-e6d8103918ad_wgs_gdc_realn.bam 84947702213 BAM hg38 4e16cc46-ac3e-4426-852c-a2229b92e01f storage1 +C3N-02374.WGS.T.hg38 C3N-02374 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c14ac1e7-9708-42ab-88d5-6168a0e43aeb/55efde83-7f58-4056-817a-d992871a83f6_wgs_gdc_realn.bam 82973215891 BAM hg38 c14ac1e7-9708-42ab-88d5-6168a0e43aeb storage1 +C3N-02375.WGS.A.hg38 C3N-02375 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e70c2a93-a5b9-46cc-8992-cf1d23cdc2be/d409515c-a3f0-420a-b761-869c131bf575_wgs_gdc_realn.bam 86498872025 BAM hg38 e70c2a93-a5b9-46cc-8992-cf1d23cdc2be storage1 +C3N-02375.WGS.N.hg38 C3N-02375 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/63d594ef-815a-4656-bf69-754be2faecce/c17874dd-d150-43ac-9eb8-a6d73af712bc_wgs_gdc_realn.bam 105408582639 BAM hg38 63d594ef-815a-4656-bf69-754be2faecce storage1 +C3N-02375.WGS.T.hg38 C3N-02375 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a1901f1a-5c30-4b7d-bd51-19d3f74f0d1c/495a32a0-f447-400d-a8b5-893945087969_wgs_gdc_realn.bam 107431913597 BAM hg38 a1901f1a-5c30-4b7d-bd51-19d3f74f0d1c storage1 C3N-02379.WGS.A.hg38 C3N-02379 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f6feed2b-0e98-4711-aa28-0e5d80a5885b/0581226d-c103-4250-875b-809c077595b7_wgs_gdc_realn.bam 89549929932 BAM hg38 f6feed2b-0e98-4711-aa28-0e5d80a5885b storage1 C3N-02379.WGS.N.hg38 C3N-02379 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/768b0208-edb7-42a2-a514-51490b939029/65f832db-5d04-48a3-b292-b4554eadc912_wgs_gdc_realn.bam 84212898575 BAM hg38 768b0208-edb7-42a2-a514-51490b939029 storage1 C3N-02379.WGS.T.hg38 C3N-02379 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e48ec09d-b9ed-44ff-bc5f-2f35fedefeee/41acd1fe-34cc-4b28-8c65-2604cbd849f6_wgs_gdc_realn.bam 91998469500 BAM hg38 e48ec09d-b9ed-44ff-bc5f-2f35fedefeee storage1 @@ -2478,6 +2848,12 @@ C3N-02423.WGS.T.hg38 C3N-02423 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3N-02424.WGS.A.hg38 C3N-02424 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5f6e383c-14dc-4b37-9caa-30b139270c79/67833e4f-0dc8-4ac0-8ce9-6ee52ecd2375_wgs_gdc_realn.bam 86954588180 BAM hg38 5f6e383c-14dc-4b37-9caa-30b139270c79 storage1 C3N-02424.WGS.N.hg38 C3N-02424 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19e3ade5-44c5-4976-8f68-a2f41c39f6a4/b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wgs_gdc_realn.bam 82548105039 BAM hg38 19e3ade5-44c5-4976-8f68-a2f41c39f6a4 storage1 C3N-02424.WGS.T.hg38 C3N-02424 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d8143de-035d-4a5c-a107-8b941db9f8a8/8a378a0d-4f1b-434b-bb5d-1c58464508c7_wgs_gdc_realn.bam 78848854254 BAM hg38 4d8143de-035d-4a5c-a107-8b941db9f8a8 storage1 +C3N-02425.WGS.A.hg38 C3N-02425 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f22544c-f89c-4b01-9334-1e1b3465a1e4/e10db3e3-1144-4ef7-a960-e98f71a8c0a9_wgs_gdc_realn.bam 99336459347 BAM hg38 3f22544c-f89c-4b01-9334-1e1b3465a1e4 storage1 +C3N-02425.WGS.N.hg38 C3N-02425 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/609f227d-1b3f-47be-86f2-8cd4abbd2c25/72330c53-0b7a-409b-9e93-11c08fc31d6d_wgs_gdc_realn.bam 94482265954 BAM hg38 609f227d-1b3f-47be-86f2-8cd4abbd2c25 storage1 +C3N-02425.WGS.T.hg38 C3N-02425 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82cb75c9-ab32-47eb-998d-8b4fe4469eaf/e34fc8d9-c7d2-4546-a98a-b789b4789e3c_wgs_gdc_realn.bam 94924473332 BAM hg38 82cb75c9-ab32-47eb-998d-8b4fe4469eaf storage1 +C3N-02426.WGS.A.hg38 C3N-02426 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38601758-4b1d-44e1-93f7-83ce52d07748/4e0695ea-e6c2-48c9-b9b3-11f2f2bfbc45_wgs_gdc_realn.bam 102087040407 BAM hg38 38601758-4b1d-44e1-93f7-83ce52d07748 storage1 +C3N-02426.WGS.N.hg38 C3N-02426 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abc333f7-1456-4fb9-999b-4e8089e0dee3/6050187d-95a4-438f-8e26-77e9a3f19eae_wgs_gdc_realn.bam 93855791086 BAM hg38 abc333f7-1456-4fb9-999b-4e8089e0dee3 storage1 +C3N-02426.WGS.T.hg38 C3N-02426 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f689886-d8ac-4983-a5a4-2f2349c8da40/700bad5b-96de-413e-bf46-3cdb5c72ad02_wgs_gdc_realn.bam 91131346394 BAM hg38 6f689886-d8ac-4983-a5a4-2f2349c8da40 storage1 C3N-02429.WGS.N.hg38 C3N-02429 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a963bf8d-4bf5-4f8c-b9dd-f541dfde772d/408bb107-9884-4af4-88df-7e0012ce26d3_wgs_gdc_realn.bam 152219181292 BAM hg38 a963bf8d-4bf5-4f8c-b9dd-f541dfde772d storage1 C3N-02429.WGS.T.hg38 C3N-02429 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e786253e-9076-4682-abfe-dc58ace32afc/6751ad3a-d188-444b-bed2-ff769ce17c6a_wgs_gdc_realn.bam 143863227673 BAM hg38 e786253e-9076-4682-abfe-dc58ace32afc storage1 C3N-02431.WGS.N.hg38 C3N-02431 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e828b23-4d5a-4c78-bee2-e1a6f93ebb64/8836c002-6b85-4c30-97cf-8ba51924f07a_wgs_gdc_realn.bam 143220227850 BAM hg38 9e828b23-4d5a-4c78-bee2-e1a6f93ebb64 storage1 @@ -2485,6 +2861,11 @@ C3N-02431.WGS.T.hg38 C3N-02431 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Acti C3N-02433.WGS.A.hg38 C3N-02433 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/655eda39-6341-4047-9fa5-cb43a4355b30/0f0b6fff-90e7-4b7a-9400-6f9a623eac81_wgs_gdc_realn.bam 89167545293 BAM hg38 655eda39-6341-4047-9fa5-cb43a4355b30 storage1 C3N-02433.WGS.N.hg38 C3N-02433 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf71e4a2-7f68-4333-8f25-0c00054bd995/075c856b-bc17-431b-9692-d02ec4b39a32_wgs_gdc_realn.bam 81719235650 BAM hg38 bf71e4a2-7f68-4333-8f25-0c00054bd995 storage1 C3N-02433.WGS.T.hg38 C3N-02433 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ab2c762-ea9f-4e33-8e55-44526be3f958/4285bae5-67c5-466a-b08b-ddc845151568_wgs_gdc_realn.bam 101989737101 BAM hg38 9ab2c762-ea9f-4e33-8e55-44526be3f958 storage1 +C3N-02434.WGS.A.hg38 C3N-02434 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f509c792-9a9d-466d-bff0-1386da7a7c6a/55cb1ac6-fd2d-4494-845d-b1930d004a3a_wgs_gdc_realn.bam 82265321409 BAM hg38 f509c792-9a9d-466d-bff0-1386da7a7c6a storage1 +C3N-02434.WGS.N.hg38 C3N-02434 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ac0f592d-1ce6-4cc2-afb3-0484a93af603/e7171412-d3ad-4793-ad31-101dab6a7d2e_wgs_gdc_realn.bam 85325708618 BAM hg38 ac0f592d-1ce6-4cc2-afb3-0484a93af603 storage1 +C3N-02434.WGS.T.hg38 C3N-02434 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/951fe783-47bd-48cd-9e81-3140735b74e4/3b07b204-2fa5-46a2-8b88-ebf0c39b0f03_wgs_gdc_realn.bam 88801156431 BAM hg38 951fe783-47bd-48cd-9e81-3140735b74e4 storage1 +C3N-02435.WGS.N.hg38 C3N-02435 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04c389c7-e942-48a7-b22d-c85ede5ecc77/0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wgs_gdc_realn.bam 192299604099 BAM hg38 04c389c7-e942-48a7-b22d-c85ede5ecc77 storage1 +C3N-02435.WGS.T.hg38 C3N-02435 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0a70378-c8ef-4ef6-bb97-2968ea615766/cba5b303-2d15-4b89-af40-deb7918cef18_wgs_gdc_realn.bam 77964146155 BAM hg38 d0a70378-c8ef-4ef6-bb97-2968ea615766 storage1 C3N-02436.WGS.N.hg38 C3N-02436 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/594f99b7-c9f2-421b-a08a-2e5f131d16ef/ff40e1c4-0a27-4520-98fb-a6785a90c2cf_wgs_gdc_realn.bam 166822187937 BAM hg38 594f99b7-c9f2-421b-a08a-2e5f131d16ef storage1 C3N-02436.WGS.T.hg38 C3N-02436 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e7277c3-d3a5-4bd0-9aa8-96fe8333310e/0832099e-db54-43c7-9801-d45f66a09d9d_wgs_gdc_realn.bam 148484711610 BAM hg38 8e7277c3-d3a5-4bd0-9aa8-96fe8333310e storage1 C3N-02437.WGS.N.hg38 C3N-02437 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/06466397-79c9-4f12-8b65-3371db9d467d/1f6a7fcf-9360-4258-90e2-daddece83775_wgs_gdc_realn.bam 97354995064 BAM hg38 06466397-79c9-4f12-8b65-3371db9d467d storage1 @@ -2493,6 +2874,10 @@ C3N-02439.WGS.N.hg38 C3N-02439 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-02439.WGS.T.hg38 C3N-02439 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95c64732-7946-44e8-af75-4590cc70afff/25d28a81-9e72-428c-abe3-bdcd5cbea42f_wgs_gdc_realn.bam 145645453113 BAM hg38 95c64732-7946-44e8-af75-4590cc70afff storage1 C3N-02451.WGS.N.hg38 C3N-02451 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6c6ba47f-e277-43f5-bb03-4f963e20d946/63ece0bb-876d-4c0f-9251-1a39216e701e_wgs_gdc_realn.bam 82066438981 BAM hg38 6c6ba47f-e277-43f5-bb03-4f963e20d946 storage1 C3N-02451.WGS.T.hg38 C3N-02451 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67b5c21d-eda4-4686-b2d1-b47116a7b626/2d3be50b-acef-4dbb-9f81-09afd71a6d01_wgs_gdc_realn.bam 83928856852 BAM hg38 67b5c21d-eda4-4686-b2d1-b47116a7b626 storage1 +C3N-02494.WGS.N.hg38 C3N-02494 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1a090903-7d30-4882-9dd3-96994dc4ee8a/826b8522-ba14-49a4-9de2-476a38a1f58b_wgs_gdc_realn.bam 184833543871 BAM hg38 1a090903-7d30-4882-9dd3-96994dc4ee8a storage1 +C3N-02494.WGS.T.hg38 C3N-02494 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e3ebcb1-084c-460a-b185-eeff03a0198e/2683741f-4fc1-413d-89e4-8b0e31b781a4_wgs_gdc_realn.bam 169361724640 BAM hg38 2e3ebcb1-084c-460a-b185-eeff03a0198e storage1 +C3N-02523.WGS.N.hg38 C3N-02523 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73b16f58-41fe-44ef-b653-b881d70a5894/d3898b9b-e275-4f84-b7ad-808669463672_wgs_gdc_realn.bam 167109332575 BAM hg38 73b16f58-41fe-44ef-b653-b881d70a5894 storage1 +C3N-02523.WGS.T.hg38 C3N-02523 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7fbe618d-a42a-4b83-9449-12eacb7657f7/f05424ce-b910-4564-b808-a01185fe69cf_wgs_gdc_realn.bam 154515533787 BAM hg38 7fbe618d-a42a-4b83-9449-12eacb7657f7 storage1 C3N-02529.WGS.A.hg38 C3N-02529 LUAD WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/942a8f34-9df9-4652-b255-f798291e99e7/6b3df7a3-49c3-44c1-9496-030df7e028b9_wgs_gdc_realn.bam 90278508515 BAM hg38 942a8f34-9df9-4652-b255-f798291e99e7 storage1 C3N-02529.WGS.N.hg38 C3N-02529 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e52a2f34-d3d1-4a00-9669-b9f670b4ac8a/f5d583a7-082d-4092-8fe4-98747800f95d_wgs_gdc_realn.bam 87551896214 BAM hg38 e52a2f34-d3d1-4a00-9669-b9f670b4ac8a storage1 C3N-02529.WGS.T.hg38 C3N-02529 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43b89f28-f040-4a26-9e58-f3f8fc39a7a6/3fa7720d-8632-4e9f-8de8-a87db733f78c_wgs_gdc_realn.bam 95339830419 BAM hg38 43b89f28-f040-4a26-9e58-f3f8fc39a7a6 storage1 @@ -2502,6 +2887,9 @@ C3N-02572.WGS.T.hg38 C3N-02572 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Activ C3N-02573.RNA-Seq.genomic.T.hg38 C3N-02573 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b33af3a-530e-4cd5-bb9d-020154812791/53286c96-2f8f-40fe-a404-d73607162a70.rna_seq.genomic.gdc_realn.bam 9746350795 BAM hg38 6b33af3a-530e-4cd5-bb9d-020154812791 storage1 C3N-02573.WGS.N.hg38 C3N-02573 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/773bac6f-f93d-4725-a0f9-4ea36c8a6f95/935b0c08-6d0d-427b-8161-738fda126ac0_wgs_gdc_realn.bam 125831158753 BAM hg38 773bac6f-f93d-4725-a0f9-4ea36c8a6f95 storage1 C3N-02573.WGS.T.hg38 C3N-02573 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f27fef19-dcf8-4de0-a185-abe201f7ba1b/09bdd740-6032-4adf-b829-b3e04b05bf3c_wgs_gdc_realn.bam 216847327716 BAM hg38 f27fef19-dcf8-4de0-a185-abe201f7ba1b storage1 +C3N-02575.WGS.A.hg38 C3N-02575 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a4d18e5-9d19-4494-81e4-e3a2a59b7e87/9aa1d7b9-93fc-4f46-9124-e19c58382eed_wgs_gdc_realn.bam 76037232326 BAM hg38 3a4d18e5-9d19-4494-81e4-e3a2a59b7e87 storage1 +C3N-02575.WGS.N.hg38 C3N-02575 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/087ff243-04f7-469f-8fa6-1eaae55e2e51/0d386142-f9ba-4144-b249-cc863cd80733_wgs_gdc_realn.bam 87571271106 BAM hg38 087ff243-04f7-469f-8fa6-1eaae55e2e51 storage1 +C3N-02575.WGS.T.hg38 C3N-02575 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3c6274ad-fe2b-4c08-8b48-a4e48e82c3a0/c13bec2b-8009-4020-831a-4b6f51dfc6c4_wgs_gdc_realn.bam 86747873140 BAM hg38 3c6274ad-fe2b-4c08-8b48-a4e48e82c3a0 storage1 C3N-02577.WGS.N.hg38 C3N-02577 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b04ece1-4e1c-4959-abc7-06efb5d6e218/bd2b4798-27a5-41ef-9acb-4dea43900385_wgs_gdc_realn.bam 196737925175 BAM hg38 1b04ece1-4e1c-4959-abc7-06efb5d6e218 storage1 C3N-02577.WGS.T.hg38 C3N-02577 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67e8d9a9-63c8-4f7a-ade5-f836f1603b07/144b7fc3-4170-499b-9fc0-4fa930de9fcf_wgs_gdc_realn.bam 169957395212 BAM hg38 67e8d9a9-63c8-4f7a-ade5-f836f1603b07 storage1 C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1eb95990-3581-42f0-bbe2-24d423cd2aac/a60e85e1-a21e-4c1c-89f6-507cdc9bdf58.rna_seq.genomic.gdc_realn.bam 11340434997 BAM hg38 1eb95990-3581-42f0-bbe2-24d423cd2aac storage1 @@ -2558,6 +2946,9 @@ C3N-02639.WGS.N.hg38 C3N-02639 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-02639.WGS.T.hg38 C3N-02639 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9db7e9b9-f714-46bd-928a-6e5ac3fdfe33/e37b922b-5835-4a04-915b-7cb5d83b1f84_wgs_gdc_realn.bam 96071456183 BAM hg38 9db7e9b9-f714-46bd-928a-6e5ac3fdfe33 storage1 C3N-02672.WGS.N.hg38 C3N-02672 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b420a52b-7f73-41ea-832d-33e76186d2d9/d6f68369-a57e-4335-bea5-961283563bb4_wgs_gdc_realn.bam 157758081251 BAM hg38 b420a52b-7f73-41ea-832d-33e76186d2d9 storage1 C3N-02672.WGS.T.hg38 C3N-02672 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0ba8e418-b735-4739-86eb-f4f9b1adf016/1afc8168-1ab4-4065-bed1-f6058b5c0e7e_wgs_gdc_realn.bam 133509633067 BAM hg38 0ba8e418-b735-4739-86eb-f4f9b1adf016 storage1 +C3N-02675.WGS.A.hg38 C3N-02675 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92e48373-e903-4089-93a1-5a80b2478351/abe3dff6-cc15-4ea2-ba06-a1ae395fc746_wgs_gdc_realn.bam 83983330902 BAM hg38 92e48373-e903-4089-93a1-5a80b2478351 storage1 +C3N-02675.WGS.N.hg38 C3N-02675 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46649ff8-5eef-461d-be8e-cb0e0b8ee733/fce61b54-8a30-48b3-ba10-2be185ce46c3_wgs_gdc_realn.bam 97745091869 BAM hg38 46649ff8-5eef-461d-be8e-cb0e0b8ee733 storage1 +C3N-02675.WGS.T.hg38 C3N-02675 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fba389cc-6cd7-46e7-9329-36d4a2220191/710d992c-4b0c-4c62-bd56-075b0b8ccd48_wgs_gdc_realn.bam 88814395582 BAM hg38 fba389cc-6cd7-46e7-9329-36d4a2220191 storage1 C3N-02678.WGS.N.hg38 C3N-02678 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5e83454-c52b-4426-a985-fe9ffdaa710f/e63fe275-2c51-449e-805b-1a2447ccb101_wgs_gdc_realn.bam 109977924868 BAM hg38 c5e83454-c52b-4426-a985-fe9ffdaa710f storage1 C3N-02678.WGS.T.hg38 C3N-02678 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d148de8-640e-4192-872b-cb71225ced22/9807dd59-273e-4b26-ba72-f0ecc39ae673_wgs_gdc_realn.bam 119256411965 BAM hg38 6d148de8-640e-4192-872b-cb71225ced22 storage1 C3N-02681.RNA-Seq.R1.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a9a4c580-e93e-4331-bcd2-26bd9f24d024/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ NA a9a4c580-e93e-4331-bcd2-26bd9f24d024 storage1 @@ -2773,6 +3164,8 @@ C3N-03042.WGS.N.hg38 C3N-03042 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-03042.WGS.T.hg38 C3N-03042 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e77e0933-93ec-4d5b-b832-3e5e92bc3308/385ba2e4-215b-41d3-898f-70ce3b49122a_wgs_gdc_realn.bam 134499741083 BAM hg38 e77e0933-93ec-4d5b-b832-3e5e92bc3308 storage1 C3N-03045.WGS.N.hg38 C3N-03045 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8adbc66-091f-40c5-bb73-d39fa938795a/10aa4de5-0954-48a0-8eb0-79762083515d_wgs_gdc_realn.bam 100490045496 BAM hg38 e8adbc66-091f-40c5-bb73-d39fa938795a storage1 C3N-03045.WGS.T.hg38 C3N-03045 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/840d60f6-8ccd-4f02-8f64-c782c153ea83/4cc74c91-25c6-4051-b4ba-eee19c2858f4_wgs_gdc_realn.bam 106079190636 BAM hg38 840d60f6-8ccd-4f02-8f64-c782c153ea83 storage1 +C3N-03051.WGS.N.hg38 C3N-03051 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5552d09-5af1-462f-9d39-acc70d4d4de2/82120e94-1c95-43ec-8d66-2b7e80777cfc_wgs_gdc_realn.bam 173475741404 BAM hg38 c5552d09-5af1-462f-9d39-acc70d4d4de2 storage1 +C3N-03051.WGS.T.hg38 C3N-03051 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd5d9762-8fe4-4d55-9ff7-7ca679221f0e/ad04e66f-3736-4e44-bded-696cf702868b_wgs_gdc_realn.bam 188951043592 BAM hg38 cd5d9762-8fe4-4d55-9ff7-7ca679221f0e storage1 C3N-03052.WGS.N.hg38 C3N-03052 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4af30506-02d5-4cb4-8d62-41bd655953dd/1339bb46-f48f-4076-9d91-6fe4d07a4829_wgs_gdc_realn.bam 89532965838 BAM hg38 4af30506-02d5-4cb4-8d62-41bd655953dd storage1 C3N-03052.WGS.T.hg38 C3N-03052 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a3deaf9-3782-4853-a05b-9f8b1b491d7f/0d01cdc2-fbd8-497a-b026-d1c3206a5460_wgs_gdc_realn.bam 94784169817 BAM hg38 6a3deaf9-3782-4853-a05b-9f8b1b491d7f storage1 C3N-03054.WGS.N.hg38 C3N-03054 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2dfedb7e-a823-4d30-abde-ad168228f0a5/4d74aa49-29f0-4033-a036-95b2fef1a5eb_wgs_gdc_realn.bam 81749702103 BAM hg38 2dfedb7e-a823-4d30-abde-ad168228f0a5 storage1 @@ -2792,10 +3185,14 @@ C3N-03070.RNA-Seq.chimeric.T.hg38 C3N-03070 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-03070.RNA-Seq.transcriptome.T.hg38 C3N-03070 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/223c149c-69b7-4288-ad29-79135ab328ff/b1caea76-fffa-42a4-8147-c0135dc5368e.rna_seq.transcriptome.gdc_realn.bam 9446797803 BAM hg38 223c149c-69b7-4288-ad29-79135ab328ff storage1 C3N-03070.WGS.N.hg38 C3N-03070 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3b25f0f8-dc89-4946-ac13-cdde820a8595/13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wgs_gdc_realn.bam 87863624867 BAM hg38 3b25f0f8-dc89-4946-ac13-cdde820a8595 storage1 C3N-03070.WGS.T.hg38 C3N-03070 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/067b2d03-0e13-4df8-be26-507de3e5b09d/3d3a5916-ded3-4257-84d2-b71a75547112_wgs_gdc_realn.bam 86267479695 BAM hg38 067b2d03-0e13-4df8-be26-507de3e5b09d storage1 +C3N-03072.WGS.N.hg38 C3N-03072 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f/d1fe7625-edef-4de3-8580-c5a1e327b334_wgs_gdc_realn.bam 151186957717 BAM hg38 82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f storage1 +C3N-03072.WGS.T.hg38 C3N-03072 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/434ab82e-fa78-47ab-9bc0-60020e63fc04/a695af96-c8ba-42aa-8290-8f485ccdbdb2_wgs_gdc_realn.bam 155573604535 BAM hg38 434ab82e-fa78-47ab-9bc0-60020e63fc04 storage1 C3N-03073.WGS.N.hg38 C3N-03073 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/da91d771-6aa6-477a-8ebf-0e8922f3955b/d640799e-ed19-4c36-bb6c-7642f28e080a_wgs_gdc_realn.bam 109719914284 BAM hg38 da91d771-6aa6-477a-8ebf-0e8922f3955b storage1 C3N-03073.WGS.T.hg38 C3N-03073 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d639f87e-d562-4253-8c9b-794700a6cdac/0de194e7-cd6e-42b7-b1bc-26838dfa9f15_wgs_gdc_realn.bam 117599026378 BAM hg38 d639f87e-d562-4253-8c9b-794700a6cdac storage1 C3N-03074.WGS.N.hg38 C3N-03074 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9cc38e27-d6da-4b5b-ba25-c39f54c4fc3e/8f87622c-43e3-4176-849f-8334b1a8eefa_wgs_gdc_realn.bam 81937168422 BAM hg38 9cc38e27-d6da-4b5b-ba25-c39f54c4fc3e storage1 C3N-03074.WGS.T.hg38 C3N-03074 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e394b658-0cbe-4fac-a874-79f48a6029bf/9323ca12-aefe-4fa5-ab15-e9b3a8e68fa3_wgs_gdc_realn.bam 112346162964 BAM hg38 e394b658-0cbe-4fac-a874-79f48a6029bf storage1 +C3N-03076.WGS.N.hg38 C3N-03076 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/67ebae8e-90b8-46d9-a98a-aec6cd48fc07/fd173e62-56bf-400c-a27f-4109dc0d92d5_wgs_gdc_realn.bam 144925177216 BAM hg38 67ebae8e-90b8-46d9-a98a-aec6cd48fc07 storage1 +C3N-03076.WGS.T.hg38 C3N-03076 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a2be4eb8-4ecb-4d63-bb32-287fade4fcde/dba1ce27-57d7-4430-af83-f44f7cf2b203_wgs_gdc_realn.bam 151198895596 BAM hg38 a2be4eb8-4ecb-4d63-bb32-287fade4fcde storage1 C3N-03080.WGS.N.hg38 C3N-03080 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50165bf1-3e52-4800-ad78-eb7ba887f5be/98e20abb-8675-4c58-b729-d4e6c6c0a2ac_wgs_gdc_realn.bam 100146822480 BAM hg38 50165bf1-3e52-4800-ad78-eb7ba887f5be storage1 C3N-03080.WGS.T.hg38 C3N-03080 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c241c9d3-e878-4fc2-9724-ce408f9f575b/0ed3cb3f-d683-48c2-a08e-a70b66701d24_wgs_gdc_realn.bam 145287676126 BAM hg38 c241c9d3-e878-4fc2-9724-ce408f9f575b storage1 C3N-03086.RNA-Seq.genomic.T.hg38 C3N-03086 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91bf833d-8116-4b7b-a063-0da874e1f4d7/bee3d7bf-ab95-44c8-ae16-a46a664e5f69.rna_seq.genomic.gdc_realn.bam 7699865467 BAM hg38 91bf833d-8116-4b7b-a063-0da874e1f4d7 storage1 @@ -2805,6 +3202,10 @@ C3N-03088.RNA-Seq.chimeric.T.hg38 C3N-03088 GBM RNA-Seq tumor /storage1/fs1/m.wy C3N-03088.RNA-Seq.transcriptome.T.hg38 C3N-03088 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91cdff11-e649-4462-93ff-92fbb236e4e1/56e1db9b-f703-4cc3-a0eb-a9fce85f0fad.rna_seq.transcriptome.gdc_realn.bam 11568168151 BAM hg38 91cdff11-e649-4462-93ff-92fbb236e4e1 storage1 C3N-03088.WGS.N.hg38 C3N-03088 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9238b256-117e-46b9-9f38-b6a08a09cc30/36c1c91c-84e9-4021-819e-ccb9d6f8f637_wgs_gdc_realn.bam 97201246792 BAM hg38 9238b256-117e-46b9-9f38-b6a08a09cc30 storage1 C3N-03088.WGS.T.hg38 C3N-03088 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e2789d7b-483b-4c2f-a4cf-30313aefc7c4/ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wgs_gdc_realn.bam 85717530907 BAM hg38 e2789d7b-483b-4c2f-a4cf-30313aefc7c4 storage1 +C3N-03092.WGS.N.hg38 C3N-03092 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/414ce4ab-48ea-4cbf-b375-31b33e82e22c/7d908a13-1a96-4c8a-a8ee-2574360aeaff_wgs_gdc_realn.bam 73753015124 BAM hg38 414ce4ab-48ea-4cbf-b375-31b33e82e22c storage1 +C3N-03092.WGS.T.hg38 C3N-03092 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d79c9751-c8a7-41b2-aa80-3bdf991522d2/47d67c08-4bdf-4fed-a0fb-fae09f213c99_wgs_gdc_realn.bam 200603476272 BAM hg38 d79c9751-c8a7-41b2-aa80-3bdf991522d2 storage1 +C3N-03093.WGS.N.hg38 C3N-03093 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61a735df-47bf-471d-8893-f0bbcfd04763/b52dfbb4-71a1-40b5-8f03-56122d428afd_wgs_gdc_realn.bam 158944152577 BAM hg38 61a735df-47bf-471d-8893-f0bbcfd04763 storage1 +C3N-03093.WGS.T.hg38 C3N-03093 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ae09d5fa-f718-4aa7-8279-237a7ef4f86f/ad027991-1119-4114-bd08-47af71ae25e5_wgs_gdc_realn.bam 83966814691 BAM hg38 ae09d5fa-f718-4aa7-8279-237a7ef4f86f storage1 C3N-03173.RNA-Seq.genomic.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76426ac0-bd81-434e-888f-977183463080/c722819e-b444-4681-997d-b35a3999e85c.rna_seq.genomic.gdc_realn.bam 7141432755 BAM hg38 76426ac0-bd81-434e-888f-977183463080 storage1 C3N-03173.RNA-Seq.genomic.T.hg38 C3N-03173 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd181591-5618-4149-a871-1a666fdeadf8/d23d21ff-cf41-4603-b2b1-81398d6cc07b.rna_seq.genomic.gdc_realn.bam 9052996549 BAM hg38 fd181591-5618-4149-a871-1a666fdeadf8 storage1 C3N-03173.WGS.N.hg38 C3N-03173 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1591620d-a9f6-4ee5-aa22-83e69bb03fe6/6e8cc228-a3ef-4e63-95c5-1aaa5976f987_wgs_gdc_realn.bam 100768403814 BAM hg38 1591620d-a9f6-4ee5-aa22-83e69bb03fe6 storage1 @@ -2838,6 +3239,8 @@ C3N-03190.WGS.N.hg38 C3N-03190 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-03190.WGS.T.hg38 C3N-03190 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/22c52e68-339b-49da-b516-746fa3a9f233/de5a663d-b85c-428b-8a08-ec9094d232af_wgs_gdc_realn.bam 186230169290 BAM hg38 22c52e68-339b-49da-b516-746fa3a9f233 storage1 C3N-03202.WGS.N.hg38 C3N-03202 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0542bf96-1726-465e-9fcb-a5ca090e2832/fab521c6-60cf-4a16-b32f-d066d19c3bc1_wgs_gdc_realn.bam 116730769917 BAM hg38 0542bf96-1726-465e-9fcb-a5ca090e2832 storage1 C3N-03202.WGS.T.hg38 C3N-03202 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a0aeb4f-7973-481f-9199-9dc63417f1e7/af32a993-92b4-4a50-87fb-b2f022d1ce71_wgs_gdc_realn.bam 93606358597 BAM hg38 5a0aeb4f-7973-481f-9199-9dc63417f1e7 storage1 +C3N-03204.WGS.N.hg38 C3N-03204 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8f12894-0bb9-41a9-a7a6-55661f980c0f/0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wgs_gdc_realn.bam 82872893991 BAM hg38 c8f12894-0bb9-41a9-a7a6-55661f980c0f storage1 +C3N-03204.WGS.T.hg38 C3N-03204 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d044a36-d468-4cf1-a198-790afa364cc7/eb7cddfe-2246-4542-8756-06d1b3f872d6_wgs_gdc_realn.bam 174943381681 BAM hg38 0d044a36-d468-4cf1-a198-790afa364cc7 storage1 C3N-03205.WGS.N.hg38 C3N-03205 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65e7d4fb-79c2-48bd-be83-b39a7b2c2c97/d7bd333c-9f0c-4452-9d22-21e5bf68b70b_wgs_gdc_realn.bam 156231455930 BAM hg38 65e7d4fb-79c2-48bd-be83-b39a7b2c2c97 storage1 C3N-03205.WGS.T.hg38 C3N-03205 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/453b3310-20f3-477b-bda2-f05feb6e41c0/13f1a500-dd71-4071-8a70-c4f72f4a6a29_wgs_gdc_realn.bam 176864868577 BAM hg38 453b3310-20f3-477b-bda2-f05feb6e41c0 storage1 C3N-03210.WGS.N.hg38 C3N-03210 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93a3331f-17c6-41a1-835d-e7e096c82f05/dd92c831-83c8-43a7-a2ae-6096acc30f44_wgs_gdc_realn.bam 105128649484 BAM hg38 93a3331f-17c6-41a1-835d-e7e096c82f05 storage1 @@ -2864,6 +3267,10 @@ C3N-03417.WGS.N.hg38 C3N-03417 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-03417.WGS.T.hg38 C3N-03417 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2515737f-f53d-4793-b276-f90008d741b3/262ce6f3-31fc-452e-929a-7787d1eb9b9d_wgs_gdc_realn.bam 114634757537 BAM hg38 2515737f-f53d-4793-b276-f90008d741b3 storage1 C3N-03420.WGS.N.hg38 C3N-03420 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1da5a6bd-2abc-4497-b00b-56113b9bbbce/12e9b5ca-92a6-44bb-8690-98dbfde28bda_wgs_gdc_realn.bam 84727109368 BAM hg38 1da5a6bd-2abc-4497-b00b-56113b9bbbce storage1 C3N-03420.WGS.T.hg38 C3N-03420 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49984296-ca82-423c-b56c-b21d86cf99be/2d6e8da1-ae06-469c-9c2b-9671e226351d_wgs_gdc_realn.bam 99360174916 BAM hg38 49984296-ca82-423c-b56c-b21d86cf99be storage1 +C3N-03424.WGS.N.hg38 C3N-03424 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e37d12d-79c3-4f73-9f13-fe7eded36fef/753658b1-7496-42f3-8340-18be0c34469e_wgs_gdc_realn.bam 91935283813 BAM hg38 7e37d12d-79c3-4f73-9f13-fe7eded36fef storage1 +C3N-03424.WGS.T.hg38 C3N-03424 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ea90a96c-0137-41da-94d4-e7e7a79700c7/8feea2f2-9e23-41cf-81c1-e7226f4908b9_wgs_gdc_realn.bam 101113720811 BAM hg38 ea90a96c-0137-41da-94d4-e7e7a79700c7 storage1 +C3N-03425.WGS.N.hg38 C3N-03425 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38ef9d92-ef9e-4137-8fd3-3476b37c258e/666767b5-d283-426e-ac0c-58d625bfbe52_wgs_gdc_realn.bam 95695120007 BAM hg38 38ef9d92-ef9e-4137-8fd3-3476b37c258e storage1 +C3N-03425.WGS.T.hg38 C3N-03425 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84e09932-2803-4c90-abf8-6d5c33f2eb5d/e01db198-b767-4cd5-8f06-2fd55989595b_wgs_gdc_realn.bam 80153819684 BAM hg38 84e09932-2803-4c90-abf8-6d5c33f2eb5d storage1 C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08b74ff4-9e65-4e99-b480-c85d929f9ee8/8930739b-4381-48ee-aaad-1229ea213c09.rna_seq.genomic.gdc_realn.bam 7908867436 BAM hg38 08b74ff4-9e65-4e99-b480-c85d929f9ee8 storage1 C3N-03426.WGS.N.hg38 C3N-03426 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c69c0d6e-891a-4d2b-9969-2983e1159e26/e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wgs_gdc_realn.bam 83027741213 BAM hg38 c69c0d6e-891a-4d2b-9969-2983e1159e26 storage1 C3N-03426.WGS.T.hg38 C3N-03426 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d4efe0ee-2aa5-488c-afe1-766c414d1f23/c426ad7d-ed66-442f-a1ce-2695de7d1033_wgs_gdc_realn.bam 172306829048 BAM hg38 d4efe0ee-2aa5-488c-afe1-766c414d1f23 storage1 @@ -2882,6 +3289,8 @@ C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal /storage1/f C3N-03440.RNA-Seq.genomic.T.hg38 C3N-03440 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8cb611b-a493-42b7-8be9-5d38a20ccc35/7d9277eb-45b2-40ac-81ac-7b788020952d.rna_seq.genomic.gdc_realn.bam 9809272543 BAM hg38 b8cb611b-a493-42b7-8be9-5d38a20ccc35 storage1 C3N-03440.WGS.N.hg38 C3N-03440 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8cece330-211e-49f6-a73c-7e189c52206c/c68f9ca9-8f35-4ff1-a751-cc6afeb6fc44_wgs_gdc_realn.bam 91303283275 BAM hg38 8cece330-211e-49f6-a73c-7e189c52206c storage1 C3N-03440.WGS.T.hg38 C3N-03440 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2c0b860c-475e-4ad5-a1be-b8c56a295a5b/0ae21f34-235f-468e-99c1-0c845c5f03ed_wgs_gdc_realn.bam 233491420625 BAM hg38 2c0b860c-475e-4ad5-a1be-b8c56a295a5b storage1 +C3N-03441.WGS.N.hg38 C3N-03441 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4a33c7d-e943-4289-bb44-762582ab397a/44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wgs_gdc_realn.bam 86480227712 BAM hg38 c4a33c7d-e943-4289-bb44-762582ab397a storage1 +C3N-03441.WGS.T.hg38 C3N-03441 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cdd04a83-a463-4d47-b3fb-c271eea57054/32dd99c7-d21a-4c9d-903f-b3b270af7c81_wgs_gdc_realn.bam 85389508692 BAM hg38 cdd04a83-a463-4d47-b3fb-c271eea57054 storage1 C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3338a3d1-7dfb-47eb-a5f9-d95dce211972/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ NA 3338a3d1-7dfb-47eb-a5f9-d95dce211972 storage1 C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 storage1 C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38086ca8-0290-41a9-8ed4-b7db18d6022f/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM hg38 38086ca8-0290-41a9-8ed4-b7db18d6022f storage1 @@ -2916,6 +3325,9 @@ C3N-03484.RNA-Seq.R1.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03484.RNA-Seq.R2.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f10504f3-e9a4-4e87-9cda-7b7d225d0b17/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ NA f10504f3-e9a4-4e87-9cda-7b7d225d0b17 storage1 C3N-03484.WGS.N.hg38 C3N-03484 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b795115-1bc6-4f21-96c6-53a3249ce701/258921c4-2923-423e-baae-2d7c9530872c_wgs_gdc_realn.bam 87200070473 BAM hg38 9b795115-1bc6-4f21-96c6-53a3249ce701 storage1 C3N-03484.WGS.T.hg38 C3N-03484 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e/fc55acf5-fe90-40c2-9d6f-665007d5bf46_wgs_gdc_realn.bam 62228038734 BAM hg38 aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e storage1 +C3N-03486.WGS.A.hg38 C3N-03486 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10d266c1-aecb-4e51-86fb-87586aa84cad/1813c1d8-24d0-42f9-b1ec-a216c3612018_wgs_gdc_realn.bam 83438404122 BAM hg38 10d266c1-aecb-4e51-86fb-87586aa84cad storage1 +C3N-03486.WGS.N.hg38 C3N-03486 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/32d31bb5-6c2c-4744-bac4-14a297cce04b/ee42812c-00ed-48dc-9368-dbaccf74827e_wgs_gdc_realn.bam 127477121903 BAM hg38 32d31bb5-6c2c-4744-bac4-14a297cce04b storage1 +C3N-03486.WGS.T.hg38 C3N-03486 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a31bc2a-344d-4be0-b0d3-76a24d5805d6/20d89cb5-a513-4faa-92f4-cf1f43cbae18_wgs_gdc_realn.bam 118204084087 BAM hg38 6a31bc2a-344d-4be0-b0d3-76a24d5805d6 storage1 C3N-03487.WGS.N.hg38 C3N-03487 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b20d74b7-52a9-4641-96ce-2c4eb414de31/5952f6d2-9a74-4404-9a00-1239265dc7d9_wgs_gdc_realn.bam 89691918518 BAM hg38 b20d74b7-52a9-4641-96ce-2c4eb414de31 storage1 C3N-03487.WGS.T.hg38 C3N-03487 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9c690a59-ba07-4375-909e-bac1d4c6314a/d2b8eb8f-f2c1-4d99-9a6b-fa1a752cfaad_wgs_gdc_realn.bam 87870775086 BAM hg38 9c690a59-ba07-4375-909e-bac1d4c6314a storage1 C3N-03488.WGS.N.hg38 C3N-03488 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1bfb4160-6b19-406d-948d-8205be21b509/5e7082da-c685-4905-98d7-a95507755ab3_wgs_gdc_realn.bam 92342619730 BAM hg38 1bfb4160-6b19-406d-948d-8205be21b509 storage1 @@ -2928,6 +3340,8 @@ C3N-03619.WGS.N.hg38 C3N-03619 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkows C3N-03619.WGS.T.hg38 C3N-03619 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3fbaebd7-ca3c-461a-bf46-ff6e9087abde/3d293f91-e107-43e8-a333-959746843119_wgs_gdc_realn.bam 95040697491 BAM hg38 3fbaebd7-ca3c-461a-bf46-ff6e9087abde storage1 C3N-03620.WGS.N.hg38 C3N-03620 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2697fc85-d00b-43cf-947e-52ef825d7970/ef04af76-839e-4c25-865a-2d38baa77ab2_wgs_gdc_realn.bam 103195179411 BAM hg38 2697fc85-d00b-43cf-947e-52ef825d7970 storage1 C3N-03620.WGS.T.hg38 C3N-03620 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/02fd5648-66ae-4a1c-be92-6105ee5055d2/62ff7145-4160-4cd7-9e57-b0e04f57bb72_wgs_gdc_realn.bam 114894719400 BAM hg38 02fd5648-66ae-4a1c-be92-6105ee5055d2 storage1 +C3N-03662.WGS.N.hg38 C3N-03662 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ced49b5-6daa-47a3-985c-0f1837fed681/eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wgs_gdc_realn.bam 88929296282 BAM hg38 2ced49b5-6daa-47a3-985c-0f1837fed681 storage1 +C3N-03662.WGS.T.hg38 C3N-03662 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a0611ae-7f51-44bc-9342-0eec4b3bed3b/aabb4a27-736d-45c1-b5d2-e22def394b17_wgs_gdc_realn.bam 79956157417 BAM hg38 8a0611ae-7f51-44bc-9342-0eec4b3bed3b storage1 C3N-03664.WGS.N.hg38 C3N-03664 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ce108c0f-e488-4b39-bd3d-1614c8e4e9f2/87278be5-880b-403e-96ef-4556bc85a926_wgs_gdc_realn.bam 97245040114 BAM hg38 ce108c0f-e488-4b39-bd3d-1614c8e4e9f2 storage1 C3N-03664.WGS.T.hg38 C3N-03664 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b1d07e06-bcf0-4001-932a-ddac51bbbfa3/3908eb72-303d-4316-b8a6-41f76e1bbed5_wgs_gdc_realn.bam 114025064950 BAM hg38 b1d07e06-bcf0-4001-932a-ddac51bbbfa3 storage1 C3N-03665.RNA-Seq.genomic.T.hg38 C3N-03665 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e038a4e-3ca3-4228-9676-153817601629/92b32d9a-f817-4164-a015-4e5fcc89333e.rna_seq.genomic.gdc_realn.bam 6276087211 BAM hg38 9e038a4e-3ca3-4228-9676-153817601629 storage1 @@ -3007,18 +3421,32 @@ C3N-03840.WGS.N.hg38 C3N-03840 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski C3N-03840.WGS.T.hg38 C3N-03840 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab3c777a-1f53-4860-ae9d-6c8cd0492743/c0d6a979-077e-4b15-b478-8ab5444bf3d6_wgs_gdc_realn.bam 211413009553 BAM hg38 ab3c777a-1f53-4860-ae9d-6c8cd0492743 storage1 C3N-03841.WGS.N.hg38 C3N-03841 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/155c0d7b-51d2-46e7-8280-b0878a0a4caf/33799056-6d57-49ae-b723-1285c31a3dbf_wgs_gdc_realn.bam 107632541446 BAM hg38 155c0d7b-51d2-46e7-8280-b0878a0a4caf storage1 C3N-03841.WGS.T.hg38 C3N-03841 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/18012290-35ae-4a1f-9647-c538c7122013/58fab107-27f0-4322-a1a5-b40044b7dc29_wgs_gdc_realn.bam 108837277495 BAM hg38 18012290-35ae-4a1f-9647-c538c7122013 storage1 +C3N-03848.WGS.N.hg38 C3N-03848 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4a26c06-a33e-458c-8869-1a9718e31f69/0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wgs_gdc_realn.bam 80844526203 BAM hg38 b4a26c06-a33e-458c-8869-1a9718e31f69 storage1 +C3N-03848.WGS.T.hg38 C3N-03848 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/713b6dc0-5c8a-408c-abd8-60f7a4848da6/db22b708-9f28-46e1-a158-e680c16abfc9_wgs_gdc_realn.bam 89612161267 BAM hg38 713b6dc0-5c8a-408c-abd8-60f7a4848da6 storage1 C3N-03849.WGS.N.hg38 C3N-03849 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e7c44a1-8516-4b2b-86d5-43069de82b91/42a540a5-7464-4132-81f2-fe99cf58a436_wgs_gdc_realn.bam 98292420883 BAM hg38 9e7c44a1-8516-4b2b-86d5-43069de82b91 storage1 C3N-03849.WGS.T.hg38 C3N-03849 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0d4ba94c-58a3-4af7-8b4a-fe8435186789/58d317f1-0935-498a-8d5f-b16499308ab4_wgs_gdc_realn.bam 96230027435 BAM hg38 0d4ba94c-58a3-4af7-8b4a-fe8435186789 storage1 +C3N-03851.WGS.N.hg38 C3N-03851 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/36b8ae23-85fa-4963-9019-c14b2f668b7a/07144067-5157-4e9c-87e6-ae39734624f8_wgs_gdc_realn.bam 89830831900 BAM hg38 36b8ae23-85fa-4963-9019-c14b2f668b7a storage1 +C3N-03851.WGS.T.hg38 C3N-03851 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/defc1632-1616-47aa-a6a3-2b94efaca2e2/3b453860-03bc-4bb3-a378-8bc60b00762e_wgs_gdc_realn.bam 88782837411 BAM hg38 defc1632-1616-47aa-a6a3-2b94efaca2e2 storage1 C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7e472753-6c2f-443b-bdcf-53f1c40dc65f/dd60cb21-c8fe-4a74-81f1-7103e76c31be.rna_seq.genomic.gdc_realn.bam 6328770144 BAM hg38 7e472753-6c2f-443b-bdcf-53f1c40dc65f storage1 C3N-03853.WGS.N.hg38 C3N-03853 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f303165c-97a2-41a3-9c6c-b8f1478dab75/d9f1ee6b-0467-460b-b46d-ccd105ebb600_wgs_gdc_realn.bam 100567856315 BAM hg38 f303165c-97a2-41a3-9c6c-b8f1478dab75 storage1 C3N-03853.WGS.T.hg38 C3N-03853 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adef148b-80f0-45d9-be9a-4740003847b2/03484d73-88a2-4b7d-974a-cca90dc31ce4_wgs_gdc_realn.bam 197407346114 BAM hg38 adef148b-80f0-45d9-be9a-4740003847b2 storage1 +C3N-03875.WGS.N.hg38 C3N-03875 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/934b36e1-cf74-4fd1-b311-110d4eafc244/d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wgs_gdc_realn.bam 78864452471 BAM hg38 934b36e1-cf74-4fd1-b311-110d4eafc244 storage1 +C3N-03875.WGS.T.hg38 C3N-03875 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c14972e-0168-4d6f-83c3-b4ab309992c1/c144c286-a208-4b0e-8a31-5b40c4c61906_wgs_gdc_realn.bam 77202884244 BAM hg38 1c14972e-0168-4d6f-83c3-b4ab309992c1 storage1 C3N-03876.WGS.N.hg38 C3N-03876 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/79e95feb-c35d-4032-a395-648687bf3cfc/d3ac90d8-df39-473f-91a9-f212874fd4d9_wgs_gdc_realn.bam 89418751643 BAM hg38 79e95feb-c35d-4032-a395-648687bf3cfc storage1 C3N-03876.WGS.T.hg38 C3N-03876 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b82d4f5-1a87-4fb9-9f4a-5a3157441f0d/f4e27722-8239-4840-8e12-5dbb5e87ac8c_wgs_gdc_realn.bam 106770635832 BAM hg38 4b82d4f5-1a87-4fb9-9f4a-5a3157441f0d storage1 +C3N-03877.WGS.N.hg38 C3N-03877 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ad14321-de83-441c-aff2-20b320e00aac/32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wgs_gdc_realn.bam 80948441806 BAM hg38 9ad14321-de83-441c-aff2-20b320e00aac storage1 +C3N-03877.WGS.T.hg38 C3N-03877 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/27f4794e-fdd1-47d1-9052-0aac0c9e7600/2603d898-8eb1-4f1d-93cb-c401918fb57f_wgs_gdc_realn.bam 98401442349 BAM hg38 27f4794e-fdd1-47d1-9052-0aac0c9e7600 storage1 C3N-03878.WGS.N.hg38 C3N-03878 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e48d1101-0622-4b77-95ea-97430b2c5459/5a965a42-f61f-4e27-81b4-d4ecd3e067b4_wgs_gdc_realn.bam 122543644771 BAM hg38 e48d1101-0622-4b77-95ea-97430b2c5459 storage1 C3N-03878.WGS.T.hg38 C3N-03878 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2de809c0-a130-4a4e-a81d-f2b880c66d77/0533759f-76d9-4397-b4c1-adf72f1b694e_wgs_gdc_realn.bam 114607417133 BAM hg38 2de809c0-a130-4a4e-a81d-f2b880c66d77 storage1 +C3N-03880.WGS.N.hg38 C3N-03880 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49dc856d-7979-4696-b132-020eb7d68cbb/2b466dd6-459a-4dde-9411-28af3eaca5d5_wgs_gdc_realn.bam 80763851740 BAM hg38 49dc856d-7979-4696-b132-020eb7d68cbb storage1 +C3N-03880.WGS.T.hg38 C3N-03880 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254381d1-5844-4838-ac8b-b772d38b025b/95f547e8-33a3-489f-a890-bea3e46f4e7c_wgs_gdc_realn.bam 78681906049 BAM hg38 254381d1-5844-4838-ac8b-b772d38b025b storage1 +C3N-03882.WGS.N.hg38 C3N-03882 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/09beeeda-3425-4b24-9b16-a40d53dbb759/08b8360a-6655-4096-bfc9-46dab9751926_wgs_gdc_realn.bam 89442085514 BAM hg38 09beeeda-3425-4b24-9b16-a40d53dbb759 storage1 +C3N-03882.WGS.T.hg38 C3N-03882 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a295001-3585-47ac-a5cd-7253c8d4dc16/972d4ce3-7e18-4cec-a086-ce898371b25b_wgs_gdc_realn.bam 85416244306 BAM hg38 0a295001-3585-47ac-a5cd-7253c8d4dc16 storage1 C3N-03884.RNA-Seq.genomic.T.hg38 C3N-03884 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92df6115-fec4-4c7c-976c-cc9e1365921c/07a73190-c4a0-4de2-8664-ccdb6b6095f0.rna_seq.genomic.gdc_realn.bam 7514515066 BAM hg38 92df6115-fec4-4c7c-976c-cc9e1365921c storage1 C3N-03884.WGS.N.hg38 C3N-03884 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/94c56c37-9798-4a89-9078-f02d4a2f44d4/5ba8387a-5795-4b55-8f83-9d3440b657f2_wgs_gdc_realn.bam 81522284921 BAM hg38 94c56c37-9798-4a89-9078-f02d4a2f44d4 storage1 C3N-03884.WGS.T.hg38 C3N-03884 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3693605-b4a0-4222-88a6-eadb5a249e90/87297bf5-8869-4ea2-9dd3-976928552d5c_wgs_gdc_realn.bam 232452383508 BAM hg38 b3693605-b4a0-4222-88a6-eadb5a249e90 storage1 +C3N-03886.WGS.N.hg38 C3N-03886 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2718410a-0a35-41b7-81e0-c5ddc8fa8c31/b3179798-a286-4505-b913-4b922716565c_wgs_gdc_realn.bam 88759881829 BAM hg38 2718410a-0a35-41b7-81e0-c5ddc8fa8c31 storage1 +C3N-03886.WGS.T.hg38 C3N-03886 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12a14574-1d43-4e12-8151-71a84ce1f0d2/bc1a4b77-dcb6-4ee6-8c9f-d98f04caed85_wgs_gdc_realn.bam 98556067229 BAM hg38 12a14574-1d43-4e12-8151-71a84ce1f0d2 storage1 C3N-03888.WGS.N.hg38 C3N-03888 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87a40420-6df6-4d45-a135-da580355a587/86c78340-b7f1-4b1d-928e-86ce8f3894b3_wgs_gdc_realn.bam 131686408082 BAM hg38 87a40420-6df6-4d45-a135-da580355a587 storage1 C3N-03888.WGS.T.hg38 C3N-03888 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d28c6b8-2099-480f-adc0-2b9a24b400a6/38209b0e-a918-4b88-a088-b73ba722a869_wgs_gdc_realn.bam 96431595489 BAM hg38 2d28c6b8-2099-480f-adc0-2b9a24b400a6 storage1 C3N-03889.WGS.N.hg38 C3N-03889 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41ed5788-2219-4055-9e2e-c432891610c3/f7210b31-9dd5-48f5-b101-dd58e93f7dc0_wgs_gdc_realn.bam 102403966142 BAM hg38 41ed5788-2219-4055-9e2e-c432891610c3 storage1 @@ -3070,13 +3498,21 @@ C3N-04113.WGS.T.hg38 C3N-04113 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active C3N-04119.RNA-Seq.genomic.T.hg38 C3N-04119 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a4ee55bb-1466-47e4-a747-61c1c68d0f4e/786b9e66-75ef-42c3-b9a5-7e795ed7101a.rna_seq.genomic.gdc_realn.bam 8113496299 BAM hg38 a4ee55bb-1466-47e4-a747-61c1c68d0f4e storage1 C3N-04119.WGS.N.hg38 C3N-04119 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b8610c14-73e9-485b-9f23-36594cc52aaf/bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wgs_gdc_realn.bam 103986103989 BAM hg38 b8610c14-73e9-485b-9f23-36594cc52aaf storage1 C3N-04119.WGS.T.hg38 C3N-04119 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1becad3b-33c5-4bad-b7ee-20ee2603f398/eb856f0f-f9f8-4ef3-bcd7-824049ed9109_wgs_gdc_realn.bam 213343063223 BAM hg38 1becad3b-33c5-4bad-b7ee-20ee2603f398 storage1 +C3N-04124.WGS.N.hg38 C3N-04124 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f83f046-a892-448f-92ff-0d84f2d9d9c3/161e1a4d-b9b1-42fe-8399-2bc263936720_wgs_gdc_realn.bam 87586410762 BAM hg38 9f83f046-a892-448f-92ff-0d84f2d9d9c3 storage1 +C3N-04124.WGS.T.hg38 C3N-04124 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/158d370c-a4a4-480e-bd8a-ee046d107d3b/0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wgs_gdc_realn.bam 90974854821 BAM hg38 158d370c-a4a4-480e-bd8a-ee046d107d3b storage1 C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0818c9a1-d1ce-4b6d-95c5-760080f9b113/6872bf89-41dc-46b3-a3a8-f494769aac20.rna_seq.genomic.gdc_realn.bam 10205301549 BAM hg38 0818c9a1-d1ce-4b6d-95c5-760080f9b113 storage1 C3N-04126.WGS.N.hg38 C3N-04126 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e6899c13-9355-4f15-92c0-af79b70fcdf6/7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wgs_gdc_realn.bam 88803296322 BAM hg38 e6899c13-9355-4f15-92c0-af79b70fcdf6 storage1 C3N-04126.WGS.T.hg38 C3N-04126 PDA WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad71fa8c-a7d8-474b-8218-8ecbb1bdf3d7/cda94bf3-c5f3-49b7-89ad-e31cf301f12d_wgs_gdc_realn.bam 207232661003 BAM hg38 ad71fa8c-a7d8-474b-8218-8ecbb1bdf3d7 storage1 +C3N-04127.WGS.N.hg38 C3N-04127 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e52b65fb-1537-4b1e-830c-ae5ca45be4dc/f41b6b00-bcda-49b7-81c6-5660d2da8d56_wgs_gdc_realn.bam 79207707961 BAM hg38 e52b65fb-1537-4b1e-830c-ae5ca45be4dc storage1 +C3N-04127.WGS.T.hg38 C3N-04127 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ec95f53-5eda-456d-9d2c-220d7ec82c08/c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wgs_gdc_realn.bam 94280348655 BAM hg38 3ec95f53-5eda-456d-9d2c-220d7ec82c08 storage1 C3N-04152.WGS.N.hg38 C3N-04152 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cf5b4b80-e867-49b7-b668-6791a9c78a12/1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wgs_gdc_realn.bam 114941800553 BAM hg38 cf5b4b80-e867-49b7-b668-6791a9c78a12 storage1 C3N-04152.WGS.T.hg38 C3N-04152 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2f55c32e-f1ca-46a4-90b4-57bc4ad0b61e/a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wgs_gdc_realn.bam 96017317076 BAM hg38 2f55c32e-f1ca-46a4-90b4-57bc4ad0b61e storage1 +C3N-04155.WGS.N.hg38 C3N-04155 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cad85f10-c277-4559-99fb-32517840e29a/4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wgs_gdc_realn.bam 77919095694 BAM hg38 cad85f10-c277-4559-99fb-32517840e29a storage1 +C3N-04155.WGS.T.hg38 C3N-04155 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bcc15f0-0132-4b03-9ba4-b134b6b7bb34/78718394-bc16-4c02-b49f-511db21da76c_wgs_gdc_realn.bam 88791753543 BAM hg38 8bcc15f0-0132-4b03-9ba4-b134b6b7bb34 storage1 C3N-04157.WGS.N.hg38 C3N-04157 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84153e0f-0b09-40db-b5b7-d65fe981258f/fee32560-8cce-466c-abf6-1a732c5ed2a0_wgs_gdc_realn.bam 91231808613 BAM hg38 84153e0f-0b09-40db-b5b7-d65fe981258f storage1 C3N-04157.WGS.T.hg38 C3N-04157 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa55fcc0-ac46-40cc-ad0f-56302e7ac4c2/58547ca2-ad3a-435c-8475-e89753be99a7_wgs_gdc_realn.bam 86665697608 BAM hg38 fa55fcc0-ac46-40cc-ad0f-56302e7ac4c2 storage1 +C3N-04162.WGS.N.hg38 C3N-04162 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a7829cf-beff-4e1f-9437-863117642312/6e1ee97c-2ad3-4780-832a-95fa396a62d4_wgs_gdc_realn.bam 82677184151 BAM hg38 8a7829cf-beff-4e1f-9437-863117642312 storage1 +C3N-04162.WGS.T.hg38 C3N-04162 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/544123c3-f2e2-467a-a08a-321eee4abf75/fb4d7e5b-3eb4-4172-946e-1c7969324651_wgs_gdc_realn.bam 83365877457 BAM hg38 544123c3-f2e2-467a-a08a-321eee4abf75 storage1 C3N-04168.WGS.N.hg38 C3N-04168 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb82aeb6-da15-4bec-9405-137957c2cc81/0d3002e7-e715-44ac-9774-c07ee75d5d0a_wgs_gdc_realn.bam 120071170304 BAM hg38 bb82aeb6-da15-4bec-9405-137957c2cc81 storage1 C3N-04168.WGS.T.hg38 C3N-04168 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb8490da-a68f-4adf-9bf4-d81488529100/3fcfbdc6-c537-4fc6-a54c-b0fdaae07128_wgs_gdc_realn.bam 98024091726 BAM hg38 bb8490da-a68f-4adf-9bf4-d81488529100 storage1 C3N-04173.WGS.N.hg38 C3N-04173 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ad93279-c460-4e39-8791-0e83339a9121/298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wgs_gdc_realn.bam 110496917927 BAM hg38 3ad93279-c460-4e39-8791-0e83339a9121 storage1