diff --git a/BamMap/MGI.BamMap.dat b/BamMap/MGI.BamMap.dat index 1936b63..078db0e 100644 --- a/BamMap/MGI.BamMap.dat +++ b/BamMap/MGI.BamMap.dat @@ -1,12 +1,17 @@ # sample_name case disease experimental_strategy sample_type data_path filesize data_format reference UUID system +11LU013.WGS.N.hg38 11LU013 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//89783e46-3269-42ad-8b4a-6b3de3fd47dc/e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 96565337883 BAM hg38 89783e46-3269-42ad-8b4a-6b3de3fd47dc MGI 11LU013.WXS.N.hg38 11LU013 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/91f48c07-d1a5-479b-9abe-06ec6218a849/e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 45154785185 BAM hg38 91f48c07-d1a5-479b-9abe-06ec6218a849 MGI 11LU013.WXS.T.hg38 11LU013 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/54a37bf4-20a9-4e4d-ae09-567a67e5ff3d/3e34414d-9614-4ad3-91e6-877b3758b5a1_gdc_realn.bam 49316216018 BAM hg38 54a37bf4-20a9-4e4d-ae09-567a67e5ff3d MGI +11LU016.WGS.N.hg38 11LU016 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e7d08220-93aa-4182-a19f-6ea9267b6ce8/b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 96485032091 BAM hg38 e7d08220-93aa-4182-a19f-6ea9267b6ce8 MGI 11LU016.WXS.N.hg38 11LU016 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4b4f7205-7616-43b0-a170-3240eadf0681/b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 36299521229 BAM hg38 4b4f7205-7616-43b0-a170-3240eadf0681 MGI 11LU016.WXS.T.hg38 11LU016 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2bc9c65b-3d97-4f0c-b76e-decfcbd14e77/e99345ff-01f8-4063-b178-d8e86181288c_gdc_realn.bam 35226439856 BAM hg38 2bc9c65b-3d97-4f0c-b76e-decfcbd14e77 MGI +11LU022.WGS.N.hg38 11LU022 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//43393979-50c9-44e3-b75c-6792b1a20300/db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 95326322818 BAM hg38 43393979-50c9-44e3-b75c-6792b1a20300 MGI 11LU022.WXS.N.hg38 11LU022 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/afd56e8e-f82d-4fb1-b019-2b032c763b85/db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 40504340932 BAM hg38 afd56e8e-f82d-4fb1-b019-2b032c763b85 MGI 11LU022.WXS.T.hg38 11LU022 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8466e786-5981-421d-ab9a-a6553c5c8285/1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 38175893642 BAM hg38 8466e786-5981-421d-ab9a-a6553c5c8285 MGI +11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//051bf441-b940-4e4b-95a9-86f8f892090c/b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM hg38 051bf441-b940-4e4b-95a9-86f8f892090c MGI 11LU035.WXS.N.hg38 11LU035 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7ac15e13-9ad5-43ec-9ab4-85844b7d218b/b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 58600852881 BAM hg38 7ac15e13-9ad5-43ec-9ab4-85844b7d218b MGI 11LU035.WXS.T.hg38 11LU035 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2e9b2402-dc62-4923-8447-f78414eee9d8/e9ce19f4-5e32-43dd-91d0-5535f0ebb2c9_gdc_realn.bam 38318471577 BAM hg38 2e9b2402-dc62-4923-8447-f78414eee9d8 MGI +C3L-00001.WGS.N.hg38 C3L-00001 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//1d301dc5-ebb2-47e0-9a9f-e31ed41b4542/2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 202924825766 BAM hg38 1d301dc5-ebb2-47e0-9a9f-e31ed41b4542 MGI C3L-00001.WXS.A.hg38 C3L-00001 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a4163684-cf9c-466f-ac3f-5a591ce9e9b9/51f174e6-1be7-4819-9339-b95193c935bd_wxs_gdc_realn.bam 55218252573 BAM hg38 a4163684-cf9c-466f-ac3f-5a591ce9e9b9 MGI C3L-00001.WXS.N.hg38 C3L-00001 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/df589c6d-37e7-4878-9453-ded1a3ca5e17/2595f8ca-ef17-4bf0-984d-27caaa8ee608_gdc_realn.bam 39542030390 BAM hg38 df589c6d-37e7-4878-9453-ded1a3ca5e17 MGI C3L-00001.WXS.T.hg38 C3L-00001 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a0e38199-402a-4ae1-b00d-ec9c67dd51df/1cc7a20f-b05e-4661-95ec-399b3080a02b_gdc_realn.bam 43659332939 BAM hg38 a0e38199-402a-4ae1-b00d-ec9c67dd51df MGI @@ -18,6 +23,7 @@ C3L-00006.WXS.N.hg38 C3L-00006 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cpta C3L-00006.WXS.T.hg38 C3L-00006 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/96c07fe5-d530-4c9b-92ce-49408feacb2c/d9975c5f-288d-417d-bdb3-f490d9a36401_gdc_realn.bam 46442577649 BAM hg38 96c07fe5-d530-4c9b-92ce-49408feacb2c MGI C3L-00008.WXS.N.hg38 C3L-00008 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/90257622-6bcc-43e7-a04f-f7397975d038/243bfb3c-d06b-4de5-a6c3-7fa7e2c5fb74_gdc_realn.bam 39779821401 BAM hg38 90257622-6bcc-43e7-a04f-f7397975d038 MGI C3L-00008.WXS.T.hg38 C3L-00008 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4501f315-bf8f-4611-821a-797ef180e25b/f6924a26-a14f-45a3-b4bd-7a4592d34065_gdc_realn.bam 40349955110 BAM hg38 4501f315-bf8f-4611-821a-797ef180e25b MGI +C3L-00009.WGS.N.hg38 C3L-00009 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//8a906d7e-9577-4d0e-a546-f1eff1300fd8/0d13c28d-fc75-4de2-9890-036fdd5dab0f_gdc_realn.bam 99973734904 BAM hg38 8a906d7e-9577-4d0e-a546-f1eff1300fd8 MGI C3L-00009.WXS.A.hg38 C3L-00009 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/794e4ba8-ea79-4fc4-b80d-b911e017d7d0/a1e4e390-bc4b-4cfa-9c0d-8070c50822d2_wxs_gdc_realn.bam 45083741987 BAM hg38 794e4ba8-ea79-4fc4-b80d-b911e017d7d0 MGI C3L-00009.WXS.N.hg38 C3L-00009 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/34f2e628-bdf8-4762-8c67-cd5ae09a1d46/0d13c28d-fc75-4de2-9890-036fdd5dab0f_gdc_realn.bam 59795676584 BAM hg38 34f2e628-bdf8-4762-8c67-cd5ae09a1d46 MGI C3L-00009.WXS.T.hg38 C3L-00009 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8cc90cf4-2598-4a6c-b064-5670df7d2545/2889a82c-e8b3-475e-9285-1e103003debb_gdc_realn.bam 40869302911 BAM hg38 8cc90cf4-2598-4a6c-b064-5670df7d2545 MGI @@ -55,12 +61,15 @@ C3L-00035.WXS.T.hg38 C3L-00035 SAR WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC C3L-00079.WXS.A.hg38 C3L-00079 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cb58ee45-9b1e-44f0-9b4e-da652894e14d/66a0c38b-0783-488a-946b-85127b719408_wxs_gdc_realn.bam 43433999078 BAM hg38 cb58ee45-9b1e-44f0-9b4e-da652894e14d MGI C3L-00079.WXS.N.hg38 C3L-00079 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/619c5835-bcd0-48e0-9b4c-742a607382e9/86c228d6-3005-46fd-937d-5a773191167e_gdc_realn.bam 48126576471 BAM hg38 619c5835-bcd0-48e0-9b4c-742a607382e9 MGI C3L-00079.WXS.T.hg38 C3L-00079 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a0b56912-d3f5-43c6-b105-47fb7e936580/edc8a006-f1d6-44c5-a097-02792f48391c_gdc_realn.bam 40786462717 BAM hg38 a0b56912-d3f5-43c6-b105-47fb7e936580 MGI +C3L-00080.WGS.N.hg38 C3L-00080 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//9b0719f5-2549-466c-892c-df316fff7fe0/0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 200634122075 BAM hg38 9b0719f5-2549-466c-892c-df316fff7fe0 MGI C3L-00080.WXS.A.hg38 C3L-00080 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b368558a-16fa-471a-8260-ec289700b984/367111cb-498a-48db-8c12-5fb198c1f435_wxs_gdc_realn.bam 52841811322 BAM hg38 b368558a-16fa-471a-8260-ec289700b984 MGI C3L-00080.WXS.N.hg38 C3L-00080 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9412b5eb-4f3d-4c16-9901-fac1b339da5f/0884b190-2818-4687-9507-a6f34883c932_gdc_realn.bam 47252445993 BAM hg38 9412b5eb-4f3d-4c16-9901-fac1b339da5f MGI C3L-00080.WXS.T.hg38 C3L-00080 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/af55e269-a75d-4392-9d5d-96faf2c0e04e/402105a0-263d-474b-b32d-11a7ad92150f_gdc_realn.bam 49069409933 BAM hg38 af55e269-a75d-4392-9d5d-96faf2c0e04e MGI +C3L-00081.WGS.N.hg38 C3L-00081 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4571e0d7-4c43-4ff8-aad2-f39bc4964cdf/5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 191650804479 BAM hg38 4571e0d7-4c43-4ff8-aad2-f39bc4964cdf MGI C3L-00081.WXS.A.hg38 C3L-00081 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/97148966-d2a9-414e-900b-7016bedf7075/48433c5e-7746-4ae8-888a-3c9390b460d4_wxs_gdc_realn.bam 33131414600 BAM hg38 97148966-d2a9-414e-900b-7016bedf7075 MGI C3L-00081.WXS.N.hg38 C3L-00081 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ec948c00-910b-4c7b-82a7-4d209d377116/5e04faec-58e8-403f-942b-74e8c0053805_gdc_realn.bam 39312702311 BAM hg38 ec948c00-910b-4c7b-82a7-4d209d377116 MGI C3L-00081.WXS.T.hg38 C3L-00081 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/16477a75-08b9-4c77-9117-30dbb59d9f84/499d2ebb-679e-4720-8b86-3c989769d905_gdc_realn.bam 52293773887 BAM hg38 16477a75-08b9-4c77-9117-30dbb59d9f84 MGI +C3L-00083.WGS.N.hg38 C3L-00083 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7ac479d6-5d12-4169-9908-a789d8fbe546/2eddaefa-786d-42e4-ab02-e94a893a9441_wgs_gdc_realn.bam 97867709363 BAM hg38 7ac479d6-5d12-4169-9908-a789d8fbe546 MGI C3L-00083.WXS.A.hg38 C3L-00083 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fe5bbd2e-0ea2-423b-8d37-55760086ffd7/6aa4d1fe-35eb-4db1-9427-3398beedae1d_wxs_gdc_realn.bam 41385747481 BAM hg38 fe5bbd2e-0ea2-423b-8d37-55760086ffd7 MGI C3L-00083.WXS.N.hg38 C3L-00083 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eb54888f-3169-491f-a385-0bbe85db98b3/2eddaefa-786d-42e4-ab02-e94a893a9441_wxs_gdc_realn.bam 51977545772 BAM hg38 eb54888f-3169-491f-a385-0bbe85db98b3 MGI C3L-00083.WXS.T.hg38 C3L-00083 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/abcf3517-4f77-450e-8bbd-bd7bb7f40077/560018e3-da42-4581-b77d-db661cb3a7b4_wxs_gdc_realn.bam 38196988685 BAM hg38 abcf3517-4f77-450e-8bbd-bd7bb7f40077 MGI @@ -73,12 +82,15 @@ C3L-00088.WXS.N.hg38 C3L-00088 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3L-00088.WXS.T.hg38 C3L-00088 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cd13d733-70d0-49de-bdb2-98e9ccf074af/6d73cfe8-aedb-4984-b7a3-66a9a027d712_gdc_realn.bam 34015262331 BAM hg38 cd13d733-70d0-49de-bdb2-98e9ccf074af MGI C3L-00090.WXS.N.hg38 C3L-00090 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d74368b7-1924-4c44-8079-1858f7ebf85a/7959d3f4-80cb-45f5-99ea-248ac2059877_gdc_realn.bam 48271962279 BAM hg38 d74368b7-1924-4c44-8079-1858f7ebf85a MGI C3L-00090.WXS.T.hg38 C3L-00090 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/055e85d1-c36d-4fbd-b578-4fd23e81b9e5/cfc5140e-1c15-4b9f-83e0-5613e427870e_gdc_realn.bam 49173156327 BAM hg38 055e85d1-c36d-4fbd-b578-4fd23e81b9e5 MGI +C3L-00093.WGS.N.hg38 C3L-00093 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//325d2af5-9bd2-48e1-8802-25903c6b719f/75952a65-9864-45c6-9117-68c289bc412c_wgs_gdc_realn.bam 81332174860 BAM hg38 325d2af5-9bd2-48e1-8802-25903c6b719f MGI C3L-00093.WXS.A.hg38 C3L-00093 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/14db3d62-2a98-4396-829c-04db7ab6e4df/957f5e10-59a8-4402-8c03-2fbfe508f403_wxs_gdc_realn.bam 38433553922 BAM hg38 14db3d62-2a98-4396-829c-04db7ab6e4df MGI C3L-00093.WXS.N.hg38 C3L-00093 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2f059402-756c-4b0a-a775-11bec5d96a98/75952a65-9864-45c6-9117-68c289bc412c_wxs_gdc_realn.bam 34066825094 BAM hg38 2f059402-756c-4b0a-a775-11bec5d96a98 MGI C3L-00093.WXS.T.hg38 C3L-00093 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4e567f18-72ac-4b7a-93c2-041cd80db908/c737a9df-b448-4aa0-a819-38fd00f06313_wxs_gdc_realn.bam 58914624238 BAM hg38 4e567f18-72ac-4b7a-93c2-041cd80db908 MGI +C3L-00094.WGS.N.hg38 C3L-00094 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//84077077-8bf8-4370-bea5-afd475908684/ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 209201510449 BAM hg38 84077077-8bf8-4370-bea5-afd475908684 MGI C3L-00094.WXS.A.hg38 C3L-00094 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1d87f398-b674-4c45-a1ef-8dff8e21a6af/691dec7d-c8ae-4f74-95e4-461cf442ac1d_wxs_gdc_realn.bam 49609560684 BAM hg38 1d87f398-b674-4c45-a1ef-8dff8e21a6af MGI C3L-00094.WXS.N.hg38 C3L-00094 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/328bd359-d972-4bbc-9fc7-541d883db07d/ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 39049896925 BAM hg38 328bd359-d972-4bbc-9fc7-541d883db07d MGI C3L-00094.WXS.T.hg38 C3L-00094 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3f162dd1-53ca-4295-ad07-cd7a796d8d3d/f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 45847939308 BAM hg38 3f162dd1-53ca-4295-ad07-cd7a796d8d3d MGI +C3L-00095.WGS.N.hg38 C3L-00095 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//fd525ceb-bac6-4283-9c24-73776b2451f6/758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 197918081619 BAM hg38 fd525ceb-bac6-4283-9c24-73776b2451f6 MGI C3L-00095.WXS.A.hg38 C3L-00095 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b5f75ffd-bdff-4255-bd17-74dd003f190e/8fe04429-c7db-4162-aad6-a408b805aa6d_wxs_gdc_realn.bam 103305046426 BAM hg38 b5f75ffd-bdff-4255-bd17-74dd003f190e MGI C3L-00095.WXS.N.hg38 C3L-00095 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e2c6dc65-722d-41fb-91ef-b4b968e0a846/758bb858-fb40-4be5-b69f-a1c4bc0f8f98_gdc_realn.bam 52870668721 BAM hg38 e2c6dc65-722d-41fb-91ef-b4b968e0a846 MGI C3L-00095.WXS.T.hg38 C3L-00095 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/114678a6-bb63-4c25-b546-1b595c70b199/e0e4eca2-5f90-4ae4-924f-4e5548af49b1_gdc_realn.bam 42441934601 BAM hg38 114678a6-bb63-4c25-b546-1b595c70b199 MGI @@ -114,12 +126,14 @@ C3L-00137.WXS.N.hg38 C3L-00137 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cpta C3L-00137.WXS.T.hg38 C3L-00137 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/24d0c8fa-2bb4-465b-96f7-680566a44c2f/6b8b5928-258f-4f93-9e52-516db4562c2d_gdc_realn.bam 46556851624 BAM hg38 24d0c8fa-2bb4-465b-96f7-680566a44c2f MGI C3L-00139.WXS.N.hg38 C3L-00139 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3e395930-3001-49bf-95ca-7c96e0204b57/f72de443-e927-4cbf-a81d-3c906af657db_gdc_realn.bam 36915211881 BAM hg38 3e395930-3001-49bf-95ca-7c96e0204b57 MGI C3L-00139.WXS.T.hg38 C3L-00139 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fb433f9d-bb8a-41e3-a5a0-997b16abd0fe/41bf607b-596b-4c43-9cd5-f245cf6e15fe_gdc_realn.bam 53476418428 BAM hg38 fb433f9d-bb8a-41e3-a5a0-997b16abd0fe MGI +C3L-00140.WGS.N.hg38 C3L-00140 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//0fafff35-2e4c-4f6e-8140-d839961a8379/d47d42c5-c6c1-4788-b66f-9e4eb2854c67_gdc_realn.bam 241077411568 BAM hg38 0fafff35-2e4c-4f6e-8140-d839961a8379 MGI C3L-00140.WXS.A.hg38 C3L-00140 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0c0313ce-2eb6-4ef7-b0d1-bd56323aba09/65540895-ccaa-40a2-ae4d-912f37356c1a_wxs_gdc_realn.bam 43647007086 BAM hg38 0c0313ce-2eb6-4ef7-b0d1-bd56323aba09 MGI C3L-00140.WXS.N.hg38 C3L-00140 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fe45ef91-129f-46ac-93b0-35a2c5dcd72d/d47d42c5-c6c1-4788-b66f-9e4eb2854c67_gdc_realn.bam 44171055452 BAM hg38 fe45ef91-129f-46ac-93b0-35a2c5dcd72d MGI C3L-00140.WXS.T.hg38 C3L-00140 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/0e90cce2-5f92-42fb-a908-20009bbcd4a0/abd00977-e5b2-4ea2-9840-a0cbcc03e13c_gdc_realn.bam 40943771958 BAM hg38 0e90cce2-5f92-42fb-a908-20009bbcd4a0 MGI C3L-00143.WXS.N.hg38 C3L-00143 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/937a94b6-f52b-4bd0-a1e5-32b1d98e41ca/c043b586-b3c2-4a81-a4f3-ccc22a2ec00d_gdc_realn.bam 44699785670 BAM hg38 937a94b6-f52b-4bd0-a1e5-32b1d98e41ca MGI C3L-00143.WXS.T.hg38 C3L-00143 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b44bbc36-16b3-431f-878e-c2f9110f580e/791db96f-984d-4482-bd0c-5691bef0b600_gdc_realn.bam 39847331806 BAM hg38 b44bbc36-16b3-431f-878e-c2f9110f580e MGI C3L-00144.Targeted.T C3L-00144 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/21651781-960c-4a4a-9351-4242240d62f0/CPT0001960012.CustomSelection.RP-1303.PDO-18786.bam 4481877861 BAM hg19 21651781-960c-4a4a-9351-4242240d62f0 MGI +C3L-00144.WGS.N.hg38 C3L-00144 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//14d3d74b-7e7e-48d6-bad7-a45fa32e8212/9560d92b-1aef-49fb-8013-5db2e948ad93_gdc_realn.bam 192669392884 BAM hg38 14d3d74b-7e7e-48d6-bad7-a45fa32e8212 MGI C3L-00144.WXS.A.hg38 C3L-00144 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/82953c89-ef19-4068-9569-4a08170279ae/050920fd-6b40-490c-ac47-3f716cf5bac8_wxs_gdc_realn.bam 52209162917 BAM hg38 82953c89-ef19-4068-9569-4a08170279ae MGI C3L-00144.WXS.N.hg38 C3L-00144 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/29122fed-92c5-4c19-9a04-15760d169b42/9560d92b-1aef-49fb-8013-5db2e948ad93_gdc_realn.bam 40576237253 BAM hg38 29122fed-92c5-4c19-9a04-15760d169b42 MGI C3L-00144.WXS.T.hg38 C3L-00144 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/367e1821-44cf-467e-a85a-acf580a60959/1e8747dc-15dd-4c9c-a3aa-710a61988f6a_gdc_realn.bam 50288879480 BAM hg38 367e1821-44cf-467e-a85a-acf580a60959 MGI @@ -143,6 +157,7 @@ C3L-00189.WXS.T C3L-00189 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import C3L-00189.WXS.T.hg38 C3L-00189 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/64daa7de-55e4-4e5c-8844-6e834137bc83/89bd375b-f0de-4c53-bc3a-0857dd2a02ba_gdc_realn.bam 38881407155 BAM hg38 64daa7de-55e4-4e5c-8844-6e834137bc83 MGI C3L-00189.WXS.T.hg38.high_cov C3L-00189 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c472c8ca-7039-47a3-9c0b-cdfd52e24658/9cb5b887-76b0-4202-8db8-b144665dc0e9_wxs_gdc_realn.bam 75973237529 BAM hg38 c472c8ca-7039-47a3-9c0b-cdfd52e24658 MGI C3L-00189.WXS.T.high_cov C3L-00189 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f310171f-7ff0-414e-944d-0eee7e17476f/CPT0081060010_1.WholeExome.RP-1303.bam 55508875305 BAM hg19 f310171f-7ff0-414e-944d-0eee7e17476f MGI +C3L-00263.WGS.N.hg38 C3L-00263 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6590064c-552c-46e9-b432-1689f86250c1/2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 83185306069 BAM hg38 6590064c-552c-46e9-b432-1689f86250c1 MGI C3L-00263.WXS.A.hg38 C3L-00263 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/673f8519-8dac-477f-917b-6f80a0f2c271/a8887a87-88db-47e9-9f1a-c49f75ac8d6a_wxs_gdc_realn.bam 41569850743 BAM hg38 673f8519-8dac-477f-917b-6f80a0f2c271 MGI C3L-00263.WXS.N.hg38 C3L-00263 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e00e1c39-2d9a-4cc3-98b4-1865ccf237ea/2a51eed2-4a78-45ad-8209-d87968005886_gdc_realn.bam 32550839521 BAM hg38 e00e1c39-2d9a-4cc3-98b4-1865ccf237ea MGI C3L-00263.WXS.T.hg38 C3L-00263 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f5f667d2-69bd-4d09-a03a-3cc9932bfcea/f0c8f826-d8fd-4c98-9717-6cca974055dc_gdc_realn.bam 34897668803 BAM hg38 f5f667d2-69bd-4d09-a03a-3cc9932bfcea MGI @@ -164,6 +179,7 @@ C3L-00278.WXS.N C3L-00278 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3L-00278.WXS.N.hg38 C3L-00278 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/796ed8c7-f6ca-4c4f-9723-09e656a1f0a1/d4bac28e-6b0d-4f9b-8bb6-9785ccd8d8ec_gdc_realn.bam 22316074373 BAM hg38 796ed8c7-f6ca-4c4f-9723-09e656a1f0a1 MGI C3L-00278.WXS.T C3L-00278 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/67b85cdd-1d28-40f4-8933-82c2067ea308/CPT0000430002.WholeExome.RP-1303.bam 33215403612 BAM hg19 67b85cdd-1d28-40f4-8933-82c2067ea308 MGI C3L-00278.WXS.T.hg38 C3L-00278 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8e9a3635-2e1f-4fb7-bde5-20edff56b6c6/a2c60332-44c4-4103-9333-c22d7ae59578_gdc_realn.bam 45375796418 BAM hg38 8e9a3635-2e1f-4fb7-bde5-20edff56b6c6 MGI +C3L-00279.WGS.N.hg38 C3L-00279 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//22224aab-7f41-4ae5-8acd-a93d161cf396/65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 133995229320 BAM hg38 22224aab-7f41-4ae5-8acd-a93d161cf396 MGI C3L-00279.WXS.A.hg38 C3L-00279 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c6774ea8-e4d7-443d-923b-f128be2ca46f/59fb1c78-43fc-40d8-bdb5-4722c0670842_wxs_gdc_realn.bam 66944844275 BAM hg38 c6774ea8-e4d7-443d-923b-f128be2ca46f MGI C3L-00279.WXS.N.hg38 C3L-00279 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/35dc37bc-38cf-4431-a8da-347eb39ce8df/65e20a75-5878-465c-b516-43c5169cd45a_gdc_realn.bam 33803250245 BAM hg38 35dc37bc-38cf-4431-a8da-347eb39ce8df MGI C3L-00279.WXS.T.hg38 C3L-00279 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c83272c0-2512-416f-8d44-3b280bd3e8b8/d974bcf0-cacc-4d3c-9ad7-c3851c1e2cb1_gdc_realn.bam 52184801332 BAM hg38 c83272c0-2512-416f-8d44-3b280bd3e8b8 MGI @@ -188,6 +204,7 @@ C3L-00362.WXS.T.hg38 C3L-00362 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_ C3L-00365.RNA-Seq.genomic.T.hg38 C3L-00365 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/80b3658b-b3ff-4a3f-af7d-e5a510d90d69/b44988b3-2906-455f-9a03-98e881ec0826.rna_seq.genomic.gdc_realn.bam 9237866035 BAM hg38 80b3658b-b3ff-4a3f-af7d-e5a510d90d69 MGI C3L-00365.WXS.N.hg38 C3L-00365 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4439be55-0fe8-4392-b430-fa195ca046a8/1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 40164206329 BAM hg38 4439be55-0fe8-4392-b430-fa195ca046a8 MGI C3L-00365.WXS.T.hg38 C3L-00365 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b86f23ec-d40a-46e3-af36-f0529449ea22/fded09b0-7908-4f9f-9f43-b3e8833bf39e_gdc_realn.bam 33672976359 BAM hg38 b86f23ec-d40a-46e3-af36-f0529449ea22 MGI +C3L-00368.WGS.N.hg38 C3L-00368 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d730cefc-a602-472e-8450-43a4ee8923b3/d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 99365652695 BAM hg38 d730cefc-a602-472e-8450-43a4ee8923b3 MGI C3L-00368.WXS.A.hg38 C3L-00368 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e754a0d2-732e-4e28-88f8-6028d778f89c/eb9967de-974e-4c8b-b16c-4da0dd47f3ed_wxs_gdc_realn.bam 46333355955 BAM hg38 e754a0d2-732e-4e28-88f8-6028d778f89c MGI C3L-00368.WXS.N.hg38 C3L-00368 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cb0fb2a7-2c6b-4855-9a62-9350f0683bb8/d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 44407190653 BAM hg38 cb0fb2a7-2c6b-4855-9a62-9350f0683bb8 MGI C3L-00368.WXS.T.hg38 C3L-00368 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/85024923-5694-4461-81a3-100f9a44db27/72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 51264266651 BAM hg38 85024923-5694-4461-81a3-100f9a44db27 MGI @@ -212,11 +229,13 @@ C3L-00401.WXS.T C3L-00401 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import C3L-00401.WXS.T.hg38 C3L-00401 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/cc0c9dac-72a5-4219-87bb-db8bbcba19b7/3656044a-0cdc-4745-8b5b-e7e2f65387a4_gdc_realn.bam 77006977130 BAM hg38 cc0c9dac-72a5-4219-87bb-db8bbcba19b7 MGI C3L-00401.WXS.T.hg38.high_cov C3L-00401 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9fd1fb54-1e8c-4f0f-93cf-db2c72a20ec1/53031bb7-6216-4ea9-a7fd-86390fb1af88_wxs_gdc_realn.bam 112778121060 BAM hg38 9fd1fb54-1e8c-4f0f-93cf-db2c72a20ec1 MGI C3L-00401.WXS.T.high_cov C3L-00401 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/13597774-6e3e-464c-b834-c543afc73d81/CPT0019300010_1.WholeExome.RP-1303.bam 82311480671 BAM hg19 13597774-6e3e-464c-b834-c543afc73d81 MGI +C3L-00412.WGS.N.hg38 C3L-00412 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a7fa51d9-6b5a-4674-9cff-60771fba8ce7/93d63368-79fa-42d3-88df-cf070ac6460d_gdc_realn.bam 101875310751 BAM hg38 a7fa51d9-6b5a-4674-9cff-60771fba8ce7 MGI C3L-00412.WXS.A.hg38 C3L-00412 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f7962626-53e9-42fa-b713-16f5ff08febe/276865e9-3b98-4544-bc48-f3dba290537c_wxs_gdc_realn.bam 40661049193 BAM hg38 f7962626-53e9-42fa-b713-16f5ff08febe MGI C3L-00412.WXS.N.hg38 C3L-00412 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a03ee68b-c664-4f01-b336-068608fc760a/93d63368-79fa-42d3-88df-cf070ac6460d_gdc_realn.bam 41445003359 BAM hg38 a03ee68b-c664-4f01-b336-068608fc760a MGI C3L-00412.WXS.T.hg38 C3L-00412 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f725603f-013e-49ec-821e-bf3e38858aa2/9cc4a810-0c4e-4b3e-a95c-bc041d77d81d_gdc_realn.bam 37418463633 BAM hg38 f725603f-013e-49ec-821e-bf3e38858aa2 MGI C3L-00413.WXS.N.hg38 C3L-00413 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6058412c-d366-44dd-a0fc-4aad9f6166dc/92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 37443124568 BAM hg38 6058412c-d366-44dd-a0fc-4aad9f6166dc MGI C3L-00413.WXS.T.hg38 C3L-00413 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f9bf7283-eb23-477d-bc36-b928c96ff1f2/ef798c59-f595-45b8-960e-6b36c8169fb9_gdc_realn.bam 33283872888 BAM hg38 f9bf7283-eb23-477d-bc36-b928c96ff1f2 MGI +C3L-00415.WGS.N.hg38 C3L-00415 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//1415f178-da4e-478d-9909-53e201c259e4/ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 107561633801 BAM hg38 1415f178-da4e-478d-9909-53e201c259e4 MGI C3L-00415.WXS.A.hg38 C3L-00415 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a8abf789-a228-4661-acba-b876daf59b53/46ef162e-6ea4-45a1-adac-24b1615c7c8a_wxs_gdc_realn.bam 64522643308 BAM hg38 a8abf789-a228-4661-acba-b876daf59b53 MGI C3L-00415.WXS.N.hg38 C3L-00415 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9767a9c2-d36b-4cd8-b3bf-e007b9766cc1/ded35b91-a827-4d01-aba8-765d7ba7e4ac_gdc_realn.bam 37758559568 BAM hg38 9767a9c2-d36b-4cd8-b3bf-e007b9766cc1 MGI C3L-00415.WXS.T.hg38 C3L-00415 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b9f0018b-bfa8-4395-9459-f7adc1fe7cc3/6acbde3c-8e88-4c38-85d5-8868552a6441_gdc_realn.bam 43394411617 BAM hg38 b9f0018b-bfa8-4395-9459-f7adc1fe7cc3 MGI @@ -230,6 +249,7 @@ C3L-00418.WXS.T.HET_rkOBM2.hg38 C3L-00418 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3L-00418.WXS.T.HET_rkwKwB C3L-00418 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/49efab1d-05c1-4860-8a71-1fc788f788af/CPT0006640009.WholeExome.RP-1303.bam 22814762937 BAM hg19 49efab1d-05c1-4860-8a71-1fc788f788af MGI C3L-00418.WXS.T.HET_rkwKwB.hg38 C3L-00418 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/05abe915-a00c-43a7-bb15-3cb854536aac/8cf9a884-3e61-443f-8784-17e365f879cd_wxs_gdc_realn.bam 31109924748 BAM hg38 05abe915-a00c-43a7-bb15-3cb854536aac MGI C3L-00418.WXS.T.hg38 C3L-00418 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4a9f8a4a-599a-4584-8a3f-172e1e4f4f4d/1b9f819b-a488-4f4d-8b10-cd30e4ada90c_gdc_realn.bam 31097433856 BAM hg38 4a9f8a4a-599a-4584-8a3f-172e1e4f4f4d MGI +C3L-00422.WGS.N.hg38 C3L-00422 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//844da3e5-7f5e-49be-843a-62ebc6fce4b5/37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 102785940242 BAM hg38 844da3e5-7f5e-49be-843a-62ebc6fce4b5 MGI C3L-00422.WXS.A.hg38 C3L-00422 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2a2e8292-90a0-494b-af3c-6b78153e25a1/1468d8d0-c4b4-4c00-b057-97b8d19a4bd8_wxs_gdc_realn.bam 54298231140 BAM hg38 2a2e8292-90a0-494b-af3c-6b78153e25a1 MGI C3L-00422.WXS.N.hg38 C3L-00422 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/79be3375-4849-4bb2-ac6e-f30cba74c8c2/37d21656-4deb-40ff-9aee-4f619a70bb4b_gdc_realn.bam 34558769145 BAM hg38 79be3375-4849-4bb2-ac6e-f30cba74c8c2 MGI C3L-00422.WXS.T.hg38 C3L-00422 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/191ab7f2-92dc-450a-8860-7510e5210f53/d2779a54-6282-4c22-a689-d752fbdc3b21_gdc_realn.bam 34835997820 BAM hg38 191ab7f2-92dc-450a-8860-7510e5210f53 MGI @@ -244,6 +264,7 @@ C3L-00429.WXS.T.hg38 C3L-00429 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC C3L-00444.WXS.A.hg38 C3L-00444 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/efaeff8a-b42e-49fa-8f89-a847b4cb67d5/207dfc06-0684-4fb5-b41e-b086e29ed031_wxs_gdc_realn.bam 33144843450 BAM hg38 efaeff8a-b42e-49fa-8f89-a847b4cb67d5 MGI C3L-00444.WXS.N.hg38 C3L-00444 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bdfb9339-ba92-4f83-bad7-80168a77a95e/f18e1637-2c6e-4970-a4e5-bcf58991b13d_wxs_gdc_realn.bam 31263724202 BAM hg38 bdfb9339-ba92-4f83-bad7-80168a77a95e MGI C3L-00444.WXS.T.hg38 C3L-00444 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c71d112f-c054-4d0d-9081-9d9e664f18ee/3dbbf0d2-e67d-4401-8199-a2377fac5565_wxs_gdc_realn.bam 32275079728 BAM hg38 c71d112f-c054-4d0d-9081-9d9e664f18ee MGI +C3L-00445.WGS.N.hg38 C3L-00445 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//446f4c05-4489-4fcb-bdae-f7111851ad05/671050aa-def8-4a5c-9101-f9e53d9e8fe4_wgs_gdc_realn.bam 72801510671 BAM hg38 446f4c05-4489-4fcb-bdae-f7111851ad05 MGI C3L-00445.WXS.N.hg38 C3L-00445 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c84accfb-8a6a-4727-9b19-3ed0e410622e/671050aa-def8-4a5c-9101-f9e53d9e8fe4_wxs_gdc_realn.bam 35167405100 BAM hg38 c84accfb-8a6a-4727-9b19-3ed0e410622e MGI C3L-00445.WXS.T.hg38 C3L-00445 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bda0039c-16cd-49a8-82de-43a50339a47d/0a402562-24c6-4a9f-af18-9c5ac968f866_wxs_gdc_realn.bam 38846497772 BAM hg38 bda0039c-16cd-49a8-82de-43a50339a47d MGI C3L-00446.WXS.A.hg38 C3L-00446 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a34d7335-657d-47b2-b59a-7e9458bd2945/75048cfb-71f1-4fdf-b78c-aa86369f3619_wxs_gdc_realn.bam 53506884084 BAM hg38 a34d7335-657d-47b2-b59a-7e9458bd2945 MGI @@ -268,6 +289,7 @@ C3L-00506.WXS.N C3L-00506 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3L-00506.WXS.N.hg38 C3L-00506 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a83137eb-0bbe-435b-a04e-fa5eb01d5bf3/7caabded-768a-4faf-b164-e646657c0a08_gdc_realn.bam 32397684331 BAM hg38 a83137eb-0bbe-435b-a04e-fa5eb01d5bf3 MGI C3L-00506.WXS.T C3L-00506 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e2d15974-348b-47ff-b488-bc88580afbd2/CPT0017560018.WholeExome.RP-1303.bam 31079432304 BAM hg19 e2d15974-348b-47ff-b488-bc88580afbd2 MGI C3L-00506.WXS.T.hg38 C3L-00506 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5b99bd9e-8ff3-4dcc-a417-16c2a540c0d9/3d0b68f7-ef37-4da6-8626-0ffcbed10d02_gdc_realn.bam 42322349762 BAM hg38 5b99bd9e-8ff3-4dcc-a417-16c2a540c0d9 MGI +C3L-00510.WGS.N.hg38 C3L-00510 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//fa23d9da-e01e-488e-88e0-b64662d57826/7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 115533506100 BAM hg38 fa23d9da-e01e-488e-88e0-b64662d57826 MGI C3L-00510.WXS.A.hg38 C3L-00510 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/170c8f25-85fe-4a66-8d41-cb9926cbc679/5647908e-8c82-4887-94db-e88fc075275d_wxs_gdc_realn.bam 48904670313 BAM hg38 170c8f25-85fe-4a66-8d41-cb9926cbc679 MGI C3L-00510.WXS.N.hg38 C3L-00510 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/88a680ac-60b4-473d-8a36-60159a789e3b/7877dbfe-0f47-4f17-8415-bbf4fac43aaa_gdc_realn.bam 44901361910 BAM hg38 88a680ac-60b4-473d-8a36-60159a789e3b MGI C3L-00510.WXS.T.hg38 C3L-00510 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/86533b96-e67b-4406-a7ff-10cc4ae81b6a/20dda897-e9c3-4180-bfae-686cff203424_gdc_realn.bam 30787897783 BAM hg38 86533b96-e67b-4406-a7ff-10cc4ae81b6a MGI @@ -284,6 +306,7 @@ C3L-00564.WXS.N.hg38 C3L-00564 SAR WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-d C3L-00564.WXS.T.hg38 C3L-00564 SAR WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/241fde4e-e916-4034-a9d8-924d5d9f156e/13851dad-1772-4beb-a739-4bbd2e3abf74_gdc_realn.bam 48686742348 BAM hg38 241fde4e-e916-4034-a9d8-924d5d9f156e MGI C3L-00567.WXS.N.hg38 C3L-00567 SAR WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a523324f-4984-4fa8-b34d-2ff6cb42d70b/31b10753-9e32-4c4f-b718-bf3e6e598b89_gdc_realn.bam 44105781841 BAM hg38 a523324f-4984-4fa8-b34d-2ff6cb42d70b MGI C3L-00567.WXS.T.hg38 C3L-00567 SAR WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/87b5bbee-395e-46c9-b20e-768e0bbf874c/ad9fc498-3eec-467e-978c-d35aab0a2c79_gdc_realn.bam 35816039577 BAM hg38 87b5bbee-395e-46c9-b20e-768e0bbf874c MGI +C3L-00568.WGS.N.hg38 C3L-00568 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a1415e5d-d67b-494a-9bc7-f2b1d7548803/556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 109357855846 BAM hg38 a1415e5d-d67b-494a-9bc7-f2b1d7548803 MGI C3L-00568.WXS.A.hg38 C3L-00568 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/83a5b91e-7e86-49c9-aa73-50784d8d6ed3/d6197e35-b862-4f90-8986-af1a6450b2f7_wxs_gdc_realn.bam 37682193705 BAM hg38 83a5b91e-7e86-49c9-aa73-50784d8d6ed3 MGI C3L-00568.WXS.N.hg38 C3L-00568 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/63c3f570-84a2-4548-b619-ed7c70a38485/556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 53080986015 BAM hg38 63c3f570-84a2-4548-b619-ed7c70a38485 MGI C3L-00568.WXS.T.hg38 C3L-00568 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f/a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 58982752050 BAM hg38 8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f MGI @@ -333,9 +356,11 @@ C3L-00599.WXS.T.high_cov C3L-00599 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/G C3L-00601.WXS.A.hg38 C3L-00601 UCEC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6cdc37c9-2e78-4d61-b4eb-9abdf5776b9f/babcb183-1b5a-4b68-b09f-636e02e71030_wxs_gdc_realn.bam 42017521402 BAM hg38 6cdc37c9-2e78-4d61-b4eb-9abdf5776b9f MGI C3L-00601.WXS.N.hg38 C3L-00601 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b7d63e3b-56bd-446b-a6ef-c6197ef84a94/50c4a6f8-9efd-4898-a962-a7d89078b9b5_gdc_realn.bam 34027249380 BAM hg38 b7d63e3b-56bd-446b-a6ef-c6197ef84a94 MGI C3L-00601.WXS.T.hg38 C3L-00601 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/52aa202f-2d6e-4b6d-bbae-49bdda1d0f3c/84ccff59-af29-4cbf-8068-185a2e2b4c1f_gdc_realn.bam 35177354356 BAM hg38 52aa202f-2d6e-4b6d-bbae-49bdda1d0f3c MGI +C3L-00603.WGS.N.hg38 C3L-00603 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e257e919-586e-4b59-a437-cf85f7302a0a/f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 113637734370 BAM hg38 e257e919-586e-4b59-a437-cf85f7302a0a MGI C3L-00603.WXS.A.hg38 C3L-00603 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4534d251-625c-42b2-bb08-616e868c8560/123bd489-c6dc-474d-8516-cb98dec889bb_wxs_gdc_realn.bam 43564524459 BAM hg38 4534d251-625c-42b2-bb08-616e868c8560 MGI C3L-00603.WXS.N.hg38 C3L-00603 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/760d6f80-158b-4877-b7a9-4a9339da9b3f/f36cc437-ce45-4922-84b4-ce0b89a29787_gdc_realn.bam 40949474640 BAM hg38 760d6f80-158b-4877-b7a9-4a9339da9b3f MGI C3L-00603.WXS.T.hg38 C3L-00603 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4f9fb2d6-54be-4eae-a522-6af470371606/07d0fbf7-5440-4262-965f-c1cc1a739ea4_gdc_realn.bam 37894491789 BAM hg38 4f9fb2d6-54be-4eae-a522-6af470371606 MGI +C3L-00604.WGS.N.hg38 C3L-00604 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//5f20f01b-b4e8-4e8a-9dba-8351c388f10c/c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 94701123417 BAM hg38 5f20f01b-b4e8-4e8a-9dba-8351c388f10c MGI C3L-00604.WXS.A.hg38 C3L-00604 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/39ce1d72-d7ba-4a33-8083-91f449344ff9/d7158a62-4b6b-4102-8459-56e0755e2751_wxs_gdc_realn.bam 59404569432 BAM hg38 39ce1d72-d7ba-4a33-8083-91f449344ff9 MGI C3L-00604.WXS.N.hg38 C3L-00604 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6a6f0f73-df31-44b1-89c6-d871e4c7a050/c8513c30-14af-4dac-89e8-03450586d9f6_gdc_realn.bam 33615478070 BAM hg38 6a6f0f73-df31-44b1-89c6-d871e4c7a050 MGI C3L-00604.WXS.T.hg38 C3L-00604 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8c6f6680-780f-4d40-9056-1a28f2d26d2a/1464b756-be16-4e28-a7c9-29d5bc6172e9_gdc_realn.bam 45869615210 BAM hg38 8c6f6680-780f-4d40-9056-1a28f2d26d2a MGI @@ -454,6 +479,7 @@ C3L-00885.WXS.N C3L-00885 PDA WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3L-00885.WXS.N.hg38 C3L-00885 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/734862fe-d0eb-4568-8887-6f00640aae4c/c4554194-baa1-4066-873c-35857b4e0ea2_gdc_realn.bam 54459191737 BAM hg38 734862fe-d0eb-4568-8887-6f00640aae4c MGI C3L-00885.WXS.T C3L-00885 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/771ce00a-425d-4a4b-af3a-c00db19b1d2d/CPT0064720010.WholeExome.RP-1303.bam 30700834051 BAM hg19 771ce00a-425d-4a4b-af3a-c00db19b1d2d MGI C3L-00885.WXS.T.hg38 C3L-00885 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/e0ccd78a-5362-41d4-bfc0-b48ff9c492a5/d98f794d-a36a-4c2b-8f82-9d4302f04e06_gdc_realn.bam 42519686474 BAM hg38 e0ccd78a-5362-41d4-bfc0-b48ff9c492a5 MGI +C3L-00893.WGS.N.hg38 C3L-00893 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7dd408b2-233e-4bd4-874d-3cec3956d5fe/b686ec16-3532-4c19-83d2-0f7c2a36000b_gdc_realn.bam 107603964270 BAM hg38 7dd408b2-233e-4bd4-874d-3cec3956d5fe MGI C3L-00893.WXS.A.hg38 C3L-00893 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/acdc6114-f6a0-4a02-a650-8850d38e22ff/f9d3dec0-e554-43a7-9957-c29b88eac369_wxs_gdc_realn.bam 44979507116 BAM hg38 acdc6114-f6a0-4a02-a650-8850d38e22ff MGI C3L-00893.WXS.N.hg38 C3L-00893 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/5f337a1b-c618-421e-86de-2d2d4fc2b689/b686ec16-3532-4c19-83d2-0f7c2a36000b_gdc_realn.bam 35026634971 BAM hg38 5f337a1b-c618-421e-86de-2d2d4fc2b689 MGI C3L-00893.WXS.T.hg38 C3L-00893 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a0116323-3a81-4e30-8fda-42ef92d0b231/0815b3bb-c9ee-4804-9f51-05014a8e5fbe_gdc_realn.bam 49062295437 BAM hg38 a0116323-3a81-4e30-8fda-42ef92d0b231 MGI @@ -462,6 +488,7 @@ C3L-00898.WXS.T.hg38 C3L-00898 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/so C3L-00902.WXS.A.hg38 C3L-00902 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c9a67b61-c022-4ada-b7d2-3e27e71572fc/a0f2851f-dfab-44c6-8f10-c08b22b05af9_wxs_gdc_realn.bam 40883515092 BAM hg38 c9a67b61-c022-4ada-b7d2-3e27e71572fc MGI C3L-00902.WXS.N.hg38 C3L-00902 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/63b8df56-736c-4cc2-93cd-c95776e71305/cc4b8a38-f97c-4cc2-b2d6-4f5d4b135ec3_gdc_realn.bam 41233176755 BAM hg38 63b8df56-736c-4cc2-93cd-c95776e71305 MGI C3L-00902.WXS.T.hg38 C3L-00902 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bd67c388-cbb5-459d-babe-e6a80bd7715c/42d54beb-4782-41f3-961e-9e2410b43eb3_gdc_realn.bam 47930609964 BAM hg38 bd67c388-cbb5-459d-babe-e6a80bd7715c MGI +C3L-00904.WGS.N.hg38 C3L-00904 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//321d197d-86f3-4d3a-8434-2b621da14ed4/a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 116634762187 BAM hg38 321d197d-86f3-4d3a-8434-2b621da14ed4 MGI C3L-00904.WXS.A.hg38 C3L-00904 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d7c71375-e58a-4539-b9a3-b4adc306e9ad/32e37138-84ae-40e3-9533-7d9be547c627_wxs_gdc_realn.bam 31242822161 BAM hg38 d7c71375-e58a-4539-b9a3-b4adc306e9ad MGI C3L-00904.WXS.N.hg38 C3L-00904 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cb1142be-7646-47db-a541-3f6d19484c41/a8847ec8-8718-435a-a1df-77690c4a60f1_gdc_realn.bam 52673035957 BAM hg38 cb1142be-7646-47db-a541-3f6d19484c41 MGI C3L-00904.WXS.T.hg38 C3L-00904 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cc52b89d-2749-4217-b120-7dfb692d90fd/c643b5b9-f774-44bb-bb8c-a6ab9d1e0d29_gdc_realn.bam 52926343476 BAM hg38 cc52b89d-2749-4217-b120-7dfb692d90fd MGI @@ -481,6 +508,7 @@ C3L-00908.WXS.T.hg38 C3L-00908 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3L-00910.WXS.A.hg38 C3L-00910 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/27fbdf8a-939a-4ca9-80e3-b4c793e5a834/9039addf-b905-4979-b0ec-8d2f9424bbff_wxs_gdc_realn.bam 51473588558 BAM hg38 27fbdf8a-939a-4ca9-80e3-b4c793e5a834 MGI C3L-00910.WXS.N.hg38 C3L-00910 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a830ee67-80a9-452b-8f2c-7c54d60e85bc/bae124ef-545f-4ee7-b213-6cc7a8318785_gdc_realn.bam 40941856182 BAM hg38 a830ee67-80a9-452b-8f2c-7c54d60e85bc MGI C3L-00910.WXS.T.hg38 C3L-00910 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f4679565-9c0b-4a57-81dd-a7874201e89a/0e1ef677-2bda-46f2-b966-2aeecae64ba3_gdc_realn.bam 38709980772 BAM hg38 f4679565-9c0b-4a57-81dd-a7874201e89a MGI +C3L-00913.WGS.N.hg38 C3L-00913 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//113ddb52-9242-45d9-a09f-fef793fefa30/84a2ecc7-55f4-4985-810f-c38e9258e6bb_wgs_gdc_realn.bam 96270239900 BAM hg38 113ddb52-9242-45d9-a09f-fef793fefa30 MGI C3L-00913.WXS.A.hg38 C3L-00913 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a95a7ee7-b3fe-4eef-afbd-d504d39a6f92/1cc1dfd5-2037-4c9f-91de-bb275a30e38e_wxs_gdc_realn.bam 47339339748 BAM hg38 a95a7ee7-b3fe-4eef-afbd-d504d39a6f92 MGI C3L-00913.WXS.N.hg38 C3L-00913 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8718dc36-49b1-434b-8b54-112473c424fb/84a2ecc7-55f4-4985-810f-c38e9258e6bb_wxs_gdc_realn.bam 44439910332 BAM hg38 8718dc36-49b1-434b-8b54-112473c424fb MGI C3L-00913.WXS.T.hg38 C3L-00913 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/08a37787-06e2-4bf3-8918-08cd27e8f024/875fe663-c1d0-4ea7-825e-a718f4a7c4a2_wxs_gdc_realn.bam 55521480077 BAM hg38 08a37787-06e2-4bf3-8918-08cd27e8f024 MGI @@ -491,9 +519,11 @@ C3L-00918.WXS.N.hg38 C3L-00918 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cpta C3L-00918.WXS.T.hg38 C3L-00918 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dbc8d39f-66cc-4ec1-8988-d6997c19f80d/2d192478-8285-48eb-855b-40b8ce2a42a0_gdc_realn.bam 57688324627 BAM hg38 dbc8d39f-66cc-4ec1-8988-d6997c19f80d MGI C3L-00921.WXS.N.hg38 C3L-00921 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2bb81d8c-9d4e-441e-ad35-b5c5474a8559/5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 28356223871 BAM hg38 2bb81d8c-9d4e-441e-ad35-b5c5474a8559 MGI C3L-00921.WXS.T.hg38 C3L-00921 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/08f80502-5363-432c-93ae-25f87330cf9e/b9d8510c-3b0e-49fb-98a3-c7db2cd05da7_gdc_realn.bam 36702146113 BAM hg38 08f80502-5363-432c-93ae-25f87330cf9e MGI +C3L-00923.WGS.N.hg38 C3L-00923 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b4357651-c5f4-4003-a4e5-a7833f5b82eb/d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 92854181272 BAM hg38 b4357651-c5f4-4003-a4e5-a7833f5b82eb MGI C3L-00923.WXS.A.hg38 C3L-00923 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/07a69b64-a3fe-4e58-b7fc-8fa6276b2c36/152edad9-88f9-4902-b4b5-259a03f52797_wxs_gdc_realn.bam 43482022374 BAM hg38 07a69b64-a3fe-4e58-b7fc-8fa6276b2c36 MGI C3L-00923.WXS.N.hg38 C3L-00923 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4a059854-cff6-4dba-a57b-83aed6d94595/d3a17aae-7ccc-4e62-b6f9-7a7f0bfb20eb_gdc_realn.bam 40082091718 BAM hg38 4a059854-cff6-4dba-a57b-83aed6d94595 MGI C3L-00923.WXS.T.hg38 C3L-00923 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a3368d17-8c03-4876-96e1-63c5e1154323/4fe1aac3-4bf0-4ceb-a371-c129d5fac28d_gdc_realn.bam 51157216279 BAM hg38 a3368d17-8c03-4876-96e1-63c5e1154323 MGI +C3L-00927.WGS.N.hg38 C3L-00927 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//5f20d768-3910-41ba-916c-9dae17838d8a/b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 139557671252 BAM hg38 5f20d768-3910-41ba-916c-9dae17838d8a MGI C3L-00927.WXS.A.hg38 C3L-00927 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2513958e-cacf-43bb-8952-153456239ee5/5b5b4d6b-ebe0-4b3b-ad1e-4b99c11dfa76_wxs_gdc_realn.bam 32157948112 BAM hg38 2513958e-cacf-43bb-8952-153456239ee5 MGI C3L-00927.WXS.N.hg38 C3L-00927 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ca299aae-7e7f-4ea7-a08f-9025151ccbd4/b41c0aec-0ac2-4394-843c-def04c66212e_gdc_realn.bam 52274879999 BAM hg38 ca299aae-7e7f-4ea7-a08f-9025151ccbd4 MGI C3L-00927.WXS.T.hg38 C3L-00927 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b93fc4ee-6d67-44f3-a9ff-ecd30aa1eb76/57bdf35e-fa6d-4379-b4bc-1baa1e07fec3_gdc_realn.bam 30246060444 BAM hg38 b93fc4ee-6d67-44f3-a9ff-ecd30aa1eb76 MGI @@ -529,6 +559,7 @@ C3L-00961.WXS.N.hg38 C3L-00961 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cpta C3L-00961.WXS.T.hg38 C3L-00961 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/266c147a-cbf1-4b6d-8bb7-2497f2ad9013/56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 34761278162 BAM hg38 266c147a-cbf1-4b6d-8bb7-2497f2ad9013 MGI C3L-00963.WXS.N.hg38 C3L-00963 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/36a10350-2017-46dc-ae84-9d87036edd79/6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 45909974051 BAM hg38 36a10350-2017-46dc-ae84-9d87036edd79 MGI C3L-00963.WXS.T.hg38 C3L-00963 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ab63ee96-3de7-40ee-92a4-1ca8a2bca48d/8dd015d6-ae3a-40d5-bc79-798ae6e58d69_gdc_realn.bam 33896115966 BAM hg38 ab63ee96-3de7-40ee-92a4-1ca8a2bca48d MGI +C3L-00965.WGS.N.hg38 C3L-00965 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//178064bc-5caa-486d-a646-d6cb4dcb1eda/fb9fa687-6ff7-445d-8f04-b7831151cb3b_wgs_gdc_realn.bam 93380029224 BAM hg38 178064bc-5caa-486d-a646-d6cb4dcb1eda MGI C3L-00965.WXS.N.hg38 C3L-00965 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b482fcb7-3eed-4ae7-949f-51438a7a2f53/fb9fa687-6ff7-445d-8f04-b7831151cb3b_wxs_gdc_realn.bam 45644011184 BAM hg38 b482fcb7-3eed-4ae7-949f-51438a7a2f53 MGI C3L-00965.WXS.T.hg38 C3L-00965 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2bf65b88-0fdd-4b8d-a72e-49a5e41e4167/12efcab8-04a7-4ae6-ac66-34cac3484d19_wxs_gdc_realn.bam 52570455626 BAM hg38 2bf65b88-0fdd-4b8d-a72e-49a5e41e4167 MGI C3L-00966.WXS.A.hg38 C3L-00966 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1468e028-cb5d-468d-8873-459532bbe7b6/20b0ba65-fa9c-49ad-850d-d9f3e644a617_wxs_gdc_realn.bam 35906905747 BAM hg38 1468e028-cb5d-468d-8873-459532bbe7b6 MGI @@ -543,6 +574,7 @@ C3L-00969.WXS.T.hg38 C3L-00969 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3L-00970.WXS.A.hg38 C3L-00970 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cceb8df3-3ce8-40b7-a15f-19f6c601b90a/2b440467-5dea-4683-8499-db738bd1eba9_wxs_gdc_realn.bam 40701316796 BAM hg38 cceb8df3-3ce8-40b7-a15f-19f6c601b90a MGI C3L-00970.WXS.N.hg38 C3L-00970 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/18f64221-b89d-419e-ac37-b2c97aefeb2a/136f342e-618f-48c7-9789-e627a84526d6_wxs_gdc_realn.bam 57510266487 BAM hg38 18f64221-b89d-419e-ac37-b2c97aefeb2a MGI C3L-00970.WXS.T.hg38 C3L-00970 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d131ff80-06ff-430c-bcc6-05ab73189502/6e2e4c4a-3686-4a3d-b09f-b7c7a212ce65_wxs_gdc_realn.bam 41661750429 BAM hg38 d131ff80-06ff-430c-bcc6-05ab73189502 MGI +C3L-00973.WGS.N.hg38 C3L-00973 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//471ef584-8629-4a6a-9bdb-1e4631cc1123/4ae4f34f-1fdd-46ce-8b23-e7558b3f2a92_wgs_gdc_realn.bam 82060420662 BAM hg38 471ef584-8629-4a6a-9bdb-1e4631cc1123 MGI C3L-00973.WXS.A.hg38 C3L-00973 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2e16175d-3a13-434e-b3f9-8f266f19e9fb/a5d626de-da00-4c72-877a-1d9e2a6ea6d0_wxs_gdc_realn.bam 57135015167 BAM hg38 2e16175d-3a13-434e-b3f9-8f266f19e9fb MGI C3L-00973.WXS.N.hg38 C3L-00973 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bbf65579-b6c1-4b1f-81fa-8baad63d7e19/4ae4f34f-1fdd-46ce-8b23-e7558b3f2a92_wxs_gdc_realn.bam 42320130711 BAM hg38 bbf65579-b6c1-4b1f-81fa-8baad63d7e19 MGI C3L-00973.WXS.T.hg38 C3L-00973 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0e52d04e-f841-4e3b-9a00-00bfbb5b4fae/d76dbd49-7705-404a-a526-36c29dc4b2e5_wxs_gdc_realn.bam 50342118691 BAM hg38 0e52d04e-f841-4e3b-9a00-00bfbb5b4fae MGI @@ -565,6 +597,7 @@ C3L-00987.WXS.T.hg38 C3L-00987 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3L-00991.WXS.A.hg38 C3L-00991 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b9001265-a3b9-4ce3-b0f1-a39da2142783/ec283004-af44-4c9e-a7dd-b612be07284b_wxs_gdc_realn.bam 27275807458 BAM hg38 b9001265-a3b9-4ce3-b0f1-a39da2142783 MGI C3L-00991.WXS.N.hg38 C3L-00991 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ab6f1c7f-d40f-4d65-9842-9328dff1ed0e/8dc92f70-9830-4d9d-8e77-288406b2abee_wxs_gdc_realn.bam 32469409236 BAM hg38 ab6f1c7f-d40f-4d65-9842-9328dff1ed0e MGI C3L-00991.WXS.T.hg38 C3L-00991 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/37800cf7-2080-446f-b4a4-c97fb5987f72/bbfd62a1-2f6a-41f0-a8c6-015b6132e2c2_wxs_gdc_realn.bam 36458132374 BAM hg38 37800cf7-2080-446f-b4a4-c97fb5987f72 MGI +C3L-00993.WGS.N.hg38 C3L-00993 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6d7b2df0-5008-4cef-922e-58fa9be16ba8/3a95c365-c7ec-44e1-88cf-1a5a9711d928_wgs_gdc_realn.bam 87027263680 BAM hg38 6d7b2df0-5008-4cef-922e-58fa9be16ba8 MGI C3L-00993.WXS.A.hg38 C3L-00993 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7421956e-ccc2-4ee4-bc40-d3c66b8037e1/9d07d0b9-db86-441c-996a-990a6389901b_wxs_gdc_realn.bam 37013582027 BAM hg38 7421956e-ccc2-4ee4-bc40-d3c66b8037e1 MGI C3L-00993.WXS.N.hg38 C3L-00993 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d018d51f-b828-424a-ad81-074aa8e5ae61/3a95c365-c7ec-44e1-88cf-1a5a9711d928_wxs_gdc_realn.bam 50723184715 BAM hg38 d018d51f-b828-424a-ad81-074aa8e5ae61 MGI C3L-00993.WXS.T.hg38 C3L-00993 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b3f92006-fc40-402c-afb4-1f68b89ed7b8/a6c3d626-63a7-41ce-9c86-7bb0d30a71b6_wxs_gdc_realn.bam 54205971202 BAM hg38 b3f92006-fc40-402c-afb4-1f68b89ed7b8 MGI @@ -576,6 +609,7 @@ C3L-00997.WXS.N.hg38 C3L-00997 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3L-00997.WXS.T.hg38 C3L-00997 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2b9de4e4-0f34-4dba-b986-2957d4a3c088/1e3b8e97-6196-4930-9588-abbe7c613637_wxs_gdc_realn.bam 42996853634 BAM hg38 2b9de4e4-0f34-4dba-b986-2957d4a3c088 MGI C3L-00999.WXS.N.hg38 C3L-00999 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a0a3d309-499c-4af7-85a8-42b7de90f595/a78e438f-2565-4383-b625-43310079ac32_wxs_gdc_realn.bam 40331707482 BAM hg38 a0a3d309-499c-4af7-85a8-42b7de90f595 MGI C3L-00999.WXS.T.hg38 C3L-00999 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/863d8326-034e-4eee-af13-3f6d836825ac/ab838072-d27e-4066-9e36-7ff17592c06c_wxs_gdc_realn.bam 31829941925 BAM hg38 863d8326-034e-4eee-af13-3f6d836825ac MGI +C3L-01000.WGS.N.hg38 C3L-01000 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e8856e7c-0843-494a-af8e-39e107a3d76c/11276d27-830d-4769-ad1b-c68676e58625_wgs_gdc_realn.bam 97368795130 BAM hg38 e8856e7c-0843-494a-af8e-39e107a3d76c MGI C3L-01000.WXS.N.hg38 C3L-01000 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a75e05d6-84aa-404a-a7e6-23e76a4fdc89/11276d27-830d-4769-ad1b-c68676e58625_wxs_gdc_realn.bam 37186794701 BAM hg38 a75e05d6-84aa-404a-a7e6-23e76a4fdc89 MGI C3L-01000.WXS.T.hg38 C3L-01000 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d793c326-a30f-4dc6-848d-bb47a385666a/85d26179-d508-42a7-96c2-c030e69c8600_wxs_gdc_realn.bam 57160573198 BAM hg38 d793c326-a30f-4dc6-848d-bb47a385666a MGI C3L-01031.Targeted.T C3L-01031 PDA Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9297de8f-2235-468f-bda8-39a96769338c/CPT0127270006_1.CustomSelection.RP-1303.PDO-18786.bam 5045331329 BAM hg19 9297de8f-2235-468f-bda8-39a96769338c MGI @@ -750,6 +784,7 @@ C3L-01283.WXS.N.hg38 C3L-01283 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3L-01283.WXS.T.hg38 C3L-01283 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b2e8bff6-307d-4f95-902d-f89c6b0a2401/378ea411-3d58-4f9a-803d-8b7b89c9a5b3_gdc_realn.bam 34985381875 BAM hg38 b2e8bff6-307d-4f95-902d-f89c6b0a2401 MGI C3L-01284.WXS.N.hg38 C3L-01284 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7725038c-3433-45d5-bda4-1b5dd52a9b87/3d32ea57-7403-4d6e-ad7a-c86faa54393d_gdc_realn.bam 32938287456 BAM hg38 7725038c-3433-45d5-bda4-1b5dd52a9b87 MGI C3L-01284.WXS.T.hg38 C3L-01284 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c5047b0d-9e91-41d3-bef5-ba35d086456d/f36e8c4a-0fc4-4b27-9629-d4838f7ba815_gdc_realn.bam 43317132193 BAM hg38 c5047b0d-9e91-41d3-bef5-ba35d086456d MGI +C3L-01285.WGS.N.hg38 C3L-01285 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//f52e8430-6879-4a01-b417-9f9221970f98/e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wgs_gdc_realn.bam 100210891212 BAM hg38 f52e8430-6879-4a01-b417-9f9221970f98 MGI C3L-01285.WXS.A.hg38 C3L-01285 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/84c740d9-f1dc-4b7d-91a1-010e2aa16846/68478f98-036d-4812-9b6d-a8a850925cb3_wxs_gdc_realn.bam 49934861081 BAM hg38 84c740d9-f1dc-4b7d-91a1-010e2aa16846 MGI C3L-01285.WXS.N.hg38 C3L-01285 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/425b6b9a-af16-45d3-995d-790e291ca478/e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wxs_gdc_realn.bam 38641817752 BAM hg38 425b6b9a-af16-45d3-995d-790e291ca478 MGI C3L-01285.WXS.T.ADNA_roMl92.hg38 C3L-01285 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6d6e2b9d-4d1c-42b4-a6cb-756b8d0ca803/09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wxs_gdc_realn.bam 42998316223 BAM hg38 6d6e2b9d-4d1c-42b4-a6cb-756b8d0ca803 MGI @@ -797,6 +832,7 @@ C3L-01328.WXS.T C3L-01328 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import C3L-01328.WXS.T.hg38 C3L-01328 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/7d6d2d3b-98b9-41e4-8f4c-014245b7f8c7/47bd35c7-9eca-4f60-b46b-0edc44d0ff36_gdc_realn.bam 52406988643 BAM hg38 7d6d2d3b-98b9-41e4-8f4c-014245b7f8c7 MGI C3L-01328.WXS.T.hg38.high_cov C3L-01328 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5024d5b1-2feb-4db3-9d62-a83177088a02/a1f1790d-0bc6-422f-bbec-1da8e59c9ecf_wxs_gdc_realn.bam 97390411350 BAM hg38 5024d5b1-2feb-4db3-9d62-a83177088a02 MGI C3L-01328.WXS.T.high_cov C3L-01328 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/095f2dfb-9a49-458f-ac99-4613112062b6/CPT0083270006_1.WholeExome.RP-1303.bam 71250892669 BAM hg19 095f2dfb-9a49-458f-ac99-4613112062b6 MGI +C3L-01330.WGS.N.hg38 C3L-01330 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2f32ee67-a737-4c5a-b786-9c32514f0ad4/845737d4-d42e-46e9-bf0d-6679c70156c2_gdc_realn.bam 109286955067 BAM hg38 2f32ee67-a737-4c5a-b786-9c32514f0ad4 MGI C3L-01330.WXS.A.hg38 C3L-01330 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/91d991b0-7b23-47d3-b331-fff02de35f91/6bab03bf-7fa4-4ae3-8554-97dd689f7270_wxs_gdc_realn.bam 42008059950 BAM hg38 91d991b0-7b23-47d3-b331-fff02de35f91 MGI C3L-01330.WXS.N.hg38 C3L-01330 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b2a0c4ca-7c82-4d36-bc9a-7dd28ec4f7b9/845737d4-d42e-46e9-bf0d-6679c70156c2_gdc_realn.bam 32739288707 BAM hg38 b2a0c4ca-7c82-4d36-bc9a-7dd28ec4f7b9 MGI C3L-01330.WXS.T.hg38 C3L-01330 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/88b8007a-10b1-4e99-954b-2e99921214bb/593a72ce-4932-42bd-b701-d62a7220ee4f_gdc_realn.bam 39865882180 BAM hg38 88b8007a-10b1-4e99-954b-2e99921214bb MGI @@ -812,6 +848,7 @@ C3L-01453.WXS.T.DEEP_rxJo3W C3L-01453 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac C3L-01453.WXS.T.DEEP_rxJo3W.hg38 C3L-01453 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/42c0a07c-097d-46be-a3e7-185f8e91c8a9/4494960c-3f83-48f8-8cd8-265f77a5aaa6_wxs_gdc_realn.bam 41048585017 BAM hg38 42c0a07c-097d-46be-a3e7-185f8e91c8a9 MGI C3L-01453.WXS.T.hg38.high_cov C3L-01453 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f15f08bf-e6a2-41f6-bafe-76f50b389ef6/9b68ed20-1ebc-417a-acb0-2c684a84c39c_wxs_gdc_realn.bam 76881888207 BAM hg38 f15f08bf-e6a2-41f6-bafe-76f50b389ef6 MGI C3L-01453.WXS.T.high_cov C3L-01453 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f24036e7-4034-429f-a129-bbaaeded4b41/CPT0108400009_1.WholeExome.RP-1303.bam 57007759908 BAM hg19 f24036e7-4034-429f-a129-bbaaeded4b41 MGI +C3L-01455.WGS.N.hg38 C3L-01455 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2166ea32-e285-4f46-babf-70f7c19fea16/cf3222f7-40e1-48fa-af77-ec1ca37435c2_wgs_gdc_realn.bam 78130530534 BAM hg38 2166ea32-e285-4f46-babf-70f7c19fea16 MGI C3L-01455.WXS.A.hg38 C3L-01455 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e1a65824-32c1-49d6-98fb-67ad79f957f1/23e914a3-9538-4816-90ca-95ef0960b86d_wxs_gdc_realn.bam 29364664090 BAM hg38 e1a65824-32c1-49d6-98fb-67ad79f957f1 MGI C3L-01455.WXS.N.hg38 C3L-01455 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7c9485dc-7433-471e-8298-d48100d5c895/cf3222f7-40e1-48fa-af77-ec1ca37435c2_wxs_gdc_realn.bam 30131827599 BAM hg38 7c9485dc-7433-471e-8298-d48100d5c895 MGI C3L-01455.WXS.T.hg38 C3L-01455 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/268f70e1-1b4d-498d-b9dc-54a99b3a161c/d300f0c0-0904-42c8-bddc-973ff46f5994_wxs_gdc_realn.bam 32089993008 BAM hg38 268f70e1-1b4d-498d-b9dc-54a99b3a161c MGI @@ -855,6 +892,7 @@ C3L-01603.WXS.T.HET_roEl76.hg38 C3L-01603 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3L-01603.WXS.T.hg38 C3L-01603 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9cf6e0c1-e777-4ca3-b956-07947dce8216/68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 65921297500 BAM hg38 9cf6e0c1-e777-4ca3-b956-07947dce8216 MGI C3L-01604.WXS.N.hg38 C3L-01604 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/deea94d8-0ba4-4ab3-80b4-c264d2359857/906fd915-ba9a-4efc-9783-e656e5bf0c3a_gdc_realn.bam 45882370885 BAM hg38 deea94d8-0ba4-4ab3-80b4-c264d2359857 MGI C3L-01604.WXS.T.hg38 C3L-01604 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/d71ae2ee-0611-44c1-a7ca-7f7d3a384cf9/7f203466-2a9c-4d39-942b-991a80dd903e_gdc_realn.bam 44315575046 BAM hg38 d71ae2ee-0611-44c1-a7ca-7f7d3a384cf9 MGI +C3L-01606.WGS.N.hg38 C3L-01606 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//44226526-d229-4949-9534-14dc2e600f7d/14f61799-01e6-4bc3-8da4-8d52b448bdaf_wgs_gdc_realn.bam 94768225643 BAM hg38 44226526-d229-4949-9534-14dc2e600f7d MGI C3L-01606.WXS.A.hg38 C3L-01606 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9c5754ff-1b55-40e6-bacc-5fabb58aa7c5/1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wxs_gdc_realn.bam 40925187576 BAM hg38 9c5754ff-1b55-40e6-bacc-5fabb58aa7c5 MGI C3L-01606.WXS.N.hg38 C3L-01606 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ba67c547-f229-44c3-b97d-8a8caea30e47/14f61799-01e6-4bc3-8da4-8d52b448bdaf_wxs_gdc_realn.bam 40451984185 BAM hg38 ba67c547-f229-44c3-b97d-8a8caea30e47 MGI C3L-01606.WXS.T.hg38 C3L-01606 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6cef75a3-5204-4914-948c-673047273d59/ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wxs_gdc_realn.bam 42392754674 BAM hg38 6cef75a3-5204-4914-948c-673047273d59 MGI @@ -867,6 +905,7 @@ C3L-01607.WXS.T.HET_rlGZvK.hg38 C3L-01607 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3L-01607.WXS.T.hg38 C3L-01607 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/78055e79-e0e9-4a8d-989f-1c30f31745cd/0787b6cc-fab1-4c71-8db6-10d6093ce29d_wxs_gdc_realn.bam 46732242259 BAM hg38 78055e79-e0e9-4a8d-989f-1c30f31745cd MGI C3L-01631.WXS.N.hg38 C3L-01631 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fec156ec-e298-4158-9439-c2f5a3122b5b/b79a44e8-8e7c-49bb-9f8e-b16971f96338_wxs_gdc_realn.bam 39922843919 BAM hg38 fec156ec-e298-4158-9439-c2f5a3122b5b MGI C3L-01631.WXS.T.hg38 C3L-01631 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fbcbeae5-7f42-4190-86d5-f040f8542b4c/cfbdbdd3-6e47-49ae-93f0-da90cf5ceafb_wxs_gdc_realn.bam 52366911499 BAM hg38 fbcbeae5-7f42-4190-86d5-f040f8542b4c MGI +C3L-01632.WGS.N.hg38 C3L-01632 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//f811062c-073b-4f15-8c0d-fc6b28a245dc/a1c9700f-78b5-49f7-bb98-15cfdb375f93_wgs_gdc_realn.bam 111279348247 BAM hg38 f811062c-073b-4f15-8c0d-fc6b28a245dc MGI C3L-01632.WXS.A.hg38 C3L-01632 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e700b7a2-85f4-498f-bcbe-a0f87fa1c97f/2db62d68-1c8d-4571-9533-90d9fdb67f20_wxs_gdc_realn.bam 44223152920 BAM hg38 e700b7a2-85f4-498f-bcbe-a0f87fa1c97f MGI C3L-01632.WXS.N.hg38 C3L-01632 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ac5e4172-54a7-4027-a859-dbf0b22c4976/a1c9700f-78b5-49f7-bb98-15cfdb375f93_wxs_gdc_realn.bam 59505667335 BAM hg38 ac5e4172-54a7-4027-a859-dbf0b22c4976 MGI C3L-01632.WXS.T.hg38 C3L-01632 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f2ec66b0-d52f-42f1-ba7a-1084eac1e079/e4173c2d-432b-4e6b-9681-448384e946e0_wxs_gdc_realn.bam 38147978709 BAM hg38 f2ec66b0-d52f-42f1-ba7a-1084eac1e079 MGI @@ -890,6 +929,7 @@ C3L-01662.WXS.T C3L-01662 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import C3L-01662.WXS.T.hg38 C3L-01662 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/0b47149d-59b4-4b38-a4da-09b45b194dc7/d4ac8568-7108-410e-ae03-a8596a8482b8_wxs_gdc_realn.bam 64928295924 BAM hg38 0b47149d-59b4-4b38-a4da-09b45b194dc7 MGI C3L-01662.WXS.T.hg38.high_cov C3L-01662 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7e9f0e06-ebe2-430c-9c76-af6cfd10c833/2a4a409b-1e69-4ada-82ca-aa5fb68d80e2_wxs_gdc_realn.bam 97320065371 BAM hg38 7e9f0e06-ebe2-430c-9c76-af6cfd10c833 MGI C3L-01662.WXS.T.high_cov C3L-01662 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/376fdfac-0fb2-49fc-b668-cba1db9819b6/CPT0092630009_1.WholeExome.RP-1303.bam 69841485124 BAM hg19 376fdfac-0fb2-49fc-b668-cba1db9819b6 MGI +C3L-01663.WGS.N.hg38 C3L-01663 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2ef0c346-cfe6-4acb-9e4f-8eafe124472b/c0be2772-0404-43bf-87d1-057321de4a1c_wgs_gdc_realn.bam 96362297417 BAM hg38 2ef0c346-cfe6-4acb-9e4f-8eafe124472b MGI C3L-01663.WXS.A.hg38 C3L-01663 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7aa6f8a1-aee9-445d-94b1-e2ae8b5150b9/d0ea30eb-f465-4c37-86f7-c259ea148c28_wxs_gdc_realn.bam 48410809586 BAM hg38 7aa6f8a1-aee9-445d-94b1-e2ae8b5150b9 MGI C3L-01663.WXS.N.hg38 C3L-01663 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d739bead-c5df-4370-a6c2-028cd01cca60/c0be2772-0404-43bf-87d1-057321de4a1c_wxs_gdc_realn.bam 46637050281 BAM hg38 d739bead-c5df-4370-a6c2-028cd01cca60 MGI C3L-01663.WXS.T.hg38 C3L-01663 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2fea0ef4-a5dc-4fae-b932-caac7d74dd9b/e712b7fc-5d1d-49f9-b0c7-ec951cf20427_wxs_gdc_realn.bam 44357975751 BAM hg38 2fea0ef4-a5dc-4fae-b932-caac7d74dd9b MGI @@ -908,10 +948,12 @@ C3L-01676.WXS.T.hg38 C3L-01676 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3L-01681.WXS.A.hg38 C3L-01681 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0e701273-2615-4ea5-b312-55091ed83814/04fdbf6b-d048-4d4f-b92e-6705a35015da_wxs_gdc_realn.bam 32586461739 BAM hg38 0e701273-2615-4ea5-b312-55091ed83814 MGI C3L-01681.WXS.N.hg38 C3L-01681 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0525db50-8a29-4d93-b3d3-636df7427c6c/e7ad9a46-6978-4799-b0cb-f3a3e04f4fd5_wxs_gdc_realn.bam 27592992346 BAM hg38 0525db50-8a29-4d93-b3d3-636df7427c6c MGI C3L-01681.WXS.T.hg38 C3L-01681 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/75a28e10-ea97-49d0-9474-c957ad022d9b/6071c180-edd1-48e7-b575-e1c5620dae9b_wxs_gdc_realn.bam 36777716326 BAM hg38 75a28e10-ea97-49d0-9474-c957ad022d9b MGI +C3L-01682.WGS.N.hg38 C3L-01682 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//019fc47f-94a4-4b17-bfe1-3a84f91efb19/48e1f0b6-8ec2-4192-a798-6d9f6f8ab5b2_wgs_gdc_realn.bam 90215753913 BAM hg38 019fc47f-94a4-4b17-bfe1-3a84f91efb19 MGI C3L-01682.WXS.A.hg38 C3L-01682 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a7137df5-0292-44b3-bab4-759718de311e/6ac1e42c-c406-45e7-8b33-b63cd943a9e5_wxs_gdc_realn.bam 44139925893 BAM hg38 a7137df5-0292-44b3-bab4-759718de311e MGI C3L-01682.WXS.N.hg38 C3L-01682 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/53086b68-387b-472c-a6d6-518f32328be7/48e1f0b6-8ec2-4192-a798-6d9f6f8ab5b2_wxs_gdc_realn.bam 52634128339 BAM hg38 53086b68-387b-472c-a6d6-518f32328be7 MGI C3L-01682.WXS.T.hg38 C3L-01682 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0d294e19-0b54-4b90-b951-b4517c8c6270/6ce2608b-d1a9-4ad5-b588-b5b746f9307e_wxs_gdc_realn.bam 53997971540 BAM hg38 0d294e19-0b54-4b90-b951-b4517c8c6270 MGI C3L-01683.Targeted.T C3L-01683 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/32e32b84-b915-48f1-9b3c-7c34f27c3644/CPT0110980010.CustomSelection.RP-1303.PDO-18786.bam 6328057921 BAM hg19 32e32b84-b915-48f1-9b3c-7c34f27c3644 MGI +C3L-01683.WGS.N.hg38 C3L-01683 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//da75beb8-878b-472e-a0bb-86b06f1c468b/4b0c9eb2-41c6-4dee-8f50-05493e5cae42_wgs_gdc_realn.bam 85536536289 BAM hg38 da75beb8-878b-472e-a0bb-86b06f1c468b MGI C3L-01683.WXS.A.hg38 C3L-01683 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b6f8a71c-4c18-4802-86fa-63fd5dbb2d73/361abfae-63f8-4950-94d6-d9301022b9d9_wxs_gdc_realn.bam 34678766575 BAM hg38 b6f8a71c-4c18-4802-86fa-63fd5dbb2d73 MGI C3L-01683.WXS.N.hg38 C3L-01683 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c794fbcc-e3c1-4bc7-b627-bd941df92fa2/4b0c9eb2-41c6-4dee-8f50-05493e5cae42_wxs_gdc_realn.bam 49176119220 BAM hg38 c794fbcc-e3c1-4bc7-b627-bd941df92fa2 MGI C3L-01683.WXS.T.hg38 C3L-01683 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/921e71d0-4543-4669-b2bb-82b6039f5927/aaf33d60-8d89-4373-9f8e-1514cf2bf2ec_wxs_gdc_realn.bam 41752200762 BAM hg38 921e71d0-4543-4669-b2bb-82b6039f5927 MGI @@ -967,6 +1009,7 @@ C3L-01836.WXS.T.HET_ro9412.hg38 C3L-01836 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3L-01836.WXS.T.HET_ro9Jk4 C3L-01836 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/841b31a6-3923-4a45-a5e2-a6d91ba61821/CPT0086880009.WholeExome.RP-1303.bam 23858097221 BAM hg19 841b31a6-3923-4a45-a5e2-a6d91ba61821 MGI C3L-01836.WXS.T.HET_ro9Jk4.hg38 C3L-01836 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f6e9e0d0-018f-4d1e-9e11-2f2c5b0c2f76/39647b55-0a9b-4c6b-83e3-6810740239ce_wxs_gdc_realn.bam 33298026502 BAM hg38 f6e9e0d0-018f-4d1e-9e11-2f2c5b0c2f76 MGI C3L-01836.WXS.T.hg38 C3L-01836 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c889a7bb-fcd6-4246-94a8-324b1d86ef07/8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 49992051960 BAM hg38 c889a7bb-fcd6-4246-94a8-324b1d86ef07 MGI +C3L-01838.WGS.N.hg38 C3L-01838 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//803648bc-6df2-4e23-a5aa-16f4425989e8/c4403a57-0f50-47aa-8620-5271d576d48b_wgs_gdc_realn.bam 120173391896 BAM hg38 803648bc-6df2-4e23-a5aa-16f4425989e8 MGI C3L-01838.WXS.N.hg38 C3L-01838 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a0fdf089-7e23-4c80-9512-fac6fa5d0f88/c4403a57-0f50-47aa-8620-5271d576d48b_wxs_gdc_realn.bam 58339632345 BAM hg38 a0fdf089-7e23-4c80-9512-fac6fa5d0f88 MGI C3L-01838.WXS.T.hg38 C3L-01838 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/33238c06-e075-4303-a204-659c4c9971bd/1860169f-3c25-44c2-b9fd-6349950c3dc8_wxs_gdc_realn.bam 60706591081 BAM hg38 33238c06-e075-4303-a204-659c4c9971bd MGI C3L-01840.WXS.N.hg38 C3L-01840 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4774dc1a-c467-46bc-8fd5-57b71339bb49/bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wxs_gdc_realn.bam 36252189767 BAM hg38 4774dc1a-c467-46bc-8fd5-57b71339bb49 MGI @@ -978,6 +1021,7 @@ C3L-01861.WXS.T.HET_rlrBXK.hg38 C3L-01861 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3L-01861.WXS.T.HET_rlror6 C3L-01861 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/fcf5c23e-6d46-4394-9762-2987efcd5b53/CPT0092300009.WholeExome.RP-1303.bam 22750019576 BAM hg19 fcf5c23e-6d46-4394-9762-2987efcd5b53 MGI C3L-01861.WXS.T.HET_rlror6.hg38 C3L-01861 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4948a696-6c97-40ad-9a89-88797d538070/6eea291f-724e-4891-a6d7-a1244823d6c8_wxs_gdc_realn.bam 31344431338 BAM hg38 4948a696-6c97-40ad-9a89-88797d538070 MGI C3L-01861.WXS.T.hg38 C3L-01861 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eca71105-fdc4-4bd6-957e-ab0bd45d633a/b35c7cca-5e9e-4445-8b60-2427084ce2b7_wxs_gdc_realn.bam 52960795936 BAM hg38 eca71105-fdc4-4bd6-957e-ab0bd45d633a MGI +C3L-01862.WGS.N.hg38 C3L-01862 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a4c24fbd-b085-4bbd-b8d1-068c9eb717aa/57736f53-612c-4e10-a5f2-2bb931276189_wgs_gdc_realn.bam 86753067559 BAM hg38 a4c24fbd-b085-4bbd-b8d1-068c9eb717aa MGI C3L-01862.WXS.N.hg38 C3L-01862 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/de85bf55-9dcb-4a92-b85b-218d58916de2/57736f53-612c-4e10-a5f2-2bb931276189_wxs_gdc_realn.bam 46554500635 BAM hg38 de85bf55-9dcb-4a92-b85b-218d58916de2 MGI C3L-01862.WXS.T.hg38 C3L-01862 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/181112d7-77a9-4439-b080-af2cdad07dd1/fb3d8bc7-276c-4e3d-a25d-f45f8cacb57d_wxs_gdc_realn.bam 38665774426 BAM hg38 181112d7-77a9-4439-b080-af2cdad07dd1 MGI C3L-01864.WXS.N.hg38 C3L-01864 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/12f4261d-c0e1-4088-8f69-003acb306e5a/ebcd3c59-6e3a-4913-8bc4-50fe264a0f67_wxs_gdc_realn.bam 44181681486 BAM hg38 12f4261d-c0e1-4088-8f69-003acb306e5a MGI @@ -990,6 +1034,7 @@ C3L-01882.WXS.N.hg38 C3L-01882 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3 C3L-01882.WXS.T.hg38 C3L-01882 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3617bf1b-0525-4015-b764-cc38abe3bc6a/efba470d-46ea-4677-97ff-8db35dd946d0_wxs_gdc_realn.bam 48769615200 BAM hg38 3617bf1b-0525-4015-b764-cc38abe3bc6a MGI C3L-01883.WXS.N.hg38 C3L-01883 SAR WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6386dbf1-106d-4ce4-80b6-b6f665329a06/f4371810-f448-410f-8449-d7191c670c69_wxs_gdc_realn.bam 49426864790 BAM hg38 6386dbf1-106d-4ce4-80b6-b6f665329a06 MGI C3L-01883.WXS.T.hg38 C3L-01883 SAR WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/76c0e7a5-480a-46d9-9056-620f070b960f/9fc6735e-a654-4e18-b737-79db50f41de2_wxs_gdc_realn.bam 44378885721 BAM hg38 76c0e7a5-480a-46d9-9056-620f070b960f MGI +C3L-01884.WGS.N.hg38 C3L-01884 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6f566337-e30d-446d-ab64-36ac1f18d5ec/fb1f04c2-11b4-46b5-9102-75c435c66d06_wgs_gdc_realn.bam 87466633512 BAM hg38 6f566337-e30d-446d-ab64-36ac1f18d5ec MGI C3L-01884.WXS.N.hg38 C3L-01884 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/50490bfc-a7ba-4b19-b06d-9cd958a4e0e2/fb1f04c2-11b4-46b5-9102-75c435c66d06_wxs_gdc_realn.bam 29548707041 BAM hg38 50490bfc-a7ba-4b19-b06d-9cd958a4e0e2 MGI C3L-01884.WXS.T.hg38 C3L-01884 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7fadc599-50aa-4f5a-84b1-83da53b9fe43/8df61ace-1d12-451f-b246-d43e6e2a026e_wxs_gdc_realn.bam 32129329427 BAM hg38 7fadc599-50aa-4f5a-84b1-83da53b9fe43 MGI C3L-01885.WXS.A.hg38 C3L-01885 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/53229c75-1fe4-49e6-a6e9-76c78f54cb96/6d5aa340-f9fd-4f7e-9a82-0970e7137e07_wxs_gdc_realn.bam 44677632650 BAM hg38 53229c75-1fe4-49e6-a6e9-76c78f54cb96 MGI @@ -998,6 +1043,7 @@ C3L-01885.WXS.T.hg38 C3L-01885 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3L-01887.RNA-Seq.genomic.T.hg38 C3L-01887 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7ed353fe-b41e-4ef3-a0ff-5fc9d4cd9b05/ecdfe25c-9d03-449b-9c2d-22081e956c18.rna_seq.genomic.gdc_realn.bam 8257783113 BAM hg38 7ed353fe-b41e-4ef3-a0ff-5fc9d4cd9b05 MGI C3L-01887.WXS.N.hg38 C3L-01887 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/da78769f-76f2-4083-bdc1-c51f09fa28ac/030a80ff-6a29-4599-b87a-c0811c028057_wxs_gdc_realn.bam 41928830556 BAM hg38 da78769f-76f2-4083-bdc1-c51f09fa28ac MGI C3L-01887.WXS.T.hg38 C3L-01887 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f7ca027d-17a7-4874-98bb-46c97b5abc2d/e50eb6e0-6790-44d4-a6e8-6f9f4f561ee2_wxs_gdc_realn.bam 76002207187 BAM hg38 f7ca027d-17a7-4874-98bb-46c97b5abc2d MGI +C3L-01889.WGS.N.hg38 C3L-01889 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d8620204-9330-4def-9095-858dd79f1a8f/c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wgs_gdc_realn.bam 114785133755 BAM hg38 d8620204-9330-4def-9095-858dd79f1a8f MGI C3L-01889.WXS.A.hg38 C3L-01889 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fa5e9e3f-d86f-49df-ad4f-b35bbb76980e/7e191962-9279-4ced-bad0-d13f9562894c_wxs_gdc_realn.bam 48938467272 BAM hg38 fa5e9e3f-d86f-49df-ad4f-b35bbb76980e MGI C3L-01889.WXS.N.hg38 C3L-01889 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0cfc8eaa-d556-40d2-b131-5ade59b469c8/c2c323c4-a8f3-46e7-8eaf-28154ed2dbd9_wxs_gdc_realn.bam 37297195375 BAM hg38 0cfc8eaa-d556-40d2-b131-5ade59b469c8 MGI C3L-01889.WXS.T.hg38 C3L-01889 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/88d6418c-49f7-4ff8-a22a-ce1d0a783d68/e370556f-98bc-4182-8a75-9ef866159d07_wxs_gdc_realn.bam 42591807846 BAM hg38 88d6418c-49f7-4ff8-a22a-ce1d0a783d68 MGI @@ -1005,6 +1051,7 @@ C3L-01890.WXS.A.hg38 C3L-01890 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3 C3L-01890.WXS.N.hg38 C3L-01890 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/79626fd7-3aa0-4a5d-924e-3a40123766b3/aac3f36d-d012-4c6e-b245-62831ab85bcb_wxs_gdc_realn.bam 44814605858 BAM hg38 79626fd7-3aa0-4a5d-924e-3a40123766b3 MGI C3L-01913.WXS.N.hg38 C3L-01913 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3d24c2e4-e333-44f8-ba03-82c17755ee54/4801be53-7ce4-439a-8b46-0bfed31c515d_wxs_gdc_realn.bam 37801903274 BAM hg38 3d24c2e4-e333-44f8-ba03-82c17755ee54 MGI C3L-01913.WXS.T.hg38 C3L-01913 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a1eed798-0d7a-4bbd-b5b7-c331152cfba7/7513413b-82b1-40da-b449-fd38788a2ab4_wxs_gdc_realn.bam 65710695751 BAM hg38 a1eed798-0d7a-4bbd-b5b7-c331152cfba7 MGI +C3L-01924.WGS.N.hg38 C3L-01924 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//0298bc8f-6f52-40d5-bbd1-73c180fb6c47/d7d49f54-2e47-4f16-a3ee-48c85116d4ca_wgs_gdc_realn.bam 86087021911 BAM hg38 0298bc8f-6f52-40d5-bbd1-73c180fb6c47 MGI C3L-01924.WXS.A.hg38 C3L-01924 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fe136d24-0401-4307-bc8f-10f69de15286/6181eeb8-6921-444e-94a1-4da0098707a5_wxs_gdc_realn.bam 40173227093 BAM hg38 fe136d24-0401-4307-bc8f-10f69de15286 MGI C3L-01924.WXS.N.hg38 C3L-01924 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c923a07f-99a1-41fc-8981-dd61f7965f1a/d7d49f54-2e47-4f16-a3ee-48c85116d4ca_wxs_gdc_realn.bam 48511497104 BAM hg38 c923a07f-99a1-41fc-8981-dd61f7965f1a MGI C3L-01924.WXS.T.hg38 C3L-01924 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b626240c-4a92-4c1d-ae72-391ed665a517/6ff5d3f7-220b-41fc-9a8b-71827ce106df_wxs_gdc_realn.bam 39612866816 BAM hg38 b626240c-4a92-4c1d-ae72-391ed665a517 MGI @@ -1074,24 +1121,30 @@ C3L-02121.WXS.N.hg38 C3L-02121 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cpta C3L-02121.WXS.T.hg38 C3L-02121 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/609caaa7-9840-4008-bb43-c1262e27bd2c/97676e1b-baf7-4ce8-a31c-85f48297f123_wxs_gdc_realn.bam 57017045966 BAM hg38 609caaa7-9840-4008-bb43-c1262e27bd2c MGI C3L-02125.WXS.N.hg38 C3L-02125 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/6fff8d96-caf5-4bc7-a4d7-fc090baf8bcc/4b853998-7ba1-4649-9783-e09a313508c2_wxs_gdc_realn.bam 36506921854 BAM hg38 6fff8d96-caf5-4bc7-a4d7-fc090baf8bcc MGI C3L-02125.WXS.T.hg38 C3L-02125 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/789bdc1b-c5f2-45a1-a8d6-ae3798faf717/78aac7c2-2610-4aab-9451-3949fd11a120_wxs_gdc_realn.bam 32929063394 BAM hg38 789bdc1b-c5f2-45a1-a8d6-ae3798faf717 MGI +C3L-02127.WGS.N.hg38 C3L-02127 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//caa9bd32-438d-4827-9835-351c908f2e9e/5e39c390-85ac-4582-9f12-a6792994fc69_wgs_gdc_realn.bam 81925801403 BAM hg38 caa9bd32-438d-4827-9835-351c908f2e9e MGI C3L-02127.WXS.N.hg38 C3L-02127 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e51e79c4-6465-4d37-834a-06eb40ebcfdc/5e39c390-85ac-4582-9f12-a6792994fc69_wxs_gdc_realn.bam 36129229246 BAM hg38 e51e79c4-6465-4d37-834a-06eb40ebcfdc MGI C3L-02127.WXS.T.hg38 C3L-02127 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c464bc7c-0990-477d-8ad0-c18fce5e8b70/735d360a-8d51-45b9-817e-d97c12e86c0a_wxs_gdc_realn.bam 44656383085 BAM hg38 c464bc7c-0990-477d-8ad0-c18fce5e8b70 MGI C3L-02129.WXS.N.hg38 C3L-02129 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d708f0fa-314a-48f6-a20c-60c78c15aa2e/475e3abc-03e4-4447-b6ac-839fc068f5ea_wxs_gdc_realn.bam 31165027289 BAM hg38 d708f0fa-314a-48f6-a20c-60c78c15aa2e MGI C3L-02129.WXS.T.hg38 C3L-02129 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/55b1ffba-76ba-4e18-9598-3f316509545c/5f10744c-0ae5-4f7e-a3bc-34a201b73375_wxs_gdc_realn.bam 32314276515 BAM hg38 55b1ffba-76ba-4e18-9598-3f316509545c MGI +C3L-02130.WGS.N.hg38 C3L-02130 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//8490c690-dac7-4a72-b2bf-1991fbe05c36/c742c34f-6323-463f-97b2-8670c2f4e950_wgs_gdc_realn.bam 79570021758 BAM hg38 8490c690-dac7-4a72-b2bf-1991fbe05c36 MGI C3L-02130.WXS.N.hg38 C3L-02130 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/22df6e39-0947-4591-82c0-6be07cbb8dbe/c742c34f-6323-463f-97b2-8670c2f4e950_wxs_gdc_realn.bam 49700178986 BAM hg38 22df6e39-0947-4591-82c0-6be07cbb8dbe MGI C3L-02130.WXS.T.hg38 C3L-02130 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a8b8f6dd-6bba-4cb8-9e54-0b994c32c452/d8ab669a-e58a-4f91-8d3a-0ab143c4a2ad_wxs_gdc_realn.bam 42913664306 BAM hg38 a8b8f6dd-6bba-4cb8-9e54-0b994c32c452 MGI +C3L-02163.WGS.N.hg38 C3L-02163 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b3e28b59-bc29-4464-8d3d-205a7ead299c/3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wgs_gdc_realn.bam 84456783103 BAM hg38 b3e28b59-bc29-4464-8d3d-205a7ead299c MGI C3L-02163.WXS.N.hg38 C3L-02163 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5efb9f9b-8b67-4185-90af-3b6742fe3a23/3d1292bd-dfff-44c5-a6ad-b4bb3452f79c_wxs_gdc_realn.bam 35716585239 BAM hg38 5efb9f9b-8b67-4185-90af-3b6742fe3a23 MGI C3L-02163.WXS.T.hg38 C3L-02163 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/de5f9de8-a1b2-4d7a-bb21-e568208241e9/c3fcf397-78d9-40cb-a915-24bbc9a5cb59_wxs_gdc_realn.bam 34722563570 BAM hg38 de5f9de8-a1b2-4d7a-bb21-e568208241e9 MGI +C3L-02164.WGS.N.hg38 C3L-02164 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//f6d387d3-30cb-496b-a274-50d628d3124d/cb3de721-41d7-4780-a377-47238d576458_wgs_gdc_realn.bam 82549938680 BAM hg38 f6d387d3-30cb-496b-a274-50d628d3124d MGI C3L-02164.WXS.N.hg38 C3L-02164 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2619f144-48ba-440e-9317-d91207766303/cb3de721-41d7-4780-a377-47238d576458_wxs_gdc_realn.bam 37432081911 BAM hg38 2619f144-48ba-440e-9317-d91207766303 MGI C3L-02164.WXS.T.hg38 C3L-02164 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cae3426d-a2fb-46ba-852a-73364bf7f28d/692c864f-e57b-478b-ade7-7e8ef994bac6_wxs_gdc_realn.bam 35554493969 BAM hg38 cae3426d-a2fb-46ba-852a-73364bf7f28d MGI C3L-02165.WXS.A.hg38 C3L-02165 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fe289a7d-799c-4201-8c8e-95ad18e90fd0/ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wxs_gdc_realn.bam 36413909677 BAM hg38 fe289a7d-799c-4201-8c8e-95ad18e90fd0 MGI C3L-02165.WXS.N.hg38 C3L-02165 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c0bac254-c578-433f-866b-45c5cadb3b81/c34832b9-9c05-4ac5-a581-a59d59d2e8bb_wxs_gdc_realn.bam 46700593099 BAM hg38 c0bac254-c578-433f-866b-45c5cadb3b81 MGI C3L-02165.WXS.T.hg38 C3L-02165 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8120f159-e48c-4db7-9993-aaaf42cfbd70/de799385-c88e-4f46-a502-b0c4d6b0a6a9_wxs_gdc_realn.bam 25451318152 BAM hg38 8120f159-e48c-4db7-9993-aaaf42cfbd70 MGI +C3L-02168.WGS.N.hg38 C3L-02168 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//5266fb4a-b4bf-4025-bb28-82fdd77837e0/0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wgs_gdc_realn.bam 89124593493 BAM hg38 5266fb4a-b4bf-4025-bb28-82fdd77837e0 MGI C3L-02168.WXS.N.hg38 C3L-02168 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c47e4f68-1b43-479c-af27-f585fb5347f3/0ccfe2e3-b8d8-46f7-9330-adeb25be08e0_wxs_gdc_realn.bam 47387802631 BAM hg38 c47e4f68-1b43-479c-af27-f585fb5347f3 MGI C3L-02168.WXS.T.hg38 C3L-02168 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9643871e-6530-4d1e-920e-530f826ebdaf/4a02531c-43ca-4755-b48a-f9732230695f_wxs_gdc_realn.bam 46704831083 BAM hg38 9643871e-6530-4d1e-920e-530f826ebdaf MGI C3L-02169.WXS.A.hg38 C3L-02169 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/95ce1d8a-444b-4e9c-8b57-f6906f4704ca/6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wxs_gdc_realn.bam 36469932533 BAM hg38 95ce1d8a-444b-4e9c-8b57-f6906f4704ca MGI C3L-02169.WXS.N.hg38 C3L-02169 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/56701f8e-cbcb-4670-909d-0550fe95986a/650a2f0e-c2b7-49d8-a61a-d6b420f000e2_wxs_gdc_realn.bam 30295540866 BAM hg38 56701f8e-cbcb-4670-909d-0550fe95986a MGI C3L-02169.WXS.T.hg38 C3L-02169 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/de1ccc9d-ab42-4c82-b1a7-918cf2cc21a1/12a95ce5-d1e9-4029-8e73-ac1eb765082f_wxs_gdc_realn.bam 35273434511 BAM hg38 de1ccc9d-ab42-4c82-b1a7-918cf2cc21a1 MGI +C3L-02170.WGS.N.hg38 C3L-02170 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e7b0ff87-766c-4143-978f-f5f108948904/dd54f8e5-09cc-4925-86e5-797f029e52cb_wgs_gdc_realn.bam 86046076265 BAM hg38 e7b0ff87-766c-4143-978f-f5f108948904 MGI C3L-02170.WXS.N.hg38 C3L-02170 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bbf1978b-1db4-4656-a991-70479d05d1f6/dd54f8e5-09cc-4925-86e5-797f029e52cb_wxs_gdc_realn.bam 26757263345 BAM hg38 bbf1978b-1db4-4656-a991-70479d05d1f6 MGI C3L-02170.WXS.T.hg38 C3L-02170 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4fd70b41-4cd0-4908-9142-5a155538ff12/5222af15-8276-44d6-927e-e46b9d44f28d_wxs_gdc_realn.bam 40442856125 BAM hg38 4fd70b41-4cd0-4908-9142-5a155538ff12 MGI C3L-02175.WXS.N.hg38 C3L-02175 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f6570ece-999f-4dcf-9dbe-253a821240af/6eadb488-015f-427c-8194-9709dff9facf_wxs_gdc_realn.bam 42288858151 BAM hg38 f6570ece-999f-4dcf-9dbe-253a821240af MGI @@ -1114,12 +1167,14 @@ C3L-02214.WXS.T.hg38 C3L-02214 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3L-02216.WXS.A.hg38 C3L-02216 UCEC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4572539a-54d2-4a98-947e-cb0a86a22cf8/9219b702-e723-4d6a-b2a3-a09dbd583c05_wxs_gdc_realn.bam 51695909384 BAM hg38 4572539a-54d2-4a98-947e-cb0a86a22cf8 MGI C3L-02216.WXS.N.hg38 C3L-02216 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7a28f467-24d1-4eb4-ba72-e06010cbe706/c80497f4-88bd-4256-a557-cae11b6ed74d_wxs_gdc_realn.bam 37787251761 BAM hg38 7a28f467-24d1-4eb4-ba72-e06010cbe706 MGI C3L-02216.WXS.T.hg38 C3L-02216 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/72d192c6-0504-4022-9e1e-fc2f08b42d50/79ceb6e6-77e8-4ca0-bd3f-53f466ebec94_wxs_gdc_realn.bam 34795744446 BAM hg38 72d192c6-0504-4022-9e1e-fc2f08b42d50 MGI +C3L-02219.WGS.N.hg38 C3L-02219 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ee4383ce-637e-4d79-9f75-34de05a2e0ec/fa479329-731f-43cb-aaa8-35851c12da27_wgs_gdc_realn.bam 83611601754 BAM hg38 ee4383ce-637e-4d79-9f75-34de05a2e0ec MGI C3L-02219.WXS.A.hg38 C3L-02219 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5ec63922-4ede-4a8b-804c-20d76141152c/2fe74fe3-b44f-4d4d-82a6-4ac00f46f343_wxs_gdc_realn.bam 50835644500 BAM hg38 5ec63922-4ede-4a8b-804c-20d76141152c MGI C3L-02219.WXS.N.hg38 C3L-02219 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/957524de-e064-45b2-b7e4-21afff187be1/fa479329-731f-43cb-aaa8-35851c12da27_wxs_gdc_realn.bam 51052207833 BAM hg38 957524de-e064-45b2-b7e4-21afff187be1 MGI C3L-02219.WXS.T.hg38 C3L-02219 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e6421728-d85a-488a-ac5a-66b304de7588/8c0016cb-0881-4ed7-b781-e1ec7987cd27_wxs_gdc_realn.bam 41436630663 BAM hg38 e6421728-d85a-488a-ac5a-66b304de7588 MGI C3L-02220.WXS.A.hg38 C3L-02220 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b9182210-2e93-493b-974c-a98dd53d36fc/71c5938f-6621-4252-9c6a-801c3dab59ac_wxs_gdc_realn.bam 33358913547 BAM hg38 b9182210-2e93-493b-974c-a98dd53d36fc MGI C3L-02220.WXS.N.hg38 C3L-02220 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b4be1a54-5d63-4f29-bc5d-473db4987da6/cf340692-0b4f-4388-91af-ee6435c00602_wxs_gdc_realn.bam 36637620689 BAM hg38 b4be1a54-5d63-4f29-bc5d-473db4987da6 MGI C3L-02220.WXS.T.hg38 C3L-02220 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c7b0b45e-09b1-4921-8e24-918ba56a333b/06cc347e-536f-40fe-96dd-799cdedecbf5_wxs_gdc_realn.bam 51462620045 BAM hg38 c7b0b45e-09b1-4921-8e24-918ba56a333b MGI +C3L-02345.WGS.N.hg38 C3L-02345 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//0093e67c-d2e2-4fbb-a121-d20689aa2a9a/731f2bed-8215-40fc-a04f-4e73f526767c_wgs_gdc_realn.bam 87160440093 BAM hg38 0093e67c-d2e2-4fbb-a121-d20689aa2a9a MGI C3L-02345.WXS.A.hg38 C3L-02345 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/dd8f7685-e250-472e-9d73-58905e82d65d/a3d69712-233d-44be-9250-d34413b0a823_wxs_gdc_realn.bam 38714457635 BAM hg38 dd8f7685-e250-472e-9d73-58905e82d65d MGI C3L-02345.WXS.N.hg38 C3L-02345 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/33015297-0979-437b-b923-816699c2cc83/731f2bed-8215-40fc-a04f-4e73f526767c_wxs_gdc_realn.bam 49588501488 BAM hg38 33015297-0979-437b-b923-816699c2cc83 MGI C3L-02345.WXS.T.hg38 C3L-02345 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/74c85236-3626-426a-8c3c-d0185c9520e7/2ff27509-55ea-48db-9380-41a440e2cf4d_wxs_gdc_realn.bam 38749221225 BAM hg38 74c85236-3626-426a-8c3c-d0185c9520e7 MGI @@ -1129,11 +1184,14 @@ C3L-02346.WXS.T.hg38 C3L-02346 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3L-02347.WXS.A.hg38 C3L-02347 UCEC WXS tissue_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/7f79bb4d-bab5-4083-9082-cbffafe05c24/abb5244a-d9bd-4220-907c-85ed67bbb1ca_wxs_gdc_realn.bam 26196289925 BAM hg38 7f79bb4d-bab5-4083-9082-cbffafe05c24 MGI C3L-02347.WXS.N.hg38 C3L-02347 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d4040ace-c044-4f49-a271-7dcf2ae56d61/f313f074-39ce-4b85-b089-14dd0f779eef_wxs_gdc_realn.bam 39645313258 BAM hg38 d4040ace-c044-4f49-a271-7dcf2ae56d61 MGI C3L-02347.WXS.T.hg38 C3L-02347 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/68a1f482-caac-4f8c-9d33-62740dbbbd45/7656e417-b4b0-47d8-9ab4-5da0c7df5f2c_wxs_gdc_realn.bam 30302882928 BAM hg38 68a1f482-caac-4f8c-9d33-62740dbbbd45 MGI +C3L-02348.WGS.N.hg38 C3L-02348 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//518cb3c1-9b81-464a-9de0-b7ddbd3a3250/d140c210-45d6-4aa0-9f78-cde6b7a29207_wgs_gdc_realn.bam 79368968869 BAM hg38 518cb3c1-9b81-464a-9de0-b7ddbd3a3250 MGI C3L-02348.WXS.A.hg38 C3L-02348 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/069fc6cd-e124-46e5-bc07-59946e67f0de/c8f77a00-dd00-44bc-8a2e-6c802f975b40_wxs_gdc_realn.bam 61252663449 BAM hg38 069fc6cd-e124-46e5-bc07-59946e67f0de MGI C3L-02348.WXS.N.hg38 C3L-02348 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/53b61719-ee3c-4685-8858-b324f6afa0bf/d140c210-45d6-4aa0-9f78-cde6b7a29207_wxs_gdc_realn.bam 50469998413 BAM hg38 53b61719-ee3c-4685-8858-b324f6afa0bf MGI C3L-02348.WXS.T.hg38 C3L-02348 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7dde3446-fb2e-4207-a30d-c7708d8b26e5/4a14d77a-990e-4cba-854c-856a434fa63a_wxs_gdc_realn.bam 40774793992 BAM hg38 7dde3446-fb2e-4207-a30d-c7708d8b26e5 MGI +C3L-02349.WGS.N.hg38 C3L-02349 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//1261730f-702c-4781-9d77-bd1c59244821/3ba3953b-5543-477c-9bb0-4433cd773a8f_wgs_gdc_realn.bam 87153972921 BAM hg38 1261730f-702c-4781-9d77-bd1c59244821 MGI C3L-02349.WXS.N.hg38 C3L-02349 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c624be4d-286d-4776-b77e-d249fbe7b17e/3ba3953b-5543-477c-9bb0-4433cd773a8f_wxs_gdc_realn.bam 41412423446 BAM hg38 c624be4d-286d-4776-b77e-d249fbe7b17e MGI C3L-02349.WXS.T.hg38 C3L-02349 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1d1d3870-7d61-4f63-8cdb-2c0a07ef22b7/d26de4cd-762b-4e7e-bb50-e98df6cf7077_wxs_gdc_realn.bam 35937703549 BAM hg38 1d1d3870-7d61-4f63-8cdb-2c0a07ef22b7 MGI +C3L-02350.WGS.N.hg38 C3L-02350 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4dacf396-02e5-436c-ab15-6d0909282714/2c8cbf2e-1ac6-46cb-9315-3690d564180f_wgs_gdc_realn.bam 93696489662 BAM hg38 4dacf396-02e5-436c-ab15-6d0909282714 MGI C3L-02350.WXS.A.hg38 C3L-02350 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a45ec5c6-480d-448f-8bda-f36fdacbea72/e7f74934-b812-43c5-94f5-2c87f74b7f6f_wxs_gdc_realn.bam 40248991114 BAM hg38 a45ec5c6-480d-448f-8bda-f36fdacbea72 MGI C3L-02350.WXS.N.hg38 C3L-02350 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d475354c-cd2f-4da7-9dac-78491c5924f9/2c8cbf2e-1ac6-46cb-9315-3690d564180f_wxs_gdc_realn.bam 45189829485 BAM hg38 d475354c-cd2f-4da7-9dac-78491c5924f9 MGI C3L-02350.WXS.T.hg38 C3L-02350 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bdc4a149-c480-4dbe-8b32-66a0856c4e7d/c3ec294d-2862-4510-ba10-a7ea7d3ca87b_wxs_gdc_realn.bam 45512655229 BAM hg38 bdc4a149-c480-4dbe-8b32-66a0856c4e7d MGI @@ -1147,11 +1205,13 @@ C3L-02354.WXS.N.hg38 C3L-02354 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cpta C3L-02354.WXS.T.hg38 C3L-02354 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/be6cfd59-5662-40f8-a9d1-409d18549b4d/41fa6fa9-57db-459a-b50a-6fb9d6ff8b77_wxs_gdc_realn.bam 45361383285 BAM hg38 be6cfd59-5662-40f8-a9d1-409d18549b4d MGI C3L-02357.WXS.N.hg38 C3L-02357 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dbfdf524-d634-4cf3-b8c0-c770b02b3b00/69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wxs_gdc_realn.bam 32230346086 BAM hg38 dbfdf524-d634-4cf3-b8c0-c770b02b3b00 MGI C3L-02357.WXS.T.hg38 C3L-02357 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/11071103-8409-4215-bc03-770f16b958c6/f43f1826-ba38-4389-ac95-dd6097317421_wxs_gdc_realn.bam 35880744595 BAM hg38 11071103-8409-4215-bc03-770f16b958c6 MGI +C3L-02358.WGS.N.hg38 C3L-02358 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4c108047-55fd-4108-915e-3435a5fab0ce/2df2a777-76f3-43fd-8d48-ac283e79c4eb_wgs_gdc_realn.bam 85424473542 BAM hg38 4c108047-55fd-4108-915e-3435a5fab0ce MGI C3L-02358.WXS.N.hg38 C3L-02358 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/55b76b44-854d-417f-a02f-eb7f21e51974/2df2a777-76f3-43fd-8d48-ac283e79c4eb_wxs_gdc_realn.bam 31835938786 BAM hg38 55b76b44-854d-417f-a02f-eb7f21e51974 MGI C3L-02358.WXS.T.hg38 C3L-02358 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b19b1144-5656-4d2a-82e2-923e2f43bfef/61f5b700-0bb6-424d-aab5-ecf10d369c99_wxs_gdc_realn.bam 36520078239 BAM hg38 b19b1144-5656-4d2a-82e2-923e2f43bfef MGI C3L-02364.WXS.A.hg38 C3L-02364 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/dca7c30b-5013-476b-9984-ba1479a7a21f/a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wxs_gdc_realn.bam 30213100412 BAM hg38 dca7c30b-5013-476b-9984-ba1479a7a21f MGI C3L-02364.WXS.N.hg38 C3L-02364 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/afe5004f-2697-474a-b81e-f7987f7cd071/be8f1237-9410-41ce-b51f-f44bf6373a98_wxs_gdc_realn.bam 29379243534 BAM hg38 afe5004f-2697-474a-b81e-f7987f7cd071 MGI C3L-02364.WXS.T.hg38 C3L-02364 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6aeae5c1-1438-4c81-b877-3fbc09c1a6da/e132f354-c423-4c15-bc4b-20373f2f57b0_wxs_gdc_realn.bam 26340453776 BAM hg38 6aeae5c1-1438-4c81-b877-3fbc09c1a6da MGI +C3L-02365.WGS.N.hg38 C3L-02365 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//5a832acb-f0ed-4bac-b73b-fe54daf62b1a/bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wgs_gdc_realn.bam 92748330856 BAM hg38 5a832acb-f0ed-4bac-b73b-fe54daf62b1a MGI C3L-02365.WXS.A.hg38 C3L-02365 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e57292ba-138c-4fda-bd41-6f45f211a0a2/d06fc371-1140-4b9b-85dc-0f57abda4664_wxs_gdc_realn.bam 44834783361 BAM hg38 e57292ba-138c-4fda-bd41-6f45f211a0a2 MGI C3L-02365.WXS.N.hg38 C3L-02365 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b32dc9a8-2412-4aaf-aa8c-1e87ac06598e/bf23ccb9-5658-4f3f-84ff-f6e9359b4ab7_wxs_gdc_realn.bam 45908325616 BAM hg38 b32dc9a8-2412-4aaf-aa8c-1e87ac06598e MGI C3L-02365.WXS.T.hg38 C3L-02365 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9c7a472d-ee9a-4408-a8e1-08893843d913/1377635a-6a69-4d8f-a252-4e9ffb6d3c9a_wxs_gdc_realn.bam 55216112491 BAM hg38 9c7a472d-ee9a-4408-a8e1-08893843d913 MGI @@ -1199,6 +1259,7 @@ C3L-02468.WXS.T.hg38 C3L-02468 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_ C3L-02504.RNA-Seq.genomic.T.hg38 C3L-02504 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/16e7fc1c-b124-4dd4-b633-f05316897ec3/71f3dcab-b871-4e7f-b68a-43d27e5840e1.rna_seq.genomic.gdc_realn.bam 8833711279 BAM hg38 16e7fc1c-b124-4dd4-b633-f05316897ec3 MGI C3L-02504.WXS.N.hg38 C3L-02504 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff07f11b-862a-4137-8e9a-0a609735348c/40f6448c-51b7-499e-8c86-300966f87b99_wxs_gdc_realn.bam 38502204845 BAM hg38 ff07f11b-862a-4137-8e9a-0a609735348c MGI C3L-02504.WXS.T.hg38 C3L-02504 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f04a4040-c88c-4925-9881-a4542b13c817/df794db3-ed91-4798-a664-49ff826f1131_wxs_gdc_realn.bam 34169597250 BAM hg38 f04a4040-c88c-4925-9881-a4542b13c817 MGI +C3L-02508.WGS.N.hg38 C3L-02508 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2509fb9f-8364-40ac-a019-9ad013618340/e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wgs_gdc_realn.bam 89294281274 BAM hg38 2509fb9f-8364-40ac-a019-9ad013618340 MGI C3L-02508.WXS.A.hg38 C3L-02508 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/73327dc1-eea4-42fe-884b-0773b974af81/0b76afcf-e5dc-45d5-9d4f-45eb93e83b71_wxs_gdc_realn.bam 60878714696 BAM hg38 73327dc1-eea4-42fe-884b-0773b974af81 MGI C3L-02508.WXS.N.hg38 C3L-02508 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9d738aaf-635d-49a5-893f-42852075b115/e6224d19-f9dd-498b-bb7e-5c7fb847dd52_wxs_gdc_realn.bam 41788538764 BAM hg38 9d738aaf-635d-49a5-893f-42852075b115 MGI C3L-02508.WXS.T.hg38 C3L-02508 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/84e915a3-de8a-4bd4-b3ed-e3467f424e88/0196af9e-08f9-41a7-9f95-38ccf723f916_wxs_gdc_realn.bam 56319684986 BAM hg38 84e915a3-de8a-4bd4-b3ed-e3467f424e88 MGI @@ -1216,14 +1277,17 @@ C3L-02544.WXS.N.hg38 C3L-02544 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3 C3L-02544.WXS.T.hg38 C3L-02544 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c74beb83-14ad-4e82-ad82-f1dc5736f37f/2117b6c5-8d1c-4d2d-82d9-84ebc43d3642_wxs_gdc_realn.bam 35403318118 BAM hg38 c74beb83-14ad-4e82-ad82-f1dc5736f37f MGI C3L-02545.WXS.N.hg38 C3L-02545 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e82606e0-2b2d-4db5-929b-e2b4b4eccc02/c318b321-0a84-424a-897e-68cbd9f5b838_wxs_gdc_realn.bam 31300845145 BAM hg38 e82606e0-2b2d-4db5-929b-e2b4b4eccc02 MGI C3L-02545.WXS.T.hg38 C3L-02545 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d8bcef8d-af0b-4d75-adcf-d7e678876aad/7cb30cf9-6a37-4102-b3aa-ebc9666f8900_wxs_gdc_realn.bam 30986530120 BAM hg38 d8bcef8d-af0b-4d75-adcf-d7e678876aad MGI +C3L-02546.WGS.N.hg38 C3L-02546 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2ed949aa-4ed0-41f6-8bee-ad3a4ba74d83/800c8094-c41a-48ff-8af9-955d58e3db66_wgs_gdc_realn.bam 89632146514 BAM hg38 2ed949aa-4ed0-41f6-8bee-ad3a4ba74d83 MGI C3L-02546.WXS.N.hg38 C3L-02546 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0719d8d5-91a8-45b2-8bd3-6417ae7b6797/800c8094-c41a-48ff-8af9-955d58e3db66_wxs_gdc_realn.bam 38253659834 BAM hg38 0719d8d5-91a8-45b2-8bd3-6417ae7b6797 MGI C3L-02546.WXS.T.hg38 C3L-02546 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/65166d23-2a24-4924-b728-c09e4279aa41/4df9fe66-df3a-4c95-9e8a-99ff3c3ef043_wxs_gdc_realn.bam 37307837135 BAM hg38 65166d23-2a24-4924-b728-c09e4279aa41 MGI +C3L-02549.WGS.N.hg38 C3L-02549 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//56355cf3-e713-4f84-8341-34a831669dce/3993fcff-1eb7-4269-b65d-17692a77b538_wgs_gdc_realn.bam 88723889621 BAM hg38 56355cf3-e713-4f84-8341-34a831669dce MGI C3L-02549.WXS.A.hg38 C3L-02549 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/00eb892c-da5f-4e69-8c0b-6e2c1502f62c/d7dd9bcd-738a-4c20-8a7f-26ab1b436806_wxs_gdc_realn.bam 52087894702 BAM hg38 00eb892c-da5f-4e69-8c0b-6e2c1502f62c MGI C3L-02549.WXS.N.hg38 C3L-02549 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff823df2-eaf4-4f3d-ab59-6036bc57a13a/3993fcff-1eb7-4269-b65d-17692a77b538_wxs_gdc_realn.bam 33794028135 BAM hg38 ff823df2-eaf4-4f3d-ab59-6036bc57a13a MGI C3L-02549.WXS.T.hg38 C3L-02549 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/37089f84-3ea7-46b6-9bd3-bc0246e31969/277a56c0-5e19-4292-951f-6b10ac741447_wxs_gdc_realn.bam 40890473336 BAM hg38 37089f84-3ea7-46b6-9bd3-bc0246e31969 MGI C3L-02551.WXS.A.hg38 C3L-02551 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e9ccff09-1f15-483b-9453-b4e3827eb004/3e963853-6bb2-4a64-b030-c8072ed444c0_wxs_gdc_realn.bam 32644163112 BAM hg38 e9ccff09-1f15-483b-9453-b4e3827eb004 MGI C3L-02551.WXS.N.hg38 C3L-02551 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/82cc5582-c9a8-4039-80b5-c96a7ba0dd65/1fb328fe-22e7-498e-b000-3dc3d9c718fa_wxs_gdc_realn.bam 32977526671 BAM hg38 82cc5582-c9a8-4039-80b5-c96a7ba0dd65 MGI C3L-02551.WXS.T.hg38 C3L-02551 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/14626088-c896-4b8a-ba97-1fd0db30eb2e/525cb672-9543-414c-9d01-9bb1f81ae753_wxs_gdc_realn.bam 48317653627 BAM hg38 14626088-c896-4b8a-ba97-1fd0db30eb2e MGI +C3L-02552.WGS.N.hg38 C3L-02552 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//16c519d7-2727-4650-a5ca-09a534507d21/ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wgs_gdc_realn.bam 82568662923 BAM hg38 16c519d7-2727-4650-a5ca-09a534507d21 MGI C3L-02552.WXS.N.hg38 C3L-02552 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cea1e94c-03a7-498c-ba3b-86b4eba52707/ab4e3671-ff37-4ec3-8a7a-9d46b33633e3_wxs_gdc_realn.bam 29849029135 BAM hg38 cea1e94c-03a7-498c-ba3b-86b4eba52707 MGI C3L-02552.WXS.T.hg38 C3L-02552 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fdfa0afe-c2ce-4cf7-9a74-78cebde5d447/6890c26c-2da6-4867-aece-58b9af97bd4d_wxs_gdc_realn.bam 33519648270 BAM hg38 fdfa0afe-c2ce-4cf7-9a74-78cebde5d447 MGI C3L-02553.WXS.N.hg38 C3L-02553 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0f9db919-f741-429b-9aa3-2eb4bfeb0eb0/46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wxs_gdc_realn.bam 38479520042 BAM hg38 0f9db919-f741-429b-9aa3-2eb4bfeb0eb0 MGI @@ -1274,16 +1338,21 @@ C3L-02616.WXS.N.hg38 C3L-02616 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3- C3L-02616.WXS.T.hg38 C3L-02616 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c2bb57ca-10e0-4ce2-b232-c9089a6b75c0/5168a152-2084-4c61-ab12-1602325fe82e_wxs_gdc_realn.bam 30673050729 BAM hg38 c2bb57ca-10e0-4ce2-b232-c9089a6b75c0 MGI C3L-02617.WXS.N.hg38.high_cov C3L-02617 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bd478f09-96b6-4479-87ad-2566ff4b5377/f13bac4a-9644-49b5-b293-9a1c7bbc403f_wxs_gdc_realn.bam 54963054270 BAM hg38 bd478f09-96b6-4479-87ad-2566ff4b5377 MGI C3L-02617.WXS.T.RDNA_o2mjl6L.hg38 C3L-02617 HNSCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/8fc8a057-c842-4ff3-bf06-39b309a28350/be017248-e1fd-45fd-b185-d0e102ada4e8_wxs_gdc_realn.bam 31873820322 BAM hg38 8fc8a057-c842-4ff3-bf06-39b309a28350 MGI +C3L-02619.WGS.N.hg38 C3L-02619 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//52912028-5b24-424a-9690-188bd3bf7b1b/b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wgs_gdc_realn.bam 77954383541 BAM hg38 52912028-5b24-424a-9690-188bd3bf7b1b MGI C3L-02619.WXS.N.hg38 C3L-02619 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/34a67dfe-a2d6-474f-a7e9-3c29d9dae9f8/b7a3d3c7-0b0d-4244-881b-333f1c1e38e9_wxs_gdc_realn.bam 39062911134 BAM hg38 34a67dfe-a2d6-474f-a7e9-3c29d9dae9f8 MGI C3L-02619.WXS.T.hg38 C3L-02619 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5381b2f8-b689-49d4-a760-407462e0ba6e/f693b499-5f81-4c9a-a653-c2f989293a5f_wxs_gdc_realn.bam 41733564115 BAM hg38 5381b2f8-b689-49d4-a760-407462e0ba6e MGI C3L-02621.WXS.N.hg38 C3L-02621 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fd50b411-9585-42dc-adbb-a6dcaed253ad/02f60b7f-627c-467f-82d6-b766f213c238_wxs_gdc_realn.bam 39020161451 BAM hg38 fd50b411-9585-42dc-adbb-a6dcaed253ad MGI C3L-02621.WXS.T.hg38 C3L-02621 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cdabe1b1-bec3-4fc9-9d68-adb41cf03a19/4f3ae9cd-6aa5-4c20-b619-c170c5ae7723_wxs_gdc_realn.bam 34462296906 BAM hg38 cdabe1b1-bec3-4fc9-9d68-adb41cf03a19 MGI +C3L-02624.WGS.N.hg38 C3L-02624 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//69daca40-9f0f-43bd-bfef-9d49b9ec7055/1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wgs_gdc_realn.bam 93093483277 BAM hg38 69daca40-9f0f-43bd-bfef-9d49b9ec7055 MGI C3L-02624.WXS.N.hg38 C3L-02624 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/48d7558e-19fa-4c43-b7a9-9856b66a9a8a/1f4a1020-576e-49f9-a1f9-4fe5c87941b7_wxs_gdc_realn.bam 28011162155 BAM hg38 48d7558e-19fa-4c43-b7a9-9856b66a9a8a MGI C3L-02624.WXS.T.hg38 C3L-02624 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/df87b19b-a336-4b6b-985e-d9446044870d/7a444a8f-b557-47ba-bfdb-241bfb165c82_wxs_gdc_realn.bam 26181998581 BAM hg38 df87b19b-a336-4b6b-985e-d9446044870d MGI +C3L-02625.WGS.N.hg38 C3L-02625 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//020dc66a-179f-4169-a126-39220d939638/0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wgs_gdc_realn.bam 78884685977 BAM hg38 020dc66a-179f-4169-a126-39220d939638 MGI C3L-02625.WXS.N.hg38 C3L-02625 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2f6f9af5-6508-440e-8574-4a543fe0a178/0a96746b-2a5a-4b98-9b2e-7d3207b988fd_wxs_gdc_realn.bam 29276956433 BAM hg38 2f6f9af5-6508-440e-8574-4a543fe0a178 MGI C3L-02625.WXS.T.hg38 C3L-02625 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c68a5bf3-4377-43a7-8f93-42ecd178bc3c/55194cd1-6ee4-4c6c-ab7e-ff73a429a1a9_wxs_gdc_realn.bam 35995008962 BAM hg38 c68a5bf3-4377-43a7-8f93-42ecd178bc3c MGI +C3L-02627.WGS.N.hg38 C3L-02627 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ef6b3cab-f35e-4315-8762-b289ca547298/5ef6c53e-92c4-4938-add5-99d12373b127_wgs_gdc_realn.bam 77925801567 BAM hg38 ef6b3cab-f35e-4315-8762-b289ca547298 MGI C3L-02627.WXS.N.hg38 C3L-02627 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/aea309eb-a90e-42aa-9be6-30c600769711/5ef6c53e-92c4-4938-add5-99d12373b127_wxs_gdc_realn.bam 40790098816 BAM hg38 aea309eb-a90e-42aa-9be6-30c600769711 MGI C3L-02627.WXS.T.hg38 C3L-02627 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/48780329-8ba0-439a-a720-13c3213bc925/99cc8223-ac71-4ad0-bbe4-f1e683686c6d_wxs_gdc_realn.bam 41574623283 BAM hg38 48780329-8ba0-439a-a720-13c3213bc925 MGI +C3L-02629.WGS.N.hg38 C3L-02629 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ac7e6d30-242f-4c4a-9482-1c53fdd54e57/bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wgs_gdc_realn.bam 87870129416 BAM hg38 ac7e6d30-242f-4c4a-9482-1c53fdd54e57 MGI C3L-02629.WXS.N.hg38 C3L-02629 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/899cf82a-0664-4a9b-9b46-03a762cbfef6/bf479ce0-c55c-4c56-bf9c-67c949a3fb06_wxs_gdc_realn.bam 33360412160 BAM hg38 899cf82a-0664-4a9b-9b46-03a762cbfef6 MGI C3L-02629.WXS.T.hg38 C3L-02629 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/51e541b7-9f04-40ff-8dc6-9221d1fc1089/03fcf9b5-9cc3-4f38-b28b-f6fd65bab61e_wxs_gdc_realn.bam 26676891735 BAM hg38 51e541b7-9f04-40ff-8dc6-9221d1fc1089 MGI C3L-02642.RNA-Seq.genomic.T.hg38 C3L-02642 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c14fba2b-44b9-444e-9da8-93cf4da2d4f7/71d3f3ec-6a82-4497-895c-86cd6b27ea44.rna_seq.genomic.gdc_realn.bam 7699514218 BAM hg38 c14fba2b-44b9-444e-9da8-93cf4da2d4f7 MGI @@ -1294,12 +1363,16 @@ C3L-02643.WXS.N.hg38 C3L-02643 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3- C3L-02643.WXS.T.hg38 C3L-02643 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/115bc719-1999-4d63-b788-a2e2107430d3/6d8f8127-ca6c-4e64-9d5f-a92bc489b9e8_wxs_gdc_realn.bam 28268902693 BAM hg38 115bc719-1999-4d63-b788-a2e2107430d3 MGI C3L-02644.WXS.N C3L-02644 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fc2e0bde-e7ba-4acb-8f99-eebdbb532cda/CPT0227900002.WholeExome.RP-1303.bam 27011094237 BAM hg19 fc2e0bde-e7ba-4acb-8f99-eebdbb532cda MGI C3L-02644.WXS.T C3L-02644 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/64803679-490c-4aa5-8cb4-dc077cf3c19a/CPT0227810007.WholeExome.RP-1303.bam 16766796957 BAM hg19 64803679-490c-4aa5-8cb4-dc077cf3c19a MGI +C3L-02646.WGS.N.hg38 C3L-02646 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ab08e047-4767-496d-8028-4150f9381989/a0d0f408-012f-4580-b28d-aaad9ef55a9f_wgs_gdc_realn.bam 84464346595 BAM hg38 ab08e047-4767-496d-8028-4150f9381989 MGI C3L-02646.WXS.N.hg38 C3L-02646 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3ec28d87-2158-4bc0-a3b4-7a1c7d9baff8/a0d0f408-012f-4580-b28d-aaad9ef55a9f_wxs_gdc_realn.bam 23162153244 BAM hg38 3ec28d87-2158-4bc0-a3b4-7a1c7d9baff8 MGI C3L-02646.WXS.T.hg38 C3L-02646 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b8b6ee6f-d4e3-40b6-926f-aa52eaa5189d/ffb7f59b-2554-45af-a0be-67a3c8c475e0_wxs_gdc_realn.bam 26923683521 BAM hg38 b8b6ee6f-d4e3-40b6-926f-aa52eaa5189d MGI +C3L-02648.WGS.N.hg38 C3L-02648 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6de08dda-1701-465b-8ec2-e16b812b4daa/f67b7239-b480-45f2-99f9-8d791898bc76_wgs_gdc_realn.bam 86561325429 BAM hg38 6de08dda-1701-465b-8ec2-e16b812b4daa MGI C3L-02648.WXS.N.hg38 C3L-02648 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a839aaf0-87e8-4e89-a730-0cd8c2755ab6/f67b7239-b480-45f2-99f9-8d791898bc76_wxs_gdc_realn.bam 40637543975 BAM hg38 a839aaf0-87e8-4e89-a730-0cd8c2755ab6 MGI C3L-02648.WXS.T.hg38 C3L-02648 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2db9ae7f-ef2e-4f53-80fd-57ea9461656f/ef93c6db-775c-4fb4-9ccf-0a154af43b67_wxs_gdc_realn.bam 29256497051 BAM hg38 2db9ae7f-ef2e-4f53-80fd-57ea9461656f MGI +C3L-02649.WGS.N.hg38 C3L-02649 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//58138bab-7fb8-46cd-9447-69b243eb6adb/72c299ee-e3f5-424b-b8e1-53670cb12243_wgs_gdc_realn.bam 88133938320 BAM hg38 58138bab-7fb8-46cd-9447-69b243eb6adb MGI C3L-02649.WXS.N.hg38 C3L-02649 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/27360f7f-8ce2-4af0-a09e-907e71b0f0f8/72c299ee-e3f5-424b-b8e1-53670cb12243_wxs_gdc_realn.bam 33917655167 BAM hg38 27360f7f-8ce2-4af0-a09e-907e71b0f0f8 MGI C3L-02649.WXS.T.hg38 C3L-02649 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e057c584-c090-4f21-b1a4-f7a93be5076a/0f3d9c3e-663e-4a22-9700-4d5b0b379643_wxs_gdc_realn.bam 37220092398 BAM hg38 e057c584-c090-4f21-b1a4-f7a93be5076a MGI +C3L-02650.WGS.N.hg38 C3L-02650 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//125bd299-2408-4825-86f0-c7dbd224c1ab/016f1a26-26fd-47b4-97f2-e1be18215a1a_wgs_gdc_realn.bam 87897608634 BAM hg38 125bd299-2408-4825-86f0-c7dbd224c1ab MGI C3L-02650.WXS.N.hg38 C3L-02650 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/07577c36-658a-4b52-97c4-bf6f818dae04/016f1a26-26fd-47b4-97f2-e1be18215a1a_wxs_gdc_realn.bam 30748561655 BAM hg38 07577c36-658a-4b52-97c4-bf6f818dae04 MGI C3L-02650.WXS.T.hg38 C3L-02650 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/01931dab-32c0-407b-a8de-b3e2216d257e/4562d6e2-e2a9-4bc2-84c3-69e1d9fd3663_wxs_gdc_realn.bam 27490845409 BAM hg38 01931dab-32c0-407b-a8de-b3e2216d257e MGI C3L-02651.WXS.N.hg38 C3L-02651 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/31310f51-6711-494c-8ed4-f1ff18b29f3d/bef61092-18b4-4faa-9ca2-e2df017cd929_wxs_gdc_realn.bam 29263848723 BAM hg38 31310f51-6711-494c-8ed4-f1ff18b29f3d MGI @@ -1307,6 +1380,7 @@ C3L-02651.WXS.T.hg38 C3L-02651 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3L-02654.WXS.A.hg38 C3L-02654 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8cd296e1-2fd9-4f7a-bba4-67d6bdebcf41/89c3681e-9002-4026-9a2c-9f955c714643_wxs_gdc_realn.bam 58069615119 BAM hg38 8cd296e1-2fd9-4f7a-bba4-67d6bdebcf41 MGI C3L-02654.WXS.N.hg38 C3L-02654 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cfcbfce1-9939-4fa6-bf02-758c2c705652/1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wxs_gdc_realn.bam 40769095618 BAM hg38 cfcbfce1-9939-4fa6-bf02-758c2c705652 MGI C3L-02654.WXS.T.hg38 C3L-02654 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1b9fbe1c-a3d7-4780-bd7d-0f42c084a445/aa3dd3eb-75de-489f-bece-cf760cdbbf1f_wxs_gdc_realn.bam 36342998223 BAM hg38 1b9fbe1c-a3d7-4780-bd7d-0f42c084a445 MGI +C3L-02660.WGS.N.hg38 C3L-02660 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6ec09acd-1d07-4040-8d36-c147a3f86972/24b56530-504e-4423-a833-238e49cb0d18_wgs_gdc_realn.bam 95035411940 BAM hg38 6ec09acd-1d07-4040-8d36-c147a3f86972 MGI C3L-02660.WXS.N.hg38 C3L-02660 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8123ed94-befe-4a1f-9cc1-234fbd1f8504/24b56530-504e-4423-a833-238e49cb0d18_wxs_gdc_realn.bam 36908150834 BAM hg38 8123ed94-befe-4a1f-9cc1-234fbd1f8504 MGI C3L-02660.WXS.T.hg38 C3L-02660 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fdec05f0-1ba5-4b72-8419-dfbe26275b9f/de5ff6c5-79fc-4c44-9d16-79b73e2e8e06_wxs_gdc_realn.bam 27523946363 BAM hg38 fdec05f0-1ba5-4b72-8419-dfbe26275b9f MGI C3L-02661.WXS.A.hg38 C3L-02661 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0c66fd21-1350-4e46-a47b-43399d2fa9bf/1fc581d1-064b-4142-805d-4567983c81b8_wxs_gdc_realn.bam 28456350582 BAM hg38 0c66fd21-1350-4e46-a47b-43399d2fa9bf MGI @@ -1314,8 +1388,10 @@ C3L-02661.WXS.N.hg38 C3L-02661 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3- C3L-02661.WXS.T.hg38 C3L-02661 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0a9f0c8c-1d97-45e2-9676-8e950999659d/b1b5326f-11ac-4f1e-86b8-da1238672b6e_wxs_gdc_realn.bam 34693138193 BAM hg38 0a9f0c8c-1d97-45e2-9676-8e950999659d MGI C3L-02662.WXS.N C3L-02662 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/11e768f6-702e-4217-9405-d7e2e8b3549a/CPT0267300002.WholeExome.RP-1303.bam 32172440712 BAM hg19 11e768f6-702e-4217-9405-d7e2e8b3549a MGI C3L-02662.WXS.T C3L-02662 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/548aa728-a7c4-4fd3-b9a1-56debfc0fb08/CPT0267260007.WholeExome.RP-1303.bam 18842860859 BAM hg19 548aa728-a7c4-4fd3-b9a1-56debfc0fb08 MGI +C3L-02665.WGS.N.hg38 C3L-02665 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//c8276e38-9884-486f-a161-fe9cb40fed6f/0340681b-f04e-4e51-8a70-319412cbe7f4_wgs_gdc_realn.bam 94340005437 BAM hg38 c8276e38-9884-486f-a161-fe9cb40fed6f MGI C3L-02665.WXS.N.hg38 C3L-02665 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9db5fa11-bd55-4e4e-b441-21e5c745a879/0340681b-f04e-4e51-8a70-319412cbe7f4_wxs_gdc_realn.bam 33439410567 BAM hg38 9db5fa11-bd55-4e4e-b441-21e5c745a879 MGI C3L-02665.WXS.T.hg38 C3L-02665 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eb4eb84a-346f-4c1a-acd7-fec383c35d9d/6673be4a-ae2d-48ae-a437-b47350c5a48c_wxs_gdc_realn.bam 35856639443 BAM hg38 eb4eb84a-346f-4c1a-acd7-fec383c35d9d MGI +C3L-02669.WGS.N.hg38 C3L-02669 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//61410268-e0d8-40a3-9b7b-a81fb9005901/76b8bd0d-a73f-44c1-95f4-e059baba9717_wgs_gdc_realn.bam 80025204906 BAM hg38 61410268-e0d8-40a3-9b7b-a81fb9005901 MGI C3L-02669.WXS.N.hg38 C3L-02669 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/60a2da6d-6b97-4294-b514-bcba20bd27d0/76b8bd0d-a73f-44c1-95f4-e059baba9717_wxs_gdc_realn.bam 31654712800 BAM hg38 60a2da6d-6b97-4294-b514-bcba20bd27d0 MGI C3L-02669.WXS.T.hg38 C3L-02669 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b390c351-79c1-445f-9ca6-e9d745acd5a3/3683abf1-0725-4c58-aa84-dda4cc85ed85_wxs_gdc_realn.bam 30600985401 BAM hg38 b390c351-79c1-445f-9ca6-e9d745acd5a3 MGI C3L-02701.Targeted.T C3L-02701 PDA Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5c8ad51e-9364-48df-b88e-a77e2f3c9406/CPT0227930007.CustomSelection.RP-1303.PDO-18786.bam 5841968173 BAM hg19 5c8ad51e-9364-48df-b88e-a77e2f3c9406 MGI @@ -1373,6 +1449,7 @@ C3L-02890.WXS.N C3L-02890 PDA WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3L-02890.WXS.N.hg38 C3L-02890 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/085bc27e-577d-4c57-b74a-479692f48de0/2358f2ec-b9f0-44f6-be2c-270b74ce2482_wxs_gdc_realn.bam 35701990276 BAM hg38 085bc27e-577d-4c57-b74a-479692f48de0 MGI C3L-02890.WXS.T.hg38.high_cov C3L-02890 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/db40c095-79eb-4ac4-b006-de7092adf87c/348499bf-d9cb-4bc4-baa4-7b72b3f62956_wxs_gdc_realn.bam 71572146270 BAM hg38 db40c095-79eb-4ac4-b006-de7092adf87c MGI C3L-02890.WXS.T.high_cov C3L-02890 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/20b93b4c-60d9-4bb1-981e-1531cb3c9151/CPT0166650009.WholeExome.RP-1303.bam 51526884822 BAM hg19 20b93b4c-60d9-4bb1-981e-1531cb3c9151 MGI +C3L-02891.WGS.N.hg38 C3L-02891 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//18cc4bc2-f7a7-4314-9b26-a1174489b4b5/dc7a5978-8435-4a74-a321-9975d1b9db7f_wgs_gdc_realn.bam 90780849091 BAM hg38 18cc4bc2-f7a7-4314-9b26-a1174489b4b5 MGI C3L-02891.WXS.N.hg38 C3L-02891 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c15eaede-f5db-4ac7-a092-a780a9644873/dc7a5978-8435-4a74-a321-9975d1b9db7f_wxs_gdc_realn.bam 36466893765 BAM hg38 c15eaede-f5db-4ac7-a092-a780a9644873 MGI C3L-02891.WXS.T.hg38 C3L-02891 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6eda6841-b626-4429-8e88-d79952fc3648/b341203a-de92-4bb8-9749-ccb9721ec873_wxs_gdc_realn.bam 30646282965 BAM hg38 6eda6841-b626-4429-8e88-d79952fc3648 MGI C3L-02893.WXS.A.hg38 C3L-02893 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/26a1285b-0312-40cd-b83e-536e93ea43e7/e31d95da-7853-4d6b-96dd-bc411049691d_wxs_gdc_realn.bam 30583756872 BAM hg38 26a1285b-0312-40cd-b83e-536e93ea43e7 MGI @@ -1391,6 +1468,7 @@ C3L-02899.WXS.T.high_cov C3L-02899 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/G C3L-02900.RNA-Seq.genomic.T.hg38 C3L-02900 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/020aefed-e399-4ae7-816d-df9a175036c3/19731962-7807-4792-a519-8f93504900d5.rna_seq.genomic.gdc_realn.bam 8315286351 BAM hg38 020aefed-e399-4ae7-816d-df9a175036c3 MGI C3L-02900.WXS.N.hg38 C3L-02900 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d3bf35f7-29fa-4fb0-9930-9c858b616338/6264f251-942e-4eb8-a787-58c3a28a6d66_wxs_gdc_realn.bam 32458431549 BAM hg38 d3bf35f7-29fa-4fb0-9930-9c858b616338 MGI C3L-02900.WXS.T.hg38 C3L-02900 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/be8dfbc7-4022-4180-a77a-7098bfe6a03f/31973fc9-0507-456d-be4a-1a696ea3cf34_wxs_gdc_realn.bam 29349254639 BAM hg38 be8dfbc7-4022-4180-a77a-7098bfe6a03f MGI +C3L-02951.WGS.N.hg38 C3L-02951 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a9df6ab2-8f0a-485e-a5e7-1dbe20db6169/4df1dc43-1efa-4b94-b67a-20022c5480d9_wgs_gdc_realn.bam 74168944308 BAM hg38 a9df6ab2-8f0a-485e-a5e7-1dbe20db6169 MGI C3L-02951.WXS.N.hg38 C3L-02951 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e8287cd5-5064-4d21-acb7-0bf366e3a13a/4df1dc43-1efa-4b94-b67a-20022c5480d9_wxs_gdc_realn.bam 46811514575 BAM hg38 e8287cd5-5064-4d21-acb7-0bf366e3a13a MGI C3L-02951.WXS.T.hg38 C3L-02951 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2a3c944f-607b-4ab1-8829-3dd2a77da2ef/773198bc-d32a-4963-b33a-af0793609e9a_wxs_gdc_realn.bam 32313366048 BAM hg38 2a3c944f-607b-4ab1-8829-3dd2a77da2ef MGI C3L-02953.WXS.N.hg38 C3L-02953 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/5aaf068a-0d37-4dab-a45f-7ea22c8b2ca4/9bc1bf3d-4c79-4144-bef0-90730270b764_wxs_gdc_realn.bam 30788634180 BAM hg38 5aaf068a-0d37-4dab-a45f-7ea22c8b2ca4 MGI @@ -1410,15 +1488,19 @@ C3L-02958.WXS.T.hg38 C3L-02958 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3L-02961.WXS.A.hg38 C3L-02961 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/49c6b143-af4d-46a0-8e90-580fa4d388cb/0c81e2f8-7f99-440b-adfe-562c0b2e39fa_wxs_gdc_realn.bam 38625341502 BAM hg38 49c6b143-af4d-46a0-8e90-580fa4d388cb MGI C3L-02961.WXS.N.hg38 C3L-02961 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f23ca910-722d-4d32-888e-7c69f63737ad/c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wxs_gdc_realn.bam 29061613805 BAM hg38 f23ca910-722d-4d32-888e-7c69f63737ad MGI C3L-02961.WXS.T.hg38 C3L-02961 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9e41f283-126c-40ae-a797-14cc7d39bd95/a32ad1ee-0504-4bcf-93e1-6f4156fe9ed7_wxs_gdc_realn.bam 31770273638 BAM hg38 9e41f283-126c-40ae-a797-14cc7d39bd95 MGI +C3L-02963.WGS.N.hg38 C3L-02963 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//8016d2ee-3e26-4e8f-8084-fe3500f137f9/d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wgs_gdc_realn.bam 93217700054 BAM hg38 8016d2ee-3e26-4e8f-8084-fe3500f137f9 MGI C3L-02963.WXS.N.hg38 C3L-02963 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7af14987-fede-4019-89a3-30af14f759ba/d2eb2c7d-21e6-4bbd-b56e-5dd987c3cf88_wxs_gdc_realn.bam 36161276731 BAM hg38 7af14987-fede-4019-89a3-30af14f759ba MGI C3L-02963.WXS.T.hg38 C3L-02963 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/740272e7-44af-4ec9-a3e1-50dd4f3518f1/85b7bdbb-a618-4313-8c74-e456b77e87c7_wxs_gdc_realn.bam 32767503611 BAM hg38 740272e7-44af-4ec9-a3e1-50dd4f3518f1 MGI +C3L-02964.WGS.N.hg38 C3L-02964 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a90895bc-ccad-45a0-82bf-61a5687c0fef/dec8fef6-3592-4fb4-b0e0-5ade153deb94_wgs_gdc_realn.bam 85170591679 BAM hg38 a90895bc-ccad-45a0-82bf-61a5687c0fef MGI C3L-02964.WXS.N.hg38 C3L-02964 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fe1700a9-ae84-45d9-9932-91f0ecd566f7/dec8fef6-3592-4fb4-b0e0-5ade153deb94_wxs_gdc_realn.bam 37590415541 BAM hg38 fe1700a9-ae84-45d9-9932-91f0ecd566f7 MGI C3L-02964.WXS.T.hg38 C3L-02964 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a3738c39-d74c-438a-a367-2240ccada09c/4fafc3a0-d12b-49b5-94ed-8c778bf2901e_wxs_gdc_realn.bam 34760862674 BAM hg38 a3738c39-d74c-438a-a367-2240ccada09c MGI C3L-02967.WXS.A.hg38 C3L-02967 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1faa1dcc-5a30-4f5d-9967-8336721a39a0/fff5f229-c510-4b99-8b44-b302fb895f43_wxs_gdc_realn.bam 34306887372 BAM hg38 1faa1dcc-5a30-4f5d-9967-8336721a39a0 MGI C3L-02967.WXS.N.hg38 C3L-02967 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8f4a8c80-8bee-45bf-b28f-7e29840c65e6/1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wxs_gdc_realn.bam 36836328732 BAM hg38 8f4a8c80-8bee-45bf-b28f-7e29840c65e6 MGI C3L-02967.WXS.T.hg38 C3L-02967 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5b8654df-1722-4c07-b5f5-18aae3daf35c/5b10df83-32cd-4037-a8c7-108a0db69540_wxs_gdc_realn.bam 37917467236 BAM hg38 5b8654df-1722-4c07-b5f5-18aae3daf35c MGI +C3L-02968.WGS.N.hg38 C3L-02968 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6360b9dc-ba81-4a30-b7e0-4ef9f66ca0ef/e610b46f-890b-4983-92e8-8068231b156f_wgs_gdc_realn.bam 87170458713 BAM hg38 6360b9dc-ba81-4a30-b7e0-4ef9f66ca0ef MGI C3L-02968.WXS.N.hg38 C3L-02968 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/45d7684e-34ea-4a8e-8125-1af1b198ce24/e610b46f-890b-4983-92e8-8068231b156f_wxs_gdc_realn.bam 40162952762 BAM hg38 45d7684e-34ea-4a8e-8125-1af1b198ce24 MGI C3L-02968.WXS.T.hg38 C3L-02968 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d85db18a-86e2-4a70-b290-245f2e3e3990/db738e74-7347-44e7-93c3-128a4de48f7d_wxs_gdc_realn.bam 52572236594 BAM hg38 d85db18a-86e2-4a70-b290-245f2e3e3990 MGI +C3L-02969.WGS.N.hg38 C3L-02969 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//bea6c5f0-48a8-4bdb-b1c7-f5edb92eca84/0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wgs_gdc_realn.bam 88144850145 BAM hg38 bea6c5f0-48a8-4bdb-b1c7-f5edb92eca84 MGI C3L-02969.WXS.N.hg38 C3L-02969 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8dbe033e-6dd6-4d4b-a249-84a116bb801e/0c90e64c-7a0d-44dc-b1a4-1d88d43e1dde_wxs_gdc_realn.bam 39688928666 BAM hg38 8dbe033e-6dd6-4d4b-a249-84a116bb801e MGI C3L-02969.WXS.T.hg38 C3L-02969 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b99facdb-d15c-4c60-8305-c0554ba68b09/6fa25117-7dbe-4157-991c-8df8657eda53_wxs_gdc_realn.bam 34826510368 BAM hg38 b99facdb-d15c-4c60-8305-c0554ba68b09 MGI C3L-02970.RNA-Seq.genomic.T.hg38 C3L-02970 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1785f3e5-c89c-4cf0-9d43-a8a30b684fa6/215ee23f-0bee-4208-a70d-f188b8d73b79.rna_seq.genomic.gdc_realn.bam 8057196911 BAM hg38 1785f3e5-c89c-4cf0-9d43-a8a30b684fa6 MGI @@ -1463,6 +1545,7 @@ C3L-03268.WXS.T.hg38 C3L-03268 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3L-03271.WXS.A.hg38 C3L-03271 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff2b0e82-c064-43da-a94f-df99093a9941/8edc9d2b-08fc-4f02-bf6f-be4dbb5409f7_wxs_gdc_realn.bam 27814325035 BAM hg38 ff2b0e82-c064-43da-a94f-df99093a9941 MGI C3L-03271.WXS.N.hg38 C3L-03271 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e04a60d6-16f7-4194-a160-cec7e0aecf24/561e422d-e4db-4213-8bde-505d3cf49cf7_wxs_gdc_realn.bam 32909584549 BAM hg38 e04a60d6-16f7-4194-a160-cec7e0aecf24 MGI C3L-03271.WXS.T.hg38 C3L-03271 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5132dfb4-2478-4eb4-80c0-64dd44f603f6/ce89aed6-750b-4d18-8f28-d4940dc0b546_wxs_gdc_realn.bam 30442895664 BAM hg38 5132dfb4-2478-4eb4-80c0-64dd44f603f6 MGI +C3L-03272.WGS.N.hg38 C3L-03272 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//34b966ea-7310-4aad-ab2f-3abbff502e84/463e4a08-38ab-408f-ac18-8f6899380f8c_wgs_gdc_realn.bam 92663627417 BAM hg38 34b966ea-7310-4aad-ab2f-3abbff502e84 MGI C3L-03272.WXS.N.hg38 C3L-03272 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/baf9a640-5ccc-4af5-93b1-e0c0f3d51d97/463e4a08-38ab-408f-ac18-8f6899380f8c_wxs_gdc_realn.bam 41000207872 BAM hg38 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 MGI C3L-03272.WXS.T.hg38 C3L-03272 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/caaab6de-d522-4508-aca4-9451506e9692/8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wxs_gdc_realn.bam 25283322306 BAM hg38 caaab6de-d522-4508-aca4-9451506e9692 MGI C3L-03350.Targeted.T C3L-03350 PDA Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b42c6b7f-1d74-404e-942d-0e4965e6c37b/CPT0198310008.CustomSelection.RP-1303.PDO-18786.bam 4431220616 BAM hg19 b42c6b7f-1d74-404e-942d-0e4965e6c37b MGI @@ -1562,6 +1645,7 @@ C3L-03639.WXS.T.high_cov C3L-03639 PDA WXS tumor /gscmnt/gc2619/dinglab_cptac3/G C3L-03642.WXS.A.hg38 C3L-03642 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/da768d35-2441-40f1-8cca-7637109824d7/697da1aa-701c-49f2-9451-e8cbc149f95a_wxs_gdc_realn.bam 36370594682 BAM hg38 da768d35-2441-40f1-8cca-7637109824d7 MGI C3L-03642.WXS.N.hg38 C3L-03642 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3bcdcede-39d7-4bd6-987b-a9f617d485c3/92c97b23-8846-4d06-b2b2-670f5bb378b7_wxs_gdc_realn.bam 46293400276 BAM hg38 3bcdcede-39d7-4bd6-987b-a9f617d485c3 MGI C3L-03642.WXS.T.hg38 C3L-03642 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fdc7b8a4-efdd-4e1a-be12-967295a2ed75/edea2be0-85ea-4fc2-956e-8dd70dc6286e_wxs_gdc_realn.bam 37302438794 BAM hg38 fdc7b8a4-efdd-4e1a-be12-967295a2ed75 MGI +C3L-03678.WGS.N.hg38 C3L-03678 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4ed1b874-7344-4479-b1ea-77d7dec97040/0acf70c7-0014-4247-b7e3-674203be4121_wgs_gdc_realn.bam 95620288289 BAM hg38 4ed1b874-7344-4479-b1ea-77d7dec97040 MGI C3L-03678.WXS.N.hg38 C3L-03678 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/26abe382-68a7-49e1-8739-0012eccaaa2c/0acf70c7-0014-4247-b7e3-674203be4121_wxs_gdc_realn.bam 36639058133 BAM hg38 26abe382-68a7-49e1-8739-0012eccaaa2c MGI C3L-03678.WXS.T.hg38 C3L-03678 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7f1c96d6-8cab-436a-a46d-b55d08be1e07/e2a1d57f-6440-4101-81b8-226346ca0ae2_wxs_gdc_realn.bam 44605962217 BAM hg38 7f1c96d6-8cab-436a-a46d-b55d08be1e07 MGI C3L-03679.WXS.A.hg38 C3L-03679 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/318b6214-e66b-4fe7-a37c-3484a167a465/0f49740e-6037-4b71-88f2-0ecbdb776eef_wxs_gdc_realn.bam 30843141334 BAM hg38 318b6214-e66b-4fe7-a37c-3484a167a465 MGI @@ -1604,12 +1688,16 @@ C3L-03747.WXS.T.hg38 C3L-03747 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_i C3L-03748.RNA-Seq.genomic.T.hg38 C3L-03748 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bfb42ac0-be91-43b5-bc52-b401b00042d6/f9eb1a8f-7812-44d5-a19d-22350c1f5145.rna_seq.genomic.gdc_realn.bam 8045500845 BAM hg38 bfb42ac0-be91-43b5-bc52-b401b00042d6 MGI C3L-03748.WXS.N.hg38 C3L-03748 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fd813224-f411-40be-93fd-86d17ba90dd1/cedd1569-11a3-49f4-a54c-36f18c88e15b_wxs_gdc_realn.bam 42135220830 BAM hg38 fd813224-f411-40be-93fd-86d17ba90dd1 MGI C3L-03748.WXS.T.hg38 C3L-03748 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e3fb355d-984d-41bf-a279-5464c72171e7/9bc0478a-68bb-4e5d-a4a8-7b3383218e8c_wxs_gdc_realn.bam 28933196213 BAM hg38 e3fb355d-984d-41bf-a279-5464c72171e7 MGI +C3L-03961.WGS.N.hg38 C3L-03961 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//5330bea7-b3fe-45b7-9078-1a99f80b2157/dec7ca10-fdd0-4772-9083-99eb76cada5a_wgs_gdc_realn.bam 80586310895 BAM hg38 5330bea7-b3fe-45b7-9078-1a99f80b2157 MGI C3L-03961.WXS.N.hg38 C3L-03961 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4ad060d2-2819-4203-8e6c-92041543ab83/dec7ca10-fdd0-4772-9083-99eb76cada5a_wxs_gdc_realn.bam 33319536001 BAM hg38 4ad060d2-2819-4203-8e6c-92041543ab83 MGI C3L-03961.WXS.T.RDNA_o2KQ273.hg38 C3L-03961 LSCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/dfaf297d-c282-4eeb-8e2c-9f67d9c13b01/3610bec5-9fcf-4587-8898-7af65b5599ce_wxs_gdc_realn.bam 35196222802 BAM hg38 dfaf297d-c282-4eeb-8e2c-9f67d9c13b01 MGI +C3L-03962.WGS.N.hg38 C3L-03962 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//5b1df6c8-e378-4d45-91e0-142ad3ee7a87/02e2349f-c2ee-479c-81e2-1ce03fb3485e_wgs_gdc_realn.bam 105084569419 BAM hg38 5b1df6c8-e378-4d45-91e0-142ad3ee7a87 MGI C3L-03962.WXS.N.hg38 C3L-03962 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2fe277de-9a3a-47e9-8a69-33ed1f7da0ff/02e2349f-c2ee-479c-81e2-1ce03fb3485e_wxs_gdc_realn.bam 32413838670 BAM hg38 2fe277de-9a3a-47e9-8a69-33ed1f7da0ff MGI C3L-03962.WXS.T.hg38 C3L-03962 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d541a90b-a0cc-4cf5-bd39-83e9a90c9809/fa7582c9-d7a9-42d8-8fe2-e358ef604ee8_wxs_gdc_realn.bam 45456438728 BAM hg38 d541a90b-a0cc-4cf5-bd39-83e9a90c9809 MGI +C3L-03963.WGS.N.hg38 C3L-03963 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//98737e65-d960-4a55-be3e-39b0f1372dad/d14970f8-64a4-4186-bec7-ccdf5e2a0505_wgs_gdc_realn.bam 77982457295 BAM hg38 98737e65-d960-4a55-be3e-39b0f1372dad MGI C3L-03963.WXS.N.hg38 C3L-03963 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/04555288-8327-4491-89cd-a06803176765/d14970f8-64a4-4186-bec7-ccdf5e2a0505_wxs_gdc_realn.bam 35174358636 BAM hg38 04555288-8327-4491-89cd-a06803176765 MGI C3L-03963.WXS.T.hg38 C3L-03963 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff302d49-b116-4560-a382-d018b852b5d5/d2d9af9d-8785-44b7-b3f2-3359c624c777_wxs_gdc_realn.bam 31663441009 BAM hg38 ff302d49-b116-4560-a382-d018b852b5d5 MGI +C3L-03965.WGS.N.hg38 C3L-03965 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d4473ede-affb-4d91-a124-be84b540a9b4/9b912644-c500-4133-a97b-215ecd2c4688_wgs_gdc_realn.bam 90428975998 BAM hg38 d4473ede-affb-4d91-a124-be84b540a9b4 MGI C3L-03965.WXS.N.hg38 C3L-03965 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1b195337-628b-4637-9c1d-f36d99df8e98/9b912644-c500-4133-a97b-215ecd2c4688_wxs_gdc_realn.bam 52992469744 BAM hg38 1b195337-628b-4637-9c1d-f36d99df8e98 MGI C3L-03965.WXS.T.hg38 C3L-03965 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/895e5823-7469-4c9c-b6ef-a0dd36248635/2e89777b-80db-4682-8fd6-a3e5e2263f36_wxs_gdc_realn.bam 31695767059 BAM hg38 895e5823-7469-4c9c-b6ef-a0dd36248635 MGI C3L-03968.RNA-Seq.genomic.T.hg38 C3L-03968 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/597b0ad2-07a5-416a-8297-f6f3b0fb36e8/b9da1e14-7929-46ba-8e1d-c25682ba7df5.rna_seq.genomic.gdc_realn.bam 10164850599 BAM hg38 597b0ad2-07a5-416a-8297-f6f3b0fb36e8 MGI @@ -1627,8 +1715,10 @@ C3L-03984.WXS.T.hg38 C3L-03984 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3L-03985.WXS.A.hg38 C3L-03985 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8d13bc57-6d8f-4a6e-adb7-1e49d5a9b4ac/91d0e4bf-020f-418a-b0f2-ff88830ec283_wxs_gdc_realn.bam 33996992054 BAM hg38 8d13bc57-6d8f-4a6e-adb7-1e49d5a9b4ac MGI C3L-03985.WXS.N.hg38 C3L-03985 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ab390407-839f-4c7f-8521-22d845feb009/ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wxs_gdc_realn.bam 38440328540 BAM hg38 ab390407-839f-4c7f-8521-22d845feb009 MGI C3L-03985.WXS.T.hg38 C3L-03985 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/173ce51f-064d-4d0a-9c3b-845c8baa3b4a/25c995d7-c22e-4ac7-8e76-bc68a944f046_wxs_gdc_realn.bam 41005732418 BAM hg38 173ce51f-064d-4d0a-9c3b-845c8baa3b4a MGI +C3L-04013.WGS.N.hg38 C3L-04013 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//11e71a75-c179-414d-a78f-03aa26e8ef3b/0e3452f6-3bfd-46b5-b974-1b142a82845e_wgs_gdc_realn.bam 92470461052 BAM hg38 11e71a75-c179-414d-a78f-03aa26e8ef3b MGI C3L-04013.WXS.N.hg38 C3L-04013 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/79babf82-0500-4b82-b76d-81919961bc8f/0e3452f6-3bfd-46b5-b974-1b142a82845e_wxs_gdc_realn.bam 27940925237 BAM hg38 79babf82-0500-4b82-b76d-81919961bc8f MGI C3L-04013.WXS.T.hg38 C3L-04013 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a0403770-4fad-409c-8955-81b27b2ddef2/7f8bd24f-62f5-4fbc-8633-378805089c7c_wxs_gdc_realn.bam 30497169515 BAM hg38 a0403770-4fad-409c-8955-81b27b2ddef2 MGI +C3L-04014.WGS.N.hg38 C3L-04014 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//8cbda257-6835-4990-81de-e5ffa268a15f/9eb60886-10fc-4637-8745-d721a4f514e5_wgs_gdc_realn.bam 82820611592 BAM hg38 8cbda257-6835-4990-81de-e5ffa268a15f MGI C3L-04014.WXS.N.hg38 C3L-04014 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bcd0fdb2-0ee7-4cc8-88e1-483f364e627d/9eb60886-10fc-4637-8745-d721a4f514e5_wxs_gdc_realn.bam 56017714498 BAM hg38 bcd0fdb2-0ee7-4cc8-88e1-483f364e627d MGI C3L-04014.WXS.T.hg38 C3L-04014 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/71867537-620c-487a-b91b-0d0bcbd8c44c/295863ad-93e1-4be4-b13e-0bbd4ca64aff_wxs_gdc_realn.bam 38121801668 BAM hg38 71867537-620c-487a-b91b-0d0bcbd8c44c MGI C3L-04025.WXS.N.hg38 C3L-04025 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/34b61581-e961-468f-98de-0303f9b1735c/380bd699-e9e1-4b6e-ae17-2ab7d0daca42_wxs_gdc_realn.bam 37101731716 BAM hg38 34b61581-e961-468f-98de-0303f9b1735c MGI @@ -1653,6 +1743,7 @@ C3L-04038.WXS.N C3L-04038 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3L-04038.WXS.T C3L-04038 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/249c70cd-cfd6-49b5-9c77-33b54ab3004e/CPT0256720007.WholeExome.RP-1303.bam 20717451239 BAM hg19 249c70cd-cfd6-49b5-9c77-33b54ab3004e MGI C3L-04040.WXS.N.hg38 C3L-04040 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c3663e14-867c-437c-8f19-6006b7f20f17/3125ce10-eeb2-4a71-9101-3576d527d1a7_wxs_gdc_realn.bam 39530707118 BAM hg38 c3663e14-867c-437c-8f19-6006b7f20f17 MGI C3L-04040.WXS.T.hg38 C3L-04040 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/edaaa44b-59b2-41d0-b63b-437908fb076e/f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wxs_gdc_realn.bam 37737582526 BAM hg38 edaaa44b-59b2-41d0-b63b-437908fb076e MGI +C3L-04071.WGS.N.hg38 C3L-04071 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6072dfd0-63ad-46d4-a039-35a0f851216b/3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wgs_gdc_realn.bam 94307388841 BAM hg38 6072dfd0-63ad-46d4-a039-35a0f851216b MGI C3L-04071.WXS.N.hg38 C3L-04071 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e401f9d3-e7dd-4353-be52-a003345619c2/3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wxs_gdc_realn.bam 34178384162 BAM hg38 e401f9d3-e7dd-4353-be52-a003345619c2 MGI C3L-04071.WXS.T.hg38 C3L-04071 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/05e9cf45-ac6d-4e99-810f-2bc21c8fb703/80cdb7b5-f5b1-4343-a227-34c9e836f2ad_wxs_gdc_realn.bam 33211413787 BAM hg38 05e9cf45-ac6d-4e99-810f-2bc21c8fb703 MGI C3L-04072.Targeted.T C3L-04072 PDA Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/acea7c01-62b7-465e-9de4-5d81429affad/CPT0221240007.CustomSelection.RP-1303.PDO-18786.bam 5683060183 BAM hg19 acea7c01-62b7-465e-9de4-5d81429affad MGI @@ -1690,6 +1781,7 @@ C3L-04362.WXS.T C3L-04362 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import C3L-04365.WXS.A.hg38 C3L-04365 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/87e1a5ee-aa97-4fdf-a66a-d8269ac0b01c/1f5d7c92-cf45-4e13-ae33-5d2f30456320_wxs_gdc_realn.bam 28301321282 BAM hg38 87e1a5ee-aa97-4fdf-a66a-d8269ac0b01c MGI C3L-04365.WXS.N.hg38 C3L-04365 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/be1595fb-3fd7-44a8-9815-95f1278bd10f/a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wxs_gdc_realn.bam 38230343323 BAM hg38 be1595fb-3fd7-44a8-9815-95f1278bd10f MGI C3L-04365.WXS.T.hg38 C3L-04365 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/be58f912-7f40-4fec-ab26-cc968a0ee1aa/f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wxs_gdc_realn.bam 39393500859 BAM hg38 be58f912-7f40-4fec-ab26-cc968a0ee1aa MGI +C3L-04391.WGS.N.hg38 C3L-04391 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d22a2984-330a-4fda-b33b-85c32cd191ea/7d68aadc-cfad-474d-8cbd-98866b356245_wgs_gdc_realn.bam 81091303675 BAM hg38 d22a2984-330a-4fda-b33b-85c32cd191ea MGI C3L-04391.WXS.N.hg38 C3L-04391 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fa19091c-05eb-40a3-8a34-08b810ae7475/7d68aadc-cfad-474d-8cbd-98866b356245_wxs_gdc_realn.bam 35963405537 BAM hg38 fa19091c-05eb-40a3-8a34-08b810ae7475 MGI C3L-04391.WXS.T.hg38 C3L-04391 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1bc99f74-4329-4248-ba2d-38dac011326a/a52caf88-af54-482a-adcc-5c303877aa1b_wxs_gdc_realn.bam 34429160845 BAM hg38 1bc99f74-4329-4248-ba2d-38dac011326a MGI C3L-04392.WXS.N C3L-04392 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/097aa948-f10b-46c4-b757-6cdb889edd9a/CPT0392370002.WholeExome.RP-1303.bam 29321820408 BAM hg19 097aa948-f10b-46c4-b757-6cdb889edd9a MGI @@ -1783,6 +1875,7 @@ C3N-00154.WXS.N.hg38 C3N-00154 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3 C3N-00154.WXS.T.hg38 C3N-00154 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b17fadf8-5555-45d9-a935-b6a8b16cb1d1/884524a7-f4ac-4090-a91f-5cb369657472_gdc_realn.bam 40881738157 BAM hg38 b17fadf8-5555-45d9-a935-b6a8b16cb1d1 MGI C3N-00155.WXS.N.hg38 C3N-00155 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ab9967a6-16fa-4b94-8301-ebc2da4ccf26/5adced66-9cb2-4fb3-a62d-73088f173b03_wxs_gdc_realn.bam 31762958399 BAM hg38 ab9967a6-16fa-4b94-8301-ebc2da4ccf26 MGI C3N-00155.WXS.T.hg38 C3N-00155 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dc755142-6651-4df0-85a1-4c970f3c23c7/62db6c0b-5281-4d54-ae61-e2837422c183_wxs_gdc_realn.bam 35392980917 BAM hg38 dc755142-6651-4df0-85a1-4c970f3c23c7 MGI +C3N-00167.WGS.N.hg38 C3N-00167 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d20b4f56-0016-4bb7-91b6-addf61cc8e03/ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 81412547620 BAM hg38 d20b4f56-0016-4bb7-91b6-addf61cc8e03 MGI C3N-00167.WXS.A.hg38 C3N-00167 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d7958c2b-a368-45a2-ba4d-55bd2bb4fe46/466c48cf-e63a-4a3e-9733-bdd2ebbe1f41_wxs_gdc_realn.bam 51939983669 BAM hg38 d7958c2b-a368-45a2-ba4d-55bd2bb4fe46 MGI C3N-00167.WXS.N.hg38 C3N-00167 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c787fccf-de43-4170-93af-fa09eccdbe10/ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 35790226008 BAM hg38 c787fccf-de43-4170-93af-fa09eccdbe10 MGI C3N-00167.WXS.T.hg38 C3N-00167 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/96d46109-6c4b-4e88-bcbe-91be63779414/f674b5fd-beb5-48ec-834e-b6ebdb8e9056_gdc_realn.bam 32000296946 BAM hg38 96d46109-6c4b-4e88-bcbe-91be63779414 MGI @@ -1795,11 +1888,13 @@ C3N-00168.WXS.T.HET_r2VOW4.hg38 C3N-00168 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3N-00168.WXS.T.HET_r2VP3K C3N-00168 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/dd64aff9-f432-4253-9eef-4be83975bc7e/CPT0020010009.WholeExome.RP-1303.bam 18836693322 BAM hg19 dd64aff9-f432-4253-9eef-4be83975bc7e MGI C3N-00168.WXS.T.HET_r2VP3K.hg38 C3N-00168 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c64ae63f-4098-44e5-9bd5-e1fdf6dc7355/407da25d-b191-444d-b084-8597d7f27e8e_wxs_gdc_realn.bam 25390587127 BAM hg38 c64ae63f-4098-44e5-9bd5-e1fdf6dc7355 MGI C3N-00168.WXS.T.hg38 C3N-00168 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8c93a797-778d-4b3f-a018-006a6e45d827/b3eac668-b97c-4ca0-a475-4f3415c8eb65_gdc_realn.bam 35776200041 BAM hg38 8c93a797-778d-4b3f-a018-006a6e45d827 MGI +C3N-00169.WGS.N.hg38 C3N-00169 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//512f7752-fe90-4858-b937-6bb4b76ef75c/5b628c05-f250-42e1-a4fb-51bc68e3290e_gdc_realn.bam 90910737971 BAM hg38 512f7752-fe90-4858-b937-6bb4b76ef75c MGI C3N-00169.WXS.A.hg38 C3N-00169 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6e3a08f0-018d-4787-8f96-62994f7b8503/d4c71407-3c20-4063-ba8d-686f508d5bb2_wxs_gdc_realn.bam 49526686538 BAM hg38 6e3a08f0-018d-4787-8f96-62994f7b8503 MGI C3N-00169.WXS.N.hg38 C3N-00169 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9747802e-c40f-45cc-b79f-d5308141b839/5b628c05-f250-42e1-a4fb-51bc68e3290e_gdc_realn.bam 40775738887 BAM hg38 9747802e-c40f-45cc-b79f-d5308141b839 MGI C3N-00169.WXS.T.hg38 C3N-00169 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dc29c7ad-da85-4dbe-84ba-c5fdaa80597e/c46cbf07-918a-4264-bc21-21c0b95befd2_gdc_realn.bam 34198378303 BAM hg38 dc29c7ad-da85-4dbe-84ba-c5fdaa80597e MGI C3N-00171.WXS.N.hg38 C3N-00171 SAR WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1ce78252-274a-4829-a063-024ddb7bd220/daf35038-d6a8-47af-9b7e-86430aaa0f5e_gdc_realn.bam 42011794282 BAM hg38 1ce78252-274a-4829-a063-024ddb7bd220 MGI C3N-00171.WXS.T.hg38 C3N-00171 SAR WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3a8be450-7717-4a66-a72f-ed6135ec2faf/52cbf23d-a707-461d-913a-a2dd6bec44cc_gdc_realn.bam 83101575467 BAM hg38 3a8be450-7717-4a66-a72f-ed6135ec2faf MGI +C3N-00175.WGS.N.hg38 C3N-00175 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b6d1587d-6b28-404a-b179-969c4d7c20cc/6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 88977583390 BAM hg38 b6d1587d-6b28-404a-b179-969c4d7c20cc MGI C3N-00175.WXS.A.hg38 C3N-00175 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0608421f-4270-4955-8107-5ddee052c00e/1c2f8561-ee00-4a24-ab6b-1a8dbb217c22_wxs_gdc_realn.bam 39865354609 BAM hg38 0608421f-4270-4955-8107-5ddee052c00e MGI C3N-00175.WXS.N.hg38 C3N-00175 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/24538492-8d08-4e27-a491-5777be4e7ef7/6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 38865744717 BAM hg38 24538492-8d08-4e27-a491-5777be4e7ef7 MGI C3N-00175.WXS.T.hg38 C3N-00175 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/95010f7e-be2f-43c0-b865-99fe950b2aac/0750c130-b7f0-4f82-9579-188f3e1705e0_gdc_realn.bam 33129120813 BAM hg38 95010f7e-be2f-43c0-b865-99fe950b2aac MGI @@ -1813,6 +1908,7 @@ C3N-00177.WXS.T.hg38 C3N-00177 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3N-00179.WXS.N.hg38 C3N-00179 CM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/86acbda4-0946-4587-8374-f9a714ccf8a4/12e57dd9-27e5-49a6-b3bd-8f5403d5fd8a_gdc_realn.bam 35901015195 BAM hg38 86acbda4-0946-4587-8374-f9a714ccf8a4 MGI C3N-00179.WXS.T.hg38 C3N-00179 CM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/13ce8bbb-86e4-493d-aaba-552ad9f36ad1/0184cb05-f9da-4925-9dc0-0f3d4277cfbb_gdc_realn.bam 40182162952 BAM hg38 13ce8bbb-86e4-493d-aaba-552ad9f36ad1 MGI C3N-00180.Targeted.T C3N-00180 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2cc82403-f9b0-4bc2-a498-a3d9e3234b99/CPT0066780006.CustomSelection.RP-1303.PDO-18786.bam 5054326496 BAM hg19 2cc82403-f9b0-4bc2-a498-a3d9e3234b99 MGI +C3N-00180.WGS.N.hg38 C3N-00180 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//52de0627-016c-459d-8a66-3ed9755f9c51/17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 168072072373 BAM hg38 52de0627-016c-459d-8a66-3ed9755f9c51 MGI C3N-00180.WXS.A.hg38 C3N-00180 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7c36c6db-ab60-4e7b-abcd-04edd8b9d73d/73b5d550-f522-4d2a-b31d-6316b22c2e29_wxs_gdc_realn.bam 44639736620 BAM hg38 7c36c6db-ab60-4e7b-abcd-04edd8b9d73d MGI C3N-00180.WXS.N.hg38 C3N-00180 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4c397512-4468-40e1-aca6-d26ab9da1aa3/17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 51703140057 BAM hg38 4c397512-4468-40e1-aca6-d26ab9da1aa3 MGI C3N-00180.WXS.T.hg38 C3N-00180 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/163dbc0f-5a12-40e7-8b62-880e21db7cdb/1f25a90e-1fea-4361-b8d3-4b14350454dd_gdc_realn.bam 40356955153 BAM hg38 163dbc0f-5a12-40e7-8b62-880e21db7cdb MGI @@ -1830,23 +1926,29 @@ C3N-00198.WXS.T.DEEP_oQ5wQY C3N-00198 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-d C3N-00198.WXS.T.DEEP_oQ5wQY.hg38 C3N-00198 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/8a180028-4d0e-4ace-8fdf-46d354cd1148/83e23890-6d72-46bb-bfb2-2b37bca0908a_gdc_realn.bam 41268545847 BAM hg38 8a180028-4d0e-4ace-8fdf-46d354cd1148 MGI C3N-00198.WXS.T.hg38.high_cov C3N-00198 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/623063b2-3df5-40e3-a25f-8acd1bc25d5e/ceb2062d-2258-49a6-91b3-723567d508b6_wxs_gdc_realn.bam 70339229416 BAM hg38 623063b2-3df5-40e3-a25f-8acd1bc25d5e MGI C3N-00198.WXS.T.high_cov C3N-00198 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/be68f052-e665-4ef7-8dc8-f32d6491fa9a/CPT0014040006_1.WholeExome.RP-1303.bam 51297996778 BAM hg19 be68f052-e665-4ef7-8dc8-f32d6491fa9a MGI +C3N-00199.WGS.N.hg38 C3N-00199 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4e6b7526-bb78-4db7-998e-1d9665df32b7/42bb41e3-aee2-4728-8bb6-2b80fd76c3fd_gdc_realn.bam 114208957587 BAM hg38 4e6b7526-bb78-4db7-998e-1d9665df32b7 MGI C3N-00199.WXS.A.hg38 C3N-00199 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/52a220bd-1caa-44d7-8d67-107eddcb8122/42718e3a-c8ab-4f1c-9bdc-2fc86783ba47_wxs_gdc_realn.bam 48899594876 BAM hg38 52a220bd-1caa-44d7-8d67-107eddcb8122 MGI C3N-00199.WXS.N.hg38 C3N-00199 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c646d21a-7317-46e8-afb0-46e08229ab0c/42bb41e3-aee2-4728-8bb6-2b80fd76c3fd_gdc_realn.bam 46780269090 BAM hg38 c646d21a-7317-46e8-afb0-46e08229ab0c MGI C3N-00199.WXS.T.hg38 C3N-00199 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/39c04fe6-5a29-46eb-9a1c-f1f5bb9b0cd8/a807633b-a292-40f9-870b-b6b9bffeac1f_gdc_realn.bam 33675105402 BAM hg38 39c04fe6-5a29-46eb-9a1c-f1f5bb9b0cd8 MGI C3N-00200.WXS.N.hg38 C3N-00200 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1d2a42cf-e43c-4ded-8a10-c1c0cc85791a/136eb1b9-e1da-4a4d-9637-708e3553ba64_gdc_realn.bam 66282520018 BAM hg38 1d2a42cf-e43c-4ded-8a10-c1c0cc85791a MGI C3N-00200.WXS.T.hg38 C3N-00200 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/78de42e6-acc0-49ab-8879-7af689f912b0/7c591788-4359-4ae7-8dc2-6342e4726baa_gdc_realn.bam 35892562926 BAM hg38 78de42e6-acc0-49ab-8879-7af689f912b0 MGI +C3N-00203.WGS.N.hg38 C3N-00203 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//28205519-c62c-4216-a6a9-c0be3ebf08d6/44dee853-c2c4-431f-95d1-cbf3732c0dcd_wgs_gdc_realn.bam 107048598050 BAM hg38 28205519-c62c-4216-a6a9-c0be3ebf08d6 MGI C3N-00203.WXS.A.hg38 C3N-00203 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fc410ff5-c375-4af3-8069-162cbf2fee40/6abce0dc-8025-44d7-b9d3-de1485bdff1a_wxs_gdc_realn.bam 38190691759 BAM hg38 fc410ff5-c375-4af3-8069-162cbf2fee40 MGI C3N-00203.WXS.N.hg38 C3N-00203 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2fe6e909-0589-4171-8a94-d56ba8d405fd/44dee853-c2c4-431f-95d1-cbf3732c0dcd_wxs_gdc_realn.bam 40027821219 BAM hg38 2fe6e909-0589-4171-8a94-d56ba8d405fd MGI C3N-00203.WXS.T.hg38 C3N-00203 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fbd9d3c3-115a-4637-b326-a6e3e7c8dc51/506d087f-a4aa-433d-9ecf-a1d908ab50f8_wxs_gdc_realn.bam 50716539875 BAM hg38 fbd9d3c3-115a-4637-b326-a6e3e7c8dc51 MGI C3N-00204.WXS.N.hg38 C3N-00204 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ea384a65-ca41-4c64-b65a-16f62bbd9604/c93de7f1-762b-4ca7-a1e4-8f959c170856_wxs_gdc_realn.bam 34063720268 BAM hg38 ea384a65-ca41-4c64-b65a-16f62bbd9604 MGI C3N-00204.WXS.T.hg38 C3N-00204 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e5b8a4d8-f631-4852-afd2-8aa05e1a2267/5eab67d6-ad15-43ea-b7d4-265945e3ba09_wxs_gdc_realn.bam 69573604165 BAM hg38 e5b8a4d8-f631-4852-afd2-8aa05e1a2267 MGI +C3N-00211.WGS.N.hg38 C3N-00211 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//0ebfa20c-097f-47c4-afb3-9688c6c5b074/bbab7603-c304-4c44-a735-91e677083ee9_wgs_gdc_realn.bam 98091811789 BAM hg38 0ebfa20c-097f-47c4-afb3-9688c6c5b074 MGI C3N-00211.WXS.N.hg38 C3N-00211 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7f5f833c-d120-4318-97b6-8988f74e29e3/bbab7603-c304-4c44-a735-91e677083ee9_wxs_gdc_realn.bam 53607358989 BAM hg38 7f5f833c-d120-4318-97b6-8988f74e29e3 MGI C3N-00211.WXS.T.hg38 C3N-00211 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/5475774a-cfde-4aa3-8cd1-85fda9e6260f/7ac573c7-ed1b-4085-a310-805e1aff4b20_wxs_gdc_realn.bam 51587274152 BAM hg38 5475774a-cfde-4aa3-8cd1-85fda9e6260f MGI +C3N-00217.WGS.N.hg38 C3N-00217 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7c0fa13b-ae71-42df-800a-a9480cc67133/df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wgs_gdc_realn.bam 82819130250 BAM hg38 7c0fa13b-ae71-42df-800a-a9480cc67133 MGI C3N-00217.WXS.A.hg38 C3N-00217 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bb1871eb-69df-4c1e-a654-bd2212f6a763/e21dba0d-f7c8-43ca-abe2-d532ac286c53_wxs_gdc_realn.bam 48560284391 BAM hg38 bb1871eb-69df-4c1e-a654-bd2212f6a763 MGI C3N-00217.WXS.N.hg38 C3N-00217 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e088330e-c0af-4151-83e6-9dff9555d3eb/df67cd41-eab5-4d3c-9224-393ac1f0f0f2_wxs_gdc_realn.bam 34804905466 BAM hg38 e088330e-c0af-4151-83e6-9dff9555d3eb MGI C3N-00217.WXS.T.hg38 C3N-00217 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7139938c-1a84-43b5-9956-05b7f2894847/e6268f9c-fd73-4163-8824-eca1dab52d32_wxs_gdc_realn.bam 38671141761 BAM hg38 7139938c-1a84-43b5-9956-05b7f2894847 MGI +C3N-00221.WGS.N.hg38 C3N-00221 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//20eadfd0-2177-4684-bd76-6191a4387ec9/5c67075a-e5ac-4324-80fd-d1d15e0331da_wgs_gdc_realn.bam 89632830119 BAM hg38 20eadfd0-2177-4684-bd76-6191a4387ec9 MGI C3N-00221.WXS.N.hg38 C3N-00221 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7e51f93b-4b7d-4ca4-8219-ed573476b6b8/5c67075a-e5ac-4324-80fd-d1d15e0331da_wxs_gdc_realn.bam 40929034020 BAM hg38 7e51f93b-4b7d-4ca4-8219-ed573476b6b8 MGI C3N-00221.WXS.T.hg38 C3N-00221 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6e7524a2-1023-4343-846d-82da4b2c3e1a/474f12bc-db60-42d9-b11b-400bf4338ada_wxs_gdc_realn.bam 31875258454 BAM hg38 6e7524a2-1023-4343-846d-82da4b2c3e1a MGI +C3N-00223.WGS.N.hg38 C3N-00223 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//eab0894a-13ab-4a8f-8de5-1a503dd3a441/1bd914de-77b5-40a2-92cd-d59097de853f_wgs_gdc_realn.bam 97741387306 BAM hg38 eab0894a-13ab-4a8f-8de5-1a503dd3a441 MGI C3N-00223.WXS.A.hg38 C3N-00223 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/55baae83-957d-424e-b77e-6f90d92e15b6/82c5882b-db28-4fef-a849-52a1e67e9422_wxs_gdc_realn.bam 49263203762 BAM hg38 55baae83-957d-424e-b77e-6f90d92e15b6 MGI C3N-00223.WXS.N.hg38 C3N-00223 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b571dd7d-8429-4e67-bbdc-e2f6af4e92ac/1bd914de-77b5-40a2-92cd-d59097de853f_wxs_gdc_realn.bam 37699758451 BAM hg38 b571dd7d-8429-4e67-bbdc-e2f6af4e92ac MGI C3N-00223.WXS.T.hg38 C3N-00223 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f441e9d6-5c2d-4be0-b158-a4cac18a0156/c21b39c5-2ee8-4071-832e-febc767e64aa_wxs_gdc_realn.bam 37777693232 BAM hg38 f441e9d6-5c2d-4be0-b158-a4cac18a0156 MGI @@ -1858,6 +1960,7 @@ C3N-00244.WXS.N.hg38 C3N-00244 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3N-00244.WXS.T.hg38 C3N-00244 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/734e4595-5abd-4739-8fbe-0b877b1b62c3/0e504ad9-bd5a-4c37-8996-66032855966d_gdc_realn.bam 36427791748 BAM hg38 734e4595-5abd-4739-8fbe-0b877b1b62c3 MGI C3N-00246.WXS.N.hg38 C3N-00246 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/717121ec-6899-4fde-a634-1a6727a9c246/ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 32179635876 BAM hg38 717121ec-6899-4fde-a634-1a6727a9c246 MGI C3N-00246.WXS.T.hg38 C3N-00246 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/0cca9017-b591-4699-b5a9-91ddc6ed5127/0c549f20-30eb-4517-b94a-116c0f1e6755_gdc_realn.bam 44838721504 BAM hg38 0cca9017-b591-4699-b5a9-91ddc6ed5127 MGI +C3N-00247.WGS.N.hg38 C3N-00247 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//53d1890c-8b29-487f-a73a-5bf0c6ef901d/864d0707-63aa-439f-8fcc-cbe77d2235bb_wgs_gdc_realn.bam 89697207318 BAM hg38 53d1890c-8b29-487f-a73a-5bf0c6ef901d MGI C3N-00247.WXS.N.hg38 C3N-00247 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c13e3765-ba34-45be-ad45-8761f8668d93/864d0707-63aa-439f-8fcc-cbe77d2235bb_wxs_gdc_realn.bam 43988430123 BAM hg38 c13e3765-ba34-45be-ad45-8761f8668d93 MGI C3N-00247.WXS.T.hg38 C3N-00247 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/65e5941b-b9fc-4c60-bb22-61730bf216fa/d8775fea-842f-49cd-a59c-e95128566a32_wxs_gdc_realn.bam 46450438706 BAM hg38 65e5941b-b9fc-4c60-bb22-61730bf216fa MGI C3N-00249.Targeted.T C3N-00249 PDA Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a57a8577-1997-4e79-91b1-50836db5dd22/CPT0025750009_1.CustomSelection.RP-1303.PDO-18786.bam 4427050184 BAM hg19 a57a8577-1997-4e79-91b1-50836db5dd22 MGI @@ -1868,10 +1971,12 @@ C3N-00249.WXS.T.DEEP_rmjXr6 C3N-00249 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-d C3N-00249.WXS.T.DEEP_rmjXr6.hg38 C3N-00249 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/130c5bb4-e44a-497f-89eb-a95af0ccbc71/4fc51e70-9dc7-4a0f-af5b-f45bbbaa9292_gdc_realn.bam 33380327861 BAM hg38 130c5bb4-e44a-497f-89eb-a95af0ccbc71 MGI C3N-00249.WXS.T.hg38.high_cov C3N-00249 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d7865025-7006-4123-a5bd-7d717fa971e1/d54a354f-a303-4689-9f1b-fba719fd79ef_wxs_gdc_realn.bam 66309173337 BAM hg38 d7865025-7006-4123-a5bd-7d717fa971e1 MGI C3N-00249.WXS.T.high_cov C3N-00249 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a8fa94a4-714f-41d2-9166-bc9a8b953af3/CPT0025750009_1.WholeExome.RP-1303.bam 48565101006 BAM hg19 a8fa94a4-714f-41d2-9166-bc9a8b953af3 MGI +C3N-00293.WGS.N.hg38 C3N-00293 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d01ef2ab-cfa8-480b-b6a7-75e0af8d0f70/4df34544-f9af-46ce-a1f0-926910b6686f_gdc_realn.bam 115527126689 BAM hg38 d01ef2ab-cfa8-480b-b6a7-75e0af8d0f70 MGI C3N-00293.WXS.A.hg38 C3N-00293 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/09a6fdf9-0316-4ead-a271-a49b8515f4eb/6904ca6f-304b-45ec-8b94-4a84d5abba18_wxs_gdc_realn.bam 36456297290 BAM hg38 09a6fdf9-0316-4ead-a271-a49b8515f4eb MGI C3N-00293.WXS.N.hg38 C3N-00293 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/243ff6d2-3847-4958-ab9c-0967e667f466/4df34544-f9af-46ce-a1f0-926910b6686f_gdc_realn.bam 36851096449 BAM hg38 243ff6d2-3847-4958-ab9c-0967e667f466 MGI C3N-00293.WXS.T.hg38 C3N-00293 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/5433b105-3675-4d46-a617-2fa40c72a65f/530076e9-9ce2-4216-9576-d4821852841a_gdc_realn.bam 62789380638 BAM hg38 5433b105-3675-4d46-a617-2fa40c72a65f MGI C3N-00294.Targeted.T C3N-00294 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7f4b8e6e-1a71-413e-8d38-eff24dfdaa0d/CPT0008450006.CustomSelection.RP-1303.PDO-18786.bam 4674990457 BAM hg19 7f4b8e6e-1a71-413e-8d38-eff24dfdaa0d MGI +C3N-00294.WGS.N.hg38 C3N-00294 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//74f2bb03-dff8-4b6f-a724-a7661b1c6b9a/1d890481-f944-4643-a8b7-643489006a49_gdc_realn.bam 104808950878 BAM hg38 74f2bb03-dff8-4b6f-a724-a7661b1c6b9a MGI C3N-00294.WXS.N.hg38 C3N-00294 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/07e2e2bb-355a-42b1-9f31-f05a6384c16b/1d890481-f944-4643-a8b7-643489006a49_gdc_realn.bam 41288094231 BAM hg38 07e2e2bb-355a-42b1-9f31-f05a6384c16b MGI C3N-00294.WXS.T.hg38 C3N-00294 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dd47d085-78a0-4450-96a2-e1bfeabe12dd/93912139-ca7d-426f-9b58-00db34bac3c8_gdc_realn.bam 39192168418 BAM hg38 dd47d085-78a0-4450-96a2-e1bfeabe12dd MGI C3N-00295.WXS.N.hg38 C3N-00295 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6ccddafd-f040-4cb9-a789-c2711c89efc2/3a76fc90-18b6-4046-9e9b-feac9408b617_gdc_realn.bam 32400118627 BAM hg38 6ccddafd-f040-4cb9-a789-c2711c89efc2 MGI @@ -1998,6 +2103,7 @@ C3N-00390.WXS.T.HET_xnEmQz.hg38 C3N-00390 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3N-00390.WXS.T.hg38 C3N-00390 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8fb76fd8-4ac2-445a-bf61-627855d3a69c/123b51a7-1551-4ff7-99d0-6feb628c4355_gdc_realn.bam 33875116875 BAM hg38 8fb76fd8-4ac2-445a-bf61-627855d3a69c MGI C3N-00432.WXS.N.hg38 C3N-00432 CM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4aa31eae-f3ad-45a4-b7c7-ab05dfd196ee/735cc0c8-63e1-44cb-b67c-581b7d150098_gdc_realn.bam 33042713605 BAM hg38 4aa31eae-f3ad-45a4-b7c7-ab05dfd196ee MGI C3N-00432.WXS.T.hg38 C3N-00432 CM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/420db2ee-1289-4967-983e-afa01d3805d3/af990bd9-32e6-4027-acbf-22f7b55c7d7d_gdc_realn.bam 38812438143 BAM hg38 420db2ee-1289-4967-983e-afa01d3805d3 MGI +C3N-00433.WGS.N.hg38 C3N-00433 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//072a38fa-c895-45c7-ac58-2135d0c9d426/d2550193-d082-44fe-a0ec-9ce59f8a06cb_gdc_realn.bam 105176943180 BAM hg38 072a38fa-c895-45c7-ac58-2135d0c9d426 MGI C3N-00433.WXS.A.hg38 C3N-00433 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b35bffde-a71d-4aa9-a10d-92b8eeced9c5/839fab3b-2caa-4b89-a38e-506d1ac791da_wxs_gdc_realn.bam 48610517822 BAM hg38 b35bffde-a71d-4aa9-a10d-92b8eeced9c5 MGI C3N-00433.WXS.N.hg38 C3N-00433 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/13281c32-408b-4ec9-8c38-9f251e0efa4c/d2550193-d082-44fe-a0ec-9ce59f8a06cb_gdc_realn.bam 35614744578 BAM hg38 13281c32-408b-4ec9-8c38-9f251e0efa4c MGI C3N-00433.WXS.T.hg38 C3N-00433 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/871aa1bb-9e81-4bc8-b766-233e958149ba/2b589dfa-a7ce-4957-ad42-ca2e3d3d9d69_gdc_realn.bam 56371621618 BAM hg38 871aa1bb-9e81-4bc8-b766-233e958149ba MGI @@ -2033,6 +2139,7 @@ C3N-00494.WXS.T.hg38 C3N-00494 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3N-00495.WXS.A.hg38 C3N-00495 CCRCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/06fb9995-ba0a-4fa4-9e00-dad1f86e56b0/18845e06-84c7-4e8c-b77f-eb2dd229f458_wxs_gdc_realn.bam 51335790611 BAM hg38 06fb9995-ba0a-4fa4-9e00-dad1f86e56b0 MGI C3N-00495.WXS.N.hg38 C3N-00495 CCRCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/496e0740-e279-480d-81ab-9d9644ca4a38/92a60f1e-d6d9-4eed-9b90-d50c151d0381_gdc_realn.bam 40355055601 BAM hg38 496e0740-e279-480d-81ab-9d9644ca4a38 MGI C3N-00495.WXS.T.hg38 C3N-00495 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e1f00fb6-a3d8-4fa0-89c5-51391420efef/77acae83-6dc6-4efe-8c93-1008974b60d9_gdc_realn.bam 50759379627 BAM hg38 e1f00fb6-a3d8-4fa0-89c5-51391420efef MGI +C3N-00497.WGS.N.hg38 C3N-00497 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//573a65d6-7991-4edf-a387-fda73368928e/ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 91139802227 BAM hg38 573a65d6-7991-4edf-a387-fda73368928e MGI C3N-00497.WXS.A.hg38 C3N-00497 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/281278bc-9daf-4d4b-874c-7bdbdb7febfb/baf7ec82-a326-4be6-a469-1a24548643f1_wxs_gdc_realn.bam 37254230398 BAM hg38 281278bc-9daf-4d4b-874c-7bdbdb7febfb MGI C3N-00497.WXS.N.hg38 C3N-00497 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/598a9eb0-2b5a-4f39-a887-06b08a40f2eb/ea81ec55-f07b-4547-955c-d30f38815c4f_gdc_realn.bam 40519337943 BAM hg38 598a9eb0-2b5a-4f39-a887-06b08a40f2eb MGI C3N-00497.WXS.T.hg38 C3N-00497 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/99921753-5bc6-4b6a-89dc-c7b006ac313a/a505c2ad-3df9-4e1d-a4c0-de78601088a6_gdc_realn.bam 39709733235 BAM hg38 99921753-5bc6-4b6a-89dc-c7b006ac313a MGI @@ -2065,40 +2172,52 @@ C3N-00519.WXS.T.hg38 C3N-00519 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3N-00520.WXS.A.hg38 C3N-00520 UCEC WXS tissue_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/4c4c05c7-f223-4f9d-9e05-2a6ed86b6772/8f5b07e2-f211-43f2-a1f0-668a7adfe884_wxs_gdc_realn.bam 23598314549 BAM hg38 4c4c05c7-f223-4f9d-9e05-2a6ed86b6772 MGI C3N-00520.WXS.N.hg38 C3N-00520 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2018ed32-76f5-4008-85f0-de8e0cbd6a81/cafab02f-1ebc-45de-90d8-abbea5891cb4_wxs_gdc_realn.bam 40629885612 BAM hg38 2018ed32-76f5-4008-85f0-de8e0cbd6a81 MGI C3N-00520.WXS.T.hg38 C3N-00520 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6174bc64-77fb-48be-bd26-51d910ff182e/77583640-4c16-464b-91a6-64ff04fa1421_wxs_gdc_realn.bam 35601090265 BAM hg38 6174bc64-77fb-48be-bd26-51d910ff182e MGI +C3N-00545.WGS.N.hg38 C3N-00545 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//95404d73-3b20-470a-b1ad-77c1f428b7fb/0ea25eb8-290a-4a16-a5db-b5b4c4be0e32_gdc_realn.bam 137891274230 BAM hg38 95404d73-3b20-470a-b1ad-77c1f428b7fb MGI C3N-00545.WXS.A.hg38 C3N-00545 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/11f89b3c-a6c0-4c0d-80e6-6d2d55064985/5603a402-13d4-4f67-a990-303a0402b1e4_wxs_gdc_realn.bam 48830181410 BAM hg38 11f89b3c-a6c0-4c0d-80e6-6d2d55064985 MGI C3N-00545.WXS.N.hg38 C3N-00545 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2ac6cf26-7fa7-460f-a31e-3646f7b0f241/0ea25eb8-290a-4a16-a5db-b5b4c4be0e32_gdc_realn.bam 32774662433 BAM hg38 2ac6cf26-7fa7-460f-a31e-3646f7b0f241 MGI C3N-00545.WXS.T.RDNA_omG0EN.hg38 C3N-00545 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0336e36c-8b35-4d98-a5d8-087891d1e750/db37ef3d-5f8d-47c4-9f46-2ecafb8ee37b_wxs_gdc_realn.bam 56785034773 BAM hg38 0336e36c-8b35-4d98-a5d8-087891d1e750 MGI +C3N-00546.WGS.N.hg38 C3N-00546 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//f5ab5a28-17d3-405c-b2ca-5945333bd155/2da0a12e-556f-4ed6-a626-831681da020e_gdc_realn.bam 111888101633 BAM hg38 f5ab5a28-17d3-405c-b2ca-5945333bd155 MGI C3N-00546.WXS.A.hg38 C3N-00546 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8142f8a1-1c5e-44d6-85bc-9fdc4d1a1bea/e896e137-ed7c-4689-9780-769d67853f73_wxs_gdc_realn.bam 56666508154 BAM hg38 8142f8a1-1c5e-44d6-85bc-9fdc4d1a1bea MGI C3N-00546.WXS.N.hg38 C3N-00546 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f25758fa-258a-4762-89a2-67e07e7ffde9/2da0a12e-556f-4ed6-a626-831681da020e_gdc_realn.bam 40670117870 BAM hg38 f25758fa-258a-4762-89a2-67e07e7ffde9 MGI C3N-00546.WXS.T.hg38 C3N-00546 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/82f8f2a4-2b3b-498d-8bcb-3879cbbcf8a8/1caecc54-634b-4108-90bd-d813bb5506dc_gdc_realn.bam 48207085485 BAM hg38 82f8f2a4-2b3b-498d-8bcb-3879cbbcf8a8 MGI +C3N-00547.WGS.N.hg38 C3N-00547 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//72cc93b3-91b8-4a4b-b55d-db09b5eaf6c9/111fcdc8-3ab8-4064-b0ad-a0617700251e_gdc_realn.bam 95421149912 BAM hg38 72cc93b3-91b8-4a4b-b55d-db09b5eaf6c9 MGI C3N-00547.WXS.A.hg38 C3N-00547 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d9d96aa6-20aa-43a7-9be0-375a053c1a05/fac83b92-f4e8-4824-8bc5-e05a857bda61_wxs_gdc_realn.bam 60391927344 BAM hg38 d9d96aa6-20aa-43a7-9be0-375a053c1a05 MGI C3N-00547.WXS.N.hg38 C3N-00547 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/54499215-2538-46bc-ba16-f1ef797b7684/111fcdc8-3ab8-4064-b0ad-a0617700251e_gdc_realn.bam 40603003589 BAM hg38 54499215-2538-46bc-ba16-f1ef797b7684 MGI C3N-00547.WXS.T.hg38 C3N-00547 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/93a36f05-aeff-4229-b681-345a78603fdd/53288c31-b060-4d2d-b5c3-62cb54a0d74e_gdc_realn.bam 38397448142 BAM hg38 93a36f05-aeff-4229-b681-345a78603fdd MGI +C3N-00549.WGS.N.hg38 C3N-00549 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//75a2d28d-ff7a-4ab2-a2dd-ee502d96ff98/9400b41a-1c41-4139-83b1-dc9c59f3535c_gdc_realn.bam 113287330947 BAM hg38 75a2d28d-ff7a-4ab2-a2dd-ee502d96ff98 MGI C3N-00549.WXS.A.hg38 C3N-00549 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a7a3e9f0-cc11-4602-9368-1c372e0c4949/2210dd00-301f-4e3d-884a-8c31f719c3e7_wxs_gdc_realn.bam 48159967312 BAM hg38 a7a3e9f0-cc11-4602-9368-1c372e0c4949 MGI C3N-00549.WXS.N.hg38 C3N-00549 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1ea2b3f3-deaa-4144-9eaa-9fb9652618b0/9400b41a-1c41-4139-83b1-dc9c59f3535c_gdc_realn.bam 33825533866 BAM hg38 1ea2b3f3-deaa-4144-9eaa-9fb9652618b0 MGI C3N-00549.WXS.T.hg38 C3N-00549 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e3841eed-9dc6-4ff5-bf0c-744d595cf381/b269581f-4996-46b7-8cd4-67a687921374_gdc_realn.bam 36339108083 BAM hg38 e3841eed-9dc6-4ff5-bf0c-744d595cf381 MGI +C3N-00550.WGS.N.hg38 C3N-00550 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a17e365c-bf3d-4f64-bda6-6cf02df8ea02/e1adcb02-b22a-4ee5-bf75-701907f3d2a0_gdc_realn.bam 107822909713 BAM hg38 a17e365c-bf3d-4f64-bda6-6cf02df8ea02 MGI C3N-00550.WXS.A.hg38 C3N-00550 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3008d2b6-33f2-4188-98f7-b798e84c095d/4e99325b-224f-4d44-9791-61fd8e4b735c_wxs_gdc_realn.bam 64542711435 BAM hg38 3008d2b6-33f2-4188-98f7-b798e84c095d MGI C3N-00550.WXS.N.hg38 C3N-00550 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/24a56d2c-52df-4b4e-890f-37bfeab84486/e1adcb02-b22a-4ee5-bf75-701907f3d2a0_gdc_realn.bam 39044458850 BAM hg38 24a56d2c-52df-4b4e-890f-37bfeab84486 MGI C3N-00550.WXS.T.hg38 C3N-00550 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8754ff08-daab-4b4c-b783-8bfb9a5a47a7/ab486740-7504-4009-8fa1-5b36b5ae988e_gdc_realn.bam 37776781482 BAM hg38 8754ff08-daab-4b4c-b783-8bfb9a5a47a7 MGI +C3N-00551.WGS.N.hg38 C3N-00551 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//f6d5c5d5-6e86-4028-83ed-d12604d82861/a63bf187-8e4a-4b33-b44a-5cf57dab7c7b_gdc_realn.bam 122941400403 BAM hg38 f6d5c5d5-6e86-4028-83ed-d12604d82861 MGI C3N-00551.WXS.A.hg38 C3N-00551 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fb197d81-9ca6-4ced-a15b-333379e68a71/cff714c1-b7ce-4726-a1b0-0985edc347de_wxs_gdc_realn.bam 38752516893 BAM hg38 fb197d81-9ca6-4ced-a15b-333379e68a71 MGI C3N-00551.WXS.N.hg38 C3N-00551 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3ccc100e-9776-4d24-b055-5f60cf4f404f/a63bf187-8e4a-4b33-b44a-5cf57dab7c7b_gdc_realn.bam 39903652719 BAM hg38 3ccc100e-9776-4d24-b055-5f60cf4f404f MGI C3N-00551.WXS.T.hg38 C3N-00551 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6884df1c-37d4-48ad-bb75-851222cf0cf3/2e2afbe4-e8c0-452e-b150-6527fd1b52ad_gdc_realn.bam 35290874314 BAM hg38 6884df1c-37d4-48ad-bb75-851222cf0cf3 MGI +C3N-00552.WGS.N.hg38 C3N-00552 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//3f3922ca-65e6-425b-b9a6-6726467bd527/397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 128714272978 BAM hg38 3f3922ca-65e6-425b-b9a6-6726467bd527 MGI C3N-00552.WXS.A.hg38 C3N-00552 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1c886217-9753-40af-84d7-204cff0792cb/516de7b2-eddb-4b15-869a-4e1ef56abce4_wxs_gdc_realn.bam 61530696108 BAM hg38 1c886217-9753-40af-84d7-204cff0792cb MGI C3N-00552.WXS.N.hg38 C3N-00552 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/51f324bb-f989-4ff0-965d-4f052704d411/397dec2a-b730-4e76-9f22-cf04d07980c0_gdc_realn.bam 38053302981 BAM hg38 51f324bb-f989-4ff0-965d-4f052704d411 MGI C3N-00552.WXS.T.hg38 C3N-00552 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/26be535a-69cf-4890-819b-6665e10ef4e7/08423635-fe99-41bf-96a0-cdea06897bde_gdc_realn.bam 43612758187 BAM hg38 26be535a-69cf-4890-819b-6665e10ef4e7 MGI +C3N-00555.WGS.N.hg38 C3N-00555 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//df90a8f7-91fe-4249-a664-3fb9ceb71940/8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 112252028059 BAM hg38 df90a8f7-91fe-4249-a664-3fb9ceb71940 MGI C3N-00555.WXS.A.hg38 C3N-00555 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8a45c647-2669-43dd-ad83-1296b66648fd/7ad4d839-7612-4d70-97ac-e0ee7920826a_wxs_gdc_realn.bam 37265494530 BAM hg38 8a45c647-2669-43dd-ad83-1296b66648fd MGI C3N-00555.WXS.N.hg38 C3N-00555 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/dbde810d-19ef-4825-8f83-f93f62b822d6/8f74dadd-7534-41a3-8025-0f9fd4bd5743_gdc_realn.bam 38351489593 BAM hg38 dbde810d-19ef-4825-8f83-f93f62b822d6 MGI C3N-00555.WXS.T.hg38 C3N-00555 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f812e7c5-876c-4090-902d-2f2fede73a97/415e2d1f-8d86-4cd3-bdd2-45526a993d5d_gdc_realn.bam 47246801233 BAM hg38 f812e7c5-876c-4090-902d-2f2fede73a97 MGI +C3N-00556.WGS.N.hg38 C3N-00556 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b7a4651a-a059-4b4e-955f-f94e03509855/b0e167ba-7294-454e-bb50-8924f1495898_wgs_gdc_realn.bam 94439292998 BAM hg38 b7a4651a-a059-4b4e-955f-f94e03509855 MGI C3N-00556.WXS.A.hg38 C3N-00556 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a8ff62af-e125-4e22-8ae7-b048d02e814c/d9194d74-2daa-4404-80b7-79fbd4ec2ba1_wxs_gdc_realn.bam 51119609551 BAM hg38 a8ff62af-e125-4e22-8ae7-b048d02e814c MGI C3N-00556.WXS.N.hg38 C3N-00556 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5018bc92-4cf5-417b-bef0-9cd7e12436cf/b0e167ba-7294-454e-bb50-8924f1495898_wxs_gdc_realn.bam 47398009746 BAM hg38 5018bc92-4cf5-417b-bef0-9cd7e12436cf MGI C3N-00556.WXS.T.hg38 C3N-00556 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8b7336d8-4946-4a96-bff9-5ba516019f15/03737151-19b0-46c6-a74d-cdc16b25f2cb_wxs_gdc_realn.bam 39235543242 BAM hg38 8b7336d8-4946-4a96-bff9-5ba516019f15 MGI +C3N-00559.WGS.N.hg38 C3N-00559 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//03d6029d-2a50-440e-9dc5-1799daed8b8f/7685dda3-cc9a-4907-af73-acc21efc3583_gdc_realn.bam 114031657078 BAM hg38 03d6029d-2a50-440e-9dc5-1799daed8b8f MGI C3N-00559.WXS.A.hg38 C3N-00559 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b2a51d3c-c4f3-47a8-92dc-19a20cb01217/69d53528-e5a2-4223-8504-be61bb8daad5_wxs_gdc_realn.bam 40944868022 BAM hg38 b2a51d3c-c4f3-47a8-92dc-19a20cb01217 MGI C3N-00559.WXS.N.hg38 C3N-00559 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7ec50742-f1e3-4b2b-b681-f676f17c3e47/7685dda3-cc9a-4907-af73-acc21efc3583_gdc_realn.bam 47945600076 BAM hg38 7ec50742-f1e3-4b2b-b681-f676f17c3e47 MGI C3N-00559.WXS.T.hg38 C3N-00559 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3be352f5-36d2-4123-ab6d-b4d416b82fb2/65bfd2f9-61ca-429d-943c-2d0989e04e6b_gdc_realn.bam 70598826119 BAM hg38 3be352f5-36d2-4123-ab6d-b4d416b82fb2 MGI C3N-00560.Targeted.T C3N-00560 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2c5f8866-5e5f-4715-9ea9-9bc7c611b436/CPT0068800006.CustomSelection.RP-1303.PDO-18786.bam 4019311723 BAM hg19 2c5f8866-5e5f-4715-9ea9-9bc7c611b436 MGI +C3N-00560.WGS.N.hg38 C3N-00560 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7f806b1f-28d1-42a7-b1f7-0becce284c16/4bf3027a-6c8c-4b4c-9fe9-9b9b9010d877_gdc_realn.bam 114554301344 BAM hg38 7f806b1f-28d1-42a7-b1f7-0becce284c16 MGI C3N-00560.WXS.A.hg38 C3N-00560 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d246405b-ef7e-422c-b5ce-7057da700d82/caf79275-5bf0-4f8a-9467-4ac0fa42ab41_wxs_gdc_realn.bam 54106976681 BAM hg38 d246405b-ef7e-422c-b5ce-7057da700d82 MGI C3N-00560.WXS.N.hg38 C3N-00560 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/accd545e-f33e-4ad8-9a31-1249a5a51290/4bf3027a-6c8c-4b4c-9fe9-9b9b9010d877_gdc_realn.bam 43028891230 BAM hg38 accd545e-f33e-4ad8-9a31-1249a5a51290 MGI C3N-00560.WXS.T.hg38 C3N-00560 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/8986d3b8-c817-4f96-a9e3-3842719e0735/5cc34d69-b52a-41a7-bf06-e5d2bce79815_gdc_realn.bam 43225649586 BAM hg38 8986d3b8-c817-4f96-a9e3-3842719e0735 MGI +C3N-00572.WGS.N.hg38 C3N-00572 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//653c7eba-d11a-484c-a1be-165489cc1f0c/64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 89844867590 BAM hg38 653c7eba-d11a-484c-a1be-165489cc1f0c MGI C3N-00572.WXS.A.hg38 C3N-00572 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b62351ca-071f-4a62-90bb-761b2056e392/8b5f7f24-c316-4b44-a5c9-bd5c73c35489_wxs_gdc_realn.bam 54076734396 BAM hg38 b62351ca-071f-4a62-90bb-761b2056e392 MGI C3N-00572.WXS.N.hg38 C3N-00572 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c3f65c9a-98de-42e6-a84a-c14713f503a3/64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 60474177791 BAM hg38 c3f65c9a-98de-42e6-a84a-c14713f503a3 MGI C3N-00572.WXS.T.hg38 C3N-00572 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/47edcd39-594b-4d96-b6c1-4e7332969669/16e085ef-aa13-4d9e-ad84-45d2fae7e8d6_gdc_realn.bam 45222865899 BAM hg38 47edcd39-594b-4d96-b6c1-4e7332969669 MGI @@ -2111,6 +2230,7 @@ C3N-00573.WXS.T.HET_r5pO96.hg38 C3N-00573 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3N-00573.WXS.T.HET_r5pPVw C3N-00573 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/dc98df8e-b119-4588-85f6-c5e77cfb412e/CPT0068990009.WholeExome.RP-1303.bam 20319562957 BAM hg19 dc98df8e-b119-4588-85f6-c5e77cfb412e MGI C3N-00573.WXS.T.HET_r5pPVw.hg38 C3N-00573 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b5cdbe53-9ebe-471d-b484-dfcd85091b0f/97244938-2af2-44f7-99b1-b7ca4c776293_wxs_gdc_realn.bam 27445546159 BAM hg38 b5cdbe53-9ebe-471d-b484-dfcd85091b0f MGI C3N-00573.WXS.T.hg38 C3N-00573 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fa3d2f42-f366-4dc6-a4a0-e49cddfc61dc/631f5939-bd6d-4a1e-8476-e2fee9ebe6c4_gdc_realn.bam 34690882500 BAM hg38 fa3d2f42-f366-4dc6-a4a0-e49cddfc61dc MGI +C3N-00574.WGS.N.hg38 C3N-00574 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//67547610-0b58-434f-9614-ea76869e12ea/dcda1140-7219-4b8b-a196-5400ac5946dc_wgs_gdc_realn.bam 103567306792 BAM hg38 67547610-0b58-434f-9614-ea76869e12ea MGI C3N-00574.WXS.A.hg38 C3N-00574 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/35177e04-9c3a-4416-b53a-64e3f1029268/6d88bc3f-a88e-41e9-ad9f-e8bec0970b8f_wxs_gdc_realn.bam 36740255073 BAM hg38 35177e04-9c3a-4416-b53a-64e3f1029268 MGI C3N-00574.WXS.N.hg38 C3N-00574 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/06f8e00c-d7a7-4f5a-8c46-cccac73b944e/dcda1140-7219-4b8b-a196-5400ac5946dc_wxs_gdc_realn.bam 36298025651 BAM hg38 06f8e00c-d7a7-4f5a-8c46-cccac73b944e MGI C3N-00574.WXS.T.hg38 C3N-00574 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e4f316ae-a7b3-4d9c-8726-723f16c008fc/98d420ef-b893-47dd-afe4-076b40ce8706_wxs_gdc_realn.bam 53794823717 BAM hg38 e4f316ae-a7b3-4d9c-8726-723f16c008fc MGI @@ -2123,12 +2243,15 @@ C3N-00577.WXS.T.HET_r5v2vK.hg38 C3N-00577 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3N-00577.WXS.T.HET_r5vZB4 C3N-00577 CCRCC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/dc931ec0-196f-45c7-8341-64676a20cad9/CPT0069170009.WholeExome.RP-1303.bam 19787142671 BAM hg19 dc931ec0-196f-45c7-8341-64676a20cad9 MGI C3N-00577.WXS.T.HET_r5vZB4.hg38 C3N-00577 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/09371cda-a798-43c1-946b-b816603cee27/49b836e4-e6ee-4a46-b4d9-d5a95d3bd2ec_wxs_gdc_realn.bam 27339869848 BAM hg38 09371cda-a798-43c1-946b-b816603cee27 MGI C3N-00577.WXS.T.hg38 C3N-00577 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bba7cbc0-bcd2-4af0-8c79-9a6ef01e6b5f/bc253ff3-cdd3-4751-87e2-e3b0f7bbc296_gdc_realn.bam 45374724155 BAM hg38 bba7cbc0-bcd2-4af0-8c79-9a6ef01e6b5f MGI +C3N-00578.WGS.N.hg38 C3N-00578 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e518755b-2764-44be-8f88-0bf85e76cc7b/85b468e2-00ad-4d47-8a84-9fca723b10f1_gdc_realn.bam 107174031068 BAM hg38 e518755b-2764-44be-8f88-0bf85e76cc7b MGI C3N-00578.WXS.A.hg38 C3N-00578 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eaf8f1e8-cb98-4865-a266-4d9fd9e230b2/1f8675db-dbe2-4bd5-8b17-4d48eb9d160e_wxs_gdc_realn.bam 36419560644 BAM hg38 eaf8f1e8-cb98-4865-a266-4d9fd9e230b2 MGI C3N-00578.WXS.N.hg38 C3N-00578 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7cede50e-f560-49e7-84a8-8e49ef4ec37b/85b468e2-00ad-4d47-8a84-9fca723b10f1_gdc_realn.bam 41055951318 BAM hg38 7cede50e-f560-49e7-84a8-8e49ef4ec37b MGI C3N-00578.WXS.T.hg38 C3N-00578 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/627c0174-3f47-4613-a77d-f19df49e01b2/18315848-20f3-4ef7-a5d1-c0768c4984c6_gdc_realn.bam 48831110243 BAM hg38 627c0174-3f47-4613-a77d-f19df49e01b2 MGI +C3N-00579.WGS.N.hg38 C3N-00579 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//25253adb-3482-4cd5-b105-2885c9ad1596/9d12c14d-211d-4cf6-af81-4fc8dd1a3137_gdc_realn.bam 135812098777 BAM hg38 25253adb-3482-4cd5-b105-2885c9ad1596 MGI C3N-00579.WXS.A.hg38 C3N-00579 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3163302d-193b-48a2-9905-889364e112c2/dd05d42d-edb7-4e61-98ef-cba8adb51d3a_wxs_gdc_realn.bam 33703011159 BAM hg38 3163302d-193b-48a2-9905-889364e112c2 MGI C3N-00579.WXS.N.hg38 C3N-00579 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d50d6aed-bd34-40b2-a2d6-2d60776e9e15/9d12c14d-211d-4cf6-af81-4fc8dd1a3137_gdc_realn.bam 37838325747 BAM hg38 d50d6aed-bd34-40b2-a2d6-2d60776e9e15 MGI C3N-00579.WXS.T.hg38 C3N-00579 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2da9db93-353a-467b-8fbf-3ed09771baf5/3b0ec8ca-2d1d-4773-a8f7-03788069163c_gdc_realn.bam 50611261435 BAM hg38 2da9db93-353a-467b-8fbf-3ed09771baf5 MGI +C3N-00580.WGS.N.hg38 C3N-00580 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//c9648eab-b01f-4ab0-8ad5-a63b7323aa0e/6e15d0f3-0d77-4d72-aacc-d35c497ec69c_gdc_realn.bam 106838139593 BAM hg38 c9648eab-b01f-4ab0-8ad5-a63b7323aa0e MGI C3N-00580.WXS.A.hg38 C3N-00580 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/50807bdd-58bf-4b01-bb03-5acec354b22e/cb195391-5ebe-4354-b07c-60f3a485eb8b_wxs_gdc_realn.bam 36662408680 BAM hg38 50807bdd-58bf-4b01-bb03-5acec354b22e MGI C3N-00580.WXS.N.hg38 C3N-00580 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/83ec5562-2cf9-4ddd-8c00-45b3a6d470e1/6e15d0f3-0d77-4d72-aacc-d35c497ec69c_gdc_realn.bam 56038595708 BAM hg38 83ec5562-2cf9-4ddd-8c00-45b3a6d470e1 MGI C3N-00580.WXS.T.hg38 C3N-00580 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/57a9a0dd-4854-4e7b-8214-c7701474fe6d/72ed37e7-d1fe-4c50-822f-e21c597750ba_gdc_realn.bam 51193005090 BAM hg38 57a9a0dd-4854-4e7b-8214-c7701474fe6d MGI @@ -2158,6 +2281,7 @@ C3N-00663.WXS.T.hg38 C3N-00663 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC C3N-00665.RNA-Seq.genomic.T.hg38 C3N-00665 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/21b0a3f7-7f87-418a-a63e-7f3d9fbe0814/48d1a5e8-481e-4b3f-94ac-6c297f0e3ef5.rna_seq.genomic.gdc_realn.bam 10594705486 BAM hg38 21b0a3f7-7f87-418a-a63e-7f3d9fbe0814 MGI C3N-00665.WXS.N.hg38 C3N-00665 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d7c0f0a4-302e-4d90-be01-3bd6592dd132/847e2c7e-5327-4064-a364-9e8c65bfd949_wxs_gdc_realn.bam 44750312807 BAM hg38 d7c0f0a4-302e-4d90-be01-3bd6592dd132 MGI C3N-00665.WXS.T.hg38 C3N-00665 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6cf5e1b4-e354-4404-b3e5-663bda86bbfb/f2365384-0941-41c2-8356-e5cb86183369_wxs_gdc_realn.bam 79664464021 BAM hg38 6cf5e1b4-e354-4404-b3e5-663bda86bbfb MGI +C3N-00704.WGS.N.hg38 C3N-00704 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e2d7bb33-913f-4649-818d-ea17dec28c73/577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 112962603484 BAM hg38 e2d7bb33-913f-4649-818d-ea17dec28c73 MGI C3N-00704.WXS.N.hg38 C3N-00704 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bec30983-31ae-4a8d-9c04-f784734a7778/577f7079-4da4-43ea-9534-77fa24c616ec_gdc_realn.bam 51455180690 BAM hg38 bec30983-31ae-4a8d-9c04-f784734a7778 MGI C3N-00704.WXS.T.hg38 C3N-00704 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/af19c433-8960-40a3-b375-c7c7d4300868/518bf809-26b7-44df-8594-e9d18ed203b8_gdc_realn.bam 42478616390 BAM hg38 af19c433-8960-40a3-b375-c7c7d4300868 MGI C3N-00709.WXS.N.hg38 C3N-00709 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f9e6a620-8f7b-4795-bcca-af44701a13a3/63f3b721-9c0d-4e06-99d0-d5dd1df27ba4_wxs_gdc_realn.bam 36813847743 BAM hg38 f9e6a620-8f7b-4795-bcca-af44701a13a3 MGI @@ -2181,9 +2305,11 @@ C3N-00733.WXS.T.HET_x2YPQz.hg38 C3N-00733 CCRCC WXS tumor /gscmnt/gc2741/ding/CP C3N-00733.WXS.T.hg38 C3N-00733 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2475e5cf-cadc-48ea-af0e-fc1b20eaf8a8/2ad75cb1-668a-4d5a-b62c-254e0b82d045_gdc_realn.bam 36133726733 BAM hg38 2475e5cf-cadc-48ea-af0e-fc1b20eaf8a8 MGI C3N-00734.WXS.N.hg38 C3N-00734 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c9c4d8b9-6c91-46e1-b6f8-d759c7f02165/d17afc43-9d34-4784-87aa-12c19595d871_gdc_realn.bam 63279979402 BAM hg38 c9c4d8b9-6c91-46e1-b6f8-d759c7f02165 MGI C3N-00734.WXS.T.hg38 C3N-00734 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b3fb76a3-c463-4fc1-b12c-88dbe5285071/0750565e-93eb-43b6-87d3-8f84199fc1a0_gdc_realn.bam 28616224542 BAM hg38 b3fb76a3-c463-4fc1-b12c-88dbe5285071 MGI +C3N-00737.WGS.N.hg38 C3N-00737 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//91814b2e-3f44-4380-8546-d155057cd989/fec6902d-836e-4e54-a217-9dfae7cce48e_wgs_gdc_realn.bam 92316798434 BAM hg38 91814b2e-3f44-4380-8546-d155057cd989 MGI C3N-00737.WXS.A.hg38 C3N-00737 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1aa8ed13-eb18-43ca-942d-3000af0faa8f/d97ee735-5b0e-4f83-8eab-9401da6506f9_wxs_gdc_realn.bam 39779367138 BAM hg38 1aa8ed13-eb18-43ca-942d-3000af0faa8f MGI C3N-00737.WXS.N.hg38 C3N-00737 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1e35483d-3edb-4be6-88ae-381b56a4b0c1/fec6902d-836e-4e54-a217-9dfae7cce48e_wxs_gdc_realn.bam 46886363270 BAM hg38 1e35483d-3edb-4be6-88ae-381b56a4b0c1 MGI C3N-00737.WXS.T.hg38 C3N-00737 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/05e7eacc-00d3-4660-9c77-6bf1c2d66645/0bf8d63d-3245-4ce1-8aab-f1fd4c0d94f6_wxs_gdc_realn.bam 46700398588 BAM hg38 05e7eacc-00d3-4660-9c77-6bf1c2d66645 MGI +C3N-00738.WGS.N.hg38 C3N-00738 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//30ae2920-9929-4fae-81b0-37460fc129af/685d5364-aae3-4291-8104-7f616deea3ef_wgs_gdc_realn.bam 97963432308 BAM hg38 30ae2920-9929-4fae-81b0-37460fc129af MGI C3N-00738.WXS.A.hg38 C3N-00738 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/df972ff7-76a0-4703-a9cd-a24fdc232f5c/643e6040-6a88-47a8-98d8-8ef4f1e2e9fb_wxs_gdc_realn.bam 48926508871 BAM hg38 df972ff7-76a0-4703-a9cd-a24fdc232f5c MGI C3N-00738.WXS.N.hg38 C3N-00738 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f5d24087-c903-45d6-8b09-0507bec897a8/685d5364-aae3-4291-8104-7f616deea3ef_wxs_gdc_realn.bam 54454146539 BAM hg38 f5d24087-c903-45d6-8b09-0507bec897a8 MGI C3N-00738.WXS.T.hg38 C3N-00738 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bb1b2e2f-49b2-4bf4-9c2b-bc78078baa74/3bd3461d-938c-44f1-96d1-232f0174c7cf_wxs_gdc_realn.bam 42246554098 BAM hg38 bb1b2e2f-49b2-4bf4-9c2b-bc78078baa74 MGI @@ -2268,6 +2394,7 @@ C3N-00957.WXS.A.hg38 C3N-00957 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3- C3N-00957.WXS.N.hg38 C3N-00957 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/aa13a00e-9297-410e-af11-4695f7753c31/e57bbda9-d5ab-49b3-a731-7b3050424f62_wxs_gdc_realn.bam 53899006822 BAM hg38 aa13a00e-9297-410e-af11-4695f7753c31 MGI C3N-00957.WXS.T.DEEP_roKgy2.hg38 C3N-00957 PDA WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/693cdc51-ab9c-4b7e-988b-39c94028c251/09adfee1-caef-414c-b95a-68ed0ce391a8_wxs_gdc_realn.bam 45791099037 BAM hg38 693cdc51-ab9c-4b7e-988b-39c94028c251 MGI C3N-00957.WXS.T.hg38.high_cov C3N-00957 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4d3af9f7-b24b-40fd-8471-5d5e4270d98b/35d8f6b0-b20d-4676-bb76-9416d7a5bd11_wxs_gdc_realn.bam 78682798708 BAM hg38 4d3af9f7-b24b-40fd-8471-5d5e4270d98b MGI +C3N-00959.WGS.N.hg38 C3N-00959 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//86018d06-3354-4a51-8200-591a3071350a/8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 112542448845 BAM hg38 86018d06-3354-4a51-8200-591a3071350a MGI C3N-00959.WXS.A.hg38 C3N-00959 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/947a7bdb-5a00-47e8-a1f0-79e7d8932a26/e57ae3c6-fdc3-428f-a274-35a0ae813f7b_wxs_gdc_realn.bam 36310452650 BAM hg38 947a7bdb-5a00-47e8-a1f0-79e7d8932a26 MGI C3N-00959.WXS.N.hg38 C3N-00959 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bb389d60-4210-4de4-bfb0-50e66395d661/8e83ef46-d267-45b7-917e-b9e9e4bdb363_gdc_realn.bam 42133332087 BAM hg38 bb389d60-4210-4de4-bfb0-50e66395d661 MGI C3N-00959.WXS.T.hg38 C3N-00959 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a7f53506-333d-46c9-bc5f-9a5d66d1233b/ab74ba2c-c2fc-4dc1-9d4b-943680f7b486_gdc_realn.bam 31562863338 BAM hg38 a7f53506-333d-46c9-bc5f-9a5d66d1233b MGI @@ -2284,48 +2411,61 @@ C3N-01011.WXS.N.hg38 C3N-01011 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-d C3N-01011.WXS.T.hg38.high_cov C3N-01011 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0171d6cd-6e09-4a21-b80f-16d6945a1305/1c06e887-12a2-4aa6-9ac8-6daee0f8d626_wxs_gdc_realn.bam 68513067980 BAM hg38 0171d6cd-6e09-4a21-b80f-16d6945a1305 MGI C3N-01012.WXS.N.hg38 C3N-01012 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9fc21853-b8f0-49d6-a14d-7efc2e5a08a2/999b4985-3f54-41a7-bdd3-8ecf55ba1669_wxs_gdc_realn.bam 32940988027 BAM hg38 9fc21853-b8f0-49d6-a14d-7efc2e5a08a2 MGI C3N-01012.WXS.T.hg38.high_cov C3N-01012 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b06b0ca4-9d1a-427e-88e9-5c2b39c8e300/ecb04ff6-c2a9-4dd2-a7ad-4003f7602332_wxs_gdc_realn.bam 73603199842 BAM hg38 b06b0ca4-9d1a-427e-88e9-5c2b39c8e300 MGI +C3N-01016.WGS.N.hg38 C3N-01016 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//57eee6a7-effa-4a86-953f-77dac8c309a5/5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 97369674939 BAM hg38 57eee6a7-effa-4a86-953f-77dac8c309a5 MGI C3N-01016.WXS.A.hg38 C3N-01016 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/127d5ffc-d163-4fde-80d8-454928db8fe4/a6ab0136-7ec4-4ec9-9f29-415c78515d9c_wxs_gdc_realn.bam 41126662381 BAM hg38 127d5ffc-d163-4fde-80d8-454928db8fe4 MGI C3N-01016.WXS.N.hg38 C3N-01016 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3b919d7b-c595-4318-b9e2-2ac73303b590/5fcf480f-d48f-4fd6-940b-051912cd9943_gdc_realn.bam 31842930452 BAM hg38 3b919d7b-c595-4318-b9e2-2ac73303b590 MGI C3N-01016.WXS.T.hg38 C3N-01016 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4951d2d3-d7b8-4ae0-a4e4-f6b2eb998334/b7314944-d4d1-4f1c-9359-5c631f7c5041_gdc_realn.bam 45058626386 BAM hg38 4951d2d3-d7b8-4ae0-a4e4-f6b2eb998334 MGI +C3N-01017.WGS.N.hg38 C3N-01017 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//0a6de050-ae97-46ce-af90-687cab44d66d/f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 113216154553 BAM hg38 0a6de050-ae97-46ce-af90-687cab44d66d MGI C3N-01017.WXS.A.hg38 C3N-01017 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/4018c39a-2ac4-4f5b-8b4b-6508618e8ec8/77ab1337-2692-4476-bb3f-0b72a3a80b95_wxs_gdc_realn.bam 42077182076 BAM hg38 4018c39a-2ac4-4f5b-8b4b-6508618e8ec8 MGI C3N-01017.WXS.N.hg38 C3N-01017 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c8f97c22-a5e5-4a29-82ac-94a83be13c2c/f7c268a1-b7d6-4e9a-891d-55de4dccae4a_gdc_realn.bam 44133525864 BAM hg38 c8f97c22-a5e5-4a29-82ac-94a83be13c2c MGI C3N-01017.WXS.T.hg38 C3N-01017 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d7ebebd0-c42f-4400-8ad9-45dc1e698712/e4f28c38-427f-4133-9424-10f35a261de4_gdc_realn.bam 38182844792 BAM hg38 d7ebebd0-c42f-4400-8ad9-45dc1e698712 MGI +C3N-01018.WGS.N.hg38 C3N-01018 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4f7a0c9b-8708-4f8f-8de2-1ea3a7a6b13a/32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wgs_gdc_realn.bam 94743426427 BAM hg38 4f7a0c9b-8708-4f8f-8de2-1ea3a7a6b13a MGI C3N-01018.WXS.A.hg38 C3N-01018 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1e09caf3-763a-4cd9-8499-b27e49e17534/159fc77a-455a-46de-9c44-faa86e646fc2_wxs_gdc_realn.bam 41694356585 BAM hg38 1e09caf3-763a-4cd9-8499-b27e49e17534 MGI C3N-01018.WXS.N.hg38 C3N-01018 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/19750858-9f8a-45c7-86f3-21042eac7e55/32cbd60f-52ec-4d82-890e-098dcb8e0c6f_wxs_gdc_realn.bam 52895464723 BAM hg38 19750858-9f8a-45c7-86f3-21042eac7e55 MGI C3N-01018.WXS.T.hg38 C3N-01018 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d2a6cd4d-1f0a-4794-b356-45cfe9f20f4c/267cd1b6-4e5c-4cc7-9909-d0a3a7132719_wxs_gdc_realn.bam 52053567840 BAM hg38 d2a6cd4d-1f0a-4794-b356-45cfe9f20f4c MGI C3N-01019.WXS.A.hg38 C3N-01019 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/99d90ef5-e5d3-49fb-be96-5db763123adc/90b0c8c6-9e8d-4015-8c68-3a96adee4184_wxs_gdc_realn.bam 44483135862 BAM hg38 99d90ef5-e5d3-49fb-be96-5db763123adc MGI C3N-01019.WXS.N.hg38 C3N-01019 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/153f503c-3d72-491c-b851-081b86a14f54/2fd642b2-49e4-47ed-aa09-e55d1f01ec59_wxs_gdc_realn.bam 43124318089 BAM hg38 153f503c-3d72-491c-b851-081b86a14f54 MGI C3N-01019.WXS.T.hg38 C3N-01019 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/16373001-dc4a-42d6-9042-944b0cb8fd38/bf84a979-446c-47ae-98e4-c4bbb443e928_wxs_gdc_realn.bam 33899352637 BAM hg38 16373001-dc4a-42d6-9042-944b0cb8fd38 MGI +C3N-01020.WGS.N.hg38 C3N-01020 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7c748ffc-76da-402c-ac35-3eacdffed03e/3a7b901e-d06f-42da-9914-eef74275e002_wgs_gdc_realn.bam 87425000059 BAM hg38 7c748ffc-76da-402c-ac35-3eacdffed03e MGI C3N-01020.WXS.N.hg38 C3N-01020 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b768e63b-8d6f-4162-bdf2-2b22861890de/3a7b901e-d06f-42da-9914-eef74275e002_wxs_gdc_realn.bam 41103495021 BAM hg38 b768e63b-8d6f-4162-bdf2-2b22861890de MGI C3N-01020.WXS.T.hg38 C3N-01020 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/98bded88-48e5-4719-a4f0-105276d13bd2/61e19b63-df4f-459e-9ca0-97e943d855d9_wxs_gdc_realn.bam 28644766104 BAM hg38 98bded88-48e5-4719-a4f0-105276d13bd2 MGI +C3N-01021.WGS.N.hg38 C3N-01021 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//10064d24-13b8-4350-81c2-27d5e1448f2d/fc900e46-4670-4fd9-ab78-ce18452fcb32_wgs_gdc_realn.bam 114065162253 BAM hg38 10064d24-13b8-4350-81c2-27d5e1448f2d MGI C3N-01021.WXS.A.hg38 C3N-01021 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7ca007f5-1403-4a23-b90b-211b39ecfdac/d7d51562-4b03-475f-957a-18bf0fe7ffa5_wxs_gdc_realn.bam 52040747726 BAM hg38 7ca007f5-1403-4a23-b90b-211b39ecfdac MGI C3N-01021.WXS.N.hg38 C3N-01021 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/37caa502-9001-4efb-933f-3d6df36c8123/fc900e46-4670-4fd9-ab78-ce18452fcb32_wxs_gdc_realn.bam 50208440021 BAM hg38 37caa502-9001-4efb-933f-3d6df36c8123 MGI C3N-01021.WXS.T.hg38 C3N-01021 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f5a5607b-9237-4ad9-88a2-ef219be0c0e7/6e8c1ae0-ff66-4df1-834d-ce7788106d40_wxs_gdc_realn.bam 50946474273 BAM hg38 f5a5607b-9237-4ad9-88a2-ef219be0c0e7 MGI C3N-01022.WXS.A.hg38 C3N-01022 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9edbb702-e019-46ed-a5d9-3d6d47111ca3/9cbde4df-30cf-4aef-97ef-0190d2560088_wxs_gdc_realn.bam 55456331759 BAM hg38 9edbb702-e019-46ed-a5d9-3d6d47111ca3 MGI C3N-01022.WXS.N.hg38 C3N-01022 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1fee2414-de0c-498e-9565-1b57bae644a9/847f97f0-8f4d-4eec-863c-fc85b03fb427_wxs_gdc_realn.bam 56118013262 BAM hg38 1fee2414-de0c-498e-9565-1b57bae644a9 MGI C3N-01022.WXS.T.hg38 C3N-01022 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9cf0d0e0-3c0a-4394-8c7f-a5bfd8b535a1/b7e86b11-9879-4353-b6de-b87af018efdd_wxs_gdc_realn.bam 48201307227 BAM hg38 9cf0d0e0-3c0a-4394-8c7f-a5bfd8b535a1 MGI +C3N-01023.WGS.N.hg38 C3N-01023 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ea1cc5e5-bf38-4299-b85c-af8c57c4dc76/6fe094ac-6df4-4439-8fe5-b4478e811ba2_wgs_gdc_realn.bam 114609434920 BAM hg38 ea1cc5e5-bf38-4299-b85c-af8c57c4dc76 MGI C3N-01023.WXS.A.hg38 C3N-01023 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8411bed9-2b4d-422c-8484-ac5b37d75445/f52bd70a-0ab5-40d5-8c52-471fe67007c4_wxs_gdc_realn.bam 40736560873 BAM hg38 8411bed9-2b4d-422c-8484-ac5b37d75445 MGI C3N-01023.WXS.N.hg38 C3N-01023 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ea279111-7dee-4109-9eef-1dc0c7c48bc8/6fe094ac-6df4-4439-8fe5-b4478e811ba2_wxs_gdc_realn.bam 34660210979 BAM hg38 ea279111-7dee-4109-9eef-1dc0c7c48bc8 MGI C3N-01023.WXS.T.hg38 C3N-01023 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/11ccfeaf-bedc-4a9b-876a-29708e14f98e/f1cb7bcc-d5c8-49fa-a282-7a3d77692341_wxs_gdc_realn.bam 45839232980 BAM hg38 11ccfeaf-bedc-4a9b-876a-29708e14f98e MGI +C3N-01024.WGS.N.hg38 C3N-01024 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//96403b4d-7d4d-4740-9cf9-2c544882f6a5/56936176-1fa4-4fab-8558-c250f52613e2_wgs_gdc_realn.bam 90661453856 BAM hg38 96403b4d-7d4d-4740-9cf9-2c544882f6a5 MGI C3N-01024.WXS.A.hg38 C3N-01024 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/763dce08-6661-42b5-baf6-4ba4e87a6f44/b5e049c4-a147-488f-8545-70c5ade90d94_wxs_gdc_realn.bam 36362860228 BAM hg38 763dce08-6661-42b5-baf6-4ba4e87a6f44 MGI C3N-01024.WXS.N.hg38 C3N-01024 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/04a3af93-4f72-430b-9c69-6b67fd8ccd24/56936176-1fa4-4fab-8558-c250f52613e2_wxs_gdc_realn.bam 40956944679 BAM hg38 04a3af93-4f72-430b-9c69-6b67fd8ccd24 MGI C3N-01024.WXS.T.hg38 C3N-01024 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/917300e1-0d7e-4d09-80a5-65672f9f2abd/b054d196-6194-469f-aa49-62037b18d803_wxs_gdc_realn.bam 53574144778 BAM hg38 917300e1-0d7e-4d09-80a5-65672f9f2abd MGI +C3N-01025.WGS.N.hg38 C3N-01025 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2aa47188-a36b-436f-9fa8-38fa65d43168/deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 106684041857 BAM hg38 2aa47188-a36b-436f-9fa8-38fa65d43168 MGI C3N-01025.WXS.A.hg38 C3N-01025 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7dff52b7-6d06-4c47-bb09-551496226f51/8fec352a-9f29-4192-9cf7-4e168121d65a_wxs_gdc_realn.bam 35272404645 BAM hg38 7dff52b7-6d06-4c47-bb09-551496226f51 MGI C3N-01025.WXS.N.hg38 C3N-01025 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/70c998a7-7458-4e01-b2f9-d6f11ff36c7c/deaf3afa-6124-4a78-963e-99548e4a01e7_gdc_realn.bam 37319544478 BAM hg38 70c998a7-7458-4e01-b2f9-d6f11ff36c7c MGI C3N-01025.WXS.T.hg38 C3N-01025 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b90e9e68-b77d-4b34-b30b-67f097fd6fca/ec4f4827-a41c-44ff-b5d8-dfaa16db54a3_gdc_realn.bam 43244656893 BAM hg38 b90e9e68-b77d-4b34-b30b-67f097fd6fca MGI +C3N-01028.WGS.N.hg38 C3N-01028 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ea1eecac-2f2c-4e5a-9b16-d3b0d7c8a7e6/b5b5f651-2f29-457b-b99c-9b08ba7238da_wgs_gdc_realn.bam 89663607689 BAM hg38 ea1eecac-2f2c-4e5a-9b16-d3b0d7c8a7e6 MGI C3N-01028.WXS.A.hg38 C3N-01028 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/ae20979a-153b-4f5e-a329-93f7e0688429/559f5fdf-bd53-4226-8288-4cf99d291e00_wxs_gdc_realn.bam 41290980391 BAM hg38 ae20979a-153b-4f5e-a329-93f7e0688429 MGI C3N-01028.WXS.N.hg38 C3N-01028 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d72971a0-0f9c-4978-aeaf-441aa81fc4a5/b5b5f651-2f29-457b-b99c-9b08ba7238da_wxs_gdc_realn.bam 44712262207 BAM hg38 d72971a0-0f9c-4978-aeaf-441aa81fc4a5 MGI C3N-01028.WXS.T.hg38 C3N-01028 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/c77c4468-8abe-4c08-b6ce-ee23313abc6e/5447f151-e584-4e44-97c2-781182eb562a_wxs_gdc_realn.bam 55407991570 BAM hg38 c77c4468-8abe-4c08-b6ce-ee23313abc6e MGI +C3N-01030.WGS.N.hg38 C3N-01030 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7772f460-5f6f-4696-ac37-33d05f47a1ae/8e390124-ff80-417f-b8c3-a611f6e4fcbe_wgs_gdc_realn.bam 99833243257 BAM hg38 7772f460-5f6f-4696-ac37-33d05f47a1ae MGI C3N-01030.WXS.A.hg38 C3N-01030 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f9c42796-05c9-4a06-b767-7636f148387a/b8952bf8-d01a-4ea8-bb07-957e3cc6fd55_wxs_gdc_realn.bam 40791022357 BAM hg38 f9c42796-05c9-4a06-b767-7636f148387a MGI C3N-01030.WXS.N.hg38 C3N-01030 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3f1ca67d-07df-4c01-a671-0f19f5742dc1/8e390124-ff80-417f-b8c3-a611f6e4fcbe_wxs_gdc_realn.bam 35423496965 BAM hg38 3f1ca67d-07df-4c01-a671-0f19f5742dc1 MGI C3N-01030.WXS.T.hg38 C3N-01030 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/51279e23-b65d-43ee-a12f-f4ce44f3a8c4/d75c8fba-a99e-4930-b9fe-514d1e6db377_wxs_gdc_realn.bam 38477441184 BAM hg38 51279e23-b65d-43ee-a12f-f4ce44f3a8c4 MGI C3N-01071.Targeted.T C3N-01071 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0fcaad4c-22d4-41dd-a033-d0596730c792/CPT0070060006.CustomSelection.RP-1303.PDO-18786.bam 7895288857 BAM hg19 0fcaad4c-22d4-41dd-a033-d0596730c792 MGI +C3N-01071.WGS.N.hg38 C3N-01071 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a252f982-d631-44eb-a70b-0bd283386cb3/aee98919-02bc-4677-80c2-675b148f9d7b_gdc_realn.bam 110229586482 BAM hg38 a252f982-d631-44eb-a70b-0bd283386cb3 MGI C3N-01071.WXS.A.hg38 C3N-01071 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/577e1de1-f58a-47c0-93e7-b8ad050e6fe9/f5a98d66-4ef1-4359-8e11-998be462953e_wxs_gdc_realn.bam 53998923183 BAM hg38 577e1de1-f58a-47c0-93e7-b8ad050e6fe9 MGI C3N-01071.WXS.N.hg38 C3N-01071 LUAD WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/846f177b-75df-4e30-a921-222756fb3a62/aee98919-02bc-4677-80c2-675b148f9d7b_gdc_realn.bam 44855601786 BAM hg38 846f177b-75df-4e30-a921-222756fb3a62 MGI C3N-01071.WXS.T.hg38 C3N-01071 LUAD WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b06453df-4a46-4c8a-91c2-2df02c8acf3c/cc5cdc32-6156-4237-8640-0855f5c3ba0a_gdc_realn.bam 44541647564 BAM hg38 b06453df-4a46-4c8a-91c2-2df02c8acf3c MGI +C3N-01072.WGS.N.hg38 C3N-01072 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//783cd0c2-4d15-4848-860d-4bf5bc222cdc/b667954b-08c5-40d6-ba47-697814f6e1b0_wgs_gdc_realn.bam 88398668137 BAM hg38 783cd0c2-4d15-4848-860d-4bf5bc222cdc MGI C3N-01072.WXS.A.hg38 C3N-01072 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/57cf119d-c924-4004-b61e-ecf48a4a2d0d/82a84fd7-6aea-457a-8a7b-1e5b55ff8ba0_wxs_gdc_realn.bam 61475550886 BAM hg38 57cf119d-c924-4004-b61e-ecf48a4a2d0d MGI C3N-01072.WXS.N.hg38 C3N-01072 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0170c81b-a67f-4609-bf36-9e33f571350f/b667954b-08c5-40d6-ba47-697814f6e1b0_wxs_gdc_realn.bam 47682532179 BAM hg38 0170c81b-a67f-4609-bf36-9e33f571350f MGI C3N-01072.WXS.T.hg38 C3N-01072 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f95231ee-33c9-4d9e-9053-05db2dcc34d2/76279939-7003-484f-b026-9560e85eab31_wxs_gdc_realn.bam 48910624723 BAM hg38 f95231ee-33c9-4d9e-9053-05db2dcc34d2 MGI +C3N-01074.WGS.N.hg38 C3N-01074 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7c3c4966-40ee-433a-b1e6-f526fc0b3085/ba41c945-fc52-4c8e-b417-c26730c05dfb_wgs_gdc_realn.bam 87202550854 BAM hg38 7c3c4966-40ee-433a-b1e6-f526fc0b3085 MGI C3N-01074.WXS.N.hg38 C3N-01074 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/717fbef0-092e-4897-8d11-2235c45bc508/ba41c945-fc52-4c8e-b417-c26730c05dfb_wxs_gdc_realn.bam 57202031288 BAM hg38 717fbef0-092e-4897-8d11-2235c45bc508 MGI C3N-01074.WXS.T.hg38 C3N-01074 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/57874edd-2bce-423c-ac14-e35d46255524/5968cc7b-3769-4e06-999a-61df8bfcd5e2_wxs_gdc_realn.bam 55221091493 BAM hg38 57874edd-2bce-423c-ac14-e35d46255524 MGI C3N-01077.WXS.A.hg38 C3N-01077 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/45e10a25-e4f9-4724-8fd7-5d43739121b2/90a3f5b4-4ef3-4151-8361-d14929c06c41_wxs_gdc_realn.bam 33144592993 BAM hg38 45e10a25-e4f9-4724-8fd7-5d43739121b2 MGI @@ -2399,6 +2539,7 @@ C3N-01180.WXS.T.hg38 C3N-01180 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3N-01192.RNA-Seq.genomic.T.hg38 C3N-01192 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e1ec644b-7002-4aec-91d1-aa303c98570a/f5ad6e9c-5dee-42b6-b888-503901774a06.rna_seq.genomic.gdc_realn.bam 10153281574 BAM hg38 e1ec644b-7002-4aec-91d1-aa303c98570a MGI C3N-01192.WXS.N.hg38 C3N-01192 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/69f9c1f6-3720-4de1-a3fa-23560dd44808/300522b0-ac2f-4ec7-a5ae-cd55519df19c_wxs_gdc_realn.bam 74498408960 BAM hg38 69f9c1f6-3720-4de1-a3fa-23560dd44808 MGI C3N-01192.WXS.T.hg38 C3N-01192 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/09439c02-183b-4af9-a4dd-3b6376512893/b4dc9536-147b-46cf-b704-dc9244cb3980_wxs_gdc_realn.bam 66820989081 BAM hg38 09439c02-183b-4af9-a4dd-3b6376512893 MGI +C3N-01194.WGS.N.hg38 C3N-01194 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//fab46b3d-6bde-43a2-8633-1eed8864948d/8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 115706074766 BAM hg38 fab46b3d-6bde-43a2-8633-1eed8864948d MGI C3N-01194.WXS.A.hg38 C3N-01194 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e8b2e887-2d06-4bc3-a352-928a16162f5e/5d4a1c91-6ea9-4957-bf09-2e47110b99c6_wxs_gdc_realn.bam 39685634224 BAM hg38 e8b2e887-2d06-4bc3-a352-928a16162f5e MGI C3N-01194.WXS.N.hg38 C3N-01194 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/46d74866-1e75-4cc7-b4ff-edeed248f414/8e7cdb9e-d990-47dd-9487-ef12fbe05cc3_gdc_realn.bam 31924995429 BAM hg38 46d74866-1e75-4cc7-b4ff-edeed248f414 MGI C3N-01194.WXS.T.hg38 C3N-01194 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/0774820d-b180-46e1-90c9-6fef4686d7c2/7a1a881e-51c3-46c4-bf78-fffcb8fde6b8_gdc_realn.bam 42502208887 BAM hg38 0774820d-b180-46e1-90c9-6fef4686d7c2 MGI @@ -2526,6 +2667,7 @@ C3N-01388.WXS.N.hg38 C3N-01388 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-d C3N-01388.WXS.T.hg38.high_cov C3N-01388 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d265f537-27ae-4bae-a423-5982db188060/ff400a50-05bf-4e12-8e8d-8cc536ad958f_wxs_gdc_realn.bam 91268997010 BAM hg38 d265f537-27ae-4bae-a423-5982db188060 MGI C3N-01389.WXS.N.hg38 C3N-01389 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3b0a17bb-f66d-4956-a232-70674f20a906/b74b28ae-8f2c-4961-a8ab-4de81575097b_gdc_realn.bam 49288290722 BAM hg38 3b0a17bb-f66d-4956-a232-70674f20a906 MGI C3N-01389.WXS.T.hg38.high_cov C3N-01389 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b3493433-399d-48cd-aa70-da3061506ef2/8c5c2643-dab3-4ac1-aad1-c77aea04ba1b_wxs_gdc_realn.bam 97549148772 BAM hg38 b3493433-399d-48cd-aa70-da3061506ef2 MGI +C3N-01405.WGS.N.hg38 C3N-01405 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//981ba4e3-b8da-46fb-a76a-60f54d54b658/c0ecdf32-03f0-4477-b8b8-2076179897c2_wgs_gdc_realn.bam 97764422994 BAM hg38 981ba4e3-b8da-46fb-a76a-60f54d54b658 MGI C3N-01405.WXS.A.hg38 C3N-01405 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c40181dd-7f5e-41d9-ac92-6f74748c28ee/f7af3bf6-4828-47f9-ae3c-abf49383d460_wxs_gdc_realn.bam 44657722060 BAM hg38 c40181dd-7f5e-41d9-ac92-6f74748c28ee MGI C3N-01405.WXS.N.hg38 C3N-01405 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fedf7298-36a6-4f2b-ab29-a1d7c7b08065/c0ecdf32-03f0-4477-b8b8-2076179897c2_wxs_gdc_realn.bam 34672421627 BAM hg38 fedf7298-36a6-4f2b-ab29-a1d7c7b08065 MGI C3N-01405.WXS.T.hg38 C3N-01405 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7950b8fe-e745-4cca-a82c-7ad0d53da17e/6b88df6d-f5d6-4cb2-a387-21454d087768_wxs_gdc_realn.bam 41866456645 BAM hg38 7950b8fe-e745-4cca-a82c-7ad0d53da17e MGI @@ -2535,21 +2677,27 @@ C3N-01408.WXS.T.hg38 C3N-01408 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3N-01409.WXS.A.hg38 C3N-01409 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/17ba827f-faa8-4e32-8ca6-0ae3200d7633/9cb78bb5-67c4-440e-af60-c9670e654b32_wxs_gdc_realn.bam 49151011338 BAM hg38 17ba827f-faa8-4e32-8ca6-0ae3200d7633 MGI C3N-01409.WXS.N.hg38 C3N-01409 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/db9aeba9-4731-47d2-ac26-7b4ed0c2a974/08438895-c812-4f21-a19e-5325fd71ea4e_wxs_gdc_realn.bam 51519647407 BAM hg38 db9aeba9-4731-47d2-ac26-7b4ed0c2a974 MGI C3N-01409.WXS.T.hg38 C3N-01409 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e166dbd6-3c34-4b9c-8879-5c47000c8706/41b2a428-85aa-49c5-830d-580bad9d1f54_wxs_gdc_realn.bam 56413187940 BAM hg38 e166dbd6-3c34-4b9c-8879-5c47000c8706 MGI +C3N-01410.WGS.N.hg38 C3N-01410 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//add0603d-9625-460c-8a66-b9c81e393089/45c7d850-8bb3-4612-96c3-b0bb98f852bb_wgs_gdc_realn.bam 109312711989 BAM hg38 add0603d-9625-460c-8a66-b9c81e393089 MGI C3N-01410.WXS.A.hg38 C3N-01410 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/13fd4285-a59e-4a75-a323-7ea77214da69/72ac40bc-46e6-4e4e-9419-7e99bd8963c2_wxs_gdc_realn.bam 52438576231 BAM hg38 13fd4285-a59e-4a75-a323-7ea77214da69 MGI C3N-01410.WXS.N.hg38 C3N-01410 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/943737e6-0e86-4102-8442-3b667534828e/45c7d850-8bb3-4612-96c3-b0bb98f852bb_wxs_gdc_realn.bam 37779366513 BAM hg38 943737e6-0e86-4102-8442-3b667534828e MGI C3N-01410.WXS.T.hg38 C3N-01410 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e0f1fe45-5cb3-4c9f-9269-0a4fefed8203/7c2971d4-40a3-41cd-92fd-3a771f40870f_wxs_gdc_realn.bam 45464901730 BAM hg38 e0f1fe45-5cb3-4c9f-9269-0a4fefed8203 MGI +C3N-01411.WGS.N.hg38 C3N-01411 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b5576da5-a68b-4802-aa1d-48b3864d3b62/b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wgs_gdc_realn.bam 93048772168 BAM hg38 b5576da5-a68b-4802-aa1d-48b3864d3b62 MGI C3N-01411.WXS.A.hg38 C3N-01411 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/094abc04-cf67-4d82-9df0-814c88fb542f/809c752d-b093-4490-8cf6-06ce2f158553_wxs_gdc_realn.bam 42795343630 BAM hg38 094abc04-cf67-4d82-9df0-814c88fb542f MGI C3N-01411.WXS.N.hg38 C3N-01411 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3fe87e46-aa3d-47ce-9062-a38a810a865a/b1dc0f80-5d31-403e-a85a-2afaac9dcddf_wxs_gdc_realn.bam 51569469902 BAM hg38 3fe87e46-aa3d-47ce-9062-a38a810a865a MGI C3N-01411.WXS.T.hg38 C3N-01411 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b5017ec2-6360-477d-9c94-dd7c64c0661c/61b7c6e3-19c0-4e15-98ea-980978ff2e95_wxs_gdc_realn.bam 57671420131 BAM hg38 b5017ec2-6360-477d-9c94-dd7c64c0661c MGI +C3N-01413.WGS.N.hg38 C3N-01413 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ee6fdbf4-69c1-4f29-88c4-b79d1cfdfa35/87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wgs_gdc_realn.bam 103029558776 BAM hg38 ee6fdbf4-69c1-4f29-88c4-b79d1cfdfa35 MGI C3N-01413.WXS.A.hg38 C3N-01413 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/018a1f87-4bce-41ca-a20e-ef864efb9f18/a3b2cfbe-fced-4899-9451-5d48b5ea312b_wxs_gdc_realn.bam 43724406306 BAM hg38 018a1f87-4bce-41ca-a20e-ef864efb9f18 MGI C3N-01413.WXS.N.hg38 C3N-01413 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/de9f3c3f-bec0-4446-b5f4-1710bb13ce59/87c5e2eb-49ba-47c4-8f8d-a99d26927ff9_wxs_gdc_realn.bam 41957041045 BAM hg38 de9f3c3f-bec0-4446-b5f4-1710bb13ce59 MGI C3N-01413.WXS.T.hg38 C3N-01413 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d83b9b3e-feee-4bfb-8c6b-0db082c6bace/81f9ede6-25c7-4ade-85de-a5cbeff94b5a_wxs_gdc_realn.bam 48621075899 BAM hg38 d83b9b3e-feee-4bfb-8c6b-0db082c6bace MGI +C3N-01414.WGS.N.hg38 C3N-01414 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e231ae6c-09d8-44e4-8a45-008a878ab47d/183943be-60df-4118-a3f0-201d8a47ea32_wgs_gdc_realn.bam 92015005598 BAM hg38 e231ae6c-09d8-44e4-8a45-008a878ab47d MGI C3N-01414.WXS.A.hg38 C3N-01414 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fd25bc25-686a-4b1a-85c9-a0fbf37c9416/9e9cb2b0-2f66-4c7d-b089-636bbf836201_wxs_gdc_realn.bam 56532798684 BAM hg38 fd25bc25-686a-4b1a-85c9-a0fbf37c9416 MGI C3N-01414.WXS.N.hg38 C3N-01414 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/45b1fbc9-c2e9-45d7-b319-145b351c44c0/183943be-60df-4118-a3f0-201d8a47ea32_wxs_gdc_realn.bam 56607425959 BAM hg38 45b1fbc9-c2e9-45d7-b319-145b351c44c0 MGI C3N-01414.WXS.T.hg38 C3N-01414 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fc64d455-7ca8-48aa-92dc-c9b79f829195/b561fdeb-94f7-49ab-addf-0fcf2d85c0c1_wxs_gdc_realn.bam 42174857691 BAM hg38 fc64d455-7ca8-48aa-92dc-c9b79f829195 MGI +C3N-01415.WGS.N.hg38 C3N-01415 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//c8793c70-5eef-40ff-a809-e3e119cde00e/741b4489-01b4-465d-a82f-8ac84fb1222a_wgs_gdc_realn.bam 90689167104 BAM hg38 c8793c70-5eef-40ff-a809-e3e119cde00e MGI C3N-01415.WXS.A.hg38 C3N-01415 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f1a47208-77cd-43b8-80d7-163ef8a433c5/f789f3c0-99bd-4533-a965-3f60d0df875a_wxs_gdc_realn.bam 47872331926 BAM hg38 f1a47208-77cd-43b8-80d7-163ef8a433c5 MGI C3N-01415.WXS.N.hg38 C3N-01415 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/44ea40a7-a4b2-4a8e-969d-c1d477bc5647/741b4489-01b4-465d-a82f-8ac84fb1222a_wxs_gdc_realn.bam 64763809362 BAM hg38 44ea40a7-a4b2-4a8e-969d-c1d477bc5647 MGI C3N-01415.WXS.T.hg38 C3N-01415 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b60bda2a-2b47-47ea-9682-19d13f5dcea0/a386fafe-f46f-429d-bf4b-9e690dc806fe_wxs_gdc_realn.bam 59289793995 BAM hg38 b60bda2a-2b47-47ea-9682-19d13f5dcea0 MGI +C3N-01416.WGS.N.hg38 C3N-01416 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//274c97d1-0762-4686-8f16-b1c26a45d0ca/34a91d65-a389-4d30-ba52-722d20799fa8_wgs_gdc_realn.bam 88232966345 BAM hg38 274c97d1-0762-4686-8f16-b1c26a45d0ca MGI C3N-01416.WXS.A.hg38 C3N-01416 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/126a09a5-c538-4417-b622-c932e62c4e62/c1f2d7df-cfd6-4015-affb-a2f7c2b74ad7_wxs_gdc_realn.bam 36882227856 BAM hg38 126a09a5-c538-4417-b622-c932e62c4e62 MGI C3N-01416.WXS.N.hg38 C3N-01416 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ac7071e8-a335-4ba0-bfc3-5ffcd12334bc/34a91d65-a389-4d30-ba52-722d20799fa8_wxs_gdc_realn.bam 49112937400 BAM hg38 ac7071e8-a335-4ba0-bfc3-5ffcd12334bc MGI C3N-01416.WXS.T.hg38 C3N-01416 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d90450bc-aa17-4938-b216-ab28e8815c36/19259be0-acf2-4826-b674-fea6f2fe6889_wxs_gdc_realn.bam 31795779041 BAM hg38 d90450bc-aa17-4938-b216-ab28e8815c36 MGI @@ -2559,9 +2707,11 @@ C3N-01417.WXS.T.hg38 C3N-01417 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3N-01419.WXS.A.ADNA_q19J5R.hg38 C3N-01419 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bbd7996a-16de-44ee-b0d7-959819b02e9b/41fbeb7b-f0e1-4923-99d4-bf779f8459f2_wxs_gdc_realn.bam 26719876766 BAM hg38 bbd7996a-16de-44ee-b0d7-959819b02e9b MGI C3N-01419.WXS.N.hg38 C3N-01419 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7bad8534-983e-4be5-95ac-1b2c6a264267/8541ee06-47ca-4632-af45-dcf0ae9e50a2_wxs_gdc_realn.bam 22949472162 BAM hg38 7bad8534-983e-4be5-95ac-1b2c6a264267 MGI C3N-01419.WXS.T.hg38 C3N-01419 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fd2a837e-1888-4a62-b3f6-0c460ddb6660/b6f5e659-0d84-4f62-b599-914804ce42fb_wxs_gdc_realn.bam 31152710196 BAM hg38 fd2a837e-1888-4a62-b3f6-0c460ddb6660 MGI +C3N-01488.WGS.N.hg38 C3N-01488 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//87bce221-0796-41d0-bc03-2a03a762dd4a/8d3645e3-7f42-4816-8bb0-7cdcd9612242_wgs_gdc_realn.bam 103681430429 BAM hg38 87bce221-0796-41d0-bc03-2a03a762dd4a MGI C3N-01488.WXS.A.hg38 C3N-01488 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a4aecdb9-8acd-400e-8f80-779a7e5ef030/148d9024-68ee-4502-aef0-f8debe1caf14_wxs_gdc_realn.bam 50431601513 BAM hg38 a4aecdb9-8acd-400e-8f80-779a7e5ef030 MGI C3N-01488.WXS.N.hg38 C3N-01488 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/74c4ed65-5d3c-47d2-acde-3de56c7cd361/8d3645e3-7f42-4816-8bb0-7cdcd9612242_wxs_gdc_realn.bam 61160136987 BAM hg38 74c4ed65-5d3c-47d2-acde-3de56c7cd361 MGI C3N-01488.WXS.T.hg38 C3N-01488 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7e8c2099-ed79-4b7c-aa3d-f29c798b5296/04be411c-0dbb-46fc-a856-6657032723ab_wxs_gdc_realn.bam 44846579599 BAM hg38 7e8c2099-ed79-4b7c-aa3d-f29c798b5296 MGI +C3N-01489.WGS.N.hg38 C3N-01489 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//3be59a0e-af84-46ed-93cc-bcbf78120232/109c49c2-5da7-479e-ae3e-2faf07ae9244_wgs_gdc_realn.bam 90711217036 BAM hg38 3be59a0e-af84-46ed-93cc-bcbf78120232 MGI C3N-01489.WXS.A.hg38 C3N-01489 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ac712c08-c794-4736-ad32-63782443293d/9803ad5a-3b06-433f-95eb-f64b5e54717a_wxs_gdc_realn.bam 61577224753 BAM hg38 ac712c08-c794-4736-ad32-63782443293d MGI C3N-01489.WXS.N.hg38 C3N-01489 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c5a6d394-659c-43cf-8b4f-e7d637d4430e/109c49c2-5da7-479e-ae3e-2faf07ae9244_wxs_gdc_realn.bam 52853972717 BAM hg38 c5a6d394-659c-43cf-8b4f-e7d637d4430e MGI C3N-01489.WXS.T.hg38 C3N-01489 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/78b86af9-8dec-45da-b00f-211f7ac8c5e2/430ae4b9-2dbc-4a3c-a397-2baf354b13a5_wxs_gdc_realn.bam 37205601233 BAM hg38 78b86af9-8dec-45da-b00f-211f7ac8c5e2 MGI @@ -2695,6 +2845,7 @@ C3N-01766.WXS.T.hg38 C3N-01766 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/so C3N-01798.RNA-Seq.genomic.T.hg38 C3N-01798 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7f6d7753-4e05-4c37-8559-27f451711f29/ea4e4620-f51f-4725-bc5e-1fd95b55f774.rna_seq.genomic.gdc_realn.bam 9123797625 BAM hg38 7f6d7753-4e05-4c37-8559-27f451711f29 MGI C3N-01798.WXS.N.hg38 C3N-01798 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f9976b08-ef67-4a39-95ad-5c5a47a4ab4a/3fe573bd-7595-4c87-8006-ae55bfb46f6d_wxs_gdc_realn.bam 32396041287 BAM hg38 f9976b08-ef67-4a39-95ad-5c5a47a4ab4a MGI C3N-01798.WXS.T.hg38 C3N-01798 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d8d603aa-6b17-4e01-8b38-78cfb3047118/6a86b0fc-bb6a-4dca-9e8c-32aa9d36e020_wxs_gdc_realn.bam 27884846124 BAM hg38 d8d603aa-6b17-4e01-8b38-78cfb3047118 MGI +C3N-01799.WGS.N.hg38 C3N-01799 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a01696bd-4e49-45a2-80ae-7382ea01ac28/680fb7ef-3c8a-4c38-9218-50fba1f412a1_wgs_gdc_realn.bam 87494110206 BAM hg38 a01696bd-4e49-45a2-80ae-7382ea01ac28 MGI C3N-01799.WXS.A.hg38 C3N-01799 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/55b8ca66-dddb-4a1b-8645-4bad0f9b963c/ae11e403-c9c4-48e5-b4f0-ad6495db67cf_wxs_gdc_realn.bam 49796966179 BAM hg38 55b8ca66-dddb-4a1b-8645-4bad0f9b963c MGI C3N-01799.WXS.N.hg38 C3N-01799 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1dea8e0f-ecf3-48a8-938a-356eaeb0bf76/680fb7ef-3c8a-4c38-9218-50fba1f412a1_wxs_gdc_realn.bam 38756308494 BAM hg38 1dea8e0f-ecf3-48a8-938a-356eaeb0bf76 MGI C3N-01799.WXS.T.hg38 C3N-01799 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ea3614f9-cb20-412e-8029-564d1904fbf2/51034358-c855-496f-96f4-28b8ecad1da1_wxs_gdc_realn.bam 55137442882 BAM hg38 ea3614f9-cb20-412e-8029-564d1904fbf2 MGI @@ -2720,6 +2871,7 @@ C3N-01818.WXS.N.hg38 C3N-01818 GBM WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-d C3N-01818.WXS.T.hg38 C3N-01818 GBM WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4da3c9fd-7357-4d0f-8d0c-10c9e67f06fc/f9340864-be80-405e-a3a3-e0b123762976_wxs_gdc_realn.bam 42399077248 BAM hg38 4da3c9fd-7357-4d0f-8d0c-10c9e67f06fc MGI C3N-01821.WXS.N.hg38 C3N-01821 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2f14427e-dbcf-4402-9995-ef9bf5cd5989/eef72e7e-aa67-428b-a43f-a7d6dd477c24_wxs_gdc_realn.bam 40485169834 BAM hg38 2f14427e-dbcf-4402-9995-ef9bf5cd5989 MGI C3N-01821.WXS.T.hg38 C3N-01821 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/5ccd6919-dfe3-4b41-b80b-629b1d91b264/b6fa685c-2f54-4665-b7b2-2c9b9186db2c_wxs_gdc_realn.bam 37768979843 BAM hg38 5ccd6919-dfe3-4b41-b80b-629b1d91b264 MGI +C3N-01823.WGS.N.hg38 C3N-01823 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//59fd9c47-a049-4483-90bf-3650711651ee/7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wgs_gdc_realn.bam 89541195809 BAM hg38 59fd9c47-a049-4483-90bf-3650711651ee MGI C3N-01823.WXS.A.hg38 C3N-01823 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ae1ed438-07f1-44aa-9690-121cfdb635e9/ee86383b-00b4-482e-b536-f27a462cf22d_wxs_gdc_realn.bam 46062396631 BAM hg38 ae1ed438-07f1-44aa-9690-121cfdb635e9 MGI C3N-01823.WXS.N.hg38 C3N-01823 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a59668f0-be1f-4eef-ac04-16e2a8d48d5f/7efb323f-2ab8-4f8b-b2c3-6148a5ccdd75_wxs_gdc_realn.bam 35435908121 BAM hg38 a59668f0-be1f-4eef-ac04-16e2a8d48d5f MGI C3N-01823.WXS.T.hg38 C3N-01823 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4041925d-db9d-4daf-85da-8170f8864174/ff551e4f-c56a-486e-9b6d-9edcf85fffbb_wxs_gdc_realn.bam 59887110671 BAM hg38 4041925d-db9d-4daf-85da-8170f8864174 MGI @@ -2732,10 +2884,12 @@ C3N-01828.WXS.T.hg38 C3N-01828 CCRCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC C3N-01830.WXS.A.hg38 C3N-01830 UCEC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/0043084a-5de1-41fe-bb22-af0b2223e197/d2f91b7f-3ba9-4f92-9999-e34aaf39e8b6_wxs_gdc_realn.bam 54098728240 BAM hg38 0043084a-5de1-41fe-bb22-af0b2223e197 MGI C3N-01830.WXS.N.hg38 C3N-01830 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/48298649-34ec-4158-80c6-76111209b23b/49c80b42-7539-4e7d-9a14-4f32f9a595e0_wxs_gdc_realn.bam 50496991656 BAM hg38 48298649-34ec-4158-80c6-76111209b23b MGI C3N-01830.WXS.T.hg38 C3N-01830 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e335589e-a5c6-4acb-9689-978c6b3ef3f1/7309ed28-37a6-470a-b971-4b1981c7bd9b_wxs_gdc_realn.bam 38900837272 BAM hg38 e335589e-a5c6-4acb-9689-978c6b3ef3f1 MGI +C3N-01842.WGS.N.hg38 C3N-01842 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ca974bf0-2aef-4f42-9604-fa42b3d13105/20dd5461-6505-48e7-b3d5-39e1d77be2de_wgs_gdc_realn.bam 113480017444 BAM hg38 ca974bf0-2aef-4f42-9604-fa42b3d13105 MGI C3N-01842.WXS.N.hg38 C3N-01842 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/39dc8e97-a4b9-4497-813f-24b2ac89fb3d/20dd5461-6505-48e7-b3d5-39e1d77be2de_wxs_gdc_realn.bam 58316986065 BAM hg38 39dc8e97-a4b9-4497-813f-24b2ac89fb3d MGI C3N-01842.WXS.T.hg38 C3N-01842 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/413290a2-7da6-4efe-856f-db41f9307ad6/f370ca5a-c17b-4e60-b6b3-f0aee3f5b1c9_wxs_gdc_realn.bam 60011309826 BAM hg38 413290a2-7da6-4efe-856f-db41f9307ad6 MGI C3N-01843.WXS.N.hg38 C3N-01843 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2c0022ef-c48f-48b0-9409-74cee5cd7fc1/2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wxs_gdc_realn.bam 41588850052 BAM hg38 2c0022ef-c48f-48b0-9409-74cee5cd7fc1 MGI C3N-01843.WXS.T.hg38 C3N-01843 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3519a923-e879-45d2-bfc1-1d76f173d915/982621a1-4bca-4b1e-ae32-15d4b9b860b6_wxs_gdc_realn.bam 62083337377 BAM hg38 3519a923-e879-45d2-bfc1-1d76f173d915 MGI +C3N-01846.WGS.N.hg38 C3N-01846 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//67b1acc9-4e47-4745-8e98-4261b6c3669a/b47a302c-4e31-4c79-85e3-ead148c0237b_wgs_gdc_realn.bam 90343628884 BAM hg38 67b1acc9-4e47-4745-8e98-4261b6c3669a MGI C3N-01846.WXS.A.hg38 C3N-01846 LSCC WXS tissue_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a4b8536d-66e4-4716-803e-0c22ddee814a/2cb0e8ec-b8a9-4f65-aeb8-3a98d8889f53_wxs_gdc_realn.bam 35525792099 BAM hg38 a4b8536d-66e4-4716-803e-0c22ddee814a MGI C3N-01846.WXS.N.hg38 C3N-01846 LSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6fd023ee-ac38-43b3-a65a-8b56f0a445ac/b47a302c-4e31-4c79-85e3-ead148c0237b_wxs_gdc_realn.bam 38428641055 BAM hg38 6fd023ee-ac38-43b3-a65a-8b56f0a445ac MGI C3N-01846.WXS.T.hg38 C3N-01846 LSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/079acb9d-120b-4d1a-a112-711f74112aee/e7aeabbd-a8b9-4804-a19d-a02b58cb27d7_wxs_gdc_realn.bam 40252560339 BAM hg38 079acb9d-120b-4d1a-a112-711f74112aee MGI @@ -2784,8 +2938,10 @@ C3N-01879.WXS.N.hg38 C3N-01879 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyc C3N-01879.WXS.T.hg38 C3N-01879 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/bcc27383-e684-4967-933c-995e65a2d538/17897397-8ef1-4b7e-a4be-62724d409003_wxs_gdc_realn.bam 42273615193 BAM hg38 bcc27383-e684-4967-933c-995e65a2d538 MGI C3N-01880.WXS.N.hg38 C3N-01880 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/1a736b16-cc90-4dec-8910-d9f06356bd35/1f1edace-64cf-49f2-b523-58f4a1ff2a04_wxs_gdc_realn.bam 33842256834 BAM hg38 1a736b16-cc90-4dec-8910-d9f06356bd35 MGI C3N-01880.WXS.T.hg38 C3N-01880 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/9577e58a-e24c-4b96-8965-868649eb595c/e9c2219d-e9bc-4ccd-a5f1-34d361863681_wxs_gdc_realn.bam 32771880228 BAM hg38 9577e58a-e24c-4b96-8965-868649eb595c MGI +C3N-01892.WGS.N.hg38 C3N-01892 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//86222a6d-e2a9-4183-bb73-a518a823b924/9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wgs_gdc_realn.bam 88208725165 BAM hg38 86222a6d-e2a9-4183-bb73-a518a823b924 MGI C3N-01892.WXS.N.hg38 C3N-01892 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5a24a636-aa48-4983-a815-0802da4e052e/9936e1e5-f01a-4b80-b2e9-13f1ce3a1bfe_wxs_gdc_realn.bam 44084485135 BAM hg38 5a24a636-aa48-4983-a815-0802da4e052e MGI C3N-01892.WXS.T.hg38 C3N-01892 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3f9bf1d4-7102-4b82-8033-1f2b3835f8b2/262aaf3d-8ee6-4cff-bce8-a0bbaf248d1e_wxs_gdc_realn.bam 32455152093 BAM hg38 3f9bf1d4-7102-4b82-8033-1f2b3835f8b2 MGI +C3N-01893.WGS.N.hg38 C3N-01893 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//945bd9e8-b7a0-4e0b-a1de-9ca9121057b6/616d5c12-0f0b-4730-a075-3f376fee9a14_wgs_gdc_realn.bam 84790500558 BAM hg38 945bd9e8-b7a0-4e0b-a1de-9ca9121057b6 MGI C3N-01893.WXS.N.hg38 C3N-01893 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/125eae90-6a68-4939-b71c-8aefb6447a24/616d5c12-0f0b-4730-a075-3f376fee9a14_wxs_gdc_realn.bam 35964101417 BAM hg38 125eae90-6a68-4939-b71c-8aefb6447a24 MGI C3N-01893.WXS.T.hg38 C3N-01893 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/26d49884-64e6-44ce-a7c5-043c28417454/b3ded0d8-e9fe-405b-aba1-07bbb123e5c1_wxs_gdc_realn.bam 32644844364 BAM hg38 26d49884-64e6-44ce-a7c5-043c28417454 MGI C3N-01897.WXS.N.hg38 C3N-01897 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9eacaf4b-96a4-4053-b3cb-c725c77a347b/3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wxs_gdc_realn.bam 30186380588 BAM hg38 9eacaf4b-96a4-4053-b3cb-c725c77a347b MGI @@ -2821,12 +2977,15 @@ C3N-01997.WXS.T.hg38.high_cov C3N-01997 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3 C3N-01998.WXS.A.hg38 C3N-01998 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c2646db1-eff9-4690-aaaa-76a6405cae58/fd6d58be-dde5-48a6-bd15-4fd540911042_wxs_gdc_realn.bam 33715823903 BAM hg38 c2646db1-eff9-4690-aaaa-76a6405cae58 MGI C3N-01998.WXS.N.hg38 C3N-01998 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b1d90016-cc6d-439e-be14-55f718270eab/55b09b6d-156e-41c5-89a3-dcf2239933d7_wxs_gdc_realn.bam 72454088432 BAM hg38 b1d90016-cc6d-439e-be14-55f718270eab MGI C3N-01998.WXS.T.hg38.high_cov C3N-01998 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/60513f97-926b-4963-bae7-8c80e46a2a8c/1a805149-0df5-4531-9563-71e4c703bcdc_wxs_gdc_realn.bam 79902175680 BAM hg38 60513f97-926b-4963-bae7-8c80e46a2a8c MGI +C3N-02000.WGS.N.hg38 C3N-02000 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//bf014c48-3581-4a84-8722-b035e7a9d738/2e314885-1454-4783-a831-75870cf75983_wgs_gdc_realn.bam 86461784632 BAM hg38 bf014c48-3581-4a84-8722-b035e7a9d738 MGI C3N-02000.WXS.A.hg38 C3N-02000 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/802eca50-b209-47f1-a139-d0dd7abb3720/e51fcd20-6fde-467e-8a41-07aefd567779_wxs_gdc_realn.bam 44937991320 BAM hg38 802eca50-b209-47f1-a139-d0dd7abb3720 MGI C3N-02000.WXS.N.hg38 C3N-02000 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/295550ef-b363-468c-9df0-91c6b8cb9fdd/2e314885-1454-4783-a831-75870cf75983_wxs_gdc_realn.bam 34112917365 BAM hg38 295550ef-b363-468c-9df0-91c6b8cb9fdd MGI C3N-02000.WXS.T.hg38 C3N-02000 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/30fa5120-cf28-4153-8d7c-e57b00adcb9f/1343972c-60e6-47e7-b70e-d19bd6d3f653_wxs_gdc_realn.bam 29360561709 BAM hg38 30fa5120-cf28-4153-8d7c-e57b00adcb9f MGI +C3N-02002.WGS.N.hg38 C3N-02002 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//471e70c6-51e8-4100-a63b-63a3f6a5a678/202db50a-4134-448c-9481-ced3fd4d4dc2_wgs_gdc_realn.bam 85547622583 BAM hg38 471e70c6-51e8-4100-a63b-63a3f6a5a678 MGI C3N-02002.WXS.A.hg38 C3N-02002 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/437e9d6f-dc7d-4bcf-98fa-3419777978ce/ee0f0256-ed6f-447e-9ad8-1060fb36e161_wxs_gdc_realn.bam 35117796713 BAM hg38 437e9d6f-dc7d-4bcf-98fa-3419777978ce MGI C3N-02002.WXS.N.hg38 C3N-02002 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/006e39b0-96ca-4339-a510-96b6005eeae8/202db50a-4134-448c-9481-ced3fd4d4dc2_wxs_gdc_realn.bam 43971341873 BAM hg38 006e39b0-96ca-4339-a510-96b6005eeae8 MGI C3N-02002.WXS.T.hg38 C3N-02002 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8c10fc2f-eeb0-44fb-b18f-e42c4f022697/1abf55ca-df9a-4ac4-8c33-510b39936273_wxs_gdc_realn.bam 30770328088 BAM hg38 8c10fc2f-eeb0-44fb-b18f-e42c4f022697 MGI +C3N-02003.WGS.N.hg38 C3N-02003 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//6e5f732a-d376-4bb1-a4b1-6c958e6bcb1a/7ca71ce5-b234-4709-8edc-669943e1e2dd_wgs_gdc_realn.bam 97397004399 BAM hg38 6e5f732a-d376-4bb1-a4b1-6c958e6bcb1a MGI C3N-02003.WXS.A.hg38 C3N-02003 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ab1ce893-3592-4958-b708-fabfa48af51c/31e6ec45-f44d-4d31-9b84-4b06716a284c_wxs_gdc_realn.bam 32001263995 BAM hg38 ab1ce893-3592-4958-b708-fabfa48af51c MGI C3N-02003.WXS.N.hg38 C3N-02003 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6c5a9ab5-1366-4be1-8e99-25ff33186bc2/7ca71ce5-b234-4709-8edc-669943e1e2dd_wxs_gdc_realn.bam 34843220411 BAM hg38 6c5a9ab5-1366-4be1-8e99-25ff33186bc2 MGI C3N-02003.WXS.T.hg38 C3N-02003 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1fb9c68e-3526-421c-bbd8-5a86ec741f6b/ef408498-3384-4707-9dc5-972baec87b00_wxs_gdc_realn.bam 36401003171 BAM hg38 1fb9c68e-3526-421c-bbd8-5a86ec741f6b MGI @@ -2869,6 +3028,7 @@ C3N-02063.WXS.T.hg38 C3N-02063 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3N-02066.WXS.A.hg38 C3N-02066 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e18467f1-0748-4762-92cd-e3f57e3451d4/fb8b7ff5-89a3-4104-ba8c-ddc1ec7f4476_wxs_gdc_realn.bam 37974421261 BAM hg38 e18467f1-0748-4762-92cd-e3f57e3451d4 MGI C3N-02066.WXS.N.hg38 C3N-02066 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ea6d400f-2749-4388-b347-256d69e74e7e/283ad697-3688-4159-a0b7-8a12d6005948_wxs_gdc_realn.bam 36983883595 BAM hg38 ea6d400f-2749-4388-b347-256d69e74e7e MGI C3N-02066.WXS.T.hg38 C3N-02066 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c782a79f-43aa-4b06-94cb-7e23f1cdaae6/10a9c495-e23e-4518-8e67-121fecde9e0c_wxs_gdc_realn.bam 29003761446 BAM hg38 c782a79f-43aa-4b06-94cb-7e23f1cdaae6 MGI +C3N-02067.WGS.N.hg38 C3N-02067 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//48a82c5e-f542-4065-9c59-0867897199dd/f2a460fb-b9c4-4416-8eba-43f2262d9f69_wgs_gdc_realn.bam 77729417894 BAM hg38 48a82c5e-f542-4065-9c59-0867897199dd MGI C3N-02067.WXS.A.hg38 C3N-02067 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c0bbd01b-1223-463d-a3cf-ded71121573f/fe44b42b-a442-442a-8306-17cb7c09becd_wxs_gdc_realn.bam 47376603238 BAM hg38 c0bbd01b-1223-463d-a3cf-ded71121573f MGI C3N-02067.WXS.N.hg38 C3N-02067 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7b87637e-52bf-4ded-82a1-9c511c954953/f2a460fb-b9c4-4416-8eba-43f2262d9f69_wxs_gdc_realn.bam 33987543561 BAM hg38 7b87637e-52bf-4ded-82a1-9c511c954953 MGI C3N-02067.WXS.T.hg38 C3N-02067 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/63f87f84-4e24-44b4-9cf8-91a9fe5e3910/93c2237d-c12e-435c-a1b0-97f6c59cccff_wxs_gdc_realn.bam 45467255428 BAM hg38 63f87f84-4e24-44b4-9cf8-91a9fe5e3910 MGI @@ -2886,12 +3046,14 @@ C3N-02084.WXS.N.hg38 C3N-02084 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3 C3N-02084.WXS.T.hg38 C3N-02084 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/780580e0-d3d4-4312-8dec-a7c0eac6382d/fc7d756e-eca7-46e7-af28-e0987dfcffec_wxs_gdc_realn.bam 32135836258 BAM hg38 780580e0-d3d4-4312-8dec-a7c0eac6382d MGI C3N-02085.WXS.N.hg38 C3N-02085 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/64836817-1ec8-441f-9281-8040ac53fcfe/1daa8e7e-a212-4407-9687-f589a8ad6680_wxs_gdc_realn.bam 23021032827 BAM hg38 64836817-1ec8-441f-9281-8040ac53fcfe MGI C3N-02085.WXS.T.hg38 C3N-02085 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bbf0b425-1023-4713-836e-96b073e45c2b/ef04fd99-79e1-437a-9843-53dec4a298f0_wxs_gdc_realn.bam 29374420898 BAM hg38 bbf0b425-1023-4713-836e-96b073e45c2b MGI +C3N-02087.WGS.N.hg38 C3N-02087 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4f91d76c-add3-4844-9405-eaf7825974d5/0bef2750-db0c-421b-b25c-07c759f7c0d1_wgs_gdc_realn.bam 79932273483 BAM hg38 4f91d76c-add3-4844-9405-eaf7825974d5 MGI C3N-02087.WXS.A.hg38 C3N-02087 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f54a73b2-0f9f-49e4-b851-ba379b2acd60/ccf3ea6d-9226-4bee-b2fc-aa707444286e_wxs_gdc_realn.bam 53429249476 BAM hg38 f54a73b2-0f9f-49e4-b851-ba379b2acd60 MGI C3N-02087.WXS.N.hg38 C3N-02087 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f70ab7b9-7cdd-4d6a-bf94-2aa639167281/0bef2750-db0c-421b-b25c-07c759f7c0d1_wxs_gdc_realn.bam 34244104672 BAM hg38 f70ab7b9-7cdd-4d6a-bf94-2aa639167281 MGI C3N-02087.WXS.T.hg38 C3N-02087 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff8cb924-ad16-4dd2-862d-c2b720f48b9b/ac4cd440-fb64-46db-9050-79c687dc37c8_wxs_gdc_realn.bam 37155579105 BAM hg38 ff8cb924-ad16-4dd2-862d-c2b720f48b9b MGI C3N-02088.WXS.A.hg38 C3N-02088 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4e031bfc-0122-4f9d-81cd-27869583960d/56eed8b7-85b5-40b4-906d-a6bad5a33ce9_wxs_gdc_realn.bam 71728409886 BAM hg38 4e031bfc-0122-4f9d-81cd-27869583960d MGI C3N-02088.WXS.N.hg38 C3N-02088 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/aa4e5b5f-1b25-45f9-ae87-cfd762d9d03a/b6ace695-9412-4adc-956d-2ef198d638fe_wxs_gdc_realn.bam 36154225292 BAM hg38 aa4e5b5f-1b25-45f9-ae87-cfd762d9d03a MGI C3N-02088.WXS.T.hg38 C3N-02088 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d766e7d6-51a3-4b5c-8cd1-956e4119d2a7/2c104e43-5d4a-4308-abe5-804e815b6d78_wxs_gdc_realn.bam 38383949514 BAM hg38 d766e7d6-51a3-4b5c-8cd1-956e4119d2a7 MGI +C3N-02089.WGS.N.hg38 C3N-02089 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//cf05d1d8-8660-49bc-82b2-e742eb55e15f/b9059e86-abad-4281-9c78-366b62c92cc1_wgs_gdc_realn.bam 83290204477 BAM hg38 cf05d1d8-8660-49bc-82b2-e742eb55e15f MGI C3N-02089.WXS.A.hg38 C3N-02089 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d2cd63c4-3df2-46ad-aef0-b9031ad2d0bd/979e5009-77c3-42ac-bda6-187ef5352551_wxs_gdc_realn.bam 37945356644 BAM hg38 d2cd63c4-3df2-46ad-aef0-b9031ad2d0bd MGI C3N-02089.WXS.N.hg38 C3N-02089 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9efddfc1-9d19-4892-a8ee-21bd626507cf/b9059e86-abad-4281-9c78-366b62c92cc1_wxs_gdc_realn.bam 39843032408 BAM hg38 9efddfc1-9d19-4892-a8ee-21bd626507cf MGI C3N-02089.WXS.T.hg38 C3N-02089 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/12a437cd-b438-4fdc-b7f5-33b0b3fd8756/84900de9-1209-4719-bcc0-f155224277c3_wxs_gdc_realn.bam 40438793522 BAM hg38 12a437cd-b438-4fdc-b7f5-33b0b3fd8756 MGI @@ -2910,12 +3072,14 @@ C3N-02143.WXS.T.hg38 C3N-02143 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3N-02144.WXS.A.hg38 C3N-02144 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b8d48d6d-0156-4128-ab0f-81645f7b9047/a12610f8-08ef-4ccf-8867-0b3e81a115cf_wxs_gdc_realn.bam 25998825089 BAM hg38 b8d48d6d-0156-4128-ab0f-81645f7b9047 MGI C3N-02144.WXS.N.hg38 C3N-02144 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4bd492f5-2f8b-440e-ab46-f4fcc48454ab/10f4d713-27f7-4028-9cbe-7d7c13bc68f9_wxs_gdc_realn.bam 31982259877 BAM hg38 4bd492f5-2f8b-440e-ab46-f4fcc48454ab MGI C3N-02144.WXS.T.hg38 C3N-02144 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d91a24cf-44c0-4404-8274-42daf7c8de82/7295c9c9-2c79-4369-8516-8193188df19a_wxs_gdc_realn.bam 30414668070 BAM hg38 d91a24cf-44c0-4404-8274-42daf7c8de82 MGI +C3N-02145.WGS.N.hg38 C3N-02145 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ee798bc4-720d-4367-ac5c-9e22ac0b1d0b/62430f39-b7bd-4c7a-8ff1-515876e9a2c0_wgs_gdc_realn.bam 87369376161 BAM hg38 ee798bc4-720d-4367-ac5c-9e22ac0b1d0b MGI C3N-02145.WXS.A.hg38 C3N-02145 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/804c6f26-d695-417e-b423-87f56ccabbbe/132717f2-7e89-446b-a32c-6d186aeabd07_wxs_gdc_realn.bam 43890705503 BAM hg38 804c6f26-d695-417e-b423-87f56ccabbbe MGI C3N-02145.WXS.N.hg38 C3N-02145 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/08f29362-1f2b-4678-839d-cebfa79689a7/62430f39-b7bd-4c7a-8ff1-515876e9a2c0_wxs_gdc_realn.bam 68384859286 BAM hg38 08f29362-1f2b-4678-839d-cebfa79689a7 MGI C3N-02145.WXS.T.hg38 C3N-02145 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cd82f96e-95e3-4cb7-84f5-680e9badc216/3c404945-7719-486d-9cdc-b47d6aa903c4_wxs_gdc_realn.bam 47759048627 BAM hg38 cd82f96e-95e3-4cb7-84f5-680e9badc216 MGI C3N-02146.WXS.A.hg38 C3N-02146 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/edf762ae-0e65-4e86-a2b0-f2a654ee0ec7/646adfc3-9a79-48bd-b65d-b7e3b44901e7_wxs_gdc_realn.bam 34405378315 BAM hg38 edf762ae-0e65-4e86-a2b0-f2a654ee0ec7 MGI C3N-02146.WXS.N.hg38 C3N-02146 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4cca5445-c281-4e6e-8d38-558b87dcf955/ce7fd37a-df61-460a-b503-62afc4e68aed_wxs_gdc_realn.bam 41321630954 BAM hg38 4cca5445-c281-4e6e-8d38-558b87dcf955 MGI C3N-02146.WXS.T.hg38 C3N-02146 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ba8734f5-13d2-4bb2-8fb1-4ab756fa10fd/934812b3-c6a6-49a9-bd08-1c3d5fce1b5c_wxs_gdc_realn.bam 41921689256 BAM hg38 ba8734f5-13d2-4bb2-8fb1-4ab756fa10fd MGI +C3N-02149.WGS.N.hg38 C3N-02149 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//126eff70-4fdd-4cc0-87bd-c027c1aa6efa/a53c962e-f431-4d44-88cd-4e8e3266df3f_wgs_gdc_realn.bam 106554081386 BAM hg38 126eff70-4fdd-4cc0-87bd-c027c1aa6efa MGI C3N-02149.WXS.A.hg38 C3N-02149 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b464876e-29f1-4830-b7d8-e9070f976551/85bee5d7-ca2c-4eab-b4c7-672afbd8ef7e_wxs_gdc_realn.bam 47384250047 BAM hg38 b464876e-29f1-4830-b7d8-e9070f976551 MGI C3N-02149.WXS.N.hg38 C3N-02149 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5f9fee87-fcca-4efd-8730-ff6038ce26aa/a53c962e-f431-4d44-88cd-4e8e3266df3f_wxs_gdc_realn.bam 60509033291 BAM hg38 5f9fee87-fcca-4efd-8730-ff6038ce26aa MGI C3N-02149.WXS.T.hg38 C3N-02149 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b7a376a3-c0b0-4f66-bd65-6c6b2a369cfc/b9125a98-59f8-4952-b25f-ffeba3e29a57_wxs_gdc_realn.bam 48677763794 BAM hg38 b7a376a3-c0b0-4f66-bd65-6c6b2a369cfc MGI @@ -2928,9 +3092,11 @@ C3N-02152.WXS.T.hg38 C3N-02152 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3N-02153.WXS.A.hg38 C3N-02153 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2c4f98cb-4382-4bd0-ab34-5b93f680d54e/6651d0de-376c-4aee-a9bf-c3e4f3133498_wxs_gdc_realn.bam 39077990533 BAM hg38 2c4f98cb-4382-4bd0-ab34-5b93f680d54e MGI C3N-02153.WXS.N.hg38 C3N-02153 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/608118ab-c03d-4616-bed0-c0f72cea79e7/23c2a3ed-1037-4fc5-b178-d815bb0d2c8c_wxs_gdc_realn.bam 54359204056 BAM hg38 608118ab-c03d-4616-bed0-c0f72cea79e7 MGI C3N-02153.WXS.T.hg38 C3N-02153 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f8cd3f86-e4aa-45a1-9958-d1f84ed28795/209d6415-2a61-4428-abba-6774dbaabd97_wxs_gdc_realn.bam 62552051041 BAM hg38 f8cd3f86-e4aa-45a1-9958-d1f84ed28795 MGI +C3N-02155.WGS.N.hg38 C3N-02155 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//0cc62591-f95e-45ef-bbea-eab30a0d7770/d7a1f593-71f7-4f1c-be1e-23a63fd78c5d_wgs_gdc_realn.bam 93200654909 BAM hg38 0cc62591-f95e-45ef-bbea-eab30a0d7770 MGI C3N-02155.WXS.A.hg38 C3N-02155 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/caded12b-bb32-4eea-848b-81ad0ffb495b/ed19b4b1-22a5-412b-bb6e-b00d0f084006_wxs_gdc_realn.bam 49569792896 BAM hg38 caded12b-bb32-4eea-848b-81ad0ffb495b MGI C3N-02155.WXS.N.hg38 C3N-02155 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/40a3338b-9fb7-4e8b-8837-16607de5f635/d7a1f593-71f7-4f1c-be1e-23a63fd78c5d_wxs_gdc_realn.bam 53809996765 BAM hg38 40a3338b-9fb7-4e8b-8837-16607de5f635 MGI C3N-02155.WXS.T.hg38 C3N-02155 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/243e3716-55b5-4322-817c-390639f79182/10cc6e4f-85a1-4d9b-a238-73cbb21ad04b_wxs_gdc_realn.bam 74001367606 BAM hg38 243e3716-55b5-4322-817c-390639f79182 MGI +C3N-02158.WGS.N.hg38 C3N-02158 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//aa23a83a-4678-4eba-80d3-bb3103cde067/82c5ffdb-1610-46ff-ad84-2121cdef55e6_wgs_gdc_realn.bam 82583673686 BAM hg38 aa23a83a-4678-4eba-80d3-bb3103cde067 MGI C3N-02158.WXS.A.hg38 C3N-02158 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/29eddf52-f350-41fe-b3ff-910fda1640a4/000d033c-72ae-4b2b-8b43-a8164c33f10c_wxs_gdc_realn.bam 41461064285 BAM hg38 29eddf52-f350-41fe-b3ff-910fda1640a4 MGI C3N-02158.WXS.N.hg38 C3N-02158 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c67d4ccc-db44-4a28-850d-a4574f4de5d6/82c5ffdb-1610-46ff-ad84-2121cdef55e6_wxs_gdc_realn.bam 33485647619 BAM hg38 c67d4ccc-db44-4a28-850d-a4574f4de5d6 MGI C3N-02158.WXS.T.hg38 C3N-02158 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c8136f3c-2089-42f4-8fbf-5f38df538ec6/a12d567c-c0f4-4ff6-90d6-172f50402e90_wxs_gdc_realn.bam 46354989653 BAM hg38 c8136f3c-2089-42f4-8fbf-5f38df538ec6 MGI @@ -2985,6 +3151,7 @@ C3N-02248.WXS.N.hg38 C3N-02248 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3 C3N-02248.WXS.T.hg38 C3N-02248 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d9cb4944-4535-4223-8542-b0f282b339f0/6c378684-83f3-41ea-988b-68563579d68a_wxs_gdc_realn.bam 35501781737 BAM hg38 d9cb4944-4535-4223-8542-b0f282b339f0 MGI C3N-02249.WXS.N.hg38 C3N-02249 UCEC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/a3004536-7812-4441-87b4-72715964efe0/5df2768a-0e96-490f-bff2-48589110108f_wxs_gdc_realn.bam 26107999631 BAM hg38 a3004536-7812-4441-87b4-72715964efe0 MGI C3N-02249.WXS.T.hg38 C3N-02249 UCEC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/14bbea5c-5660-426a-b291-7990840adcd5/905ada72-761f-4a71-89bd-5dcabab30043_wxs_gdc_realn.bam 40715468971 BAM hg38 14bbea5c-5660-426a-b291-7990840adcd5 MGI +C3N-02252.WGS.N.hg38 C3N-02252 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b26fa50b-ea4b-4324-8212-9c001c8e3b95/c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wgs_gdc_realn.bam 84828954077 BAM hg38 b26fa50b-ea4b-4324-8212-9c001c8e3b95 MGI C3N-02252.WXS.N.hg38 C3N-02252 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/66ed598c-f43d-44a5-b496-af4330c65856/c76b462a-1b74-4cbc-aa4f-18ba1c67ddee_wxs_gdc_realn.bam 24342884232 BAM hg38 66ed598c-f43d-44a5-b496-af4330c65856 MGI C3N-02252.WXS.T.hg38 C3N-02252 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6619382f-fd6d-40f0-9609-dd57af52995f/ebfc2cd0-54b0-4dba-afd4-a9b59f7e5706_wxs_gdc_realn.bam 40206707767 BAM hg38 6619382f-fd6d-40f0-9609-dd57af52995f MGI C3N-02253.WXS.A.hg38 C3N-02253 UCEC WXS tissue_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/3b64b62d-21d2-4838-8e49-ed01c6ec15a9/b48be8e6-8b97-4641-a7ca-c5ffc7a53f10_wxs_gdc_realn.bam 30453273156 BAM hg38 3b64b62d-21d2-4838-8e49-ed01c6ec15a9 MGI @@ -3024,16 +3191,21 @@ C3N-02281.WXS.T.hg38 C3N-02281 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3N-02282.WXS.A.hg38 C3N-02282 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/44a7b7c5-4665-4b51-bd37-ca5066733027/e5633f90-1c9a-42ef-bacc-7e43629d51ba_wxs_gdc_realn.bam 39402377534 BAM hg38 44a7b7c5-4665-4b51-bd37-ca5066733027 MGI C3N-02282.WXS.N.hg38 C3N-02282 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/91f15acd-1f52-47f3-8a16-3864586136fe/8b5a5693-cd27-4083-9581-3c748292040a_wxs_gdc_realn.bam 35160284684 BAM hg38 91f15acd-1f52-47f3-8a16-3864586136fe MGI C3N-02282.WXS.T.hg38 C3N-02282 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7fb26ec0-b1e4-4b21-8aae-83df9d82de46/a7ea82bc-eefc-4de3-9673-b023fd390c78_wxs_gdc_realn.bam 34061861003 BAM hg38 7fb26ec0-b1e4-4b21-8aae-83df9d82de46 MGI +C3N-02283.WGS.N.hg38 C3N-02283 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//02d030b5-5b7a-41c9-ba6e-12c6db1eb429/19aa271d-2103-4fad-a065-5301809f651f_wgs_gdc_realn.bam 82170772698 BAM hg38 02d030b5-5b7a-41c9-ba6e-12c6db1eb429 MGI C3N-02283.WXS.N.hg38 C3N-02283 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/af167ea3-342a-4fcd-8a84-580c91dd33f0/19aa271d-2103-4fad-a065-5301809f651f_wxs_gdc_realn.bam 33603537279 BAM hg38 af167ea3-342a-4fcd-8a84-580c91dd33f0 MGI C3N-02283.WXS.T.hg38 C3N-02283 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a225aefc-324c-43f5-884e-9725d8ca58e0/4f64e5de-5d18-4635-857d-0c3bbe4ded3e_wxs_gdc_realn.bam 37544949507 BAM hg38 a225aefc-324c-43f5-884e-9725d8ca58e0 MGI +C3N-02284.WGS.N.hg38 C3N-02284 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//34c364ee-f9e4-4e0e-8e9a-52de011021b4/c791c2be-5334-4d7b-9ab0-91a698b7efb9_wgs_gdc_realn.bam 100197693005 BAM hg38 34c364ee-f9e4-4e0e-8e9a-52de011021b4 MGI C3N-02284.WXS.N.hg38 C3N-02284 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/595c07fb-051b-4c2a-855b-3ae60dcf59fc/c791c2be-5334-4d7b-9ab0-91a698b7efb9_wxs_gdc_realn.bam 32164636479 BAM hg38 595c07fb-051b-4c2a-855b-3ae60dcf59fc MGI C3N-02284.WXS.T.hg38 C3N-02284 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1294fb93-7b37-499b-b572-70b1a6cfcf3e/240bbd6e-5410-4449-a9c1-85d5148ce48d_wxs_gdc_realn.bam 37619328887 BAM hg38 1294fb93-7b37-499b-b572-70b1a6cfcf3e MGI +C3N-02285.WGS.N.hg38 C3N-02285 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//317eb8b8-1298-4c4e-89c9-5bf24a885bc0/69286d3c-b11d-4671-84fb-50219bfa4a7d_wgs_gdc_realn.bam 78819208763 BAM hg38 317eb8b8-1298-4c4e-89c9-5bf24a885bc0 MGI C3N-02285.WXS.N.hg38 C3N-02285 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c2f3061e-edf4-488b-83fb-72037b2259b5/69286d3c-b11d-4671-84fb-50219bfa4a7d_wxs_gdc_realn.bam 38522042296 BAM hg38 c2f3061e-edf4-488b-83fb-72037b2259b5 MGI C3N-02285.WXS.T.hg38 C3N-02285 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7556f828-482b-42ca-a7ec-9d2a58b36567/bc40d70a-933b-4fab-8523-a5abcc82c6b3_wxs_gdc_realn.bam 29527626071 BAM hg38 7556f828-482b-42ca-a7ec-9d2a58b36567 MGI C3N-02286.WXS.N C3N-02286 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fb4d5bbb-2ccc-4536-8810-5b8c26966cc4/CPT0244820002.WholeExome.RP-1303.bam 24861070255 BAM hg19 fb4d5bbb-2ccc-4536-8810-5b8c26966cc4 MGI C3N-02286.WXS.T C3N-02286 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/eda81041-c710-4a34-820b-0ac80720e269/CPT0244760006.WholeExome.RP-1303.bam 22922615721 BAM hg19 eda81041-c710-4a34-820b-0ac80720e269 MGI +C3N-02288.WGS.N.hg38 C3N-02288 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//f257631d-13a7-4807-b1d6-663ef1a49a24/c7123429-3c8d-423a-9a61-67c733b83348_wgs_gdc_realn.bam 87640373571 BAM hg38 f257631d-13a7-4807-b1d6-663ef1a49a24 MGI C3N-02288.WXS.N.hg38 C3N-02288 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4c312282-97da-44e1-8846-29ce79da0f50/c7123429-3c8d-423a-9a61-67c733b83348_wxs_gdc_realn.bam 31185327883 BAM hg38 4c312282-97da-44e1-8846-29ce79da0f50 MGI C3N-02288.WXS.T.hg38 C3N-02288 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9dbdc003-0c3d-496a-80e7-294fc3d5accd/7f25c67f-5bde-4d63-908b-8eb7a373a396_wxs_gdc_realn.bam 38383363311 BAM hg38 9dbdc003-0c3d-496a-80e7-294fc3d5accd MGI +C3N-02289.WGS.N.hg38 C3N-02289 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//277cecf8-934f-4317-b124-1c1eea975962/d174d5b0-e1a6-4c90-9d07-707541183a9b_wgs_gdc_realn.bam 80974065111 BAM hg38 277cecf8-934f-4317-b124-1c1eea975962 MGI C3N-02289.WXS.N.hg38 C3N-02289 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/899a7f1c-1488-4359-99ed-7369191b8979/d174d5b0-e1a6-4c90-9d07-707541183a9b_wxs_gdc_realn.bam 40606121413 BAM hg38 899a7f1c-1488-4359-99ed-7369191b8979 MGI C3N-02289.WXS.T.hg38 C3N-02289 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/92db6b44-4d33-4e85-88fd-f84a30b6cb7c/45f472fc-d103-4071-935b-35f943d1b608_wxs_gdc_realn.bam 35860070447 BAM hg38 92db6b44-4d33-4e85-88fd-f84a30b6cb7c MGI C3N-02290.WXS.A.hg38 C3N-02290 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cc87aa40-2e4d-49b1-b6e5-22e222a3542c/871b29fb-3af5-4a09-abc0-f11504688d46_wxs_gdc_realn.bam 40756044421 BAM hg38 cc87aa40-2e4d-49b1-b6e5-22e222a3542c MGI @@ -3046,6 +3218,7 @@ C3N-02296.WXS.N.hg38 C3N-02296 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyc C3N-02296.WXS.T.hg38 C3N-02296 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/6e957dcc-be9b-43c6-bfab-bf86027c7bcf/868c6a57-64e0-450f-a151-139f5520286d_wxs_gdc_realn.bam 35065589363 BAM hg38 6e957dcc-be9b-43c6-bfab-bf86027c7bcf MGI C3N-02298.WXS.N.hg38 C3N-02298 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/816f16bc-4e6a-4cdd-a872-2a7204d4865e/349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wxs_gdc_realn.bam 34012491413 BAM hg38 816f16bc-4e6a-4cdd-a872-2a7204d4865e MGI C3N-02298.WXS.T.hg38 C3N-02298 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/9b01bb2d-5ace-474c-98ee-7e8ae40a26ac/93c0c350-e6ac-4b76-95fd-428c202de743_wxs_gdc_realn.bam 34422107369 BAM hg38 9b01bb2d-5ace-474c-98ee-7e8ae40a26ac MGI +C3N-02300.WGS.N.hg38 C3N-02300 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//156af5ca-43a0-4ed7-a4f0-f43b8fc3a486/b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wgs_gdc_realn.bam 88657058284 BAM hg38 156af5ca-43a0-4ed7-a4f0-f43b8fc3a486 MGI C3N-02300.WXS.N.hg38 C3N-02300 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/efb4390e-7744-4b34-9606-9d263a6dde14/b5a43bd8-256d-49e7-aa24-af3059dbe2a6_wxs_gdc_realn.bam 32065123921 BAM hg38 efb4390e-7744-4b34-9606-9d263a6dde14 MGI C3N-02300.WXS.T.hg38 C3N-02300 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff126e9d-97ea-430d-bce5-60983885212c/98d7a110-ffda-421d-9fc0-f87a0d921257_wxs_gdc_realn.bam 28482824915 BAM hg38 ff126e9d-97ea-430d-bce5-60983885212c MGI C3N-02302.WXS.N.hg38 C3N-02302 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/fd647e79-8bf9-4737-a55b-a0fb81c19af3/307efc27-4a1a-4bd5-8705-31e1573bd0fb_wxs_gdc_realn.bam 35013630318 BAM hg38 fd647e79-8bf9-4737-a55b-a0fb81c19af3 MGI @@ -3059,33 +3232,44 @@ C3N-02337.WXS.N.hg38 C3N-02337 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyc C3N-02337.WXS.T.hg38 C3N-02337 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/d8d16c0b-bfdd-422b-879a-9fd3e403f07b/f262d2e0-15d6-4d36-8df9-9932021a8268_wxs_gdc_realn.bam 35725807545 BAM hg38 d8d16c0b-bfdd-422b-879a-9fd3e403f07b MGI C3N-02338.WXS.N.hg38 C3N-02338 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e7aff9ae-bdba-4ab6-85c0-487b9a3e1624/da606039-6f4f-4d22-bb19-994cd41fddcd_wxs_gdc_realn.bam 29844629658 BAM hg38 e7aff9ae-bdba-4ab6-85c0-487b9a3e1624 MGI C3N-02338.WXS.T.hg38 C3N-02338 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1885f3a5-715f-4d75-8017-a9936297df04/25efed2a-bca1-4367-803f-e800d2e509d6_wxs_gdc_realn.bam 38471246659 BAM hg38 1885f3a5-715f-4d75-8017-a9936297df04 MGI +C3N-02339.WGS.N.hg38 C3N-02339 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//a19f353c-2b13-4f53-b62a-6c7c11516a13/53109f4a-593a-4191-92b6-a188273d4470_wgs_gdc_realn.bam 98788562322 BAM hg38 a19f353c-2b13-4f53-b62a-6c7c11516a13 MGI C3N-02339.WXS.N.hg38 C3N-02339 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d1fc6600-5eae-4271-8f35-768cc945d06e/53109f4a-593a-4191-92b6-a188273d4470_wxs_gdc_realn.bam 34737318540 BAM hg38 d1fc6600-5eae-4271-8f35-768cc945d06e MGI C3N-02339.WXS.T.hg38 C3N-02339 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7dd5b1a7-554e-4011-b023-5485a5135ee0/dd35d5e7-e2bd-4497-89a1-f7f48740de73_wxs_gdc_realn.bam 33317060282 BAM hg38 7dd5b1a7-554e-4011-b023-5485a5135ee0 MGI C3N-02372.WXS.N.hg38 C3N-02372 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/4bcc4a59-d8f7-48ed-9e34-7fc5150895a4/081a4e84-b6f6-4f0b-b704-d354949b4730_wxs_gdc_realn.bam 32772113930 BAM hg38 4bcc4a59-d8f7-48ed-9e34-7fc5150895a4 MGI C3N-02372.WXS.T.hg38 C3N-02372 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/8f994400-ef0d-491e-8f37-37240e866bde/e3518070-0733-4f7e-b857-3bb3d89a8041_wxs_gdc_realn.bam 31108072202 BAM hg38 8f994400-ef0d-491e-8f37-37240e866bde MGI +C3N-02374.WGS.N.hg38 C3N-02374 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//4e16cc46-ac3e-4426-852c-a2229b92e01f/0db610c9-ca9b-4565-a6ba-e6d8103918ad_wgs_gdc_realn.bam 84947702213 BAM hg38 4e16cc46-ac3e-4426-852c-a2229b92e01f MGI C3N-02374.WXS.N.hg38 C3N-02374 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b0143e55-1562-4f7c-ab33-340309115bf0/0db610c9-ca9b-4565-a6ba-e6d8103918ad_wxs_gdc_realn.bam 37814947685 BAM hg38 b0143e55-1562-4f7c-ab33-340309115bf0 MGI C3N-02374.WXS.T.hg38 C3N-02374 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7464ce2c-3c1e-489c-9725-276850d2a25c/55efde83-7f58-4056-817a-d992871a83f6_wxs_gdc_realn.bam 37861647979 BAM hg38 7464ce2c-3c1e-489c-9725-276850d2a25c MGI +C3N-02375.WGS.N.hg38 C3N-02375 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//63d594ef-815a-4656-bf69-754be2faecce/c17874dd-d150-43ac-9eb8-a6d73af712bc_wgs_gdc_realn.bam 105408582639 BAM hg38 63d594ef-815a-4656-bf69-754be2faecce MGI C3N-02375.WXS.N.hg38 C3N-02375 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a12cda8d-52da-4e45-8d77-de7f80632bae/c17874dd-d150-43ac-9eb8-a6d73af712bc_wxs_gdc_realn.bam 30706822180 BAM hg38 a12cda8d-52da-4e45-8d77-de7f80632bae MGI C3N-02375.WXS.T.hg38 C3N-02375 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/41787f8c-4066-4cb7-9ff5-eced3341f523/495a32a0-f447-400d-a8b5-893945087969_wxs_gdc_realn.bam 34126343746 BAM hg38 41787f8c-4066-4cb7-9ff5-eced3341f523 MGI +C3N-02379.WGS.N.hg38 C3N-02379 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//768b0208-edb7-42a2-a514-51490b939029/65f832db-5d04-48a3-b292-b4554eadc912_wgs_gdc_realn.bam 84212898575 BAM hg38 768b0208-edb7-42a2-a514-51490b939029 MGI C3N-02379.WXS.A.hg38 C3N-02379 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/05ca5873-ef73-4d1f-826c-6ab3609049f8/0581226d-c103-4250-875b-809c077595b7_wxs_gdc_realn.bam 32714457542 BAM hg38 05ca5873-ef73-4d1f-826c-6ab3609049f8 MGI C3N-02379.WXS.N.hg38 C3N-02379 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e9b15b60-d348-4859-aa58-7a0ca91efc65/65f832db-5d04-48a3-b292-b4554eadc912_wxs_gdc_realn.bam 33604778149 BAM hg38 e9b15b60-d348-4859-aa58-7a0ca91efc65 MGI C3N-02379.WXS.T.hg38 C3N-02379 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/baf146e2-0088-4cc6-80db-1e2e364d6800/41acd1fe-34cc-4b28-8c65-2604cbd849f6_wxs_gdc_realn.bam 35139921952 BAM hg38 baf146e2-0088-4cc6-80db-1e2e364d6800 MGI +C3N-02380.WGS.N.hg38 C3N-02380 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//330da8c0-e1a7-4100-93af-fac1e1fec3e6/c3e4b231-2012-4de9-a469-b311f2a98f6e_wgs_gdc_realn.bam 83244421319 BAM hg38 330da8c0-e1a7-4100-93af-fac1e1fec3e6 MGI C3N-02380.WXS.A.hg38 C3N-02380 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/234a847e-eebb-4eb7-9d25-1e76e2fe64fa/9e8b489f-b11f-4dbf-9a2e-ca4d841fd750_wxs_gdc_realn.bam 36399537728 BAM hg38 234a847e-eebb-4eb7-9d25-1e76e2fe64fa MGI C3N-02380.WXS.N.hg38 C3N-02380 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c5887726-96d2-4f3c-aec1-c2535f1deb8a/c3e4b231-2012-4de9-a469-b311f2a98f6e_wxs_gdc_realn.bam 37538702354 BAM hg38 c5887726-96d2-4f3c-aec1-c2535f1deb8a MGI C3N-02380.WXS.T.hg38 C3N-02380 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0e7fdf34-60d9-4f8c-adbd-ccb40ae73e7b/51b40096-00ec-4257-8bcd-95677769074c_wxs_gdc_realn.bam 34287622206 BAM hg38 0e7fdf34-60d9-4f8c-adbd-ccb40ae73e7b MGI +C3N-02421.WGS.N.hg38 C3N-02421 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ec50023b-7ce4-4c19-9689-b8397d5bc8be/17bcd148-f1d4-4761-9af2-57a8d9604f34_wgs_gdc_realn.bam 79436881650 BAM hg38 ec50023b-7ce4-4c19-9689-b8397d5bc8be MGI C3N-02421.WXS.A.hg38 C3N-02421 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/9c6f243f-a285-472b-bba1-a46523b083d0/4bbfd03b-ef99-4bba-aa9c-35a6e3286f4f_wxs_gdc_realn.bam 57520713316 BAM hg38 9c6f243f-a285-472b-bba1-a46523b083d0 MGI C3N-02421.WXS.N.hg38 C3N-02421 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3e46b1e7-a2ee-4c65-9faf-8e219993da80/17bcd148-f1d4-4761-9af2-57a8d9604f34_wxs_gdc_realn.bam 27618331808 BAM hg38 3e46b1e7-a2ee-4c65-9faf-8e219993da80 MGI C3N-02421.WXS.T.hg38 C3N-02421 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/743f1aa5-0b98-4836-b9f0-a76b7525d1af/df52656d-be0f-4c33-ab21-c0683e4a0b72_wxs_gdc_realn.bam 31571843073 BAM hg38 743f1aa5-0b98-4836-b9f0-a76b7525d1af MGI +C3N-02422.WGS.N.hg38 C3N-02422 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//553a682a-ab16-40b5-a63c-663fd2b8a652/992af5b1-11e4-4fa6-9893-e1f5b46f1855_wgs_gdc_realn.bam 85418823367 BAM hg38 553a682a-ab16-40b5-a63c-663fd2b8a652 MGI C3N-02422.WXS.N.hg38 C3N-02422 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c2a5c0aa-f145-489d-ba4e-4988c9f362d6/992af5b1-11e4-4fa6-9893-e1f5b46f1855_wxs_gdc_realn.bam 35017763835 BAM hg38 c2a5c0aa-f145-489d-ba4e-4988c9f362d6 MGI C3N-02422.WXS.T.hg38 C3N-02422 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b42b5652-41e3-4a3a-96db-900de3e9e466/cbc0b258-c4ca-422e-92cf-764929637731_wxs_gdc_realn.bam 33066135267 BAM hg38 b42b5652-41e3-4a3a-96db-900de3e9e466 MGI +C3N-02423.WGS.N.hg38 C3N-02423 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//1f8046db-25cb-4977-940b-49d90026fe74/8a50eabb-8cb9-48fd-875a-f83ae14a0f3a_wgs_gdc_realn.bam 93560628391 BAM hg38 1f8046db-25cb-4977-940b-49d90026fe74 MGI C3N-02423.WXS.A.hg38 C3N-02423 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0e1def47-9169-41bd-9387-2cecbb61e66a/ab6eb7aa-5447-4e8a-89fd-c608b23c46c1_wxs_gdc_realn.bam 66166826481 BAM hg38 0e1def47-9169-41bd-9387-2cecbb61e66a MGI C3N-02423.WXS.N.hg38 C3N-02423 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a5d7bd93-5120-4c07-a22b-4da7663ba9c6/8a50eabb-8cb9-48fd-875a-f83ae14a0f3a_wxs_gdc_realn.bam 38432990320 BAM hg38 a5d7bd93-5120-4c07-a22b-4da7663ba9c6 MGI C3N-02423.WXS.T.hg38 C3N-02423 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/dce3d113-f350-4898-89b4-4b5b74cafcfd/274ceeb7-b7b7-4b02-be3f-38a503721389_wxs_gdc_realn.bam 33976030240 BAM hg38 dce3d113-f350-4898-89b4-4b5b74cafcfd MGI +C3N-02424.WGS.N.hg38 C3N-02424 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//19e3ade5-44c5-4976-8f68-a2f41c39f6a4/b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wgs_gdc_realn.bam 82548105039 BAM hg38 19e3ade5-44c5-4976-8f68-a2f41c39f6a4 MGI C3N-02424.WXS.A.hg38 C3N-02424 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/68c40083-a383-4658-af7b-57ceb40cbbed/67833e4f-0dc8-4ac0-8ce9-6ee52ecd2375_wxs_gdc_realn.bam 32004020387 BAM hg38 68c40083-a383-4658-af7b-57ceb40cbbed MGI C3N-02424.WXS.N.hg38 C3N-02424 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/95c65d7f-22cc-4d98-9558-857cbd8b059e/b4e53e9f-2917-4cae-b2c6-6feaa2594d37_wxs_gdc_realn.bam 47082662299 BAM hg38 95c65d7f-22cc-4d98-9558-857cbd8b059e MGI C3N-02424.WXS.T.hg38 C3N-02424 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/053f60e4-9af4-4f76-b385-ad3b64f3309f/8a378a0d-4f1b-434b-bb5d-1c58464508c7_wxs_gdc_realn.bam 29865328145 BAM hg38 053f60e4-9af4-4f76-b385-ad3b64f3309f MGI +C3N-02425.WGS.N.hg38 C3N-02425 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//609f227d-1b3f-47be-86f2-8cd4abbd2c25/72330c53-0b7a-409b-9e93-11c08fc31d6d_wgs_gdc_realn.bam 94482265954 BAM hg38 609f227d-1b3f-47be-86f2-8cd4abbd2c25 MGI C3N-02425.WXS.N.hg38 C3N-02425 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eaa786cd-e457-427d-85c3-cfdd9897cde2/72330c53-0b7a-409b-9e93-11c08fc31d6d_wxs_gdc_realn.bam 30336413356 BAM hg38 eaa786cd-e457-427d-85c3-cfdd9897cde2 MGI C3N-02425.WXS.T.hg38 C3N-02425 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1bb8f868-05ec-45c8-8edd-959cb60855b8/e34fc8d9-c7d2-4546-a98a-b789b4789e3c_wxs_gdc_realn.bam 35276894044 BAM hg38 1bb8f868-05ec-45c8-8edd-959cb60855b8 MGI +C3N-02426.WGS.N.hg38 C3N-02426 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//abc333f7-1456-4fb9-999b-4e8089e0dee3/6050187d-95a4-438f-8e26-77e9a3f19eae_wgs_gdc_realn.bam 93855791086 BAM hg38 abc333f7-1456-4fb9-999b-4e8089e0dee3 MGI C3N-02426.WXS.N.hg38 C3N-02426 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7b9c2faa-b0be-4b61-b977-c34bcd75c9e9/6050187d-95a4-438f-8e26-77e9a3f19eae_wxs_gdc_realn.bam 31017409374 BAM hg38 7b9c2faa-b0be-4b61-b977-c34bcd75c9e9 MGI C3N-02426.WXS.T.hg38 C3N-02426 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/68b3a87d-f49f-48ae-be9c-d6edd25e780d/700bad5b-96de-413e-bf46-3cdb5c72ad02_wxs_gdc_realn.bam 31823894935 BAM hg38 68b3a87d-f49f-48ae-be9c-d6edd25e780d MGI C3N-02429.WXS.N.hg38 C3N-02429 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6c917e82-377a-4b48-8e0d-201c4c903b4b/408bb107-9884-4af4-88df-7e0012ce26d3_wxs_gdc_realn.bam 29788929191 BAM hg38 6c917e82-377a-4b48-8e0d-201c4c903b4b MGI @@ -3093,11 +3277,14 @@ C3N-02429.WXS.T.hg38 C3N-02429 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3N-02431.WXS.A.hg38 C3N-02431 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c6123edd-473e-4911-9987-6744d48bf546/e51e75b2-b6f1-4bcb-b073-c89e867e1fa8_wxs_gdc_realn.bam 28178151784 BAM hg38 c6123edd-473e-4911-9987-6744d48bf546 MGI C3N-02431.WXS.N.hg38 C3N-02431 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2d0211fd-e6af-4f21-a1b3-5bcb521a63cd/8836c002-6b85-4c30-97cf-8ba51924f07a_wxs_gdc_realn.bam 29401187890 BAM hg38 2d0211fd-e6af-4f21-a1b3-5bcb521a63cd MGI C3N-02431.WXS.T.hg38 C3N-02431 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c43c868f-ee0f-488a-8447-55ed1826337d/8b339bfe-4e79-48f2-9a3f-b5cc37487039_wxs_gdc_realn.bam 36657940360 BAM hg38 c43c868f-ee0f-488a-8447-55ed1826337d MGI +C3N-02433.WGS.N.hg38 C3N-02433 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//bf71e4a2-7f68-4333-8f25-0c00054bd995/075c856b-bc17-431b-9692-d02ec4b39a32_wgs_gdc_realn.bam 81719235650 BAM hg38 bf71e4a2-7f68-4333-8f25-0c00054bd995 MGI C3N-02433.WXS.A.hg38 C3N-02433 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/adff7c9b-f80e-4399-a930-cbb90652ecce/0f0b6fff-90e7-4b7a-9400-6f9a623eac81_wxs_gdc_realn.bam 37363671564 BAM hg38 adff7c9b-f80e-4399-a930-cbb90652ecce MGI C3N-02433.WXS.N.hg38 C3N-02433 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/36ff8ff4-7bef-49f9-a8f8-b0843c0b7241/075c856b-bc17-431b-9692-d02ec4b39a32_wxs_gdc_realn.bam 31925080780 BAM hg38 36ff8ff4-7bef-49f9-a8f8-b0843c0b7241 MGI C3N-02433.WXS.T.hg38 C3N-02433 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/dcd1b30f-3f83-441b-8073-9bc5c9cae1cb/4285bae5-67c5-466a-b08b-ddc845151568_wxs_gdc_realn.bam 37286723079 BAM hg38 dcd1b30f-3f83-441b-8073-9bc5c9cae1cb MGI +C3N-02434.WGS.N.hg38 C3N-02434 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//ac0f592d-1ce6-4cc2-afb3-0484a93af603/e7171412-d3ad-4793-ad31-101dab6a7d2e_wgs_gdc_realn.bam 85325708618 BAM hg38 ac0f592d-1ce6-4cc2-afb3-0484a93af603 MGI C3N-02434.WXS.N.hg38 C3N-02434 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/af765aa7-07a6-4bec-8f12-8e0a6d0c193e/e7171412-d3ad-4793-ad31-101dab6a7d2e_wxs_gdc_realn.bam 34440493529 BAM hg38 af765aa7-07a6-4bec-8f12-8e0a6d0c193e MGI C3N-02434.WXS.T.hg38 C3N-02434 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/60b1a4c5-7b90-40bd-8a01-c67d2bcb29aa/3b07b204-2fa5-46a2-8b88-ebf0c39b0f03_wxs_gdc_realn.bam 39600416463 BAM hg38 60b1a4c5-7b90-40bd-8a01-c67d2bcb29aa MGI +C3N-02435.WGS.N.hg38 C3N-02435 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//04c389c7-e942-48a7-b22d-c85ede5ecc77/0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wgs_gdc_realn.bam 192299604099 BAM hg38 04c389c7-e942-48a7-b22d-c85ede5ecc77 MGI C3N-02435.WXS.N.hg38 C3N-02435 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/db1c4701-ae3b-45fa-a6aa-6c6356cac883/0bae0fae-6a3e-4fb0-a80f-1bf415e72b5e_wxs_gdc_realn.bam 34941809237 BAM hg38 db1c4701-ae3b-45fa-a6aa-6c6356cac883 MGI C3N-02435.WXS.T.hg38 C3N-02435 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/08c58f05-9147-411b-af8e-ebc2ff60f56b/cba5b303-2d15-4b89-af40-deb7918cef18_wxs_gdc_realn.bam 33864761049 BAM hg38 08c58f05-9147-411b-af8e-ebc2ff60f56b MGI C3N-02436.WXS.A.hg38 C3N-02436 UCEC WXS tissue_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/9cdfe959-fec9-44a9-b38b-f4d9d7f26c5a/6ebd882f-3982-46ed-b633-12077b6bab88_wxs_gdc_realn.bam 24883837055 BAM hg38 9cdfe959-fec9-44a9-b38b-f4d9d7f26c5a MGI @@ -3111,18 +3298,23 @@ C3N-02439.WXS.T.hg38 C3N-02439 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/G C3N-02451.WXS.A.hg38 C3N-02451 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c58ae13a-83d5-42e4-a35e-9f4727354f7b/51427fc3-1771-4411-ba8d-9d9a8aacab8e_wxs_gdc_realn.bam 36258085459 BAM hg38 c58ae13a-83d5-42e4-a35e-9f4727354f7b MGI C3N-02451.WXS.N.hg38 C3N-02451 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a8da60ec-83c4-4608-b4eb-bbc7882ebf29/63ece0bb-876d-4c0f-9251-1a39216e701e_wxs_gdc_realn.bam 32187977799 BAM hg38 a8da60ec-83c4-4608-b4eb-bbc7882ebf29 MGI C3N-02451.WXS.T.hg38 C3N-02451 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e120e2c6-e093-460b-9b95-910150a410d4/2d3be50b-acef-4dbb-9f81-09afd71a6d01_wxs_gdc_realn.bam 28994478490 BAM hg38 e120e2c6-e093-460b-9b95-910150a410d4 MGI +C3N-02494.WGS.N.hg38 C3N-02494 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//1a090903-7d30-4882-9dd3-96994dc4ee8a/826b8522-ba14-49a4-9de2-476a38a1f58b_wgs_gdc_realn.bam 184833543871 BAM hg38 1a090903-7d30-4882-9dd3-96994dc4ee8a MGI C3N-02494.WXS.N.hg38 C3N-02494 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/88f0822d-0b68-4b77-95b0-f912e0b85cbd/826b8522-ba14-49a4-9de2-476a38a1f58b_wxs_gdc_realn.bam 37573028390 BAM hg38 88f0822d-0b68-4b77-95b0-f912e0b85cbd MGI C3N-02494.WXS.T.hg38 C3N-02494 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/81e52b68-d374-46d2-8530-b0c1c2877da7/2683741f-4fc1-413d-89e4-8b0e31b781a4_wxs_gdc_realn.bam 30211694514 BAM hg38 81e52b68-d374-46d2-8530-b0c1c2877da7 MGI +C3N-02523.WGS.N.hg38 C3N-02523 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//73b16f58-41fe-44ef-b653-b881d70a5894/d3898b9b-e275-4f84-b7ad-808669463672_wgs_gdc_realn.bam 167109332575 BAM hg38 73b16f58-41fe-44ef-b653-b881d70a5894 MGI C3N-02523.WXS.N.hg38 C3N-02523 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2a16a8dd-0c7c-4547-b6cc-d988914d21fc/d3898b9b-e275-4f84-b7ad-808669463672_wxs_gdc_realn.bam 37065582918 BAM hg38 2a16a8dd-0c7c-4547-b6cc-d988914d21fc MGI C3N-02523.WXS.T.hg38 C3N-02523 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bfcc212e-71c1-49b1-ab06-07a05fa31676/f05424ce-b910-4564-b808-a01185fe69cf_wxs_gdc_realn.bam 33980146354 BAM hg38 bfcc212e-71c1-49b1-ab06-07a05fa31676 MGI +C3N-02529.WGS.N.hg38 C3N-02529 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e52a2f34-d3d1-4a00-9669-b9f670b4ac8a/f5d583a7-082d-4092-8fe4-98747800f95d_wgs_gdc_realn.bam 87551896214 BAM hg38 e52a2f34-d3d1-4a00-9669-b9f670b4ac8a MGI C3N-02529.WXS.A.hg38 C3N-02529 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f1ea9160-8ee0-4197-865b-3a7407c88354/6b3df7a3-49c3-44c1-9496-030df7e028b9_wxs_gdc_realn.bam 32128293353 BAM hg38 f1ea9160-8ee0-4197-865b-3a7407c88354 MGI C3N-02529.WXS.N.hg38 C3N-02529 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/786a2fc7-afa1-4450-969a-add3699c2d27/f5d583a7-082d-4092-8fe4-98747800f95d_wxs_gdc_realn.bam 40105068850 BAM hg38 786a2fc7-afa1-4450-969a-add3699c2d27 MGI C3N-02529.WXS.T.hg38 C3N-02529 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3f43c4e0-6953-43ec-9a3d-0ae095105fa1/3fa7720d-8632-4e9f-8de8-a87db733f78c_wxs_gdc_realn.bam 42705672042 BAM hg38 3f43c4e0-6953-43ec-9a3d-0ae095105fa1 MGI +C3N-02572.WGS.N.hg38 C3N-02572 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b168ed6b-6a75-48b5-b9c9-caa8c194e3e5/ad8eca4d-0dd4-4e8f-b143-2e59ec41059d_wgs_gdc_realn.bam 82634035288 BAM hg38 b168ed6b-6a75-48b5-b9c9-caa8c194e3e5 MGI C3N-02572.WXS.A.hg38 C3N-02572 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/91ca5f89-aa04-4e1f-9371-236ec0dd35ee/476aee9b-cbb5-41de-b8e6-25f78d860639_wxs_gdc_realn.bam 34589845123 BAM hg38 91ca5f89-aa04-4e1f-9371-236ec0dd35ee MGI C3N-02572.WXS.N.hg38 C3N-02572 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2ad0e396-dc6e-40ad-8709-097976ab1ccc/ad8eca4d-0dd4-4e8f-b143-2e59ec41059d_wxs_gdc_realn.bam 31362321035 BAM hg38 2ad0e396-dc6e-40ad-8709-097976ab1ccc MGI C3N-02572.WXS.T.hg38 C3N-02572 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a03ec155-35f2-4a47-be49-8f5537271a7f/59f39740-a3f7-4c94-bcfa-ee614860b0bd_wxs_gdc_realn.bam 32179096356 BAM hg38 a03ec155-35f2-4a47-be49-8f5537271a7f MGI C3N-02573.WXS.N.hg38 C3N-02573 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/60dd2c65-b051-4d0f-afd1-ecc59eef3b51/935b0c08-6d0d-427b-8161-738fda126ac0_wxs_gdc_realn.bam 38462419760 BAM hg38 60dd2c65-b051-4d0f-afd1-ecc59eef3b51 MGI C3N-02573.WXS.T.hg38.high_cov C3N-02573 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/55d6e56f-521b-4467-bb59-655b458c74ae/09bdd740-6032-4adf-b829-b3e04b05bf3c_wxs_gdc_realn.bam 63394719927 BAM hg38 55d6e56f-521b-4467-bb59-655b458c74ae MGI +C3N-02575.WGS.N.hg38 C3N-02575 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//087ff243-04f7-469f-8fa6-1eaae55e2e51/0d386142-f9ba-4144-b249-cc863cd80733_wgs_gdc_realn.bam 87571271106 BAM hg38 087ff243-04f7-469f-8fa6-1eaae55e2e51 MGI C3N-02575.WXS.N.hg38 C3N-02575 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/56807924-45f6-4cfb-9d3c-0852490bf541/0d386142-f9ba-4144-b249-cc863cd80733_wxs_gdc_realn.bam 33869950798 BAM hg38 56807924-45f6-4cfb-9d3c-0852490bf541 MGI C3N-02575.WXS.T.hg38 C3N-02575 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/59261408-9819-4d53-9558-24492ab78705/c13bec2b-8009-4020-831a-4b6f51dfc6c4_wxs_gdc_realn.bam 53457541421 BAM hg38 59261408-9819-4d53-9558-24492ab78705 MGI C3N-02577.WXS.A.hg38 C3N-02577 CCRCC WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cdf7e14c-5885-44a1-a893-764600f4df3d/7218ed28-7ce6-4e76-b950-0b0263a8dc9d_wxs_gdc_realn.bam 29144093631 BAM hg38 cdf7e14c-5885-44a1-a893-764600f4df3d MGI @@ -3130,6 +3322,7 @@ C3N-02577.WXS.N.hg38 C3N-02577 CCRCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3 C3N-02577.WXS.T.hg38 C3N-02577 CCRCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d7cc076a-05e2-415d-be2b-4741e3d56fb8/144b7fc3-4170-499b-9fc0-4fa930de9fcf_wxs_gdc_realn.bam 40588972675 BAM hg38 d7cc076a-05e2-415d-be2b-4741e3d56fb8 MGI C3N-02579.WXS.N.hg38 C3N-02579 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bce24c2d-7b0f-4c3c-881c-c90f482baabb/c133d775-d52b-4007-966a-36dc5d716e60_wxs_gdc_realn.bam 33441247639 BAM hg38 bce24c2d-7b0f-4c3c-881c-c90f482baabb MGI C3N-02579.WXS.T.hg38.high_cov C3N-02579 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4cf4ba48-7e6a-4c4d-9c7f-4881b9f1e0db/1f95b327-af03-4af5-9888-ac6c688fd49f_wxs_gdc_realn.bam 60950680073 BAM hg38 4cf4ba48-7e6a-4c4d-9c7f-4881b9f1e0db MGI +C3N-02582.WGS.N.hg38 C3N-02582 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//d09b9ffc-f873-402a-aeea-4775dd37e88b/f2ace677-28ab-4e3b-a334-6eea54e87495_wgs_gdc_realn.bam 80421167018 BAM hg38 d09b9ffc-f873-402a-aeea-4775dd37e88b MGI C3N-02582.WXS.A.hg38 C3N-02582 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f545a554-cbe9-4b50-86eb-7722feff2f00/cf4fb393-83a1-4b9b-9099-4eae34b29129_wxs_gdc_realn.bam 44188493237 BAM hg38 f545a554-cbe9-4b50-86eb-7722feff2f00 MGI C3N-02582.WXS.N.hg38 C3N-02582 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f0493524-34fb-42de-812b-5ac5f2ae6434/f2ace677-28ab-4e3b-a334-6eea54e87495_wxs_gdc_realn.bam 47159565884 BAM hg38 f0493524-34fb-42de-812b-5ac5f2ae6434 MGI C3N-02582.WXS.T.hg38 C3N-02582 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2261293a-0b88-4a0d-bf24-2cf01a99bec1/5c8086ed-b146-44ad-9c30-0efc4c54d072_wxs_gdc_realn.bam 29689423570 BAM hg38 2261293a-0b88-4a0d-bf24-2cf01a99bec1 MGI @@ -3137,14 +3330,17 @@ C3N-02585.WXS.A.hg38 C3N-02585 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3- C3N-02585.WXS.N.hg38 C3N-02585 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c15928cb-6798-40c7-8834-538d4a0bce7d/2d6b05e6-7e99-4cfa-925f-2b617bb26f2b_wxs_gdc_realn.bam 47399084033 BAM hg38 c15928cb-6798-40c7-8834-538d4a0bce7d MGI C3N-02585.WXS.T.hg38.high_cov C3N-02585 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2ab76a3d-b9b9-4914-8b78-ac08af372bdb/9f82cf73-0d4d-49e2-a89a-6f482fa01773_wxs_gdc_realn.bam 70915107981 BAM hg38 2ab76a3d-b9b9-4914-8b78-ac08af372bdb MGI C3N-02586.Targeted.T C3N-02586 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b333a01f-8a99-4386-91e6-11c5d4c955ae/CPT0147980010.CustomSelection.RP-1303.PDO-18786.bam 4733831323 BAM hg19 b333a01f-8a99-4386-91e6-11c5d4c955ae MGI +C3N-02586.WGS.N.hg38 C3N-02586 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//14f36c4d-08fc-4db8-9b78-63ec2462aa60/84458a40-db8a-4990-b3c0-3a22f842e9b3_wgs_gdc_realn.bam 82744521359 BAM hg38 14f36c4d-08fc-4db8-9b78-63ec2462aa60 MGI C3N-02586.WXS.A.hg38 C3N-02586 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/13b3d0cc-73c3-40bc-8e06-2ef35e3965dc/e7e39aef-a6af-4333-9fa1-06682a5b5bce_wxs_gdc_realn.bam 31667387232 BAM hg38 13b3d0cc-73c3-40bc-8e06-2ef35e3965dc MGI C3N-02586.WXS.N.hg38 C3N-02586 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e065c736-b5ab-4af6-8e6e-15f0a2622475/84458a40-db8a-4990-b3c0-3a22f842e9b3_wxs_gdc_realn.bam 64603223832 BAM hg38 e065c736-b5ab-4af6-8e6e-15f0a2622475 MGI C3N-02586.WXS.T.hg38 C3N-02586 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/37832802-e1f4-43f7-bc46-67bcc4233f2b/73ee6f62-37dc-43b0-8ff4-0a8c1c1a2f17_wxs_gdc_realn.bam 35368510426 BAM hg38 37832802-e1f4-43f7-bc46-67bcc4233f2b MGI C3N-02587.Targeted.T C3N-02587 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e52d6091-8366-469e-9f8b-e7253b46499e/CPT0148080010.CustomSelection.RP-1303.PDO-18786.bam 5083127666 BAM hg19 e52d6091-8366-469e-9f8b-e7253b46499e MGI +C3N-02587.WGS.N.hg38 C3N-02587 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//bfdfc3e7-d5d5-4c1c-b626-d5b6c9b5baa2/ba9013c4-8616-44e1-9ed7-7cfbc4a74e1f_wgs_gdc_realn.bam 84123488813 BAM hg38 bfdfc3e7-d5d5-4c1c-b626-d5b6c9b5baa2 MGI C3N-02587.WXS.A.hg38 C3N-02587 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5cbc8539-406e-4951-b913-5c6fef73d75a/b33f6da6-8365-4800-bf4e-a13314058485_wxs_gdc_realn.bam 28667550265 BAM hg38 5cbc8539-406e-4951-b913-5c6fef73d75a MGI C3N-02587.WXS.N.hg38 C3N-02587 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6dbf4461-1e68-4b6c-8dd0-7a96da5d7214/ba9013c4-8616-44e1-9ed7-7cfbc4a74e1f_wxs_gdc_realn.bam 62240721774 BAM hg38 6dbf4461-1e68-4b6c-8dd0-7a96da5d7214 MGI C3N-02587.WXS.T.hg38 C3N-02587 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0e7f0ebf-378c-4dae-8e11-ed229e13dddb/d6125e9e-214c-48d0-a98d-3c10a87ff09e_wxs_gdc_realn.bam 39479864742 BAM hg38 0e7f0ebf-378c-4dae-8e11-ed229e13dddb MGI C3N-02588.Targeted.T C3N-02588 LUAD Targeted Sequencing tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d7806929-4953-4442-a8c3-c5d8a4645f30/CPT0148180010.CustomSelection.RP-1303.PDO-18786.bam 4664758335 BAM hg19 d7806929-4953-4442-a8c3-c5d8a4645f30 MGI +C3N-02588.WGS.N.hg38 C3N-02588 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//098847a4-df2b-49e0-8511-3cb83fe7b996/a05ec13f-5c47-458c-8aea-1154de9ccba1_wgs_gdc_realn.bam 96160115740 BAM hg38 098847a4-df2b-49e0-8511-3cb83fe7b996 MGI C3N-02588.WXS.A.hg38 C3N-02588 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0286aa78-00ea-41fe-9b21-8013a64a908a/fdb85fa8-e844-4264-a18d-e9ae929b7cc0_wxs_gdc_realn.bam 33611725143 BAM hg38 0286aa78-00ea-41fe-9b21-8013a64a908a MGI C3N-02588.WXS.N.hg38 C3N-02588 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c463b66a-ba7d-479b-89d0-e48d7a801c83/a05ec13f-5c47-458c-8aea-1154de9ccba1_wxs_gdc_realn.bam 36033314944 BAM hg38 c463b66a-ba7d-479b-89d0-e48d7a801c83 MGI C3N-02588.WXS.T.hg38 C3N-02588 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2ae183a5-d519-4133-aa51-b195ec309011/7c314644-9f5c-4fe4-8145-3c70a6d08133_wxs_gdc_realn.bam 54764778675 BAM hg38 2ae183a5-d519-4133-aa51-b195ec309011 MGI @@ -3180,6 +3376,7 @@ C3N-02639.WXS.T.hg38 C3N-02639 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/so C3N-02672.WXS.A.hg38 C3N-02672 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/98e01a7d-47f4-4e4e-8623-243eeecd0427/4326e8bf-a2a8-4e93-a10c-1565e387d2d8_wxs_gdc_realn.bam 36898214667 BAM hg38 98e01a7d-47f4-4e4e-8623-243eeecd0427 MGI C3N-02672.WXS.N.hg38 C3N-02672 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/254541eb-69b9-406f-affe-2491cac9ca24/d6f68369-a57e-4335-bea5-961283563bb4_wxs_gdc_realn.bam 32240669095 BAM hg38 254541eb-69b9-406f-affe-2491cac9ca24 MGI C3N-02672.WXS.T.hg38 C3N-02672 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a44f0416-fb8d-4958-8233-227c63d3dfa7/1afc8168-1ab4-4065-bed1-f6058b5c0e7e_wxs_gdc_realn.bam 34532277161 BAM hg38 a44f0416-fb8d-4958-8233-227c63d3dfa7 MGI +C3N-02675.WGS.N.hg38 C3N-02675 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//46649ff8-5eef-461d-be8e-cb0e0b8ee733/fce61b54-8a30-48b3-ba10-2be185ce46c3_wgs_gdc_realn.bam 97745091869 BAM hg38 46649ff8-5eef-461d-be8e-cb0e0b8ee733 MGI C3N-02675.WXS.N.hg38 C3N-02675 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/589bf1b6-fabf-403b-9026-85a37176cfba/fce61b54-8a30-48b3-ba10-2be185ce46c3_wxs_gdc_realn.bam 26873956021 BAM hg38 589bf1b6-fabf-403b-9026-85a37176cfba MGI C3N-02675.WXS.T.hg38 C3N-02675 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/973de55c-7077-4f7d-883b-079c2b9da4f1/710d992c-4b0c-4c62-bd56-075b0b8ccd48_wxs_gdc_realn.bam 27114621409 BAM hg38 973de55c-7077-4f7d-883b-079c2b9da4f1 MGI C3N-02678.WXS.N.hg38 C3N-02678 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/ca16e0cd-da52-46c8-aa48-bf1c28ce3e22/e63fe275-2c51-449e-805b-1a2447ccb101_wxs_gdc_realn.bam 37542203716 BAM hg38 ca16e0cd-da52-46c8-aa48-bf1c28ce3e22 MGI @@ -3226,6 +3423,7 @@ C3N-02727.WXS.T.RDNA_o2QKOJL.hg38 C3N-02727 HNSCC WXS tumor /gscmnt/gc2521/dingl C3N-02728.WXS.A.hg38 C3N-02728 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a59f033a-3c00-45f6-be51-fe6e3138e323/e4cb67e9-3d83-4cfb-b75e-501720195dd7_wxs_gdc_realn.bam 29913246253 BAM hg38 a59f033a-3c00-45f6-be51-fe6e3138e323 MGI C3N-02728.WXS.N.hg38 C3N-02728 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7141d494-8fdd-4692-b090-cf99573aefc6/dc701198-9ba3-4d3a-8bdd-237021bb43d7_wxs_gdc_realn.bam 38540829129 BAM hg38 7141d494-8fdd-4692-b090-cf99573aefc6 MGI C3N-02728.WXS.T.hg38 C3N-02728 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/be5c26eb-ce72-4d4f-b33b-b91a2f7ce492/7f0ab742-8b67-446d-b46f-9f46e0c33160_wxs_gdc_realn.bam 37447188249 BAM hg38 be5c26eb-ce72-4d4f-b33b-b91a2f7ce492 MGI +C3N-02729.WGS.N.hg38 C3N-02729 LUAD WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//30958cdc-5c72-413d-8ffe-6d3b55b38bc5/b323a8a3-1853-41c7-b166-dfa3a1dbc32b_wgs_gdc_realn.bam 93463162539 BAM hg38 30958cdc-5c72-413d-8ffe-6d3b55b38bc5 MGI C3N-02729.WXS.A.hg38 C3N-02729 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/59abe3d4-3fd6-43a3-94c2-caf0e0047291/4fa1d226-b5d3-4351-9f5e-b96922134dcf_wxs_gdc_realn.bam 32377813036 BAM hg38 59abe3d4-3fd6-43a3-94c2-caf0e0047291 MGI C3N-02729.WXS.N.hg38 C3N-02729 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/17748956-bce7-4c4d-a6fe-725f2c7cc030/b323a8a3-1853-41c7-b166-dfa3a1dbc32b_wxs_gdc_realn.bam 43416494427 BAM hg38 17748956-bce7-4c4d-a6fe-725f2c7cc030 MGI C3N-02729.WXS.T.hg38 C3N-02729 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5f2ff26c-b856-4ec4-978d-a214595c88d2/a47247f3-753f-4e6f-820f-4c408ed60d32_wxs_gdc_realn.bam 34332633925 BAM hg38 5f2ff26c-b856-4ec4-978d-a214595c88d2 MGI @@ -3394,6 +3592,7 @@ C3N-03042.WXS.N.hg38 C3N-03042 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3N-03042.WXS.T.hg38 C3N-03042 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/78a89d30-eb59-4b4e-a7d5-50435b2c6740/385ba2e4-215b-41d3-898f-70ce3b49122a_wxs_gdc_realn.bam 35970374203 BAM hg38 78a89d30-eb59-4b4e-a7d5-50435b2c6740 MGI C3N-03045.WXS.N.hg38 C3N-03045 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1efc81ad-9da6-4eff-82c8-394b036b2ac3/10aa4de5-0954-48a0-8eb0-79762083515d_wxs_gdc_realn.bam 36660839497 BAM hg38 1efc81ad-9da6-4eff-82c8-394b036b2ac3 MGI C3N-03045.WXS.T.hg38 C3N-03045 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1360dda0-8d3c-481a-b160-2d085bc4d219/4cc74c91-25c6-4051-b4ba-eee19c2858f4_wxs_gdc_realn.bam 38901298782 BAM hg38 1360dda0-8d3c-481a-b160-2d085bc4d219 MGI +C3N-03051.WGS.N.hg38 C3N-03051 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//c5552d09-5af1-462f-9d39-acc70d4d4de2/82120e94-1c95-43ec-8d66-2b7e80777cfc_wgs_gdc_realn.bam 173475741404 BAM hg38 c5552d09-5af1-462f-9d39-acc70d4d4de2 MGI C3N-03051.WXS.N.hg38 C3N-03051 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6090b05d-fc6b-44c2-9a57-d29c1b19d00a/82120e94-1c95-43ec-8d66-2b7e80777cfc_wxs_gdc_realn.bam 38168656678 BAM hg38 6090b05d-fc6b-44c2-9a57-d29c1b19d00a MGI C3N-03051.WXS.T.hg38 C3N-03051 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cba55a20-b692-4201-af3a-bac6f2d2d39c/ad04e66f-3736-4e44-bded-696cf702868b_wxs_gdc_realn.bam 37603582485 BAM hg38 cba55a20-b692-4201-af3a-bac6f2d2d39c MGI C3N-03052.WXS.A.hg38 C3N-03052 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8d0b8f2a-8a20-4e41-8732-de355c5c766b/020eac5c-ddd7-476b-98e8-63c777712152_wxs_gdc_realn.bam 31610092165 BAM hg38 8d0b8f2a-8a20-4e41-8732-de355c5c766b MGI @@ -3415,6 +3614,7 @@ C3N-03069.WXS.T.hg38.high_cov C3N-03069 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3 C3N-03070.RNA-Seq.genomic.T.hg38 C3N-03070 GBM RNA-Seq tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7c160e4f-ab20-4f24-9d15-2bf00a92e15a/b1caea76-fffa-42a4-8147-c0135dc5368e.rna_seq.genomic.gdc_realn.bam 9363551235 BAM hg38 7c160e4f-ab20-4f24-9d15-2bf00a92e15a MGI C3N-03070.WXS.N.hg38 C3N-03070 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b1e95f84-e3a5-42e6-8f3c-3c36aa6d8717/13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wxs_gdc_realn.bam 34635416670 BAM hg38 b1e95f84-e3a5-42e6-8f3c-3c36aa6d8717 MGI C3N-03070.WXS.T.hg38 C3N-03070 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cbb19af6-b203-45bb-98a4-7355dab042b9/3d3a5916-ded3-4257-84d2-b71a75547112_wxs_gdc_realn.bam 38712464689 BAM hg38 cbb19af6-b203-45bb-98a4-7355dab042b9 MGI +C3N-03072.WGS.N.hg38 C3N-03072 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f/d1fe7625-edef-4de3-8580-c5a1e327b334_wgs_gdc_realn.bam 151186957717 BAM hg38 82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f MGI C3N-03072.WXS.N.hg38 C3N-03072 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/35c64665-2925-450f-afc4-cc81d12fab1a/d1fe7625-edef-4de3-8580-c5a1e327b334_wxs_gdc_realn.bam 33951127306 BAM hg38 35c64665-2925-450f-afc4-cc81d12fab1a MGI C3N-03072.WXS.T.hg38 C3N-03072 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ca845ba9-487e-4de6-a202-74ed414d654a/a695af96-c8ba-42aa-8290-8f485ccdbdb2_wxs_gdc_realn.bam 44490978097 BAM hg38 ca845ba9-487e-4de6-a202-74ed414d654a MGI C3N-03073.WXS.A.hg38 C3N-03073 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/08719668-6ac9-448f-9d0a-ed2c52706f44/78689c3d-5805-4bba-92e6-b6adb0b3ef33_wxs_gdc_realn.bam 34864563871 BAM hg38 08719668-6ac9-448f-9d0a-ed2c52706f44 MGI @@ -3423,6 +3623,7 @@ C3N-03073.WXS.T.hg38 C3N-03073 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD C3N-03074.WXS.A.hg38 C3N-03074 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/42492b65-2c2c-46b9-867b-6d667ed52774/aea871d6-0a8c-4ff9-b297-7939b1889468_wxs_gdc_realn.bam 28860718671 BAM hg38 42492b65-2c2c-46b9-867b-6d667ed52774 MGI C3N-03074.WXS.N.hg38 C3N-03074 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e824b25d-5e59-4890-bc67-0b8b6a74ea2a/8f87622c-43e3-4176-849f-8334b1a8eefa_wxs_gdc_realn.bam 39083322636 BAM hg38 e824b25d-5e59-4890-bc67-0b8b6a74ea2a MGI C3N-03074.WXS.T.hg38 C3N-03074 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7778c84e-34d6-4984-8bc7-0b3566f61bab/9323ca12-aefe-4fa5-ab15-e9b3a8e68fa3_wxs_gdc_realn.bam 39175292582 BAM hg38 7778c84e-34d6-4984-8bc7-0b3566f61bab MGI +C3N-03076.WGS.N.hg38 C3N-03076 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//67ebae8e-90b8-46d9-a98a-aec6cd48fc07/fd173e62-56bf-400c-a27f-4109dc0d92d5_wgs_gdc_realn.bam 144925177216 BAM hg38 67ebae8e-90b8-46d9-a98a-aec6cd48fc07 MGI C3N-03076.WXS.N.hg38 C3N-03076 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ace21e30-003b-49dc-872f-eaa91c86810a/fd173e62-56bf-400c-a27f-4109dc0d92d5_wxs_gdc_realn.bam 40495867933 BAM hg38 ace21e30-003b-49dc-872f-eaa91c86810a MGI C3N-03076.WXS.T.hg38 C3N-03076 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d0ccfe79-5602-4b42-a886-e15b014b74c3/dba1ce27-57d7-4430-af83-f44f7cf2b203_wxs_gdc_realn.bam 36607213627 BAM hg38 d0ccfe79-5602-4b42-a886-e15b014b74c3 MGI C3N-03080.WXS.A.hg38 C3N-03080 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e386a703-8f2f-4b18-aad4-c39cb6a14346/b9ea9ddf-0216-4cbf-aaa6-d104795cbe76_wxs_gdc_realn.bam 31637539357 BAM hg38 e386a703-8f2f-4b18-aad4-c39cb6a14346 MGI @@ -3433,8 +3634,10 @@ C3N-03086.WXS.N.hg38 C3N-03086 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-d C3N-03086.WXS.T.hg38.high_cov C3N-03086 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c1ed21d2-2fc8-4be4-88ac-343f9db0b6ee/728235ae-47f2-4422-8f47-e4d8fc573f04_wxs_gdc_realn.bam 34655470881 BAM hg38 c1ed21d2-2fc8-4be4-88ac-343f9db0b6ee MGI C3N-03088.WXS.N.hg38 C3N-03088 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9e51b077-3b4a-4bfa-a005-882b95040ecc/36c1c91c-84e9-4021-819e-ccb9d6f8f637_wxs_gdc_realn.bam 35419905397 BAM hg38 9e51b077-3b4a-4bfa-a005-882b95040ecc MGI C3N-03088.WXS.T.hg38 C3N-03088 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6252264f-0d8e-49d3-8882-680efcf3827a/ecd45ec0-57dd-4b73-a0eb-52a1d54d5c17_wxs_gdc_realn.bam 28632353256 BAM hg38 6252264f-0d8e-49d3-8882-680efcf3827a MGI +C3N-03092.WGS.N.hg38 C3N-03092 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//414ce4ab-48ea-4cbf-b375-31b33e82e22c/7d908a13-1a96-4c8a-a8ee-2574360aeaff_wgs_gdc_realn.bam 73753015124 BAM hg38 414ce4ab-48ea-4cbf-b375-31b33e82e22c MGI C3N-03092.WXS.N.hg38 C3N-03092 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2fa619d1-516a-49aa-a28e-77b4610cc6a3/7d908a13-1a96-4c8a-a8ee-2574360aeaff_wxs_gdc_realn.bam 33420898432 BAM hg38 2fa619d1-516a-49aa-a28e-77b4610cc6a3 MGI C3N-03092.WXS.T.hg38 C3N-03092 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cd621009-63dc-44af-8673-9199c3e5920f/47d67c08-4bdf-4fed-a0fb-fae09f213c99_wxs_gdc_realn.bam 30453213996 BAM hg38 cd621009-63dc-44af-8673-9199c3e5920f MGI +C3N-03093.WGS.N.hg38 C3N-03093 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//61a735df-47bf-471d-8893-f0bbcfd04763/b52dfbb4-71a1-40b5-8f03-56122d428afd_wgs_gdc_realn.bam 158944152577 BAM hg38 61a735df-47bf-471d-8893-f0bbcfd04763 MGI C3N-03093.WXS.N.hg38 C3N-03093 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5d1685ea-6990-4b65-8a0a-f612b53dd03e/b52dfbb4-71a1-40b5-8f03-56122d428afd_wxs_gdc_realn.bam 24048216533 BAM hg38 5d1685ea-6990-4b65-8a0a-f612b53dd03e MGI C3N-03093.WXS.T.hg38 C3N-03093 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6655cf18-88ae-46c7-94bc-2124ee4ce094/ad027991-1119-4114-bd08-47af71ae25e5_wxs_gdc_realn.bam 31249136420 BAM hg38 6655cf18-88ae-46c7-94bc-2124ee4ce094 MGI C3N-03173.WXS.A.hg38 C3N-03173 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/39c28a05-d5fe-455a-944e-213520d71b58/638c8cbe-c0c5-45fa-854d-eff395a728c0_wxs_gdc_realn.bam 29542907021 BAM hg38 39c28a05-d5fe-455a-944e-213520d71b58 MGI @@ -3457,6 +3660,7 @@ C3N-03190.WXS.T.hg38.high_cov C3N-03190 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3 C3N-03202.WXS.A.hg38 C3N-03202 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b8c9f3e1-0dc4-4f80-9130-22051c54207b/183cb04c-ba51-406a-b338-aa9d138205d3_wxs_gdc_realn.bam 28503567924 BAM hg38 b8c9f3e1-0dc4-4f80-9130-22051c54207b MGI C3N-03202.WXS.N.hg38 C3N-03202 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/40e83d14-2ffa-4ed2-b414-7fb8bece4a31/fab521c6-60cf-4a16-b32f-d066d19c3bc1_wxs_gdc_realn.bam 37865196915 BAM hg38 40e83d14-2ffa-4ed2-b414-7fb8bece4a31 MGI C3N-03202.WXS.T.hg38 C3N-03202 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f4a913d7-f17c-4147-9267-007ac663f1d4/af32a993-92b4-4a50-87fb-b2f022d1ce71_wxs_gdc_realn.bam 36842196652 BAM hg38 f4a913d7-f17c-4147-9267-007ac663f1d4 MGI +C3N-03204.WGS.N.hg38 C3N-03204 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//c8f12894-0bb9-41a9-a7a6-55661f980c0f/0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wgs_gdc_realn.bam 82872893991 BAM hg38 c8f12894-0bb9-41a9-a7a6-55661f980c0f MGI C3N-03204.WXS.N.hg38 C3N-03204 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5c27e5f1-f18c-46f2-9e75-6b8000d93a64/0ea1f237-cdc6-4d6c-a4a1-15caadce1ebc_wxs_gdc_realn.bam 37582249744 BAM hg38 5c27e5f1-f18c-46f2-9e75-6b8000d93a64 MGI C3N-03204.WXS.T.hg38 C3N-03204 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a885a5c9-fa4d-4b2e-9dd9-a4316afc8e7f/eb7cddfe-2246-4542-8756-06d1b3f872d6_wxs_gdc_realn.bam 37415167175 BAM hg38 a885a5c9-fa4d-4b2e-9dd9-a4316afc8e7f MGI C3N-03205.WXS.A.hg38 C3N-03205 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/53986e95-e3ee-42ce-a61a-8c876f801830/c0b104af-2c2d-4d86-b331-c80452577820_wxs_gdc_realn.bam 22664947568 BAM hg38 53986e95-e3ee-42ce-a61a-8c876f801830 MGI @@ -3494,8 +3698,10 @@ C3N-03417.WXS.T.hg38 C3N-03417 UCEC WXS tumor /gscmnt/gc2521/dinglab/mwyczalk/so C3N-03420.WXS.A.hg38 C3N-03420 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5d685c1e-c98e-4bd5-b7b2-f5248f4a7514/fca7b9ff-b596-4019-ba64-943653002e63_wxs_gdc_realn.bam 34500001887 BAM hg38 5d685c1e-c98e-4bd5-b7b2-f5248f4a7514 MGI C3N-03420.WXS.N.hg38 C3N-03420 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/209e6c70-967b-4934-b69b-097f395e9759/12e9b5ca-92a6-44bb-8690-98dbfde28bda_wxs_gdc_realn.bam 31555491019 BAM hg38 209e6c70-967b-4934-b69b-097f395e9759 MGI C3N-03420.WXS.T.hg38 C3N-03420 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/7c856009-69c7-453d-ac55-e9a6b9e46451/2d6e8da1-ae06-469c-9c2b-9671e226351d_wxs_gdc_realn.bam 29913796611 BAM hg38 7c856009-69c7-453d-ac55-e9a6b9e46451 MGI +C3N-03424.WGS.N.hg38 C3N-03424 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//7e37d12d-79c3-4f73-9f13-fe7eded36fef/753658b1-7496-42f3-8340-18be0c34469e_wgs_gdc_realn.bam 91935283813 BAM hg38 7e37d12d-79c3-4f73-9f13-fe7eded36fef MGI C3N-03424.WXS.N.hg38 C3N-03424 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2abe6156-f924-4cfe-b73a-fa8547091add/753658b1-7496-42f3-8340-18be0c34469e_wxs_gdc_realn.bam 31899295813 BAM hg38 2abe6156-f924-4cfe-b73a-fa8547091add MGI C3N-03424.WXS.T.hg38 C3N-03424 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/63692549-396c-474a-8b91-c2ac97fcf75f/8feea2f2-9e23-41cf-81c1-e7226f4908b9_wxs_gdc_realn.bam 26061941278 BAM hg38 63692549-396c-474a-8b91-c2ac97fcf75f MGI +C3N-03425.WGS.N.hg38 C3N-03425 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//38ef9d92-ef9e-4137-8fd3-3476b37c258e/666767b5-d283-426e-ac0c-58d625bfbe52_wgs_gdc_realn.bam 95695120007 BAM hg38 38ef9d92-ef9e-4137-8fd3-3476b37c258e MGI C3N-03425.WXS.N.hg38 C3N-03425 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fd90d03c-3c87-4517-9a20-fffdd6714e27/666767b5-d283-426e-ac0c-58d625bfbe52_wxs_gdc_realn.bam 25964386290 BAM hg38 fd90d03c-3c87-4517-9a20-fffdd6714e27 MGI C3N-03425.WXS.T.hg38 C3N-03425 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/4fe08085-9e1c-4993-8272-3b0acabdac39/e01db198-b767-4cd5-8f06-2fd55989595b_wxs_gdc_realn.bam 34402683446 BAM hg38 4fe08085-9e1c-4993-8272-3b0acabdac39 MGI C3N-03426.WXS.N.hg38 C3N-03426 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/96da296d-a9f1-40ae-b709-f94403b214d2/e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wxs_gdc_realn.bam 31571787936 BAM hg38 96da296d-a9f1-40ae-b709-f94403b214d2 MGI @@ -3511,6 +3717,7 @@ C3N-03439.WXS.T.hg38.high_cov C3N-03439 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3 C3N-03440.WXS.A.hg38 C3N-03440 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/771725ef-0b97-4f55-9097-9ab1bf5b968d/ccf21103-12a9-42a7-a7a4-ce6c5f53c291_wxs_gdc_realn.bam 32876188538 BAM hg38 771725ef-0b97-4f55-9097-9ab1bf5b968d MGI C3N-03440.WXS.N.hg38 C3N-03440 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/11cb649f-3017-41d3-85bb-ed5fe75a3603/c68f9ca9-8f35-4ff1-a751-cc6afeb6fc44_wxs_gdc_realn.bam 47803365342 BAM hg38 11cb649f-3017-41d3-85bb-ed5fe75a3603 MGI C3N-03440.WXS.T.hg38.high_cov C3N-03440 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/6b15040e-ce60-40e4-b233-a07f708e13d5/0ae21f34-235f-468e-99c1-0c845c5f03ed_wxs_gdc_realn.bam 59331845422 BAM hg38 6b15040e-ce60-40e4-b233-a07f708e13d5 MGI +C3N-03441.WGS.N.hg38 C3N-03441 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//c4a33c7d-e943-4289-bb44-762582ab397a/44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wgs_gdc_realn.bam 86480227712 BAM hg38 c4a33c7d-e943-4289-bb44-762582ab397a MGI C3N-03441.WXS.N.hg38 C3N-03441 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b67c36c7-c280-4ffb-b911-f4f2e1f5a46f/44bcb7d3-f9fa-48a3-8d25-ac2da0beef11_wxs_gdc_realn.bam 36840432967 BAM hg38 b67c36c7-c280-4ffb-b911-f4f2e1f5a46f MGI C3N-03441.WXS.T.hg38 C3N-03441 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/06361eff-ad77-40ec-8141-7488907e2522/32dd99c7-d21a-4c9d-903f-b3b270af7c81_wxs_gdc_realn.bam 29923883050 BAM hg38 06361eff-ad77-40ec-8141-7488907e2522 MGI C3N-03448.WXS.N C3N-03448 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cbda0e56-2b5d-4399-b501-9f8f109f2a11/CPT0225890002.WholeExome.RP-1303.bam 26594326910 BAM hg19 cbda0e56-2b5d-4399-b501-9f8f109f2a11 MGI @@ -3533,6 +3740,7 @@ C3N-03480.WXS.N C3N-03480 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3N-03480.WXS.T C3N-03480 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e0db6a83-d137-4648-a861-3060e2ec26c7/CPT0285090006.WholeExome.RP-1303.bam 28711739181 BAM hg19 e0db6a83-d137-4648-a861-3060e2ec26c7 MGI C3N-03484.WXS.N C3N-03484 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f8cce809-a398-47be-8948-746afe7eec16/CPT0285150002.WholeExome.RP-1303.bam 23963647596 BAM hg19 f8cce809-a398-47be-8948-746afe7eec16 MGI C3N-03484.WXS.T C3N-03484 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/b8cccab3-76d7-4121-bc02-0595bb4339d7/CPT0285140006.WholeExome.RP-1303.bam 24592525747 BAM hg19 b8cccab3-76d7-4121-bc02-0595bb4339d7 MGI +C3N-03486.WGS.N.hg38 C3N-03486 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//32d31bb5-6c2c-4744-bac4-14a297cce04b/ee42812c-00ed-48dc-9368-dbaccf74827e_wgs_gdc_realn.bam 127477121903 BAM hg38 32d31bb5-6c2c-4744-bac4-14a297cce04b MGI C3N-03486.WXS.N.hg38 C3N-03486 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/84051ecf-2e64-43bc-8528-237b961f9c46/ee42812c-00ed-48dc-9368-dbaccf74827e_wxs_gdc_realn.bam 43867543953 BAM hg38 84051ecf-2e64-43bc-8528-237b961f9c46 MGI C3N-03486.WXS.T.hg38 C3N-03486 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ff2575c5-3ec5-4b8e-8dfe-53cdece5de5f/20d89cb5-a513-4faa-92f4-cf1f43cbae18_wxs_gdc_realn.bam 37178175896 BAM hg38 ff2575c5-3ec5-4b8e-8dfe-53cdece5de5f MGI C3N-03487.WXS.N.hg38 C3N-03487 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/0fe6e0b6-6343-4de4-bcdf-3ce76f996224/5952f6d2-9a74-4404-9a00-1239265dc7d9_wxs_gdc_realn.bam 36792240940 BAM hg38 0fe6e0b6-6343-4de4-bcdf-3ce76f996224 MGI @@ -3547,6 +3755,7 @@ C3N-03619.WXS.N.hg38 C3N-03619 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cpt C3N-03619.WXS.T.hg38.high_cov C3N-03619 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2e6e6782-f080-4328-a11f-a3a37fe8807e/3d293f91-e107-43e8-a333-959746843119_wxs_gdc_realn.bam 56961149609 BAM hg38 2e6e6782-f080-4328-a11f-a3a37fe8807e MGI C3N-03620.WXS.N.hg38 C3N-03620 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d9496225-ab4f-42be-aaea-ee35e0f7f988/ef04af76-839e-4c25-865a-2d38baa77ab2_wxs_gdc_realn.bam 55335067879 BAM hg38 d9496225-ab4f-42be-aaea-ee35e0f7f988 MGI C3N-03620.WXS.T.hg38.high_cov C3N-03620 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/f0c44ce3-b75d-408e-b738-44f25c24c0cb/62ff7145-4160-4cd7-9e57-b0e04f57bb72_wxs_gdc_realn.bam 47606975963 BAM hg38 f0c44ce3-b75d-408e-b738-44f25c24c0cb MGI +C3N-03662.WGS.N.hg38 C3N-03662 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2ced49b5-6daa-47a3-985c-0f1837fed681/eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wgs_gdc_realn.bam 88929296282 BAM hg38 2ced49b5-6daa-47a3-985c-0f1837fed681 MGI C3N-03662.WXS.N.hg38 C3N-03662 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/ad8e0486-8b7e-4813-a620-d65d6a288451/eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wxs_gdc_realn.bam 33800637186 BAM hg38 ad8e0486-8b7e-4813-a620-d65d6a288451 MGI C3N-03662.WXS.T.hg38 C3N-03662 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0936aaa1-ffba-4b18-94a3-71e907a0f948/aabb4a27-736d-45c1-b5d2-e22def394b17_wxs_gdc_realn.bam 42799894376 BAM hg38 0936aaa1-ffba-4b18-94a3-71e907a0f948 MGI C3N-03664.WXS.N.hg38 C3N-03664 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/00263335-42b0-4fd9-9dc3-54ae6c22bc5c/87278be5-880b-403e-96ef-4556bc85a926_wxs_gdc_realn.bam 28517582735 BAM hg38 00263335-42b0-4fd9-9dc3-54ae6c22bc5c MGI @@ -3613,29 +3822,36 @@ C3N-03840.WXS.N.hg38 C3N-03840 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-d C3N-03840.WXS.T.hg38.high_cov C3N-03840 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/894038d4-3aeb-422d-8e7a-6502f4dcecae/c0d6a979-077e-4b15-b478-8ab5444bf3d6_wxs_gdc_realn.bam 65813966191 BAM hg38 894038d4-3aeb-422d-8e7a-6502f4dcecae MGI C3N-03841.WXS.N.hg38 C3N-03841 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1b4033bc-022d-421d-a5ce-fbad7e0c8b15/33799056-6d57-49ae-b723-1285c31a3dbf_wxs_gdc_realn.bam 30253536570 BAM hg38 1b4033bc-022d-421d-a5ce-fbad7e0c8b15 MGI C3N-03841.WXS.T.hg38 C3N-03841 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d6068c4c-863a-497f-a0fa-26f29d6aaf5b/58fab107-27f0-4322-a1a5-b40044b7dc29_wxs_gdc_realn.bam 37420446846 BAM hg38 d6068c4c-863a-497f-a0fa-26f29d6aaf5b MGI +C3N-03848.WGS.N.hg38 C3N-03848 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//b4a26c06-a33e-458c-8869-1a9718e31f69/0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wgs_gdc_realn.bam 80844526203 BAM hg38 b4a26c06-a33e-458c-8869-1a9718e31f69 MGI C3N-03848.WXS.N.hg38 C3N-03848 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5d0b27e6-ab79-441b-b517-45a1bcbdfc7d/0df7e1bd-c7e9-46b6-9a8a-733b0aeb8a3d_wxs_gdc_realn.bam 33676179556 BAM hg38 5d0b27e6-ab79-441b-b517-45a1bcbdfc7d MGI C3N-03848.WXS.T.hg38 C3N-03848 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0e575559-c2df-4394-9c04-77f9138c139b/db22b708-9f28-46e1-a158-e680c16abfc9_wxs_gdc_realn.bam 42955515337 BAM hg38 0e575559-c2df-4394-9c04-77f9138c139b MGI C3N-03849.WXS.N.hg38 C3N-03849 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/3fc0e634-aead-4cca-8c4a-fbc57321efc2/42a540a5-7464-4132-81f2-fe99cf58a436_wxs_gdc_realn.bam 33829969585 BAM hg38 3fc0e634-aead-4cca-8c4a-fbc57321efc2 MGI C3N-03849.WXS.T.hg38 C3N-03849 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/130912fb-80ca-42cd-bd76-284e3c843ea1/58d317f1-0935-498a-8d5f-b16499308ab4_wxs_gdc_realn.bam 32296730964 BAM hg38 130912fb-80ca-42cd-bd76-284e3c843ea1 MGI +C3N-03851.WGS.N.hg38 C3N-03851 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//36b8ae23-85fa-4963-9019-c14b2f668b7a/07144067-5157-4e9c-87e6-ae39734624f8_wgs_gdc_realn.bam 89830831900 BAM hg38 36b8ae23-85fa-4963-9019-c14b2f668b7a MGI C3N-03851.WXS.N.hg38 C3N-03851 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/dda7b1f9-a55e-43ba-b623-90c93682d34b/07144067-5157-4e9c-87e6-ae39734624f8_wxs_gdc_realn.bam 38018586011 BAM hg38 dda7b1f9-a55e-43ba-b623-90c93682d34b MGI C3N-03851.WXS.T.hg38 C3N-03851 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/de2864f8-6816-4c21-a229-66b0b339ee38/3b453860-03bc-4bb3-a378-8bc60b00762e_wxs_gdc_realn.bam 33645444082 BAM hg38 de2864f8-6816-4c21-a229-66b0b339ee38 MGI C3N-03853.WXS.N.hg38 C3N-03853 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/431eebd6-1422-4516-ac4c-78eb6cf7c7f3/d9f1ee6b-0467-460b-b46d-ccd105ebb600_wxs_gdc_realn.bam 38423127232 BAM hg38 431eebd6-1422-4516-ac4c-78eb6cf7c7f3 MGI C3N-03853.WXS.T.hg38.high_cov C3N-03853 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0efb60fe-b2d8-479f-a6f7-82f8eae7c452/03484d73-88a2-4b7d-974a-cca90dc31ce4_wxs_gdc_realn.bam 68278818410 BAM hg38 0efb60fe-b2d8-479f-a6f7-82f8eae7c452 MGI +C3N-03875.WGS.N.hg38 C3N-03875 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//934b36e1-cf74-4fd1-b311-110d4eafc244/d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wgs_gdc_realn.bam 78864452471 BAM hg38 934b36e1-cf74-4fd1-b311-110d4eafc244 MGI C3N-03875.WXS.N.hg38 C3N-03875 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e9286352-bd5a-47c3-b3f9-7648e6429e07/d29bdcdf-f368-41d2-91e9-5ea9f96224e0_wxs_gdc_realn.bam 29717035682 BAM hg38 e9286352-bd5a-47c3-b3f9-7648e6429e07 MGI C3N-03875.WXS.T.hg38 C3N-03875 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/5a5835e8-553c-48d5-9320-0d9a0e9d03b0/c144c286-a208-4b0e-8a31-5b40c4c61906_wxs_gdc_realn.bam 40136656577 BAM hg38 5a5835e8-553c-48d5-9320-0d9a0e9d03b0 MGI C3N-03876.WXS.N.hg38 C3N-03876 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6623712d-5992-451c-8ec2-fc5680f76a44/d3ac90d8-df39-473f-91a9-f212874fd4d9_wxs_gdc_realn.bam 59066869127 BAM hg38 6623712d-5992-451c-8ec2-fc5680f76a44 MGI C3N-03876.WXS.T.hg38.high_cov C3N-03876 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d063c358-4974-4229-a39a-ebdaada285aa/f4e27722-8239-4840-8e12-5dbb5e87ac8c_wxs_gdc_realn.bam 55251059264 BAM hg38 d063c358-4974-4229-a39a-ebdaada285aa MGI +C3N-03877.WGS.N.hg38 C3N-03877 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//9ad14321-de83-441c-aff2-20b320e00aac/32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wgs_gdc_realn.bam 80948441806 BAM hg38 9ad14321-de83-441c-aff2-20b320e00aac MGI C3N-03877.WXS.N.hg38 C3N-03877 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a066d294-d257-42c8-b5da-bf96ba7a62f0/32d6f5b7-d2af-405b-9e18-3d437fbcfeab_wxs_gdc_realn.bam 32159243668 BAM hg38 a066d294-d257-42c8-b5da-bf96ba7a62f0 MGI C3N-03877.WXS.T.hg38 C3N-03877 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/fb9196cc-1d50-4e6f-8c45-3abfd162a591/2603d898-8eb1-4f1d-93cb-c401918fb57f_wxs_gdc_realn.bam 33579821368 BAM hg38 fb9196cc-1d50-4e6f-8c45-3abfd162a591 MGI C3N-03878.WXS.N.hg38 C3N-03878 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6981637b-abe2-4415-a5f4-2b5f3ec4fb6d/5a965a42-f61f-4e27-81b4-d4ecd3e067b4_wxs_gdc_realn.bam 43181852165 BAM hg38 6981637b-abe2-4415-a5f4-2b5f3ec4fb6d MGI C3N-03878.WXS.T.hg38.high_cov C3N-03878 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2b544939-e131-4a72-bc95-c70ad9dc3f53/0533759f-76d9-4397-b4c1-adf72f1b694e_wxs_gdc_realn.bam 54646639169 BAM hg38 2b544939-e131-4a72-bc95-c70ad9dc3f53 MGI +C3N-03880.WGS.N.hg38 C3N-03880 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//49dc856d-7979-4696-b132-020eb7d68cbb/2b466dd6-459a-4dde-9411-28af3eaca5d5_wgs_gdc_realn.bam 80763851740 BAM hg38 49dc856d-7979-4696-b132-020eb7d68cbb MGI C3N-03880.WXS.N.hg38 C3N-03880 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/68f299b8-9efd-4ae6-af93-0e1151f8e4df/2b466dd6-459a-4dde-9411-28af3eaca5d5_wxs_gdc_realn.bam 37711480469 BAM hg38 68f299b8-9efd-4ae6-af93-0e1151f8e4df MGI C3N-03880.WXS.T.hg38 C3N-03880 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/8edd9ee4-5970-42d7-9344-a229bb4ecc76/95f547e8-33a3-489f-a890-bea3e46f4e7c_wxs_gdc_realn.bam 37631702533 BAM hg38 8edd9ee4-5970-42d7-9344-a229bb4ecc76 MGI +C3N-03882.WGS.N.hg38 C3N-03882 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//09beeeda-3425-4b24-9b16-a40d53dbb759/08b8360a-6655-4096-bfc9-46dab9751926_wgs_gdc_realn.bam 89442085514 BAM hg38 09beeeda-3425-4b24-9b16-a40d53dbb759 MGI C3N-03882.WXS.N.hg38 C3N-03882 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/bb04dfe1-55c9-4f9d-bb4a-436839300327/08b8360a-6655-4096-bfc9-46dab9751926_wxs_gdc_realn.bam 36944866466 BAM hg38 bb04dfe1-55c9-4f9d-bb4a-436839300327 MGI C3N-03882.WXS.T.hg38 C3N-03882 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/840c57c9-2d79-44e4-a134-fe434377ad18/972d4ce3-7e18-4cec-a086-ce898371b25b_wxs_gdc_realn.bam 35827106028 BAM hg38 840c57c9-2d79-44e4-a134-fe434377ad18 MGI C3N-03884.WXS.A.hg38 C3N-03884 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/1592ef66-643e-48bc-bdd7-65ab54c84167/f20d08f0-8eb4-483d-8916-3b19bf7292f4_wxs_gdc_realn.bam 29804537263 BAM hg38 1592ef66-643e-48bc-bdd7-65ab54c84167 MGI C3N-03884.WXS.N.hg38 C3N-03884 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/2b1c4de6-c7a8-46c5-8aa3-2d0deadf966f/5ba8387a-5795-4b55-8f83-9d3440b657f2_wxs_gdc_realn.bam 33830566362 BAM hg38 2b1c4de6-c7a8-46c5-8aa3-2d0deadf966f MGI C3N-03884.WXS.T.hg38.high_cov C3N-03884 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/878beaab-a108-4aa4-b18a-a0d91624450a/87297bf5-8869-4ea2-9dd3-976928552d5c_wxs_gdc_realn.bam 68175848017 BAM hg38 878beaab-a108-4aa4-b18a-a0d91624450a MGI +C3N-03886.WGS.N.hg38 C3N-03886 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//2718410a-0a35-41b7-81e0-c5ddc8fa8c31/b3179798-a286-4505-b913-4b922716565c_wgs_gdc_realn.bam 88759881829 BAM hg38 2718410a-0a35-41b7-81e0-c5ddc8fa8c31 MGI C3N-03886.WXS.N.hg38 C3N-03886 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/71a8e255-ea4f-463f-934f-4bc877733b20/b3179798-a286-4505-b913-4b922716565c_wxs_gdc_realn.bam 45068587962 BAM hg38 71a8e255-ea4f-463f-934f-4bc877733b20 MGI C3N-03886.WXS.T.hg38 C3N-03886 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c424eaa1-3ed7-4967-bfd0-b4a7f884fe80/bc1a4b77-dcb6-4ee6-8c9f-d98f04caed85_wxs_gdc_realn.bam 37176525652 BAM hg38 c424eaa1-3ed7-4967-bfd0-b4a7f884fe80 MGI C3N-03888.WXS.N.hg38.high_cov C3N-03888 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6abded9f-d254-48c6-ba93-bc873d7957d4/86c78340-b7f1-4b1d-928e-86ce8f3894b3_wxs_gdc_realn.bam 63243431557 BAM hg38 6abded9f-d254-48c6-ba93-bc873d7957d4 MGI @@ -3676,19 +3892,23 @@ C3N-04113.WXS.N C3N-04113 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC C3N-04119.WXS.A.hg38 C3N-04119 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/f46dc19d-6046-4653-a231-2713c86decf8/33f12f56-3c44-4a04-8d7c-e52f71a5fb44_wxs_gdc_realn.bam 32992142411 BAM hg38 f46dc19d-6046-4653-a231-2713c86decf8 MGI C3N-04119.WXS.N.hg38 C3N-04119 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/abfd8f03-72a2-4d88-8b24-8f41d6b4ff7a/bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wxs_gdc_realn.bam 35287260526 BAM hg38 abfd8f03-72a2-4d88-8b24-8f41d6b4ff7a MGI C3N-04119.WXS.T.hg38.high_cov C3N-04119 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/92a2cc56-3493-4bdb-92f7-e86d64937b60/eb856f0f-f9f8-4ef3-bcd7-824049ed9109_wxs_gdc_realn.bam 63560057138 BAM hg38 92a2cc56-3493-4bdb-92f7-e86d64937b60 MGI +C3N-04124.WGS.N.hg38 C3N-04124 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//9f83f046-a892-448f-92ff-0d84f2d9d9c3/161e1a4d-b9b1-42fe-8399-2bc263936720_wgs_gdc_realn.bam 87586410762 BAM hg38 9f83f046-a892-448f-92ff-0d84f2d9d9c3 MGI C3N-04124.WXS.N.hg38 C3N-04124 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/45bbd6b6-b949-43fa-a5be-5eaf426405b6/161e1a4d-b9b1-42fe-8399-2bc263936720_wxs_gdc_realn.bam 31497467430 BAM hg38 45bbd6b6-b949-43fa-a5be-5eaf426405b6 MGI C3N-04124.WXS.T.hg38 C3N-04124 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/80431699-b13f-4a48-bf2f-a30e17a2db53/0a7bcec4-396e-4a43-a17b-fca1aebf4e5e_wxs_gdc_realn.bam 41431277364 BAM hg38 80431699-b13f-4a48-bf2f-a30e17a2db53 MGI C3N-04126.WXS.N.hg38 C3N-04126 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/13130b21-bb87-4799-be7a-da3ed86175c3/7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wxs_gdc_realn.bam 45588567421 BAM hg38 13130b21-bb87-4799-be7a-da3ed86175c3 MGI C3N-04126.WXS.T.hg38.high_cov C3N-04126 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eac7d1ac-a38c-41cb-b38f-329cde637848/cda94bf3-c5f3-49b7-89ad-e31cf301f12d_wxs_gdc_realn.bam 60378221864 BAM hg38 eac7d1ac-a38c-41cb-b38f-329cde637848 MGI +C3N-04127.WGS.N.hg38 C3N-04127 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//e52b65fb-1537-4b1e-830c-ae5ca45be4dc/f41b6b00-bcda-49b7-81c6-5660d2da8d56_wgs_gdc_realn.bam 79207707961 BAM hg38 e52b65fb-1537-4b1e-830c-ae5ca45be4dc MGI C3N-04127.WXS.N.hg38 C3N-04127 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3dd87d7b-e998-40c8-811c-359e9f82a263/f41b6b00-bcda-49b7-81c6-5660d2da8d56_wxs_gdc_realn.bam 35495837871 BAM hg38 3dd87d7b-e998-40c8-811c-359e9f82a263 MGI C3N-04127.WXS.T.hg38 C3N-04127 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e83f0336-0a89-4545-8479-d1a1dc01d99d/c1b6681d-491b-4738-a2a7-d3363b2b9f4e_wxs_gdc_realn.bam 26103182783 BAM hg38 e83f0336-0a89-4545-8479-d1a1dc01d99d MGI C3N-04152.WXS.N.hg38 C3N-04152 HNSCC WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/d182cfa9-ce18-41e1-a75e-9012d3a4d590/1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wxs_gdc_realn.bam 31011742430 BAM hg38 d182cfa9-ce18-41e1-a75e-9012d3a4d590 MGI C3N-04152.WXS.T.hg38 C3N-04152 HNSCC WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2c751d69-412d-462c-b1b5-8b25e6b6f9cd/a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wxs_gdc_realn.bam 31866404405 BAM hg38 2c751d69-412d-462c-b1b5-8b25e6b6f9cd MGI +C3N-04155.WGS.N.hg38 C3N-04155 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//cad85f10-c277-4559-99fb-32517840e29a/4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wgs_gdc_realn.bam 77919095694 BAM hg38 cad85f10-c277-4559-99fb-32517840e29a MGI C3N-04155.WXS.N.hg38 C3N-04155 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/e178ecd2-6264-4ec0-bc22-2c22db576e5f/4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wxs_gdc_realn.bam 39803597688 BAM hg38 e178ecd2-6264-4ec0-bc22-2c22db576e5f MGI C3N-04155.WXS.T.hg38 C3N-04155 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/a4161921-2f2d-4c03-bada-17523cad8eb9/78718394-bc16-4c02-b49f-511db21da76c_wxs_gdc_realn.bam 38063383676 BAM hg38 a4161921-2f2d-4c03-bada-17523cad8eb9 MGI C3N-04157.WXS.A.hg38 C3N-04157 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/04b66161-f219-4e4b-8e3c-f018d780d4ec/02ae89ac-c0af-4edb-8b97-049eff8170f8_wxs_gdc_realn.bam 26710973014 BAM hg38 04b66161-f219-4e4b-8e3c-f018d780d4ec MGI C3N-04157.WXS.N.hg38 C3N-04157 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/d9a75f24-d422-459c-af8a-a9d8fff4cb16/fee32560-8cce-466c-abf6-1a732c5ed2a0_wxs_gdc_realn.bam 35885298377 BAM hg38 d9a75f24-d422-459c-af8a-a9d8fff4cb16 MGI C3N-04157.WXS.T.hg38 C3N-04157 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b0f2ec05-6722-4e3d-941d-12ffb5a84979/58547ca2-ad3a-435c-8475-e89753be99a7_wxs_gdc_realn.bam 31605901682 BAM hg38 b0f2ec05-6722-4e3d-941d-12ffb5a84979 MGI +C3N-04162.WGS.N.hg38 C3N-04162 LSCC WGS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data//8a7829cf-beff-4e1f-9437-863117642312/6e1ee97c-2ad3-4780-832a-95fa396a62d4_wgs_gdc_realn.bam 82677184151 BAM hg38 8a7829cf-beff-4e1f-9437-863117642312 MGI C3N-04162.WXS.N.hg38 C3N-04162 LSCC WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/eeacb63b-2483-49da-95e6-e431a56887bb/6e1ee97c-2ad3-4780-832a-95fa396a62d4_wxs_gdc_realn.bam 32765666914 BAM hg38 eeacb63b-2483-49da-95e6-e431a56887bb MGI C3N-04162.WXS.T.hg38 C3N-04162 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/b35d2e25-9b85-4539-82b7-447dcf4d46a4/fb4d7e5b-3eb4-4172-946e-1c7969324651_wxs_gdc_realn.bam 31575892510 BAM hg38 b35d2e25-9b85-4539-82b7-447dcf4d46a4 MGI C3N-04168.WXS.A.hg38 C3N-04168 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/c655fe7f-a330-487d-b05d-06635f271814/91b1895f-6e7e-49b7-a6d2-768ae051591d_wxs_gdc_realn.bam 28011600755 BAM hg38 c655fe7f-a330-487d-b05d-06635f271814 MGI