Use prerelease access-om2-bgc/pr22-2

Author: dougiesquire

config.yaml

@@ -20,58 +20,64 @@ sync:
     path: null # Set to location on /g/data or a remote server and path (rsync syntax)
 
 # Model configuration
+modules:
+    use:
+        - /g/data/vk83/prerelease/modules
+    load:
+        - access-om2-bgc/pr22-2
+
 name: common
 model: access-om2
 input:
-    - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc
-    - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc
-    - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc
-    - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc
-    - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc
+    - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_conserve2nd.nc
+    - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/JRA55_MOM1_patch.nc
+    - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_1st_conserve.nc
+    - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_2nd_conserve.nc
+    - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jra55_cice_patch.nc
 submodels:
     - name: atmosphere
       model: yatm
-      exe: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26=2023.10.26-ltfg7jcn6t4cefotvj3kjnyu5nru26xo/bin/yatm.exe
+      exe: yatm.exe
       input:
-          - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc
-          - /g/data/vk83/experiments/inputs/JRA-55/RYF/v1-4/data
+          - /g/data/vk83/configurations/inputs/access-om2/remapping_weights/JRA55/global.1deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc
+          - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-4/data
       ncpus: 1
 
     - name: ocean
       model: mom
-      exe: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.2023.11.09=2023.11.09-64l5azdtcoxhrgb5ynn2vued5lmjvn33/bin/fms_ACCESS-OM-BGC.x
+      exe: fms_ACCESS-OM-BGC.x
       input:
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/bgc_param.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_iaf.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_ryf.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc.res.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc_sediment.res.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/dust.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/bgc_param.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_iaf.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/co2_ryf.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc.res.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/csiro_bgc_sediment.res.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/biogeochemistry/global.1deg/2022.02.24/dust.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/grid_spec.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_hgrid.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/mosaic/global.1deg/2020.05.30/ocean_mosaic.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/topog.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/bathymetry/global.1deg/2020.10.22/ocean_mask.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/grids/vertical/global.1deg/2020.10.22/ocean_vgrid.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/processor_masks/global.1deg/216.16x15/2020.05.30/ocean_mask_table
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/chlorophyll/global.1deg/2020.05.30/chl.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/tideamp.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_amp.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/tides/global.1deg/2020.05.30/roughness_cdbot.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ocean/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
       ncpus: 216
 
     - name: ice
       model: cice5
-      exe: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19=2023.10.19-v3zncpqjj2gyseudbwiudolcjq3k3leo/bin/cice_auscom_360x300_24x1_24p.exe
+      exe: cice_auscom_360x300_24x1_24p.exe
       input: 
-          - /g/data/vk83/experiments/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/i2o.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/o2i.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc
-          - /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/grid.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ice/grids/global.1deg/2024.04.17/kmt.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/i2o.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions_biogeochemistry/global.1deg/2022.02.24/o2i.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/u_star.nc
+          - /g/data/vk83/configurations/inputs/access-om2/ice/initial_conditions/global.1deg/2020.05.30/monthly_sstsss.nc
       ncpus: 24
 
 # Collation
@@ -81,7 +87,7 @@ collate:
   mem: 30GB
   ncpus: 4
   queue: normal
-  exe: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.2023.11.09=2023.11.09-64l5azdtcoxhrgb5ynn2vued5lmjvn33/bin/mppnccombine.spack
+  exe: mppnccombine.spack
 
 manifest:
   reproduce:

manifests/exe.yaml

@@ -2,17 +2,17 @@ format: yamanifest
 version: 1.0
 ---
 work/atmosphere/yatm.exe:
-  fullpath: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26=2023.10.26-ltfg7jcn6t4cefotvj3kjnyu5nru26xo/bin/yatm.exe
+  fullpath: /g/data/vk83/prerelease/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26_access-om2-x7dud7bdjikzmharfzc5orm5jjlfanja/bin/yatm.exe
   hashes:
-    binhash: 4e8b4ef76e971c4af3b26cfac632e160
-    md5: 5baa1d417fe6708fc30cbeaa57d82f96
+    binhash: bdc01f66fe3e78ffc140be76ed3223b0
+    md5: ed8e7783a5279a358fb7e24221e3e350
 work/ice/cice_auscom_360x300_24x1_24p.exe:
-  fullpath: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19=2023.10.19-v3zncpqjj2gyseudbwiudolcjq3k3leo/bin/cice_auscom_360x300_24x1_24p.exe
+  fullpath: /g/data/vk83/prerelease/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19_access-om2-4cy245xma7xr7x37a7sbavycyhiikbjl/bin/cice_auscom_360x300_24x1_24p.exe
   hashes:
-    binhash: 3a65f67d21152e77034da28c22a94c66
-    md5: 37866455b057c85c3ea50c0ef0ea840b
+    binhash: 432d10c9f10536a6e30b54ed2d60282a
+    md5: 0e25017af3916f930ea35d4e4d815798
 work/ocean/fms_ACCESS-OM-BGC.x:
-  fullpath: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.2023.11.09=2023.11.09-64l5azdtcoxhrgb5ynn2vued5lmjvn33/bin/fms_ACCESS-OM-BGC.x
+  fullpath: /g/data/vk83/prerelease/apps/spack/0.22/release/linux-rocky8-x86_64/intel-19.0.5.281/mom5-git.ed9eadc28f61818a075d0036ba80efc8863a7fcf_access-om2-xml5najgbat6ztxhqscq557d2cogntsi/bin/fms_ACCESS-OM-BGC.x
   hashes:
-    binhash: 45352e33876da49ca042014a9f6686e5
-    md5: a909552e85690be692ad3ec94016181b
+    binhash: 7f3011d9c3a8fad2b4bb1bf56e8b01d9
+    md5: 8e36ab5bc15d89ff5a8e4a725ca6149a